RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18077
(451 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 161 bits (410), Expect = 9e-48
Identities = 77/245 (31%), Positives = 110/245 (44%), Gaps = 68/245 (27%)
Query: 212 SFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFAL 271
S GEKP+ C C K+F+ +L H +TH+ KP+ C +CGK+F+
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 272 KSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGK 331
K L +H+ + + EKP+KC C K+F+ ++NLRAH +TH+ KP+ C +CGK
Sbjct: 62 KKDLTRHQ--------RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGK 113
Query: 332 AFALKSYLYKH------EDSSCLKSYDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARH 385
+F+ ++L H E K Y +C +CGK +S NL H
Sbjct: 114 SFSQLAHLRAHQRTHTGE-----KPY----------------KCPECGKSFSREDNLHTH 152
Query: 386 RQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGHI 443
++ H T K CP+CG KSFSR L H
Sbjct: 153 QRTH-----TGEKPYKCPECG--------------------------KSFSRRDALNVHQ 181
Query: 444 RTHTG 448
RTHTG
Sbjct: 182 RTHTG 186
Score = 160 bits (407), Expect = 3e-47
Identities = 75/241 (31%), Positives = 111/241 (46%), Gaps = 68/241 (28%)
Query: 157 STSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFS 214
SS+ + K CP+CG KSFS
Sbjct: 4 FGSSSSVAQAALE-----PGEKPYACPECG--------------------------KSFS 32
Query: 215 RPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSY 274
R L H RTHTGEKP+KC C K+F+DK +L H +TH+ KP+ C +CGK+F+ ++
Sbjct: 33 RSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRAN 92
Query: 275 LYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFA 334
L H+ + + EKP+ C C K+F+ ++LRAH +TH+ KP+ C +CGK+F+
Sbjct: 93 LRAHQ--------RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFS 144
Query: 335 LKSYLYKH------EDSSCLKSYDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQI 388
+ L+ H E K Y +C +CGK +S L H++
Sbjct: 145 REDNLHTHQRTHTGE-----KPY----------------KCPECGKSFSRRDALNVHQRT 183
Query: 389 H 389
H
Sbjct: 184 H 184
Score = 152 bits (387), Expect = 2e-44
Identities = 68/185 (36%), Positives = 103/185 (55%), Gaps = 25/185 (13%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQI- 203
+ C +CGK +S S +LA H++ H T K CP+CGK + + L H +
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTH-----TGEKPYKCPECGKSF----SDKKDLTRHQRTH 72
Query: 204 -----CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
+CP C KSFS+ L+ H RTHTGEKP+ C C K+F+ ++LRAH +TH+ K
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Query: 259 PFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTH 318
P+ C +CGK+F+ + L+ H+ + + EKP+KC C K+F+ + L H +TH
Sbjct: 133 PYKCPECGKSFSREDNLHTHQ--------RTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Query: 319 SKVKP 323
+ K
Sbjct: 185 TGKKT 189
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 145 bits (369), Expect = 1e-41
Identities = 58/213 (27%), Positives = 84/213 (39%), Gaps = 44/213 (20%)
Query: 196 HLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK--VCDKAFADKSNLRA 249
IC C ++++ W LQ H+ HTGEKPF CK C+K F +L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 250 HIQTHSKVKPFVCE--KCGKAFALKSYLYKHEDSSCLKSYDSSSSEK--PFKCKV--CDK 303
H TH+ K F C+ C F K+ + KH + + K + C C K
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF--------NRFHNIKICVYVCHFENCGK 114
Query: 304 AFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKHE----DSSCLKSYDSSSNG 357
AF + L+ H +H++ P+ C E C K F+L S L +HE C K
Sbjct: 115 AFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD------ 168
Query: 358 HLNKFTTISFQCRDCGKHYSTSSNLARHRQIHR 390
C GK ++ L + H+
Sbjct: 169 ----------SCSFVGKTWTLY--LKHVAECHQ 189
Score = 143 bits (364), Expect = 5e-41
Identities = 54/221 (24%), Positives = 82/221 (37%), Gaps = 53/221 (23%)
Query: 221 GHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCE--KCGKAFALKSYLY 276
G K + C C A+ L+AH+ H+ KPF C+ C K F +L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 277 KHEDSSCLKSYDSSSSEKPFKCK--VCDKAFADKSNLRAHIQTHS--KVKPFVC--EKCG 330
+H + + EK F C CD F K+N++ H K+ +VC E CG
Sbjct: 62 RHS--------LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCG 113
Query: 331 KAFALKSYLYKH------EDSSCLKSYDSSSNGHLNKFTTISFQC--RDCGKHYSTSSNL 382
KAF + L H + Y +C C K +S S L
Sbjct: 114 KAFKKHNQLKVHQFSHTQQ-----LPY----------------ECPHEGCDKRFSLPSRL 152
Query: 383 ARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQI 423
RH ++H K +C GK ++++L+ +
Sbjct: 153 KRHEKVHAGYPCKKDDSCSFVGK------TWTLYLKHVAEC 187
Score = 138 bits (351), Expect = 3e-39
Identities = 56/207 (27%), Positives = 79/207 (38%), Gaps = 47/207 (22%)
Query: 147 FQC--RDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG-KLYVSMPAYSMHLRTHNQI 203
+ C DCG Y+ + L H H T G K +
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKH---------T----GEKPFP--------------- 44
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK--VCDKAFADKSNLRAHIQTHS--KVKP 259
C+ C K F+ L H THTGEK F C CD F K+N++ H K+
Sbjct: 45 CKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV 104
Query: 260 FVC--EKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCK--VCDKAFADKSNLRAHI 315
+VC E CGKAF + L H+ S + + P++C CDK F+ S L+ H
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSH--------TQQLPYECPHEGCDKRFSLPSRLKRHE 156
Query: 316 QTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ H+ + C + KH
Sbjct: 157 KVHAGYPCKKDDSCSFVGKTWTLYLKH 183
Score = 77.6 bits (192), Expect = 8e-17
Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 17/119 (14%)
Query: 147 FQC--RDCGKHYSTSSNLARHRQIHRSPDDTKARTCP------QCGKLYVSMPAYSMHLR 198
F C C ++T +N+ +H + C CGK + +H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRF-----HNIKICVYVCHFENCGKAFKKHNQLKVHQF 127
Query: 199 THNQ----ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQT 253
+H Q C C K FS P L+ H + H G K C + H+
Sbjct: 128 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186
Score = 40.3 bits (95), Expect = 4e-04
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 416 HLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTG 448
IC C ++++ W LQ H+ HTG
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTG 39
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 137 bits (348), Expect = 3e-39
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 34/179 (18%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQC 206
+ C + + + L H + K C G C
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG---------------------C 42
Query: 207 PHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCE- 263
+ F ++L H+R HTGEKP KC C K+++ NL+ H+++H+ KP++CE
Sbjct: 43 SRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEH 102
Query: 264 -KCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKV--CDKAFADKSNLRAHIQTHS 319
C KAF+ S KH++ + S+EKP+ CK+ C K + D S+LR H++T
Sbjct: 103 EGCSKAFSNASDRAKHQNR-------THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 108 bits (273), Expect = 2e-28
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 48/181 (26%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQT---HSKVKPFVCEKCG-----KAFALKSYLYKHED 280
E + C + F + L HI + H + K FVC G + F + L H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM- 59
Query: 281 SSCLKSYDSSSSEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCE--KCGKAFALK 336
+ EKP KC C K+++ NL+ H+++H+ KP++CE C KAF+
Sbjct: 60 -------RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA 112
Query: 337 SYLYKHEDS--------SCLKSYDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQI 388
S KH++ C + C K Y+ S+L +H +
Sbjct: 113 SDRAKHQNRTHSNEKPYVC--------------------KLPGCTKRYTDPSSLRKHVKT 152
Query: 389 H 389
Sbjct: 153 V 153
Score = 107 bits (269), Expect = 7e-28
Identities = 49/259 (18%), Positives = 79/259 (30%), Gaps = 121/259 (46%)
Query: 204 CQCPHCSKSFSRPWLLQGHI---RTHTGEKPFKCKVCD-----KAFADKSNLRAHIQTHS 255
C+ CS+ F L HI H K F C + F + L H++ H+
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 256 KVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKV--CDKAFADKSNLRA 313
EKP KC C K+++ NL+
Sbjct: 64 ------------------------------------GEKPHKCTFEGCRKSYSRLENLKT 87
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSNGHLNKFTTISFQCRDCG 373
H+++H+ KP++CE G C
Sbjct: 88 HLRSHTGEKPYMCEHEG-----------------------------------------CS 106
Query: 374 KHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQ----ICQCPHC 429
K +S +S+ A+H RTH+ +C+ P C
Sbjct: 107 KAFSNASDRAKH------------------------------QNRTHSNEKPYVCKLPGC 136
Query: 430 SKSFSRPWLLQGHIRTHTG 448
+K ++ P L+ H++T G
Sbjct: 137 TKRYTDPSSLRKHVKTVHG 155
Score = 54.1 bits (131), Expect = 5e-09
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 147 FQC--RDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQ--CGKLYVSMPAYSMH-LRT 199
+C C K YS NL H + H T K C C K + + + H RT
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSH-----TGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 200 HNQ----ICQCPHCSKSFSRPWLLQGHIRTHTG 228
H+ +C+ P C+K ++ P L+ H++T G
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 135 bits (343), Expect = 7e-39
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 226 HTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLK 285
+G +C C K F K L+ H + H+ KPF C KCGK + K L +HE
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE-----A 56
Query: 286 SYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ SE+ F C VC + F + LR H+ +H+ P+ C C + F K L H
Sbjct: 57 RNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 106 bits (268), Expect = 5e-28
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 30/134 (22%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQIC 204
+C C K + + L H + H T K CP+CGK Y +L H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKH-----TGEKPFECPKCGKCY----FRKENLLEH---- 54
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ + E+ F C VC + F + LR H+ +H+ P+ C
Sbjct: 55 ---------------EARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS 99
Query: 265 CGKAFALKSYLYKH 278
C + F K L H
Sbjct: 100 CSQQFMQKKDLQSH 113
Score = 92.2 bits (230), Expect = 1e-22
Identities = 34/162 (20%), Positives = 52/162 (32%), Gaps = 52/162 (32%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCL---- 348
+C C K F K L+ H + H+ KPF C KCGK + K L +HE +C+
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 349 KSYDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKL 406
+ + C C + + L H H T C C +
Sbjct: 65 QVF----------------TCSVCQETFRRRMELRLHMVSH-----TGEMPYKCSSCSQQ 103
Query: 407 YVSMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ L++H I+ H+G
Sbjct: 104 F----MQKKDLQSH---------------------MIKLHSG 120
Score = 60.6 bits (148), Expect = 1e-11
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 147 FQCRDCGKHYSTSSNLARH---RQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQI 203
F+C CGK Y NL H ++RS + TC C + + M LR H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRS---EQVFTCSVCQETF----RRRMELRLHMVS 88
Query: 204 ------CQCPHCSKSFSRPWLLQGH-IRTHTGEK 230
+C CS+ F + LQ H I+ H+G
Sbjct: 89 HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 117 bits (295), Expect = 5e-32
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 221 GHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHED 280
G +G+K + C+ C K+F KS H+ H ++P+ C CGK F +K +L H
Sbjct: 1 GS-SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM- 57
Query: 281 SSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYL 339
+ KP++C +C K F + + H+ S K + K + S
Sbjct: 58 -------KIHTGIKPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAKAEQNTTEASGP 107
Score = 111 bits (280), Expect = 6e-30
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
CQC KSF+ H+ H G +P+ C VC K F K +L H++ H+ +KP+ C
Sbjct: 13 CQC---GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECN 69
Query: 264 KCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRA 313
C K F + ++H +S K ++ ++ + S +
Sbjct: 70 ICAKRFMWRDSFHRH----------VTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 93.7 bits (234), Expect = 2e-23
Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 36/131 (27%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQIC 204
+ C CGK ++ S RH +H + C CG
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMH-----LGLRPYGCGVCG-------------------- 44
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
K F L GH++ HTG KP++C +C K F + + H+ S K + K
Sbjct: 45 ------KKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV--TSCTKSYEAAK 96
Query: 265 CGKAFALKSYL 275
+ S
Sbjct: 97 AEQNTTEASGP 107
Score = 68.6 bits (169), Expect = 1e-14
Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 35/105 (33%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQIC 204
+ C CGK + +L H +IH T K C C
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIH-----TGIKPYECNICA-------------------- 72
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRA 249
K F H + K ++ ++ + S +
Sbjct: 73 ------KRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 58.6 bits (143), Expect = 4e-11
Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 55/147 (37%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYD 352
+K + C+ C K+F KS H+ H ++P+ C CGK F
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF------------------- 47
Query: 353 SSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSM 410
+L H +IH T K C C K + M
Sbjct: 48 ------------------------KMKHHLVGHMKIH-----TGIKPYECNICAKRF--M 76
Query: 411 PAYSMHLRTHN--QICQCPHCSKSFSR 435
S H + + + ++ +
Sbjct: 77 WRDSFHRHVTSCTKSYEAAKAEQNTTE 103
Score = 39.3 bits (93), Expect = 3e-04
Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 34/84 (40%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQIC 424
+ C CGK ++ S RH +H + C CG
Sbjct: 11 YPC-QCGKSFTHKSQRDRHMSMH-----LGLRPYGCGVCG-------------------- 44
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
K F L GH++ HTG
Sbjct: 45 ------KKFKMKHHLVGHMKIHTG 62
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 116 bits (293), Expect = 5e-32
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 225 THTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCL 284
+ P KC+VC K F+ K L+ H++ H+ VKP+ C+ C A A S L KH
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL----- 56
Query: 285 KSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
S E+PFKC++C A + S L H+++H+
Sbjct: 57 ---RIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 104 bits (262), Expect = 1e-27
Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+C C K FSR L+ H+R HTG KP+KCK CD A AD S+L H++ HS +PF C+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 265 CGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
C A S L H S + +
Sbjct: 70 CPYASRNSSQLTVHL--------RSHTGDSGPSS 95
Score = 88.3 bits (220), Expect = 9e-22
Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 33/118 (27%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQIC 204
+C CGK +S L H + H T K C C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCH-----TGVKPYKCKTCD-------------------- 43
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ + L H+R H+ E+PFKC++C A + S L H+++H+
Sbjct: 44 ------YAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 69.0 bits (170), Expect = 6e-15
Identities = 31/158 (19%), Positives = 48/158 (30%), Gaps = 76/158 (48%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYD 352
P KC+VC K F+ K L+ H++ H+ VKP+ C+ C A
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAA------------------- 46
Query: 353 SSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSM 410
+ SS+L +H +IH + + C C
Sbjct: 47 ------------------------ADSSSLNKHLRIH-----SDERPFKCQICPY----- 72
Query: 411 PAYSMHLRTHNQICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ L H+R+HTG
Sbjct: 73 ---------------------ASRNSSQLTVHLRSHTG 89
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 115 bits (290), Expect = 3e-31
Identities = 43/125 (34%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC- 262
C C+K F ++ H+ TH G + C C KAF + S L+ H H+ KPF C
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Query: 263 -EKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKV--CDKAFADKSNLRAHIQTHS 319
E CGK F+L L H + ++P+ C C+K FA +NL++HI TH+
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIH--------TGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Query: 320 KVKPF 324
K K
Sbjct: 119 KAKNN 123
Score = 106 bits (268), Expect = 5e-28
Identities = 43/120 (35%), Positives = 60/120 (50%), Gaps = 15/120 (12%)
Query: 229 EKPFKC--KVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKS 286
+ C K C K F D S +R H+ TH + VC +CGKAF S L +H+
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQ------- 54
Query: 287 YDSSSSEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKH 342
+ EKPF+C C K F+ NLR H++ H+ +P+VC + C K FA + L H
Sbjct: 55 -LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 100 bits (252), Expect = 9e-26
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 20/126 (15%)
Query: 147 FQC--RDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQI- 203
C + C K + +S + +H H + C +CGK +V S L+ H +
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH----GPRVHVCAECGKAFV----ESSKLKRHQLVH 57
Query: 204 -------CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTH 254
C C K FS + L+ H+R HTG++P+ C C+K FA +NL++HI TH
Sbjct: 58 TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Query: 255 SKVKPF 260
+K K
Sbjct: 118 AKAKNN 123
Score = 84.1 bits (209), Expect = 7e-20
Identities = 47/167 (28%), Positives = 61/167 (36%), Gaps = 61/167 (36%)
Query: 293 EKPFKC--KVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH------ED 344
+ C K C K F D S +R H+ TH + VC +CGKAF S L +H E
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGE- 60
Query: 345 SSCLKSYDSSSNGHLNKFTTISFQC--RDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQ 402
K + QC CGK +S NL H +IH T
Sbjct: 61 ----KPF----------------QCTFEGCGKRFSLDFNLRTHVRIH---------T--- 88
Query: 403 CG-KLYVSMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGHIRTHTG 448
G + YV C C+K F++ L+ HI TH
Sbjct: 89 -GDRPYV---------------CPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 72.5 bits (179), Expect = 9e-16
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 21/99 (21%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCP--QCGKLYVSMPAYSMHLRTHNQ 202
C +CGK + SS L RH+ +H T K C CGK + + +LRTH +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVH-----TGEKPFQCTFEGCGKRF----SLDFNLRTHVR 85
Query: 203 I--------CQCPHCSKSFSRPWLLQGHIRTHTGEKPFK 233
I C C+K F++ L+ HI TH K +
Sbjct: 86 IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 114 bits (288), Expect = 4e-31
Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 219 LQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
G +K F CK C + F NL H +TH+ +P+ C+ C KAF + +L H
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 279 EDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
S EKPFKC+ C K F L H H +
Sbjct: 65 RYIH--------SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 97.5 bits (244), Expect = 7e-25
Identities = 37/142 (26%), Positives = 50/142 (35%), Gaps = 41/142 (28%)
Query: 159 SSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRP 216
SS + R K C CG + F++
Sbjct: 2 SSGSSGGRLPS-----KTKKEFICKFCG--------------------------RHFTKS 30
Query: 217 WLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLY 276
+ L H RTHT E+P+ C +C KAF + +LR H HSK KPF C++CGK F L
Sbjct: 31 YNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLA 90
Query: 277 KHEDSSCLKSYDSSSSEKPFKC 298
H+
Sbjct: 91 VHK--------TLHMQTSSPTA 104
Score = 85.9 bits (214), Expect = 9e-21
Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 33/118 (27%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQIC 204
F C+ CG+H++ S NL H + H T + TC C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTH-----TDERPYTCDICH-------------------- 52
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
K+F R L+ H H+ EKPFKC+ C K F L H H +
Sbjct: 53 ------KAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 59.4 bits (145), Expect = 3e-11
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQI- 423
F C+ CG+H++ S NL H + H T + TC C K + HLR H I
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTH-----TDERPYTCDICHKAF----RRQDHLRDHRYIH 68
Query: 424 -----CQCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K F + L H H
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 45.1 bits (108), Expect = 2e-06
Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 17/78 (21%)
Query: 379 SSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQI------CQCPHCS 430
SS + R K C CG+ + S +L H + C C
Sbjct: 2 SSGSSGGRLPS-----KTKKEFICKFCGRHF----TKSYNLLIHERTHTDERPYTCDICH 52
Query: 431 KSFSRPWLLQGHIRTHTG 448
K+F R L+ H H+
Sbjct: 53 KAFRRQDHLRDHRYIHSK 70
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 115 bits (290), Expect = 7e-31
Identities = 47/163 (28%), Positives = 62/163 (38%), Gaps = 26/163 (15%)
Query: 151 DCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH--------NQ 202
G + I + +R C + + +M H+ N
Sbjct: 2 SSGSSGQPIKQELSCKWID---EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH 58
Query: 203 ICQ---CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHSKV 257
+C CP KSF + L HIR HTGEKPF C C K FA NL+ H +TH+
Sbjct: 59 VCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Query: 258 KPFVC--EKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
KPF C E C + FA S KH +S+K
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHM--------HVHTSDKSGPS 153
Score = 113 bits (285), Expect = 3e-30
Identities = 40/147 (27%), Positives = 51/147 (34%), Gaps = 21/147 (14%)
Query: 209 CSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFV------- 261
S + K CD+ F+ L H+ P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 262 --CEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKV--CDKAFADKSNLRAHIQT 317
C + GK+F K L H + EKPF C C K FA NL+ H +T
Sbjct: 63 EECPREGKSFKAKYKLVNHI--------RVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Query: 318 HSKVKPFVC--EKCGKAFALKSYLYKH 342
H+ KPF C E C + FA S KH
Sbjct: 115 HTGEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 108 bits (273), Expect = 2e-28
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH------RSPDDTKARTCPQCGKLYVSMPAYSMHLRTH 200
+ C + +ST L H + ++ CP+ GK + + H+R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 201 NQ----ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTH 254
C P C K F+R L+ H RTHTGEKPFKC+ CD+ FA+ S+ + H+ H
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Query: 255 SKVKPFVC 262
+ K
Sbjct: 146 TSDKSGPS 153
Score = 66.2 bits (162), Expect = 4e-13
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH------RSPDDTKARTCPQCGKLYVSMPAYSMHLRTH 420
+ C + +ST L H + ++ CP+ GK + + H+R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 421 NQ----ICQCPHCSKSFSRPWLLQGHIRTHTG 448
C P C K F+R L+ H RTHTG
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTG 117
Score = 56.5 bits (137), Expect = 7e-10
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 373 GKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH--------NQIC 424
G S+ + + + +R C + + +M H+ N +C
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 425 Q---CPHCSKSFSRPWLLQGHIRTHTG 448
CP KSF + L HIR HTG
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTG 87
Score = 36.5 bits (85), Expect = 0.006
Identities = 6/36 (16%), Positives = 9/36 (25%), Gaps = 2/36 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGG 449
C ++FS L H+ G
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG 51
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 107 bits (269), Expect = 2e-28
Identities = 45/137 (32%), Positives = 57/137 (41%), Gaps = 33/137 (24%)
Query: 147 FQC--RDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG-KLYVSMPAYSMHLRTHNQI 203
F C C K Y S+L H + H T G K Y
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKH---------T----GEKPYQ--------------- 38
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
C C + FSR L+ H R HTG KPF+CK C + F+ +L+ H +TH+ KPF C
Sbjct: 39 CDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCR 98
Query: 264 K--CGKAFALKSYLYKH 278
C K FA L +H
Sbjct: 99 WPSCQKKFARSDELVRH 115
Score = 94.1 bits (235), Expect = 2e-23
Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 69/175 (39%)
Query: 227 TGEKPFKCK--VCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCL 284
+ ++PF C C+K + S+L+ H + H+
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT----------------------------- 32
Query: 285 KSYDSSSSEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
EKP++C C++ F+ L+ H + H+ VKPF C+ C + F+ +L H
Sbjct: 33 -------GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Query: 343 ------EDSSCLKSYDSSSNGHLNKFTTISFQCR--DCGKHYSTSSNLARHRQIH 389
E K + CR C K ++ S L RH +H
Sbjct: 86 TRTHTGE-----KPF----------------SCRWPSCQKKFARSDELVRHHNMH 119
Score = 81.0 bits (201), Expect = 7e-19
Identities = 38/168 (22%), Positives = 61/168 (36%), Gaps = 60/168 (35%)
Query: 290 SSSEKPFKCK--VCDKAFADKSNLRAHIQTHSKVKPFVCEK--CGKAFALKSYLYKH--- 342
+S ++PF C C+K + S+L+ H + H+ KP+ C+ C + F+ L +H
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 343 ---EDSSCLKSYDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKART 399
K + QC+ C + +S S +L H + H T
Sbjct: 61 HTGV-----KPF----------------QCKTCQRKFSRSDHLKTHTRTH---------T 90
Query: 400 CPQCG-KLYVSMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGHIRTH 446
G K + C+ P C K F+R L H H
Sbjct: 91 ----GEKPFS---------------CRWPSCQKKFARSDELVRHHNMH 119
Score = 80.3 bits (199), Expect = 2e-18
Identities = 38/113 (33%), Positives = 48/113 (42%), Gaps = 35/113 (30%)
Query: 147 FQC--RDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG-KLYVSMPAYSMHLRTHNQI 203
+QC +DC + +S S L RH++ H T G K +
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRH-----T--------GVKPF---------------- 67
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTH 254
QC C + FSR L+ H RTHTGEKPF C+ C K FA L H H
Sbjct: 68 -QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 45.2 bits (108), Expect = 3e-06
Identities = 24/85 (28%), Positives = 28/85 (32%), Gaps = 31/85 (36%)
Query: 367 FQC--RDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG-KLYVSMPAYSMHLRTHNQI 423
F C C K Y S+L H + H T G K Y
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKH---------T----GEKPYQ--------------- 38
Query: 424 CQCPHCSKSFSRPWLLQGHIRTHTG 448
C C + FSR L+ H R HTG
Sbjct: 39 CDFKDCERRFSRSDQLKRHQRRHTG 63
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 102 bits (258), Expect = 4e-27
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
C C + FS+ L HIR HTG+KPF+C++C + F+ +L HI+TH+ KPF C+
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 264 KCGKAFALKSYLYKH 278
CG+ FA +H
Sbjct: 67 ICGRKFARSDERKRH 81
Score = 84.4 bits (210), Expect = 2e-20
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 38/116 (32%)
Query: 229 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKS 286
E+P+ C V CD+ F+ +L HI+ H+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHT------------------------------- 30
Query: 287 YDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+KPF+C++C + F+ +L HI+TH+ KPF C+ CG+ FA +H
Sbjct: 31 -----GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 83.3 bits (207), Expect = 5e-20
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 33/111 (29%)
Query: 147 FQCR--DCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG-KLYVSMPAYSMHLRTHNQI 203
+ C C + +S S +L RH +IH T G K +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIH---------T----GQKPF---------------- 35
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTH 254
QC C ++FSR L HIRTHTGEKPF C +C + FA + H + H
Sbjct: 36 -QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 62.9 bits (154), Expect = 9e-13
Identities = 32/160 (20%), Positives = 48/160 (30%), Gaps = 78/160 (48%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKS 350
E+P+ C V CD+ F+ +L HI+ H+ KPF
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPF-------------------------- 35
Query: 351 YDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYV 408
QCR C +++S S +L H + H T K C CG
Sbjct: 36 -----------------QCRICMRNFSRSDHLTTHIRTH-----TGEKPFACDICG---- 69
Query: 409 SMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ F+R + H + H
Sbjct: 70 ----------------------RKFARSDERKRHTKIHLR 87
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 102 bits (257), Expect = 5e-27
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
QC C ++FSR L HIRTHTGEKPF C +C + FA + H P + +K
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDK 63
Query: 265 CGKAFALKSYLYKH 278
+ + +L
Sbjct: 64 VEELLSKNYHLENE 77
Score = 88.3 bits (220), Expect = 7e-22
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDS 289
KPF+C++C + F+ +L HI+TH+ KPF C+ CG+ FA +H D
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD--------- 52
Query: 290 SSSEKPFKCKVCDKAFADKSNLRAHIQ---TH 318
P ++ + +L +
Sbjct: 53 IQHILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 84.1 bits (209), Expect = 2e-20
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 257 VKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQ 316
+KPF C C + F+ +L H + + EKPF C +C + FA + H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHI--------RTHTGEKPFACDICGRKFARSDERKRHRD 52
Query: 317 THSKVKPFVCEKCGKAFALKSYLYKH 342
P + +K + + +L
Sbjct: 53 IQHI-LPILEDKVEELLSKNYHLENE 77
Score = 77.9 bits (193), Expect = 4e-18
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDS 353
KPF+C++C + F+ +L HI+TH+ KPF C+ CG+ FA +H D
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-------- 53
Query: 354 SSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHR 390
+ S + +L +
Sbjct: 54 ----QHIL----PILEDKVEELLSKNYHLENEVARLK 82
Score = 75.2 bits (186), Expect = 3e-17
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 35/112 (31%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG-KLYVSMPAYSMHLRTHNQICQ 205
FQCR C +++S S +L H + H T G K +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH-----T--------GEKPF-----------------A 33
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQ---TH 254
C C + F+R + H P ++ + +L +
Sbjct: 34 CDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 62.9 bits (154), Expect = 9e-13
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 19/92 (20%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQI- 423
FQCR C +++S S +L H + H T K C CG+ + A S + H I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH-----TGEKPFACDICGRKF----ARSDERKRHRDIQ 54
Query: 424 ----CQCPHCSKSFSRPWLL---QGHIRTHTG 448
+ S+ + L ++ G
Sbjct: 55 HILPILEDKVEELLSKNYHLENEVARLKKLVG 86
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 101 bits (253), Expect = 2e-26
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 226 HTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLK 285
+G C++C K F D +L H +HS KP+ C CG F K + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH------V 55
Query: 286 SYDSSSSEKPFKCKVCDKAFADKSNLRAHIQ-THS 319
S KP+ C+ C K F+ +L HI+ HS
Sbjct: 56 RSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 96.4 bits (241), Expect = 1e-24
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHS--KVKPFVC 262
C C K F + L H +H+GEKP+ C VC F K + H+++H KP++C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 263 EKCGKAFALKSYLYKH 278
+ CGK F+ +L H
Sbjct: 69 QSCGKGFSRPDHLNGH 84
Score = 83.3 bits (207), Expect = 5e-20
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 20/101 (19%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHE---DSSCLK 349
C++C K F D +L H +HS KP+ C CG F K + H D S K
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 350 SYDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQ-IH 389
Y C+ CGK +S +L H + +H
Sbjct: 65 PY----------------ICQSCGKGFSRPDHLNGHIKQVH 89
Score = 79.1 bits (196), Expect = 2e-18
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 36/114 (31%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQIC 204
C CGK + +L RH+ H + K +CP CG
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSH-----SGEKPYSCPVCG-------------------- 42
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGE--KPFKCKVCDKAFADKSNLRAHIQ-THS 255
F R + H+R+H G KP+ C+ C K F+ +L HI+ HS
Sbjct: 43 ------LRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 47.5 bits (114), Expect = 2e-07
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 33/84 (39%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQIC 424
C CGK + +L RH+ H + K +CP CG
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSH-----SGEKPYSCPVCG-------------------- 42
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
F R + H+R+H G
Sbjct: 43 ------LRFKRKDRMSYHVRSHDG 60
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 99.1 bits (248), Expect = 9e-26
Identities = 25/115 (21%), Positives = 34/115 (29%), Gaps = 32/115 (27%)
Query: 219 LQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
RTHTGEKP+ C CDK F K L H + +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH----------------------- 39
Query: 279 EDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAF 333
D + F C C K F ++ + H + E G +
Sbjct: 40 ---------DPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 86.0 bits (214), Expect = 5e-21
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 10/84 (11%)
Query: 196 HLRTHNQI------CQCPHCSKSFSRPWLLQGHIRTHTGE----KPFKCKVCDKAFADKS 245
+ + C HC K+F + LL H + + F C C K F ++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 246 NLRAHIQTHSKVKPFVCEKCGKAF 269
+ H + E G +
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 74.1 bits (183), Expect = 1e-16
Identities = 14/96 (14%), Positives = 25/96 (26%), Gaps = 27/96 (28%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH-RSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQ 205
+ C C K + L H + + A C +CG
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCG--------------------- 54
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAF 241
K+F+R + H G + + +
Sbjct: 55 -----KTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 62.2 bits (152), Expect = 1e-12
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 24/101 (23%)
Query: 310 NLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHE-----DSSCLKSYDSSSNGHLNKFTT 364
+ + +TH+ KP+ C C K F K L H + ++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAF------------- 48
Query: 365 ISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGK 405
C CGK ++ + +ARH P G
Sbjct: 49 ---VCSKCGKTFTRRNTMARHADNCAGP---DGVEGENSGP 83
Score = 49.8 bits (120), Expect = 3e-08
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 27/83 (32%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH-RSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQ 425
+ C C K + L H + + A C +CG
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCG--------------------- 54
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
K+F+R + H G
Sbjct: 55 -----KTFTRRNTMARHADNCAG 72
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 97.6 bits (244), Expect = 4e-25
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 198 RTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHS 255
RT C C K++++ L+ H+RTHTGEKP+ C C FA L H + H+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 256 KVKPFVCEKCGKAFALKSYLYKH 278
+PF C+KC +AF+ +L H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALH 84
Score = 82.6 bits (205), Expect = 1e-19
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 179 TCPQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
CGK Y HLRTH C C F+R L H R HTG +PF+C
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC 68
Query: 235 KVCDKAFADKSNLRAHIQTH 254
+ CD+AF+ +L H++ H
Sbjct: 69 QKCDRAFSRSDHLALHMKRH 88
Score = 79.1 bits (196), Expect = 1e-18
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 34/117 (29%)
Query: 226 HTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLK 285
T C K + S+L+AH++TH+ KP+ C+ G
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDG------------------- 42
Query: 286 SYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
C FA L H + H+ +PF C+KC +AF+ +L H
Sbjct: 43 ---------------CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 84
Score = 65.6 bits (161), Expect = 1e-13
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKHEDSSCLKS 350
C K + S+L+AH++TH+ KP+ C + CG FA L +H
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK----- 59
Query: 351 YDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIH 389
H FQC+ C + +S S +LA H + H
Sbjct: 60 -------HTGH---RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 46.0 bits (110), Expect = 8e-07
Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 399 TCPQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTG 448
CGK Y HLRTH C C F+R L H R HTG
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Score = 39.8 bits (94), Expect = 1e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 418 RTHNQICQCPHCSKSFSRPWLLQGHIRTHTG 448
RT C C K++++ L+ H+RTHTG
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTG 32
Score = 37.1 bits (87), Expect = 0.001
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 147 FQC--RDCGKHYSTSSNLARHRQIHRSPDDTKAR--TCPQCGKLYVSMPAYSMHLRTH 200
+ C CG ++ S L RH + H T R C +C + + ++H++ H
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKH-----TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 96.9 bits (242), Expect = 8e-25
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 196 HLRTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC--KVCDKAFADKSNLRAHIQT 253
R H C P C+K +++ L+ H+RTHTGEKP+KC + CD FA L H +
Sbjct: 12 KRRIH--YCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 254 HSKVKPFVCEKCGKAFALKSYLYKH 278
H+ KPF C C ++F+ +L H
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALH 94
Score = 85.4 bits (212), Expect = 1e-20
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 157 STSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKS 212
+S R+IH P C K+Y HLRTH C C
Sbjct: 4 GSSGPDLEKRRIHYCD-------YPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWR 56
Query: 213 FSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTH 254
F+R L H R HTG KPF+C VC+++F+ +L H++ H
Sbjct: 57 FARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 78.4 bits (194), Expect = 3e-18
Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 38/131 (29%)
Query: 212 SFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFAL 271
S R H + P C K + S+L+AH++TH+ KP+ C G
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEG----- 52
Query: 272 KSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGK 331
CD FA L H + H+ KPF C C +
Sbjct: 53 -----------------------------CDWRFARSDELTRHYRKHTGAKPFQCGVCNR 83
Query: 332 AFALKSYLYKH 342
+F+ +L H
Sbjct: 84 SFSRSDHLALH 94
Score = 53.0 bits (128), Expect = 3e-09
Identities = 33/165 (20%), Positives = 49/165 (29%), Gaps = 72/165 (43%)
Query: 285 KSYDSSSSEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
S + C C K + S+L+AH++TH+ KP+ C G
Sbjct: 5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEG------------ 52
Query: 343 EDSSCLKSYDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQ 402
C ++ S L RH + H T A
Sbjct: 53 -----------------------------CDWRFARSDELTRHYRKH-----TGA----- 73
Query: 403 CGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGHIRTHT 447
K + QC C++SFSR L H++ H
Sbjct: 74 --KPF-----------------QCGVCNRSFSRSDHLALHMKRHQ 99
Score = 48.4 bits (116), Expect = 2e-07
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 377 STSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKS 432
+S R+IH P C K+Y HLRTH C C
Sbjct: 4 GSSGPDLEKRRIHYCD-------YPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWR 56
Query: 433 FSRPWLLQGHIRTHTG 448
F+R L H R HTG
Sbjct: 57 FARSDELTRHYRKHTG 72
Score = 48.0 bits (115), Expect = 2e-07
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 152 CGKHYSTSSNLARHRQIHRSPDDTKAR----TCPQCGKLYVSMPAYSMHLRTHNQI--CQ 205
C K Y+ SS+L H + H T + T C + + H R H Q
Sbjct: 23 CTKVYTKSSHLKAHLRTH-----TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 206 CPHCSKSFSRPWLLQGHIRTHT 227
C C++SFSR L H++ H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQ 99
Score = 33.4 bits (77), Expect = 0.025
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRS 171
FQC C + +S S +LA H + H++
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRHQN 100
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 92.2 bits (230), Expect = 2e-23
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 219 LQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHS--KVKPFVCEKCGKAFALKSYLY 276
RTH+GEKP++C +C F ++ HI V F C C A KS L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 277 KH 278
H
Sbjct: 63 VH 64
Score = 76.0 bits (188), Expect = 1e-17
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGE--KPFKCKVCDKAFADKSNLRAHI 251
RTH+ + +C C F++ ++ HI E F C CD A KS+L H+
Sbjct: 6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Query: 252 QT-HSKVKPF 260
+ HS P
Sbjct: 66 RKQHSYSGPS 75
Score = 72.9 bits (180), Expect = 2e-16
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHS--KVKPFVCEKCGKAFALKSYLYKH 342
EKP++C +C F ++ HI V F C C A KS L H
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 54.5 bits (132), Expect = 7e-10
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 28/87 (32%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQC 206
++C C ++ S + H + + + C
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHT----------ENVAKF-----------------HC 48
Query: 207 PHCSKSFSRPWLLQGHIRT-HTGEKPF 232
PHC +R L H+R H+ P
Sbjct: 49 PHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 52.9 bits (128), Expect = 2e-09
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 14/81 (17%)
Query: 310 NLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSNGHLNKFTTISFQC 369
+ + +THS KP+ C C F + H + F C
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI---------LQKHTENVA----KFHC 48
Query: 370 RDCGKHYSTSSNLARH-RQIH 389
C + S+L H R+ H
Sbjct: 49 PHCDTVIARKSDLGVHLRKQH 69
Score = 46.7 bits (112), Expect = 4e-07
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 12/75 (16%)
Query: 381 NLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQIC----QCPHCSKSFS 434
+ + H + K C C + MH+ + CPHC +
Sbjct: 2 SSGSSGRTH-----SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA 56
Query: 435 RPWLLQGHIRT-HTG 448
R L H+R H+
Sbjct: 57 RKSDLGVHLRKQHSY 71
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 92.1 bits (230), Expect = 3e-23
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
C C KSF R L H+ H+ +P+ C+ C K F KS+++ H H+ KP C+
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 265 CGKAFALKSYLYKH 278
CGKAF+ S L H
Sbjct: 63 CGKAFSQSSNLITH 76
Score = 81.7 bits (203), Expect = 2e-19
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 232 FKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSS 291
F CK+C K+F S L H+ HS +P+ C+ CGK F KS + KH +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT--------FIHT 53
Query: 292 SEKPFKCKVCDKAFADKSNLRAHIQTH 318
EKP KC+VC KAF+ SNL H + H
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 80.5 bits (200), Expect = 4e-19
Identities = 38/109 (34%), Positives = 48/109 (44%), Gaps = 29/109 (26%)
Query: 146 SFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQ 205
SF C+ CGK + SS L+ H IH DT+ C CG
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIH---SDTRPYPCQYCG--------------------- 36
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTH 254
K F + ++ H HTGEKP KC+VC KAF+ SNL H + H
Sbjct: 37 -----KRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 77.1 bits (191), Expect = 7e-18
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 260 FVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHS 319
F C+ CGK+F S L H S +P+ C+ C K F KS+++ H H+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH--------SDTRPYPCQYCGKRFHQKSDMKKHTFIHT 53
Query: 320 KVKPFVCEKCGKAFALKSYLYKH 342
KP C+ CGKAF+ S L H
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITH 76
Score = 59.0 bits (144), Expect = 2e-11
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQI-- 423
SF C+ CGK + SS L+ H IH DT+ C CGK + ++ H I
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIH---SDTRPYPCQYCGKRF----HQKSDMKKHTFIHT 53
Query: 424 ----CQCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+FS+ L H R HTG
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 90.3 bits (225), Expect = 1e-22
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 204 CQCPHCSKSFSRPWLLQGHIR-THTGEKPFKCK--VCDKAFADKSNLRAHIQTHSKVKPF 260
C P C + FS L H + H +K F C C K+F K +L+ H++ HS + +
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 261 VCEKCGKAF 269
+CE G +
Sbjct: 70 ICEFSGPSS 78
Score = 82.6 bits (205), Expect = 7e-20
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 37/111 (33%)
Query: 226 HTGEKPFKCKV--CDKAFADKSNLRAHI-QTHSKVKPFVCEKCGKAFALKSYLYKHEDSS 282
+G C C + F+++ L H H K F C +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPA---------------- 45
Query: 283 CLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAF 333
C K+F K +L+ H++ HS + ++CE G +
Sbjct: 46 ------------------CGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 66.8 bits (164), Expect = 3e-14
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 179 TCPQCGKLYVSMPAYSMHLRTHNQI---------CQCPHCSKSFSRPWLLQGHIRTHTGE 229
P CG+++ + +L H + C P C KSF+ L+ H++ H+
Sbjct: 11 DFPGCGRIF----SNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 230 KPFKCKVCDKAF 241
+ + C+ +
Sbjct: 67 RDYICEFSGPSS 78
Score = 55.2 bits (134), Expect = 3e-10
Identities = 19/116 (16%), Positives = 30/116 (25%), Gaps = 47/116 (40%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHI-QTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLK 349
C C + F+++ L H H K F C +
Sbjct: 5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPA------------------- 45
Query: 350 SYDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGK 405
CGK ++ +L H ++H DT+ C G
Sbjct: 46 ----------------------CGKSFNFKKHLKEHMKLHS---DTRDYICEFSGP 76
Score = 41.8 bits (99), Expect = 2e-05
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 399 TCPQCGKLYVSMPAYSMHLRTHNQI---------CQCPHCSKSFSRPWLLQGHIRTHTG 448
P CG+++ + +L H + C P C KSF+ L+ H++ H+
Sbjct: 11 DFPGCGRIF----SNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Score = 37.5 bits (88), Expect = 7e-04
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 147 FQC--RDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGK 185
F C CGK ++ +L H ++H DT+ C G
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHS---DTRDYICEFSGP 76
Score = 31.8 bits (73), Expect = 0.059
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 424 CQCPHCSKSFSRPWLLQGHIR-THTG 448
C P C + FS L H + H
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIH 35
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 86.5 bits (215), Expect = 3e-21
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFV 261
C +C K+F + L+ H +HT + P++C CDK F+ S L+ H + H+
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 63
Query: 262 CEKCGKAFALKSYLYKH 278
+ C + KH
Sbjct: 64 DDSCSFVGKTWTLYLKH 80
Score = 69.2 bits (170), Expect = 4e-15
Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 179 TCPQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
CGK + +H +H Q C C K FS P L+ H + H G K
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 235 KVCDKAFADKSNLRAHIQ-TH 254
C + H+ H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 62.3 bits (152), Expect = 1e-12
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 262 CEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKV--CDKAFADKSNLRAHIQTHS 319
E CGKAF + L H+ S + + P++C CDK F+ S L+ H + H+
Sbjct: 6 FENCGKAFKKHNQLKVHQFSH--------TQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Query: 320 KVKPFVCEKCGKAFALKSYLYKH 342
+ C + KH
Sbjct: 58 GYPCKKDDSCSFVGKTWTLYLKH 80
Score = 51.9 bits (125), Expect = 6e-09
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 296 FKCKV--CDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKHEDSSCLKSY 351
+ C C KAF + L+ H +H++ P+ C E C K F+L S L +HE
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV------ 55
Query: 352 DSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIH 389
H C GK ++ L + H
Sbjct: 56 ------HAGYPCKKDDSCSFVGKTWTLY--LKHVAECH 85
Score = 44.5 bits (106), Expect = 2e-06
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 399 TCPQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTG 448
CGK + +H +H Q C C K FS P L+ H + H G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 40.7 bits (96), Expect = 5e-05
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 147 FQC--RDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH 200
++C C K +S S L RH ++H K +C GK + + H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH--VAECH 85
Score = 35.3 bits (82), Expect = 0.005
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 424 CQCPHCSKSFSRPWLLQGHIRTHTG 448
C +C K+F + L+ H +HT
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQ 28
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 86.0 bits (214), Expect = 4e-21
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 219 LQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
H +KP+KC C +F K NL +H H+ KP+ C CG F + L H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 75.2 bits (186), Expect = 3e-17
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 194 SMHLRTHNQI------CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNL 247
H H+ + +C C SF L H HTGEKP++C +C F +NL
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 248 RAHIQTHSKVKPF 260
+ H + HS KP+
Sbjct: 62 KTHTRIHSGEKPY 74
Score = 69.4 bits (171), Expect = 3e-15
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+KP+KC C +F K NL +H H+ KP+ C CG F + L H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 51.7 bits (125), Expect = 6e-09
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 31/87 (35%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG-KLYVSMPAYSMHLRTHNQICQ 205
++C C + NLA H+ +H G K Y +
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVH-------------TGEKPY-----------------R 47
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPF 232
C C F+RP L+ H R H+GEKP+
Sbjct: 48 CNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 46.7 bits (112), Expect = 4e-07
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 17/78 (21%)
Query: 379 SSNLARHRQIHRSPDDT--KARTCPQCGKLYVSMPAYSMHLRTHNQI------CQCPHCS 430
+ H + K C +C + Y +L +H + +C C
Sbjct: 2 GHHHHHHSHMT-----HSDKPYKCDRCQASF----RYKGNLASHKTVHTGEKPYRCNICG 52
Query: 431 KSFSRPWLLQGHIRTHTG 448
F+RP L+ H R H+G
Sbjct: 53 AQFNRPANLKTHTRIHSG 70
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 84.1 bits (209), Expect = 2e-20
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 224 RTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+ + P KC C + + K+ LR H + H +PF C C S L KH
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 74.5 bits (184), Expect = 4e-17
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKC 265
C CS S S L+ H R H ++PFKC C SNL H++
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS--GPSS 69
Query: 266 G 266
G
Sbjct: 70 G 70
Score = 71.8 bits (177), Expect = 4e-16
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 291 SSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
SS P KC C + + K+ LR H + H +PF C C S L KH
Sbjct: 5 SSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 47.9 bits (115), Expect = 9e-08
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 31/89 (34%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG-KLYVSMPAYSMHLRTHNQICQ 205
+C +C S+ + L H +IH C + + +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIH-------------CTDRPF-----------------K 39
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C +CS +P L H++ G+
Sbjct: 40 CNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 47.1 bits (113), Expect = 2e-07
Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 32/94 (34%)
Query: 317 THSKVKPFVCEKCGKAFALKSYLYKH------EDSSCLKSYDSSSNGHLNKFTTISFQCR 370
+ S P C +C + + K+ L H + + + +C
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTD-----RPF----------------KCN 41
Query: 371 DCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG 404
C SNL++H + + P G
Sbjct: 42 YCSFDTKQPSNLSKHMKKF-----HGDMSGPSSG 70
Score = 41.7 bits (99), Expect = 2e-05
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 31/83 (37%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG-KLYVSMPAYSMHLRTHNQICQ 425
+C +C S+ + L H +IH C + + +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIH-------------CTDRPF-----------------K 39
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C +CS +P L H++ G
Sbjct: 40 CNYCSFDTKQPSNLSKHMKKFHG 62
Score = 32.1 bits (74), Expect = 0.038
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 5/38 (13%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG 184
F+C C SNL++H + + P G
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKF-----HGDMSGPSSG 70
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 83.8 bits (208), Expect = 2e-20
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 224 RTHTGEKPFKCKVCDKAFADKSNLRAHIQT--HSKVKPFVCEKCGKAFALKSYLYKHE 279
T GE ++CKVC + + SN H T VK + C C K F K + H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 73.7 bits (182), Expect = 8e-17
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 205 QCPHCSKSFSRPWLLQGHIRT--HTGEKPFKCKVCDKAFADKSNLRAHIQTHSKV 257
+C CS+ ++ H T K + C C K F K N+ AH++ K+
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 70.3 bits (173), Expect = 1e-15
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQT--HSKVKPFVCEKCGKAFALKSYLYKHE 343
E ++CKVC + + SN H T VK + C C K F K + H
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 49.9 bits (120), Expect = 2e-08
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 27/82 (32%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQC 206
++C+ C + Y+ SN RH + K+Y C
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNV----------KVY-----------------PC 43
Query: 207 PHCSKSFSRPWLLQGHIRTHTG 228
P C K F+R + H++
Sbjct: 44 PFCFKEFTRKDNMTAHVKIIHK 65
Score = 49.9 bits (120), Expect = 2e-08
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 27/82 (32%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQC 426
++C+ C + Y+ SN RH + K+Y C
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNV----------KVY-----------------PC 43
Query: 427 PHCSKSFSRPWLLQGHIRTHTG 448
P C K F+R + H++
Sbjct: 44 PFCFKEFTRKDNMTAHVKIIHK 65
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 80.6 bits (200), Expect = 3e-19
Identities = 26/61 (42%), Positives = 35/61 (57%)
Query: 219 LQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
G H+GEKP+ C C KAF+ S L H + H+ KP+ C +CGKAF+ S L H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 279 E 279
+
Sbjct: 62 Q 62
Score = 68.7 bits (169), Expect = 5e-15
Identities = 25/56 (44%), Positives = 31/56 (55%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 260
C C K+FSR +L H R HTGEKP+KC C KAF+ S L H + H+
Sbjct: 16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 65.6 bits (161), Expect = 6e-14
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
EKP+ C C KAF+ S L H + H+ KP+ C +CGKAF+ S L H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 53.6 bits (130), Expect = 1e-09
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 27/85 (31%)
Query: 311 LRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH------EDSSCLKSYDSSSNGHLNKFTT 364
HS KP+ C +CGKAF+ S L +H E K Y
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE-----KPY------------- 43
Query: 365 ISFQCRDCGKHYSTSSNLARHRQIH 389
+C +CGK +S +S L H++IH
Sbjct: 44 ---KCLECGKAFSQNSGLINHQRIH 65
Score = 50.9 bits (123), Expect = 9e-09
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 31/87 (35%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG-KLYVSMPAYSMHLRTHNQICQ 205
+ C +CGK +S SS L +H+++H G K Y +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHT-------------GEKPY-----------------K 44
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPF 232
C C K+FS+ L H R HT
Sbjct: 45 CLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 42.1 bits (100), Expect = 1e-05
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 31/83 (37%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG-KLYVSMPAYSMHLRTHNQICQ 425
+ C +CGK +S SS L +H+++H G K Y +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHT-------------GEKPY-----------------K 44
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C K+FS+ L H R HT
Sbjct: 45 CLECGKAFSQNSGLINHQRIHTS 67
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 80.6 bits (200), Expect = 3e-19
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 219 LQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+ +KC C K+F+ S+L H +TH+ KP+ C++CGKAF +S+L H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 69.0 bits (170), Expect = 4e-15
Identities = 27/56 (48%), Positives = 33/56 (58%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 260
+C C KSFS L H RTHTGEKP+KC C KAF +S+L H + H+ P
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 67.1 bits (165), Expect = 2e-14
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 242 ADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVC 301
+ + + + C++CGK+F+ S L KH + + EKP+KC C
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR--------RTHTGEKPYKCDEC 52
Query: 302 DKAFADKSNLRAHIQTHSKVKPF 324
KAF +S+L H + H+ P
Sbjct: 53 GKAFIQRSHLIGHHRVHTGSGPS 75
Score = 65.5 bits (161), Expect = 8e-14
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ +KC C K+F+ S+L H +TH+ KP+ C++CGKAF +S+L H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 56.7 bits (138), Expect = 1e-10
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 159 SSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQI------CQCPHCSKS 212
S + R R + C +CGK + ++S L H + +C C K+
Sbjct: 3 SGSSGRSEWQQRE---RRRYKCDECGKSF----SHSSDLSKHRRTHTGEKPYKCDECGKA 55
Query: 213 FSRPWLLQGHIRTHTGEKPFK 233
F + L GH R HTG P
Sbjct: 56 FIQRSHLIGHHRVHTGSGPSS 76
Score = 55.9 bits (136), Expect = 2e-10
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 27/90 (30%)
Query: 306 ADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH------EDSSCLKSYDSSSNGHL 359
+ + + + C++CGK+F+ S L KH E K Y
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE-----KPY-------- 47
Query: 360 NKFTTISFQCRDCGKHYSTSSNLARHRQIH 389
+C +CGK + S+L H ++H
Sbjct: 48 --------KCDECGKAFIQRSHLIGHHRVH 69
Score = 45.5 bits (109), Expect = 8e-07
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 379 SSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQI------CQCPHCSKS 432
S + R R + C +CGK + ++S L H + +C C K+
Sbjct: 3 SGSSGRSEWQQRE---RRRYKCDECGKSF----SHSSDLSKHRRTHTGEKPYKCDECGKA 55
Query: 433 FSRPWLLQGHIRTHTG 448
F + L GH R HTG
Sbjct: 56 FIQRSHLIGHHRVHTG 71
Score = 33.2 bits (77), Expect = 0.018
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK + S+L H ++H
Sbjct: 47 YKCDECGKAFIQRSHLIGHHRVH 69
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 80.1 bits (198), Expect = 6e-19
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 34/110 (30%)
Query: 226 HTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLK 285
+G +C++C K++L H + H++
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETV--------------------------- 34
Query: 286 SYDSSSSEKPFKCKVCDKAFADKSNLRAHIQT-HSKVKPFVCEKCGKAFA 334
+ F C+ C K F ++ AH H + E G +
Sbjct: 35 ------AALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSSG 78
Score = 74.7 bits (184), Expect = 4e-17
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHT---GEKPFKCKVCDKAFADKSNLRAHIQT-HSKVKPF 260
QC C + + L H R H F C+ C K F ++ AH H +
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA 68
Query: 261 VCEKCGKAFA 270
E G +
Sbjct: 69 PQESSGPSSG 78
Score = 70.5 bits (173), Expect = 1e-15
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 290 SSSEKPFKCKVCDKAFADKSNLRAHIQTHSKV---KPFVCEKCGKAFALKSYLYKH 342
SS +C++C K++L H + H++ F CE CGK F + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Score = 50.1 bits (120), Expect = 2e-08
Identities = 14/93 (15%), Positives = 21/93 (22%), Gaps = 26/93 (27%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQC 206
QC CG ++L H++ H C CG
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCG---------------------- 45
Query: 207 PHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDK 239
K F +P + H +
Sbjct: 46 ----KRFEKPDSVAAHRSKSHPALLLAPQESSG 74
Score = 49.7 bits (119), Expect = 3e-08
Identities = 12/54 (22%), Positives = 19/54 (35%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH 420
QC CG ++L H++ H C CGK + + + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 33.1 bits (76), Expect = 0.022
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
QC C + + L H R H
Sbjct: 9 QCEICGFTCRQKASLNWHQRKHAE 32
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 72.1 bits (178), Expect = 2e-16
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQ-THS 255
C C+++F+R L+ H R+HT EKP+ C +C++AF + L H Q HS
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 67.5 bits (166), Expect = 1e-14
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 279
+ F C+VC +AFA + +L+ H ++H+ KP+ C C +AF + L +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 67.5 bits (166), Expect = 1e-14
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ F C+VC +AFA + +L+ H ++H+ KP+ C C +AF + L +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 62.9 bits (154), Expect = 4e-13
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 258 KPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQ- 316
+ FVCE C +AFA + +L +H S ++EKP+ C +C++AF + L H Q
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH--------TNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Query: 317 THS 319
HS
Sbjct: 53 IHS 55
Score = 45.9 bits (110), Expect = 3e-07
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 32/86 (37%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKAR--TCPQCGKLYVSMPAYSMHLRTHNQIC 204
F C C + ++ +L RH + H T + C C + + L H Q
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH-----TNEKPYPCGLCNRAF----TRRDLLIRHAQ-- 51
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEK 230
+ H+G
Sbjct: 52 -------------------KIHSGNL 58
Score = 43.2 bits (103), Expect = 3e-06
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKAR--TCPQCGKLYVSMPAYSMHLRTHNQ 422
F C C + ++ +L RH + H T + C C + + L H Q
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH-----TNEKPYPCGLCNRAF----TRRDLLIRHAQ 51
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 71.6 bits (176), Expect = 5e-16
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 196 HLRTHNQ--ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQT 253
++ + C C + FSR L HIR HTG+KPF+C++C + F+ +L HI+T
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Query: 254 HS 255
H+
Sbjct: 72 HT 73
Score = 60.4 bits (147), Expect = 4e-12
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 219 LQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLY 276
L ++ +P+ C V CD+ F+ L HI+ H+ KPF C C + F+ +L
Sbjct: 9 LLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 277 KH 278
H
Sbjct: 67 TH 68
Score = 54.6 bits (132), Expect = 5e-10
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+P+ C V CD+ F+ L HI+ H+ KPF C C + F+ +L H
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 54.2 bits (131), Expect = 8e-10
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 245 SNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCD 302
+NL ++ + P+ C E C + F+ L +H + +KPF+C++C
Sbjct: 7 NNLLNYVVPKMR--PYACPVESCDRRFSRSDELTRH--------IRIHTGQKPFQCRICM 56
Query: 303 KAFADKSNLRAHIQTHS 319
+ F+ +L HI+TH+
Sbjct: 57 RNFSRSDHLTTHIRTHT 73
Score = 38.4 bits (90), Expect = 2e-04
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 377 STSSNLARHRQIHRSPDDTKARTCP--QCGKLYVSMPAYSMHLRTHNQI--CQCPHCSKS 432
+NL + + CP C + + + H+R H QC C ++
Sbjct: 4 HPMNNLLNYVVPK-----MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
Query: 433 FSRPWLLQGHIRTHT 447
FSR L HIRTHT
Sbjct: 59 FSRSDHLTTHIRTHT 73
Score = 36.9 bits (86), Expect = 8e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 416 HLRTHNQ--ICQCPHCSKSFSRPWLLQGHIRTHTG 448
++ + C C + FSR L HIR HTG
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTG 46
Score = 36.9 bits (86), Expect = 9e-04
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 31/83 (37%)
Query: 147 FQCR--DCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQIC 204
+ C C + +S S L RH +IH T K +
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIH-----TGQ-------KPF----------------- 50
Query: 205 QCPHCSKSFSRPWLLQGHIRTHT 227
QC C ++FSR L HIRTHT
Sbjct: 51 QCRICMRNFSRSDHLTTHIRTHT 73
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 69.5 bits (171), Expect = 2e-15
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQ-THSKVKPFVCEKCGKAFA 270
+ + KP+ C+ C K F+ +L HI+ H+ +P C+ +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 61.4 bits (150), Expect = 1e-12
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 291 SSEKPFKCKVCDKAFADKSNLRAHIQ-THSKVKPFVCEKCGKAFA 334
S KP+ C+ C K F+ +L HI+ H+ +P C+ +
Sbjct: 8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 61.1 bits (149), Expect = 2e-12
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 206 CPHCSKSFSRPWLLQGHI-RTHTGEKPFKCKVCDKAFAD 243
C C K FSRP L GHI + HT E+P KC+V +
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 55.7 bits (135), Expect = 1e-10
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 249 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFAD 307
+ + S KP++C+ CGK F+ +L H +SE+P KC+V +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQ-------VHTSERPHKCQVWVSGPSS 53
Score = 38.7 bits (91), Expect = 1e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + S KP++C+ CGK F+ +L H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGH 31
Score = 34.1 bits (79), Expect = 0.005
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 147 FQCRDCGKHYSTSSNLARH-RQIHRSPDDT--KARTCPQCGK 185
+ C+ CGK +S +L H +Q+H T + C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVH-----TSERPHKCQVWVS 49
Score = 34.1 bits (79), Expect = 0.005
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 367 FQCRDCGKHYSTSSNLARH-RQIHRSPDDT--KARTCPQCGK 405
+ C+ CGK +S +L H +Q+H T + C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVH-----TSERPHKCQVWVS 49
Score = 32.9 bits (76), Expect = 0.016
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 426 CPHCSKSFSRPWLLQGHI-RTHTG 448
C C K FSRP L GHI + HT
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTS 38
Score = 29.5 bits (67), Expect = 0.23
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 11/43 (25%)
Query: 179 TCPQCGKLYVSMPAYSMHLRTHNQI-------CQCPHCSKSFS 214
C CGK + + HL H + +C S
Sbjct: 14 ICQSCGKGF----SRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 29.5 bits (67), Expect = 0.23
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 11/43 (25%)
Query: 399 TCPQCGKLYVSMPAYSMHLRTHNQI-------CQCPHCSKSFS 434
C CGK + + HL H + +C S
Sbjct: 14 ICQSCGKGF----SRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 67.5 bits (164), Expect = 5e-14
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 3/101 (2%)
Query: 219 LQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+ + TG F+CK C A+ L H+ + + + +
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 279 EDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHS 319
S L+ ++K KC C +F +L H+
Sbjct: 66 --RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 59.0 bits (142), Expect = 5e-11
Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Query: 245 SNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKA 304
S+ + + + F C+ C A+ L H + + D+ + +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDN---HETDNNNPKRWS 61
Query: 305 FADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
K +L K C CG +F L H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 58.2 bits (140), Expect = 8e-11
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 10/106 (9%)
Query: 157 STSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH-------NQICQCPHC 209
S+ S+ + I C C Y ++ ++H+ ++
Sbjct: 2 SSGSSGKLYGSIFTG---ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPK 58
Query: 210 SKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
S R L +K KC C +F +L H+
Sbjct: 59 RWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 52.8 bits (126), Expect = 6e-09
Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 13/113 (11%)
Query: 309 SNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSNGHLNKFTTISFQ 368
S+ + + + F C+ C A+ L H + + GH + + +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNET----------GH---YRDDNHE 51
Query: 369 CRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHN 421
+ + ++ D K C CG + S+ S+H+
Sbjct: 52 TDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 42.8 bits (100), Expect = 2e-05
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 350 SYDSSSNGHLNKFT-TISFQCRDCGKHYSTSSNLARHRQI--HRSPDDTKARTCPQCGKL 406
S SS + + FT F+C+DC Y T L H H D+ +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 407 YVSMPAYSMHLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHT 447
+ ++ +C +C SF L H+
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 34.4 bits (78), Expect = 0.015
Identities = 16/86 (18%), Positives = 22/86 (25%), Gaps = 30/86 (34%)
Query: 146 SFQCRDCGKHYSTSSNLARHRQI------------------------------HRSPDDT 175
F+C+DC Y T L H D
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 176 KARTCPQCGKLYVSMPAYSMHLRTHN 201
K C CG + S+ S+H+
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTK 104
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 63.7 bits (156), Expect = 2e-13
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 221 GHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 260
G + GEKP+ C++C F L++H++ H+ P
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 47.5 bits (114), Expect = 6e-08
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 324
EKP+ C++C F L++H++ H+ P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 46.0 bits (110), Expect = 2e-07
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPF 232
C C F L+ H+R HTG P
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 38.2 bits (90), Expect = 1e-04
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ KP+ CE CG F L H
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSH 30
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C F L+ H+R HTG
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIHTG 36
Score = 32.9 bits (76), Expect = 0.010
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C CG + L H +IH
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
Score = 32.9 bits (76), Expect = 0.010
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C CG + L H +IH
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIH 34
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 63.3 bits (155), Expect = 2e-13
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 221 GHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 260
G + GEKP+KC+ C F ++LRAH+ H+ P
Sbjct: 1 GSSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 324
EKP+KC+ C F ++LRAH+ H+ P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 43.7 bits (104), Expect = 1e-06
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPF 232
+C C F + L+ H+ HTG P
Sbjct: 13 KCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ KP+ CE CG F ++L H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 35.2 bits (82), Expect = 0.002
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C F + L+ H+ HTG
Sbjct: 13 KCETCGARFVQVAHLRAHVLIHTG 36
Score = 32.1 bits (74), Expect = 0.018
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C CG + ++L H IH
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIH 34
Score = 32.1 bits (74), Expect = 0.018
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C CG + ++L H IH
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIH 34
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 3e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGEKP+KC C KAF KS L H Q+H+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 47.9 bits (115), Expect = 6e-08
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP+KC C KAF KS L H Q+H+ +
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 196 HLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K+F+R L H ++HTGE+
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 36.7 bits (86), Expect = 6e-04
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KP+ C CGKAF KS L+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 32.9 bits (76), Expect = 0.013
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C DCGK ++ S L H+Q H
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSH 35
Score = 32.9 bits (76), Expect = 0.013
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C DCGK ++ S L H+Q H
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSH 35
Score = 30.2 bits (69), Expect = 0.096
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 416 HLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K+F+R L H ++HTG
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 4e-13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGEKPF+CK C F+ +L H+++H + P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 48.0 bits (115), Expect = 5e-08
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKPF+CK C F+ +L H+++H + P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 47.6 bits (114), Expect = 7e-08
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
QC C +FS L H+R+H P
Sbjct: 14 QCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 41.8 bits (99), Expect = 9e-06
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 249 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
+ + + KPF C++CG F+ L+KH S P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHL--------RSHERTDPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ + + KPF C++CG F+ L+KH
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
Score = 36.4 bits (85), Expect = 7e-04
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
QC C +FS L H+R+H
Sbjct: 14 QCKECGMNFSWSCSLFKHLRSHER 37
Score = 35.3 bits (82), Expect = 0.002
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
FQC++CG ++S S +L +H + H
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSH 35
Score = 35.3 bits (82), Expect = 0.002
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
FQC++CG ++S S +L +H + H
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 4e-13
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGEKP+KC C K+F KS LR H + H+ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 48.3 bits (116), Expect = 4e-08
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP+KC C K+F KS LR H + H+ +
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C KSF+ L+ H + HTGE+
Sbjct: 14 KCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C CGK+F KS L H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 32.9 bits (76), Expect = 0.011
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C DCGK ++ S L H++ H
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCH 35
Score = 32.9 bits (76), Expect = 0.011
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C DCGK ++ S L H++ H
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C KSF+ L+ H + HTG
Sbjct: 14 KCSDCGKSFTWKSRLRIHQKCHTG 37
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 62.2 bits (152), Expect = 5e-13
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCG 266
+ +GEKPFKC+ C K F S +H ++HS KP G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 47.9 bits (115), Expect = 6e-08
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCG 330
EKPFKC+ C K F S +H ++HS KP G
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K F H R+H+GEKP
Sbjct: 14 KCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 39.1 bits (92), Expect = 8e-05
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + S KPF CE+CGK F S Y H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C +CGK + T+S H++ H
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSH 35
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C +CGK + T+S H++ H
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSH 35
Score = 30.2 bits (69), Expect = 0.096
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K F H R+H+G
Sbjct: 14 KCEECGKGFYTNSQCYSHQRSHSG 37
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 6e-13
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKPF+C C KAF KSNL H +TH+ KP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKPF+C C KAF KSNL H +TH+ KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 4e-07
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K+F+ L H RTHTGEKP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 6e-05
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KPF C +C KAF KS L H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C +C K ++T SNL H++ H
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTH 35
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C +C K ++T SNL H++ H
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTH 35
Score = 31.3 bits (72), Expect = 0.045
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K+F+ L H RTHTG
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTG 37
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 6e-13
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ + EKP+KC+ C K + + NL H + H K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 47.9 bits (115), Expect = 6e-08
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP+KC+ C K + + NL H + H K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 43.6 bits (104), Expect = 2e-06
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K ++R L H R H GEK
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 249 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
+ + S KP+ CE CGK + + L H+ EK
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQ--------RVHMGEKTSGP 43
Score = 39.4 bits (93), Expect = 7e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + S KP+ CE CGK + + L H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C DCGK Y+ NL H+++H
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C DCGK Y+ NL H+++H
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVH 35
Score = 29.8 bits (68), Expect = 0.15
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C K ++R L H R H G
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMG 37
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 62.1 bits (152), Expect = 6e-13
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGEKP++C C KAF KSNL H +TH+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 46.7 bits (112), Expect = 1e-07
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP++C C KAF KSNL H +TH+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 44.8 bits (107), Expect = 6e-07
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K+F+ L H RTHTGE
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C +C KAF KS L H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 32.8 bits (76), Expect = 0.012
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +C K ++T SNL H++ H
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTH 35
Score = 32.8 bits (76), Expect = 0.012
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +C K ++T SNL H++ H
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTH 35
Score = 30.9 bits (71), Expect = 0.061
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C K+F+ L H RTHTG
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTG 37
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 6e-13
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP++CKVC KAF K++L H +TH+ KP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 47.1 bits (113), Expect = 9e-08
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP++CKVC KAF K++L H +TH+ KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
+ + +C CSK+F++ L H +THTGEKP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 3e-04
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C+ C KAF K++L +H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 33.3 bits (77), Expect = 0.010
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C+ C K ++ ++LA+H++ H
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTH 35
Score = 33.3 bits (77), Expect = 0.010
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C+ C K ++ ++LA+H++ H
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTH 35
Score = 32.1 bits (74), Expect = 0.021
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C CSK+F++ L H +THTG
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTG 37
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 61.8 bits (151), Expect = 6e-13
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ GEK +KC+ CD F+ S+LR H H KP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 48.7 bits (117), Expect = 3e-08
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EK +KC+ CD F+ S+LR H H KP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C FS+ L+ H H GEKP
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 249 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
+ + K + C +C F+ S L H+ + EKP
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQ--------NVHVGEKPSGP 43
Score = 36.4 bits (85), Expect = 6e-04
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + K + C +C F+ S L H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 32.9 bits (76), Expect = 0.014
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++CR+C +S +S+L H+ +H
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVH 35
Score = 32.9 bits (76), Expect = 0.014
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++CR+C +S +S+L H+ +H
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVH 35
Score = 30.2 bits (69), Expect = 0.11
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C FS+ L+ H H G
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVG 37
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 61.7 bits (151), Expect = 7e-13
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TG KP+ C C KAF KS L H +TH+
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 46.3 bits (111), Expect = 2e-07
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
KP+ C C KAF KS L H +TH+
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K+F L H RTHTGE
Sbjct: 14 VCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 40.9 bits (97), Expect = 2e-05
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ + + +KP+VC +CGKAF KSYL H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHT 32
Score = 31.7 bits (73), Expect = 0.034
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C +CGK + + S L H + H
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTH 35
Score = 31.7 bits (73), Expect = 0.034
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C +CGK + + S L H + H
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTH 35
Score = 31.3 bits (72), Expect = 0.037
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C K+F L H RTHTG
Sbjct: 14 VCNECGKAFRSKSYLIIHTRTHTG 37
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 8e-13
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGE+P+ C VC KAF D+SNL H + H+ KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 9e-08
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
E+P+ C VC KAF D+SNL H + H+ KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 5e-06
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K+F+ L H + HTGEKP
Sbjct: 14 ICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + +P++C CGKAF +S L KH
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C CGK ++ SNL +H++IH
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIH 35
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C CGK ++ SNL +H++IH
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIH 35
Score = 29.0 bits (66), Expect = 0.30
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C K+F+ L H + HTG
Sbjct: 14 ICTVCGKAFTDRSNLIKHQKIHTG 37
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 8e-13
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP++C C KAF D+SNL H + H+ KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 7e-08
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP++C C KAF D+SNL H + H+ KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K+F+ L H + HTGEKP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C +CGKAF +S L+ H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ SNL H++IH
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ SNL H++IH
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIH 35
Score = 29.0 bits (66), Expect = 0.27
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K+F+ L H + HTG
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG 37
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 8e-13
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGEKP+KC C KAF +S+L H THS KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 9e-08
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP+KC C KAF +S+L H THS KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K+F L H TH+GEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 7e-04
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ + KP+ C +CGKAF +S L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQ 32
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK + S+LA H+ H
Sbjct: 13 YKCNECGKAFRARSSLAIHQATH 35
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK + S+LA H+ H
Sbjct: 13 YKCNECGKAFRARSSLAIHQATH 35
Score = 31.7 bits (73), Expect = 0.031
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K+F L H TH+G
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG 37
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 8e-13
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKPFKC +C K+F +S L H H+ KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKPFKC +C K+F +S L H H+ KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 43.6 bits (104), Expect = 2e-06
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C KSF L H HT EKP
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 38.2 bits (90), Expect = 1e-04
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ + + KPF C+ CGK+F +S L +H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHS 32
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C CGK + S L RH +H
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVH 35
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C CGK + S L RH +H
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVH 35
Score = 29.8 bits (68), Expect = 0.18
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C KSF L H HT
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTA 37
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 61.4 bits (150), Expect = 9e-13
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ G P+KC C+K+F+ K L H + H++ KP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 48.3 bits (116), Expect = 4e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
P+KC C+K+F+ K L H + H++ KP
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C KSFS L H R HT EKP
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 38.7 bits (91), Expect = 1e-04
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 249 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
+ + + V P+ C +C K+F+ K L H+ + EKP
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQ--------RMHTREKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ + + V P+ C +C K+F+ K L H+
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQ 32
Score = 31.4 bits (72), Expect = 0.047
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C C K +S L H+++H
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMH 35
Score = 31.4 bits (72), Expect = 0.047
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C C K +S L H+++H
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMH 35
Score = 30.2 bits (69), Expect = 0.12
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C KSFS L H R HT
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTR 37
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 1e-12
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ GEKP+ C C KAF+ KS L H++THS KP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + C C K+FS L H+RTH+GEKP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+ C C KAF+ KS L H++THS KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ + + KP+ C +CGKAF+ KSYL H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHM 32
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + C C K+FS L H+RTH+G
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 32.9 bits (76), Expect = 0.013
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C +CGK +S+ S L H + H
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTH 35
Score = 32.9 bits (76), Expect = 0.013
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C +CGK +S+ S L H + H
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 1e-12
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGEKP++C VC KAF+ ++L H + HS KP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 46.3 bits (111), Expect = 2e-07
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP++C VC KAF+ ++L H + HS KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K+FS L H R H+GEKP
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KP+ C+ C KAF+ + L +H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 32.1 bits (74), Expect = 0.020
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C C K +S ++L +H+++H
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVH 35
Score = 32.1 bits (74), Expect = 0.020
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C C K +S ++L +H+++H
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVH 35
Score = 29.4 bits (67), Expect = 0.22
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+FS L H R H+G
Sbjct: 14 ECDVCRKAFSHHASLTQHQRVHSG 37
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 1e-12
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ +GEKP+ C C K F+ KS L AH +TH+ KP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 46.0 bits (110), Expect = 3e-07
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+ C C K F+ KS L AH +TH+ KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 9e-07
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + + C C K+FS+ +L H RTHTGEKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 1e-04
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + S KP+ C +CGK F+ KS L H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 32.5 bits (75), Expect = 0.014
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C +CGK +S S L+ H++ H
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTH 35
Score = 32.5 bits (75), Expect = 0.014
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C +CGK +S S L+ H++ H
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTH 35
Score = 30.6 bits (70), Expect = 0.074
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + + C C K+FS+ +L H RTHTG
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTG 37
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 1e-12
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ +GEKPFKC+ C K F S L +H + H+ KP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 46.7 bits (112), Expect = 1e-07
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKPFKC+ C K F S L +H + H+ KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K F++ L H R HTGEKP
Sbjct: 14 KCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 4e-04
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ S KPF CE+CGK F S L+ H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C +CGK ++ +S L H+++H
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C +CGK ++ +S L H+++H
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVH 35
Score = 29.4 bits (67), Expect = 0.20
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K F++ L H R HTG
Sbjct: 14 KCEECGKRFTQNSQLHSHQRVHTG 37
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 61.0 bits (149), Expect = 2e-12
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TG KP+ C C K F+ KS L H ++H+ VKP
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
KP+ C C K F+ KS L H ++H+ VKP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C+K+FS L H R+HTG KP
Sbjct: 14 GCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 39.4 bits (93), Expect = 6e-05
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + VKP+ C +C K F+LKS L H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 33.3 bits (77), Expect = 0.008
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C C K +S S L H++ H
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSH 35
Score = 33.3 bits (77), Expect = 0.008
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C C K +S S L H++ H
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSH 35
Score = 30.6 bits (70), Expect = 0.072
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C+K+FS L H R+HTG
Sbjct: 14 GCSQCAKTFSLKSQLIVHQRSHTG 37
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 2e-12
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGEKP+KC C KAF SNL H H+ KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
Score = 46.7 bits (112), Expect = 2e-07
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP+KC C KAF SNL H H+ KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K+F L H HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C +CGKAF S L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 33.6 bits (78), Expect = 0.006
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK + SNL H+ IH
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIH 35
Score = 33.6 bits (78), Expect = 0.006
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK + SNL H+ IH
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIH 35
Score = 29.4 bits (67), Expect = 0.23
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K+F L H HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG 37
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-12
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGE PF C C K F K+NL H + H+ +P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 46.3 bits (111), Expect = 2e-07
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
E PF C C K F K+NL H + H+ +P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ C C K F+ L H + HTGE+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + PF+C +CGK F K+ L H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F C +CGK ++ +NL H++IH
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F C +CGK ++ +NL H++IH
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ C C K F+ L H + HTG
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTG 37
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 60.6 bits (148), Expect = 2e-12
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP+KC+ C K F + +L H H+ KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+KC+ C K F + +L H H+ KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K F L H HTGEKP
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ CE+CGK F + LY H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 33.3 bits (77), Expect = 0.010
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK + +L H +H
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVH 35
Score = 33.3 bits (77), Expect = 0.010
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK + +L H +H
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVH 35
Score = 29.4 bits (67), Expect = 0.18
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C K F L H HTG
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTG 37
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.7 bits (148), Expect = 2e-12
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGEKP KC C KAF KS L H +TH K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 47.2 bits (113), Expect = 9e-08
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP KC C KAF KS L H +TH K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + C+C C K+F L H RTH +K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 249 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
+ + + KP C +CGKAF KS L H+ + +K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQ--------RTHVDDKHSGP 43
Score = 39.5 bits (93), Expect = 5e-05
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP C +CGKAF KS L H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 33.7 bits (78), Expect = 0.007
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+C +CGK + S L H++ H
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTH 35
Score = 33.7 bits (78), Expect = 0.007
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+C +CGK + S L H++ H
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTH 35
Score = 30.6 bits (70), Expect = 0.088
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + C+C C K+F L H RTH
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVD 37
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-12
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGEKP+KC+ C K + K NL H + H+ +P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
Score = 46.4 bits (111), Expect = 2e-07
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP+KC+ C K + K NL H + H+ +P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
Score = 42.9 bits (102), Expect = 3e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K ++ + L H + HTGE+P
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ CEKCGK + K L H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C CGK Y++ NL H+++H
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVH 35
Score = 34.8 bits (81), Expect = 0.003
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C CGK Y++ NL H+++H
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVH 35
Score = 29.0 bits (66), Expect = 0.31
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C K ++ + L H + HTG
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTG 37
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.6 bits (148), Expect = 2e-12
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TG K F+C C KAF KS L H + H+ KP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
K F+C C KAF KS L H + H+ KP
Sbjct: 10 GKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K+F+R L H + HTGEKP
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + K F C +CGKAF KS L H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 33.6 bits (78), Expect = 0.006
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C +CGK ++ S L+ H++IH
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIH 35
Score = 33.6 bits (78), Expect = 0.006
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C +CGK ++ S L+ H++IH
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIH 35
Score = 29.0 bits (66), Expect = 0.30
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+F+R L H + HTG
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTG 37
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 60.3 bits (147), Expect = 2e-12
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 221 GHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 260
G + GEKP++C C KAF+ K +L HI+ H+ P
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 324
EKP++C C KAF+ K +L HI+ H+ P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPF 232
+ + +C C K+FS+ L HIR HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 38.7 bits (91), Expect = 1e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ KP+ C++CGKAF+ K L H
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
Score = 32.5 bits (75), Expect = 0.013
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C CGK +S +L H ++H
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVH 34
Score = 32.5 bits (75), Expect = 0.013
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C CGK +S +L H ++H
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVH 34
Score = 32.2 bits (74), Expect = 0.023
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K+FS+ L HIR HTG
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 61.2 bits (149), Expect = 2e-12
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 191 PAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKV--CDKAFADK 244
S ++ IC P C K++ + L+ H RTHTGEKPF C C++ FA
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 245 SNLRAHIQTH 254
L H +TH
Sbjct: 63 DELSRHRRTH 72
Score = 56.2 bits (136), Expect = 1e-10
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 219 LQGHIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSY 274
G + + C C K + S+L+AH +TH+ KPF C + C + FA
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 275 LYKH 278
L +H
Sbjct: 65 LSRH 68
Score = 47.8 bits (114), Expect = 1e-07
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 289 SSSSEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVC--EKCGKAFALKSYLYKH 342
SS + C C K + S+L+AH +TH+ KPF C + C + FA L +H
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 39.7 bits (93), Expect = 9e-05
Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 389 HRSPDDTKARTC--PQCGKLYVSMPAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGH 442
++ C P CGK Y H RTH C C + F+R L H
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Query: 443 IRTH 446
RTH
Sbjct: 69 RRTH 72
Score = 34.3 bits (79), Expect = 0.007
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 411 PAYSMHLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTG 448
S ++ IC P C K++ + L+ H RTHTG
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTG 44
Score = 32.7 bits (75), Expect = 0.023
Identities = 20/80 (25%), Positives = 23/80 (28%), Gaps = 35/80 (43%)
Query: 151 DCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQ----ICQC 206
CGK Y SS+L H RTH C
Sbjct: 24 GCGKTYFKSSHLKA-------------------------------HTRTHTGEKPFSCSW 52
Query: 207 PHCSKSFSRPWLLQGHIRTH 226
C + F+R L H RTH
Sbjct: 53 KGCERRFARSDELSRHRRTH 72
Score = 28.1 bits (63), Expect = 1.3
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 147 FQCR--DCGKHYSTSSNLARHRQIH 169
F C C + ++ S L+RHR+ H
Sbjct: 48 FSCSWKGCERRFARSDELSRHRRTH 72
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP++C VC KAF+ + +L H + HS KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP++C VC KAF+ + +L H + HS KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K+FS L H R H+G+KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 35.9 bits (84), Expect = 9e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KP+ C CGKAF+ + L H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C CGK +S +L+ H++IH
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIH 35
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C CGK +S +L+ H++IH
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIH 35
Score = 30.2 bits (69), Expect = 0.12
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K+FS L H R H+G
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG 37
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 60.2 bits (147), Expect = 2e-12
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ +GEKP++C C KAF KS L H +TH+ V
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP++C C KAF KS L H +TH+ V
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K+F LL H RTH G
Sbjct: 14 ECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ + S KP+ C +CGKAF KS L HE
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHE 32
Score = 31.7 bits (73), Expect = 0.026
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK + S L H + H
Sbjct: 13 YECNECGKAFIWKSLLIVHERTH 35
Score = 31.7 bits (73), Expect = 0.026
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK + S L H + H
Sbjct: 13 YECNECGKAFIWKSLLIVHERTH 35
Score = 31.0 bits (71), Expect = 0.064
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+F LL H RTH G
Sbjct: 14 ECNECGKAFIWKSLLIVHERTHAG 37
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 2e-12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGEKP++C C KAF+ +S+L H H+ KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP++C C KAF+ +S+L H H+ KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
+C C K+FS L H HTG+KP
Sbjct: 14 ECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 36.4 bits (85), Expect = 7e-04
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ + KP+ C +CGKAF+++S L H+
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQ 32
Score = 32.1 bits (74), Expect = 0.020
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C CGK +S S+L H+ IH
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIH 35
Score = 32.1 bits (74), Expect = 0.020
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C CGK +S S+L H+ IH
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIH 35
Score = 29.0 bits (66), Expect = 0.29
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+FS L H HTG
Sbjct: 14 ECNQCGKAFSVRSSLTTHQAIHTG 37
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 60.2 bits (147), Expect = 3e-12
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ +GEKP+KC C K + + +L H + H+ K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
Score = 46.0 bits (110), Expect = 3e-07
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP+KC C K + + +L H + H+ K
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K + R L H R HTGEK
Sbjct: 14 KCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + S KP+ C +CGK + + L H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK Y +L H+++H
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVH 35
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK Y +L H+++H
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVH 35
Score = 31.0 bits (71), Expect = 0.065
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K + R L H R HTG
Sbjct: 14 KCVECGKGYKRRLDLDFHQRVHTG 37
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 60.2 bits (147), Expect = 3e-12
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGEKPFKC C K F+ +S L H + H+ KP
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKPFKC C K F+ +S L H + H+ KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 9e-07
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K FSR L H + HTGEKP
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KPF C +CGK F+ +S L H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 33.3 bits (77), Expect = 0.009
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C +CGK +S S L H ++H
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLH 35
Score = 33.3 bits (77), Expect = 0.009
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C +CGK +S S L H ++H
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLH 35
Score = 30.6 bits (70), Expect = 0.088
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K FSR L H + HTG
Sbjct: 14 KCVECGKGFSRRSALNVHHKLHTG 37
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.9 bits (146), Expect = 3e-12
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGEKP+KC C KAF D S+ H + H+ +P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 45.6 bits (109), Expect = 4e-07
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP+KC C KAF D S+ H + H+ +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 41.8 bits (99), Expect = 8e-06
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K+F H R HTG++P
Sbjct: 14 KCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 37.2 bits (87), Expect = 3e-04
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ + + KP+ C +CGKAF S +H+
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQ 32
Score = 32.9 bits (76), Expect = 0.011
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK + +S+ +H+++H
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLH 35
Score = 32.9 bits (76), Expect = 0.011
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK + +S+ +H+++H
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLH 35
Score = 28.3 bits (64), Expect = 0.50
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+F H R HTG
Sbjct: 14 KCMECGKAFGDNSSCTQHQRLHTG 37
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 59.9 bits (146), Expect = 3e-12
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TG+KPF+C C K+F K NL H + H+ K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
+KPF+C C K+F K NL H + H+ K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 44.8 bits (107), Expect = 6e-07
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C HC KSF L H R HTGEK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KPF C CGK+F K L H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 34.1 bits (79), Expect = 0.004
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C CGK + NL H++IH
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIH 35
Score = 34.1 bits (79), Expect = 0.004
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C CGK + NL H++IH
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIH 35
Score = 31.0 bits (71), Expect = 0.052
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C HC KSF L H R HTG
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG 37
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 3e-12
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TG KP+ C C KAF+ S+L H H+ KP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
KP+ C C KAF+ S+L H H+ KP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 41.7 bits (99), Expect = 8e-06
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K+FS L H HTGEKP
Sbjct: 14 MCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + VKP++C +CGKAF++ S L H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 34.0 bits (79), Expect = 0.005
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C +CGK +S S+L H+ IH
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C +CGK +S S+L H+ IH
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIH 35
Score = 27.9 bits (63), Expect = 0.67
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C K+FS L H HTG
Sbjct: 14 MCNECGKAFSVYSSLTTHQVIHTG 37
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 3e-12
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGE+ ++C C KAF KS L H + H KP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 45.6 bits (109), Expect = 4e-07
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
E+ ++C C KAF KS L H + H KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 5e-06
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K+F + L H R H GEKP
Sbjct: 14 ECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + + C +CGKAF KS L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 32.5 bits (75), Expect = 0.016
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK + S L+ H++IH
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIH 35
Score = 32.5 bits (75), Expect = 0.016
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK + S L+ H++IH
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIH 35
Score = 29.0 bits (66), Expect = 0.29
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+F + L H R H G
Sbjct: 14 ECSECGKAFIQKSTLSMHQRIHRG 37
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 4e-12
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP+ C C K+F KS+L H + H+ KP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 5e-07
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+ C C K+F KS+L H + H+ KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C KSF + L H R HTGEKP
Sbjct: 14 ICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP++C +CGK+F KS+L +H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 33.3 bits (77), Expect = 0.009
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C +CGK + S+L RHR+IH
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIH 35
Score = 33.3 bits (77), Expect = 0.009
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C +CGK + S+L RHR+IH
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIH 35
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C KSF + L H R HTG
Sbjct: 14 ICNECGKSFIQKSHLNRHRRIHTG 37
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 4e-12
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKPF C C KAF+D L H + H+ KP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 5e-07
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKPF C C KAF+D L H + H+ KP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K+FS L H R HTGEKP
Sbjct: 14 DCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ + + KPF C CGKAF+ L +H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHR 32
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F C DCGK +S L +HR+IH
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIH 35
Score = 34.8 bits (81), Expect = 0.003
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F C DCGK +S L +HR+IH
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C K+FS L H R HTG
Sbjct: 14 DCIDCGKAFSDHIGLNQHRRIHTG 37
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 59.4 bits (145), Expect = 4e-12
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKPF+C C K+F+ S L H + H+ KP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKPF+C C K+F+ S L H + H+ KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 43.6 bits (104), Expect = 2e-06
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C KSFS L H R HTGEKP
Sbjct: 14 ECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KPF C +CGK+F++ S L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C +CGK +S SS LA H++IH
Sbjct: 13 FECAECGKSFSISSQLATHQRIH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C +CGK +S SS LA H++IH
Sbjct: 13 FECAECGKSFSISSQLATHQRIH 35
Score = 30.2 bits (69), Expect = 0.12
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C KSFS L H R HTG
Sbjct: 14 ECAECGKSFSISSQLATHQRIHTG 37
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 4e-12
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ +G+KP++CK C K F +L H + H+ +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 46.4 bits (111), Expect = 2e-07
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
+KP++CK C K F +L H + H+ +
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 44.1 bits (105), Expect = 1e-06
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
+C C K+F + L H R HTGE+
Sbjct: 14 ECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 39.8 bits (94), Expect = 4e-05
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 249 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCK 299
+ + S KP+ C++C K F +L +H+ + E+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHK--------RVHTGERSSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + S KP+ C++C K F +L +H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 32.9 bits (76), Expect = 0.010
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C++C K + +L +H+++H
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVH 35
Score = 32.9 bits (76), Expect = 0.010
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C++C K + +L +H+++H
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVH 35
Score = 29.8 bits (68), Expect = 0.17
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+F + L H R HTG
Sbjct: 14 ECKECRKTFIQIGHLNQHKRVHTG 37
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 5e-12
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP+ C C KAF +SNL H + H+K KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 45.2 bits (108), Expect = 4e-07
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+ C C KAF +SNL H + H+K KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + C C K+F+ L H + HT +KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 39.0 bits (92), Expect = 9e-05
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP++C +CGKAF ++S L KH
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C +CGK ++ SNL +H++IH
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C +CGK ++ SNL +H++IH
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIH 35
Score = 29.4 bits (67), Expect = 0.21
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + C C K+F+ L H + HT
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTK 37
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 59.6 bits (145), Expect = 5e-12
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 222 HIRTHTGEKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKPF C C F+ L H ++HS VKP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 51.1 bits (123), Expect = 5e-09
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 196 HLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ C P C FSR L H R+H+G KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 43.1 bits (102), Expect = 3e-06
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKPF C C F+ L H ++HS VKP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 37.7 bits (88), Expect = 2e-04
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 416 HLRTHNQ----ICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ C P C FSR L H R+H+G
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSG 39
Score = 36.5 bits (85), Expect = 6e-04
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 249 AHIQTHSKVKPFVC--EKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
+ + + KPF C CG F+ L +H S S KP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRH--------RRSHSGVKPSGP 45
Score = 33.0 bits (76), Expect = 0.012
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 313 AHIQTHSKVKPFVC--EKCGKAFALKSYLYKH 342
+ + + KPF C CG F+ L +H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRH 33
Score = 30.0 bits (68), Expect = 0.13
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 147 FQC--RDCGKHYSTSSNLARHRQIH 169
F C CG +S S L+RHR+ H
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSH 37
Score = 30.0 bits (68), Expect = 0.13
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 367 FQC--RDCGKHYSTSSNLARHRQIH 389
F C CG +S S L+RHR+ H
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSH 37
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 5e-12
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP+ C+ C KAF S L+ H + H+ KP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+ C+ C KAF S L+ H + H+ KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K+F LQ H R HTGEKP
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ CE+CGKAF S L +H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 33.3 bits (77), Expect = 0.008
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C +CGK + S L H++IH
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIH 35
Score = 33.3 bits (77), Expect = 0.008
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C +CGK + S L H++IH
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIH 35
Score = 29.0 bits (66), Expect = 0.25
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C K+F LQ H R HTG
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTG 37
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.4 bits (145), Expect = 5e-12
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ +GEKP+KC C KAF ++L H + H+ +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 44.8 bits (107), Expect = 6e-07
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP+KC C KAF ++L H + H+ +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K+F R L H R HTG +P
Sbjct: 14 KCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ S KP+ C +CGKAF ++L +H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK + ++L HR+IH
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK + ++L HR+IH
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIH 35
Score = 29.0 bits (66), Expect = 0.30
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+F R L H R HTG
Sbjct: 14 KCSECGKAFHRHTHLNEHRRIHTG 37
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.5 bits (145), Expect = 5e-12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGEKP++C +C K+F KS L H Q H+ KP
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 6e-07
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP++C +C K+F KS L H Q H+ KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
+ + +C C KSF++ L H + HTGEKP
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KP+ C CGK+F KS L+ H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 33.3 bits (77), Expect = 0.010
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C CGK ++ S L H+QIH
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIH 35
Score = 33.3 bits (77), Expect = 0.010
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C CGK ++ S L H+QIH
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIH 35
Score = 30.6 bits (70), Expect = 0.078
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C KSF++ L H + HTG
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG 37
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 59.5 bits (145), Expect = 5e-12
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGEK +KC C K F+ S L H + H+ KP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 45.2 bits (108), Expect = 5e-07
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EK +KC C K F+ S L H + H+ KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 196 HLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K FSR L H + HTGEKP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + K + C +CGK F+ S L +H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 33.6 bits (78), Expect = 0.007
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK +S +S L++H++IH
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIH 35
Score = 33.6 bits (78), Expect = 0.007
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK +S +S L++H++IH
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIH 35
Score = 29.0 bits (66), Expect = 0.26
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 416 HLRTH--NQICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K FSR L H + HTG
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG 37
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 6e-12
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGEKP+KC C K F S+L H H+ KP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 45.2 bits (108), Expect = 5e-07
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP+KC C K F S+L H H+ KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K F R L H HTGEKP
Sbjct: 14 KCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 0.001
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C +CGK F S+L +H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK + +S+LARH+ IH
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIH 35
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK + +S+LARH+ IH
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIH 35
Score = 28.2 bits (64), Expect = 0.50
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K F R L H HTG
Sbjct: 14 KCHECGKVFRRNSHLARHQLIHTG 37
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 6e-12
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGEKP+KC VC K+F S+L H + H+ KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 6e-07
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP+KC VC K+F S+L H + H+ KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C KSF L H R HTGEKP
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 7e-04
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C+ C K+F S L H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C C K + S+L H++IH
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIH 35
Score = 33.3 bits (77), Expect = 0.009
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C C K + S+L H++IH
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIH 35
Score = 28.6 bits (65), Expect = 0.43
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C KSF L H R HTG
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTG 37
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 7e-12
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGE P++C C KAF+ K L +H +TH+ KP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 45.2 bits (108), Expect = 6e-07
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K+FSR + L H RTH GEKP
Sbjct: 14 ECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
E P++C C KAF+ K L +H +TH+ KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + P+ C +CGKAF+ K L H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 33.3 bits (77), Expect = 0.010
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK +S L H++ H
Sbjct: 13 YECHECGKAFSRKYQLISHQRTH 35
Score = 33.3 bits (77), Expect = 0.010
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK +S L H++ H
Sbjct: 13 YECHECGKAFSRKYQLISHQRTH 35
Score = 31.3 bits (72), Expect = 0.039
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+FSR + L H RTH G
Sbjct: 14 ECHECGKAFSRKYQLISHQRTHAG 37
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 7e-12
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 221 GHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ G+K FKC C K F S+L H + H+ KP
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 9e-07
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
+K FKC C K F S+L H + H+ KP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ ++ +C C K+F++ L H R HTGEKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + K F C +C K F S L H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C +C K ++ SS+L H++IH
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIH 35
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C +C K ++ SS+L H++IH
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIH 35
Score = 28.2 bits (64), Expect = 0.49
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ ++ +C C K+F++ L H R HTG
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTG 37
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.0 bits (144), Expect = 7e-12
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ +GEKPFKCK C KAF +L +H++ H+ KP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 6e-07
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKPFKCK C KAF +L +H++ H+ KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 44.4 bits (106), Expect = 9e-07
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + + +C C K+F + L H+R HTGEKP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 6e-04
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + S KPF C++CGKAF +L H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 34.0 bits (79), Expect = 0.005
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C++CGK + + +LA H +IH
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C++CGK + + +LA H +IH
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIH 35
Score = 30.2 bits (69), Expect = 0.097
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + + +C C K+F + L H+R HTG
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTG 37
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 8e-12
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGEKPFKC C K++ + +L H + H+ KP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 44.8 bits (107), Expect = 7e-07
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKPFKC C K++ + +L H + H+ KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C KS+++ L H R HTGEKP
Sbjct: 14 KCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KPF C +CGK++ + +L +H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C +CGK Y+ +L +H+++H
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C +CGK Y+ +L +H+++H
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVH 35
Score = 29.4 bits (67), Expect = 0.24
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C KS+++ L H R HTG
Sbjct: 14 KCGECGKSYNQRVHLTQHQRVHTG 37
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 8e-12
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ GEK +KC VC K F+ S+L+ H + H+ KP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 4e-07
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K FS+ LQ H R HTGEKP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 7e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EK +KC VC K F+ S+L+ H + H+ KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ K + C+ CGK F+ S+L H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 33.7 bits (78), Expect = 0.006
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C CGK +S SS+L H+++H
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVH 35
Score = 33.7 bits (78), Expect = 0.006
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C CGK +S SS+L H+++H
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVH 35
Score = 31.0 bits (71), Expect = 0.050
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K FS+ LQ H R HTG
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG 37
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 9e-12
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGEKP +C+ C K+F+ S L H + H+ P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP +C+ C K+F+ S L H + H+ P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C KSFS L H R HTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KP C +CGK+F+ S L H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 33.3 bits (77), Expect = 0.009
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+CR+CGK +S +S L H++IH
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIH 35
Score = 33.3 bits (77), Expect = 0.009
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+CR+CGK +S +S L H++IH
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIH 35
Score = 30.6 bits (70), Expect = 0.092
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C KSFS L H R HTG
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG 37
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 9e-12
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ +GE+PFKC C K F +S+L H++ HS+ K
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
E+PFKC C K F +S+L H++ HS+ K
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K F R L GH+R H+ EK
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 39.4 bits (93), Expect = 6e-05
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 250 HIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
+ S +PF C +CGK F +S+L H S EK
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHL--------RLHSREKSSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ S +PF C +CGK F +S+L H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C +CGK + S+LA H ++H
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLH 35
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C +CGK + S+LA H ++H
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLH 35
Score = 29.4 bits (67), Expect = 0.23
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C K F R L GH+R H+
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSR 37
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 9e-12
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TG++P++C C KAF KS+L H ++H+ KP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 5e-07
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
+ + +C C K+F L H R+HTGEKP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
++P++C C KAF KS+L H ++H+ KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + +P+ C +CGKAF KS L H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK + T S+L HR+ H
Sbjct: 13 YECIECGKAFKTKSSLICHRRSH 35
Score = 34.4 bits (80), Expect = 0.004
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK + T S+L HR+ H
Sbjct: 13 YECIECGKAFKTKSSLICHRRSH 35
Score = 31.0 bits (71), Expect = 0.053
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K+F L H R+HTG
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTG 37
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-11
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGEKP++C C K+F KS L H + H+ P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 44.5 bits (106), Expect = 1e-06
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP++C C K+F KS L H + H+ P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C KSF + L H R HTGE P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 36.8 bits (86), Expect = 5e-04
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C CGK+F KS L+ H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C DCGK + S L H++IH
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIH 35
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C DCGK + S L H++IH
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIH 35
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C KSF + L H R HTG
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTG 37
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-11
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP+KC C K F S+L H + H+ VKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 44.8 bits (107), Expect = 8e-07
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+KC C K F S+L H + H+ VKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K F++ L H R HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C +CGK F S+L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 33.6 bits (78), Expect = 0.007
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +S+LA H++IH
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIH 35
Score = 33.6 bits (78), Expect = 0.007
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +S+LA H++IH
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIH 35
Score = 29.4 bits (67), Expect = 0.21
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K F++ L H R HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTG 37
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGEKP+KC C K F S L H + H+ KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 44.4 bits (106), Expect = 9e-07
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
EKP+KC C K F S L H + H+ KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K F L H R HTGEKP
Sbjct: 14 KCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KP+ C +CGK F SYL +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK + +S L+RH++IH
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK + +S L+RH++IH
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIH 35
Score = 28.2 bits (64), Expect = 0.50
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K F L H R HTG
Sbjct: 14 KCNECGKVFRHNSYLSRHQRIHTG 37
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 59.0 bits (142), Expect = 1e-11
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
C C +P +L+ HIRTHT +P+ C C+ +F K NL H+++ + K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 47.8 bits (113), Expect = 9e-08
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 260 FVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHS 319
++CE+CG S L KH + + +P+ C C+ +F K NL H+++ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTH--------TDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Query: 320 KVK 322
K
Sbjct: 54 HSK 56
Score = 47.4 bits (112), Expect = 1e-07
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 232 FKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+ C+ C S L+ HI+TH+ V+P+ C C +F K L KH
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 47.4 bits (112), Expect = 1e-07
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 296 FKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ C+ C S L+ HI+TH+ V+P+ C C +F K L KH
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 43.6 bits (102), Expect = 3e-06
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 179 TCPQCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEK 230
C +CG H+RTH + C +C+ SF L H+++ K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 38.5 bits (89), Expect = 1e-04
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 399 TCPQCGKLYVSMPAYSMHLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
C +CG H+RTH + C +C+ SF L H+++
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 35.8 bits (82), Expect = 0.001
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH 420
+ C +CG S L +H + H D + C C + + + H+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTH---TDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 25.4 bits (55), Expect = 6.6
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C C + T NL +H +
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSK 52
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGEKP++C C KAFA K+NL H + H+ KP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP++C C KAFA K+NL H + H+ KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K+F++ L H R HTGEKP
Sbjct: 14 RCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 8e-04
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C +CGKAFA K+ L +H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +NL +H++IH
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +NL +H++IH
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIH 35
Score = 28.6 bits (65), Expect = 0.43
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+F++ L H R HTG
Sbjct: 14 RCGECGKAFAQKANLTQHQRIHTG 37
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP+KC C KAF+ S L H + H+ KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 44.0 bits (105), Expect = 1e-06
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+KC C KAF+ S L H + H+ KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K+FS+ L H R HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KP+ C +CGKAF+ S L +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK +S +S LARH++IH
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK +S +S LARH++IH
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIH 35
Score = 29.8 bits (68), Expect = 0.15
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K+FS+ L H R HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTG 37
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-11
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP+ C VC KAF ++L H++ H++
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+ C VC KAF ++L H++ H++
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 42.5 bits (101), Expect = 5e-06
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
C C K+F L H+R HT E
Sbjct: 14 SCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KP+ C CGKAF L ++L +H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
Score = 34.0 bits (79), Expect = 0.005
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C CGK + S++L +H ++H
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C CGK + S++L +H ++H
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVH 35
Score = 28.6 bits (65), Expect = 0.40
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C K+F L H+R HT
Sbjct: 14 SCNVCGKAFVLSAHLNQHLRVHTQ 37
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 58.4 bits (142), Expect = 1e-11
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP+ CK C K+F S L H + HS KP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 44.5 bits (106), Expect = 1e-06
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCK 235
C C KSF L H R H+GEKP
Sbjct: 14 NCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 43.7 bits (104), Expect = 1e-06
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+ CK C K+F S L H + HS KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 37.6 bits (88), Expect = 3e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C++CGK+F S L KH
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 33.7 bits (78), Expect = 0.007
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C++CGK + +S L +H+++H
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVH 35
Score = 33.7 bits (78), Expect = 0.007
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C++CGK + +S L +H+++H
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVH 35
Score = 29.5 bits (67), Expect = 0.18
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C KSF L H R H+G
Sbjct: 14 NCKECGKSFRWASCLLKHQRVHSG 37
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP+KC C K F S+L H H+ KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 44.0 bits (105), Expect = 1e-06
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+KC C K F S+L H H+ KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 43.2 bits (103), Expect = 2e-06
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K F++ L H HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 6e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C +CGK F S+L +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +S+L RHR IH
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIH 35
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +S+L RHR IH
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIH 35
Score = 29.4 bits (67), Expect = 0.19
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K F++ L H HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTG 37
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-11
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ +GEKPF+C+ C K F S+L +H + H+ KP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 6e-07
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + + QC C K F++ L H R HTGEKP
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKPF+C+ C K F S+L +H + H+ KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ S KPF CE+CGK F S+L+ H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 33.7 bits (78), Expect = 0.007
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
FQC +CGK ++ +S+L H+++H
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVH 35
Score = 33.7 bits (78), Expect = 0.007
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
FQC +CGK ++ +S+L H+++H
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVH 35
Score = 31.4 bits (72), Expect = 0.047
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + + QC C K F++ L H R HTG
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTG 37
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-11
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGE+ ++C C KAFA KS L H + H+ KP
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
E+ ++C C KAFA KS L H + H+ KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K+F+R L H R HTGEKP
Sbjct: 14 ECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + + C +CGKAFA KS L H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 33.2 bits (77), Expect = 0.008
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ S L H++IH
Sbjct: 13 YECSECGKAFARKSTLIMHQRIH 35
Score = 33.2 bits (77), Expect = 0.008
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ S L H++IH
Sbjct: 13 YECSECGKAFARKSTLIMHQRIH 35
Score = 29.4 bits (67), Expect = 0.20
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+F+R L H R HTG
Sbjct: 14 ECSECGKAFARKSTLIMHQRIHTG 37
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-11
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGEK + CK C K+F+ L H + HS KP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C KSFSR L H R H+GEKP
Sbjct: 14 NCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EK + CK C K+F+ L H + HS KP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ + + K + C++CGK+F+ L KHE
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHE 32
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C++CGK +S + L +H ++H
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C++CGK +S + L +H ++H
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLH 35
Score = 30.6 bits (70), Expect = 0.088
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C KSFSR L H R H+G
Sbjct: 14 NCKECGKSFSRAPCLLKHERLHSG 37
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-11
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
+ TGE+P KC C K+F ++L H + H+ KP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 44.0 bits (105), Expect = 1e-06
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C KSF + L H R HTGEKP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
E+P KC C K+F ++L H + H+ KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 35.9 bits (84), Expect = 0.001
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + +P C +CGK+F ++L +H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 33.6 bits (78), Expect = 0.007
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+C +CGK + S++L +H++IH
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIH 35
Score = 33.6 bits (78), Expect = 0.007
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+C +CGK + S++L +H++IH
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIH 35
Score = 30.2 bits (69), Expect = 0.12
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C KSF + L H R HTG
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTG 37
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-11
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGEKP+KC+VC KAF S+L H HS +P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP+KC+VC KAF S+L H HS +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 41.7 bits (99), Expect = 8e-06
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K+F L H H+GE+P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 36.7 bits (86), Expect = 6e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KP+ C+ CGKAF + S+L +H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C+ CGK + SS+L +H +H
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C+ CGK + SS+L +H +H
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVH 35
Score = 27.9 bits (63), Expect = 0.77
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K+F L H H+G
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG 37
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TG KP++C C KAF+ S L H + H+ KP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
KP++C C KAF+ S L H + H+ KP
Sbjct: 10 GKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 5e-06
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
QC C K+FS+ L H R HTGEKP
Sbjct: 14 QCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 36.4 bits (85), Expect = 7e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C +CGKAF+ S L +H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+QC +CGK +S +S LARH+++H
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVH 35
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+QC +CGK +S +S LARH+++H
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVH 35
Score = 28.7 bits (65), Expect = 0.36
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
QC C K+FS+ L H R HTG
Sbjct: 14 QCNECGKAFSQTSKLARHQRVHTG 37
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ +GE+P+ C C K F S+L H++ H + K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 45.2 bits (108), Expect = 5e-07
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K+F R L H++ H EK
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 44.8 bits (107), Expect = 7e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
E+P+ C C K F S+L H++ H + K
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 250 HIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
+ S +P+ C +CGK F S+L +H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHL--------KRHFREKSSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ S +P+ C +CGK F S+L +H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHL 32
Score = 32.1 bits (74), Expect = 0.024
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C +CGK++ S+L H + H
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRH 35
Score = 32.1 bits (74), Expect = 0.024
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C +CGK++ S+L H + H
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRH 35
Score = 30.9 bits (71), Expect = 0.052
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C K+F R L H++ H
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFR 37
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 2e-11
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP+KC C K F S+L H H+ KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 43.6 bits (104), Expect = 2e-06
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+KC C K F S+L H H+ KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K F++ L H HTGEKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 6e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C +CGK F S+L +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +S+LARHR IH
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +S+LARHR IH
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIH 35
Score = 29.4 bits (67), Expect = 0.23
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K F++ L H HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTG 37
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 57.2 bits (139), Expect = 3e-11
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 224 RTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+GEKPF C C+KAF+ KS L H QTH++ KP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 48.3 bits (116), Expect = 4e-08
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKPF C C+KAF+ KS L H QTH++ KP
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 44.8 bits (107), Expect = 7e-07
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K+FS L H +TH EKP
Sbjct: 12 GCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 39.1 bits (92), Expect = 7e-05
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 253 THSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
S KPF C C KAF+ KSYL H+ + + EKP
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQ--------QTHAEEKPSGP 41
Score = 37.5 bits (88), Expect = 3e-04
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 317 THSKVKPFVCEKCGKAFALKSYLYKH 342
S KPF C C KAF+ KSYL H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 32.5 bits (75), Expect = 0.013
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F C C K +S+ S L H+Q H
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTH 33
Score = 32.5 bits (75), Expect = 0.013
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F C C K +S+ S L H+Q H
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTH 33
Score = 31.0 bits (71), Expect = 0.059
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C K+FS L H +TH
Sbjct: 12 GCSCCEKAFSSKSYLLVHQQTHAE 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 3e-11
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TGEKP+KC C K F S+L H + H+ KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 43.3 bits (103), Expect = 3e-06
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
EKP+KC C K F S+L H + H+ KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K F++ L H R HTG KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C +CGK F S+L +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 33.6 bits (78), Expect = 0.007
Identities = 11/23 (47%), Positives = 20/23 (86%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +S+LARHR++H
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVH 35
Score = 33.6 bits (78), Expect = 0.007
Identities = 11/23 (47%), Positives = 20/23 (86%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +S+LARHR++H
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVH 35
Score = 29.4 bits (67), Expect = 0.20
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K F++ L H R HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTG 37
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 3e-11
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ TG+KP+KC C K F S+L H H+ KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
+KP+KC C K F S+L H H+ KP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K F++ L H HTGEKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 8e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C +CGK F S+L +H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +S+LARHR IH
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIH 35
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +S+LARHR IH
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIH 35
Score = 28.6 bits (65), Expect = 0.35
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K F++ L H HTG
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTG 37
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 4e-11
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ +GEKP+ C C KAF + L H + H+ KP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + + C +C K+F L H R HTGEKP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP+ C C KAF + L H + H+ KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ S KP+VC+ CGKAF L + L +H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C CGK + S+ L RH++IH
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C CGK + S+ L RH++IH
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIH 35
Score = 30.2 bits (69), Expect = 0.12
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + + C +C K+F L H R HTG
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG 37
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.7 bits (138), Expect = 4e-11
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ +GEKP+KC C K F S+L H + H+ KP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + + +C C K F++ L H R HTGEKP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP+KC C K F S+L H + H+ KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 6e-04
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + S KP+ C +CGK F S+L H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 33.6 bits (78), Expect = 0.008
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ +S+L H +IH
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIH 35
Score = 33.6 bits (78), Expect = 0.008
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ +S+L H +IH
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIH 35
Score = 29.0 bits (66), Expect = 0.27
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + + +C C K F++ L H R HTG
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTG 37
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 56.8 bits (138), Expect = 4e-11
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ GE+ +C C K F SN H + H+ KP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
E+ +C C K F SN H + H+ KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + + +C C K F + H R HTGEKP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 2e-04
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 250 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+ + C CGK F S +H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 38.3 bits (90), Expect = 2e-04
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + C CGK F S +H
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+C DCGK + +SN +HR+IH
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIH 35
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+C DCGK + +SN +HR+IH
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIH 35
Score = 28.7 bits (65), Expect = 0.45
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + + +C C K F + H R HTG
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 56.7 bits (138), Expect = 4e-11
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGEKP++CK C KAF+ ++L H + H+ KP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + +C C K+FS+ L H R HTGEKP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP++CK C KAF+ ++L H + H+ KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KP+ C++CGKAF+ ++L +H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 34.0 bits (79), Expect = 0.005
Identities = 8/23 (34%), Positives = 20/23 (86%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C++CGK +S +++L +H+++H
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVH 35
Score = 34.0 bits (79), Expect = 0.005
Identities = 8/23 (34%), Positives = 20/23 (86%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C++CGK +S +++L +H+++H
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVH 35
Score = 29.8 bits (68), Expect = 0.16
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + +C C K+FS+ L H R HTG
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTG 37
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 9e-11
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ GEKP++C C K+F+ L H TH++ KP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 43.3 bits (103), Expect = 3e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP++C C K+F+ L H TH++ KP
Sbjct: 10 EKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
QC C KSFS + L H THT EKP
Sbjct: 14 QCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 249 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
+ + KP+ C +CGK+F+ L +H + + EKP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHW--------ITHTREKPSGP 43
Score = 37.5 bits (88), Expect = 3e-04
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + KP+ C +CGK+F+ L +H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 34.1 bits (79), Expect = 0.004
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+QC +CGK +S S L +H H
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITH 35
Score = 34.1 bits (79), Expect = 0.004
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+QC +CGK +S S L +H H
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITH 35
Score = 30.2 bits (69), Expect = 0.12
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
QC C KSFS + L H THT
Sbjct: 14 QCSECGKSFSGSYRLTQHWITHTR 37
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 55.6 bits (135), Expect = 1e-10
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ TGE P++C C K F+ K L +H +THS
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
E P++C C K F+ K L +H +THS
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K FSR L H +TH+G+
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 249 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+ + + P+ C +CGK F+ K L H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 37.9 bits (89), Expect = 2e-04
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + P+ C +CGK F+ K L H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 32.9 bits (76), Expect = 0.011
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK +S L H++ H
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTH 35
Score = 32.9 bits (76), Expect = 0.011
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK +S L H++ H
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTH 35
Score = 29.8 bits (68), Expect = 0.16
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C C K FSR L H +TH+G
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSG 37
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 224 RTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+GE P++C C KAF K L +H +TH+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 44.0 bits (105), Expect = 1e-06
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+C C K+F+R L H RTH GE
Sbjct: 12 ECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
E P++C C KAF K L +H +TH+
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 8/47 (17%)
Query: 252 QTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKC 298
S P+ C +CGKAF K L H+ + + E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQ--------RTHAGESGPSS 41
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 316 QTHSKVKPFVCEKCGKAFALKSYLYKHE 343
S P+ C +CGKAF K L H+
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQ 30
Score = 32.9 bits (76), Expect = 0.012
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C +CGK ++ L H++ H
Sbjct: 11 YECSECGKAFNRKDQLISHQRTH 33
Score = 32.9 bits (76), Expect = 0.012
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C +CGK ++ L H++ H
Sbjct: 11 YECSECGKAFNRKDQLISHQRTH 33
Score = 30.9 bits (71), Expect = 0.055
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C K+F+R L H RTH G
Sbjct: 12 ECSECGKAFNRKDQLISHQRTHAG 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 55.0 bits (133), Expect = 1e-10
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 221 GHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 260
G + GE P+ C C K+F + +L H ++ S+ P
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 45.7 bits (109), Expect = 3e-07
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 286 SYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 324
S SS E P+ C C K+F + +L H ++ S+ P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 38.8 bits (91), Expect = 1e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFK 233
C C KSF++ L H R+ + P
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 34.2 bits (79), Expect = 0.004
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 249 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 279
+ P++C +CGK+F + L H+
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQ 31
Score = 34.2 bits (79), Expect = 0.004
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ P++C +CGK+F + L H+
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQ 31
Score = 32.6 bits (75), Expect = 0.015
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C CGK ++ +LA H++
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSC 34
Score = 32.6 bits (75), Expect = 0.015
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C CGK ++ +LA H++
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSC 34
Score = 29.6 bits (67), Expect = 0.16
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C KSF++ L H R+ +
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSCSQ 36
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 54.9 bits (133), Expect = 2e-10
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ + K +C C + F KS+L H + H+ KP
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 291 SSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
SS K +C C + F KS+L H + H+ KP
Sbjct: 8 SSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 250 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+ S K C +CG+ F LKS+L +H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ S K C +CG+ F LKS+L +H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
QC C + F+ L H R HTGEKP
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
QC +CG+ ++ S+L +H++IH
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
QC +CG+ ++ S+L +H++IH
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIH 35
Score = 27.9 bits (63), Expect = 0.80
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
QC C + F+ L H R HTG
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTG 37
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 55.1 bits (132), Expect = 3e-10
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 219 LQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+ H G++ KC C F T S+ K +CEKC K ++ L K
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
Query: 279 E 279
E
Sbjct: 59 E 59
Score = 45.8 bits (108), Expect = 7e-07
Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 15/80 (18%)
Query: 245 SNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKA 304
+ + H + C KCG F +S L S K C+ C K
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTL---------------SRRKTPMCEKCRKD 48
Query: 305 FADKSNLRAHIQTHSKVKPF 324
++ L S K
Sbjct: 49 SCQEAALNKDEGNESGKKTS 68
Score = 42.0 bits (98), Expect = 1e-05
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 158 TSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRPW 217
+S + + ++IH +++ C +CG +++ S C C K +
Sbjct: 2 SSGSSGKRQKIHLG---DRSQKCSKCGIIFIRRSTLSRRKTP-----MCEKCRKDSCQEA 53
Query: 218 LLQGHIRTHTGEKPF 232
L +G+K
Sbjct: 54 ALNKDEGNESGKKTS 68
Score = 40.4 bits (94), Expect = 5e-05
Identities = 12/81 (14%), Positives = 21/81 (25%), Gaps = 22/81 (27%)
Query: 309 SNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSNGHLNKFTTISFQ 368
+ + H + C KCG F +S L + + +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK----------------------TPM 41
Query: 369 CRDCGKHYSTSSNLARHRQIH 389
C C K + L +
Sbjct: 42 CEKCRKDSCQEAALNKDEGNE 62
Score = 37.7 bits (87), Expect = 5e-04
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 7/56 (12%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 260
+C C F T + K C+ C K ++ L S K
Sbjct: 20 KCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 37.3 bits (86), Expect = 7e-04
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 378 TSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRPW 437
+S + + ++IH +++ C +CG +++ S C C K +
Sbjct: 2 SSGSSGKRQKIHLG---DRSQKCSKCGIIFIRRSTLSRRKTP-----MCEKCRKDSCQEA 53
Query: 438 LLQGHIRTHTG 448
L +G
Sbjct: 54 ALNKDEGNESG 64
Score = 26.9 bits (59), Expect = 3.2
Identities = 4/34 (11%), Positives = 10/34 (29%)
Query: 136 TSTANNNNNESFQCRDCGKHYSTSSNLARHRQIH 169
+ + ++ C C K + L +
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNE 62
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 55.7 bits (134), Expect = 4e-10
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 9/73 (12%)
Query: 199 THNQICQCPHCSKSFSRPWLLQGHI-RTHTGEKPFKCKVC--------DKAFADKSNLRA 249
C ++FS L H+ H G VC K+F K L
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 250 HIQTHSKVKPFVC 262
HI+ H+ K
Sbjct: 81 HIRVHTGEKSGPS 93
Score = 54.6 bits (131), Expect = 9e-10
Identities = 21/89 (23%), Positives = 26/89 (29%), Gaps = 22/89 (24%)
Query: 147 FQCRDCGKHYSTSSNLARH-RQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQ 205
+ C + +ST L H H + C
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE--------------------- 64
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
CP KSF + L HIR HTGEK
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 53.0 bits (127), Expect = 3e-09
Identities = 17/103 (16%), Positives = 25/103 (24%), Gaps = 29/103 (28%)
Query: 225 THTGEKPFKCKVCDKAFADKSNLRAHIQ-THSKVKPFVCEKCGKAFALKSYLYKHEDSSC 283
+ K CD+ F+ L H+ H C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC------------------ 60
Query: 284 LKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
+C K+F K L HI+ H+ K
Sbjct: 61 ----------YWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 40.3 bits (94), Expect = 1e-04
Identities = 19/83 (22%), Positives = 24/83 (28%), Gaps = 22/83 (26%)
Query: 367 FQCRDCGKHYSTSSNLARH-RQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQ 425
+ C + +ST L H H + C
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE--------------------- 64
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
CP KSF + L HIR HTG
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTG 87
Score = 34.6 bits (79), Expect = 0.011
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 16/78 (20%)
Query: 317 THSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSNGHLNKFTTISFQCR-----D 371
+ C + F+ L H + H+ + C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTH-----------VTMEHVGGPEQNNHVCYWEECPR 67
Query: 372 CGKHYSTSSNLARHRQIH 389
GK + L H ++H
Sbjct: 68 EGKSFKAKYKLVNHIRVH 85
Score = 27.2 bits (60), Expect = 3.9
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 419 THNQICQCPHCSKSFSRPWLLQGHI-RTHTGGTN 451
C ++FS L H+ H GG
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE 54
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 53.5 bits (129), Expect = 4e-10
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 221 GHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKV 257
G R TG KPF+C CD++F+ +L H + H V
Sbjct: 1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 37.7 bits (88), Expect = 2e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKV 321
KPF+C CD++F+ +L H + H V
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 35.0 bits (81), Expect = 0.002
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 250 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+ + +KPF C C ++F+ +L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
Score = 35.0 bits (81), Expect = 0.002
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + +KPF C C ++F+ +L H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH 30
Score = 31.2 bits (71), Expect = 0.040
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 196 HLRTHNQI--CQCPHCSKSFSRPWLLQGHIRTH 226
R I QCP C +SFSR L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.2 bits (71), Expect = 0.040
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 416 HLRTHNQI--CQCPHCSKSFSRPWLLQGHIRTH 446
R I QCP C +SFSR L H + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.2 bits (71), Expect = 0.045
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
FQC DC + +S S +LA HR+ H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.2 bits (71), Expect = 0.045
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
FQC DC + +S S +LA HR+ H
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRH 34
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 53.7 bits (130), Expect = 6e-10
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHI-QTHSKVKPFVC 262
+ TG+KP++C C KAF ++L H H+ KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 39.1 bits (92), Expect = 7e-05
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHI-QTHSKVKPFVC 326
+KP++C C KAF ++L H H+ KP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 205 QCPHCSKSFSRPWLLQGHIR-THTGEKPFKC 234
+C C K+F + L H R HTGEKP
Sbjct: 14 ECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + + KP+ C +CGKAF + L +H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 32.2 bits (74), Expect = 0.022
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 147 FQCRDCGKHYSTSSNLARH-RQIH 169
++C +CGK + +++L RH R H
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYH 36
Score = 32.2 bits (74), Expect = 0.022
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 367 FQCRDCGKHYSTSSNLARH-RQIH 389
++C +CGK + +++L RH R H
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYH 36
Score = 24.8 bits (55), Expect = 9.7
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 425 QCPHCSKSFSRPWLLQGHIR-THTG 448
+C C K+F + L H R HTG
Sbjct: 14 ECIECGKAFIQNTSLIRHWRYYHTG 38
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 53.0 bits (128), Expect = 1e-09
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+ T K + C C KAF +L H + H++
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
K + C C KAF +L H + H++
Sbjct: 10 SKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 36.0 bits (84), Expect = 9e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ + K + C +CGKAF +L +H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 34.9 bits (81), Expect = 0.002
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 196 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
+ + C C K+F+R + L H + HT +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 146 SFQCRDCGKHYSTSSNLARHRQIH 169
S+ C +CGK ++ +L RH++IH
Sbjct: 12 SYNCNECGKAFTRIFHLTRHQKIH 35
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIH 389
S+ C +CGK ++ +L RH++IH
Sbjct: 12 SYNCNECGKAFTRIFHLTRHQKIH 35
Score = 29.5 bits (67), Expect = 0.21
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 416 HLRTHN--QICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ + C C K+F+R + L H + HT
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 52.6 bits (127), Expect = 1e-09
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
+ +GEK C C K F S LR H + H K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 40.3 bits (95), Expect = 2e-05
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 291 SSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 327
S EK C C K F S LR H + H K
Sbjct: 8 SGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 39.5 bits (93), Expect = 5e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 250 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 278
+ S K C++CGK F S L H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 39.5 bits (93), Expect = 5e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 314 HIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
+ S K C++CGK F S L H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 37.2 bits (87), Expect = 4e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C K+F L+ H R H GEK
Sbjct: 14 TCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 30.6 bits (70), Expect = 0.074
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 146 SFQCRDCGKHYSTSSNLARHRQIH 169
S C +CGK++ S L H+++H
Sbjct: 12 SHTCDECGKNFCYISALRIHQRVH 35
Score = 30.6 bits (70), Expect = 0.074
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIH 389
S C +CGK++ S L H+++H
Sbjct: 12 SHTCDECGKNFCYISALRIHQRVH 35
Score = 27.9 bits (63), Expect = 0.76
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C K+F L+ H R H G
Sbjct: 14 TCDECGKNFCYISALRIHQRVHMG 37
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 49.5 bits (119), Expect = 2e-08
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 224 RTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 260
+G++ ++C+ C K+F K +L H + H+ P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 289 SSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPF 324
SS ++ ++C+ C K+F K +L H + H+ P
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPF 232
+C C KSF + L H R HTG P
Sbjct: 12 ECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 34.5 bits (80), Expect = 0.003
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
++C++CGK + +L H +IH
Sbjct: 11 YECQECGKSFRQKGSLTLHERIH 33
Score = 34.5 bits (80), Expect = 0.003
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
++C++CGK + +L H +IH
Sbjct: 11 YECQECGKSFRQKGSLTLHERIH 33
Score = 33.7 bits (78), Expect = 0.006
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 322 KPFVCEKCGKAFALKSYLYKHE 343
+ + C++CGK+F K L HE
Sbjct: 9 RVYECQECGKSFRQKGSLTLHE 30
Score = 29.1 bits (66), Expect = 0.28
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C KSF + L H R HTG
Sbjct: 12 ECQECGKSFRQKGSLTLHERIHTG 35
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 50.3 bits (119), Expect = 4e-08
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 1/91 (1%)
Query: 163 ARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGH 222
+ ++ + C C S+ H R CP+CS F P L Q H
Sbjct: 2 SSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEH 61
Query: 223 IRTHTGEKPFKCKVCDKAFADKSNLRAHIQT 253
+ K C C + F ++ H
Sbjct: 62 -ESKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 45.3 bits (106), Expect = 2e-06
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
QC C+ S H R C C F + H ++ + K C +
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLE 74
Query: 265 CGKAFALKSYLYKHE 279
C + F +++H+
Sbjct: 75 CMRTFKSSFSIWRHQ 89
Score = 45.3 bits (106), Expect = 2e-06
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 228 GEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSY 287
++ ++C++C+ + +H + VC C F +HE
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHE-------- 62
Query: 288 DSSSSEKPFKCKVCDKAFADKSNLRAHIQT 317
S K C C + F ++ H
Sbjct: 63 -SKCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 42.6 bits (99), Expect = 2e-05
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 292 SEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSY 351
+++ ++C++C+ + +H + VC C F +HE K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHESKCEYKK- 69
Query: 352 DSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHR 386
C +C + + +S ++ RH+
Sbjct: 70 ---------------LTCLECMRTFKSSFSIWRHQ 89
Score = 39.5 bits (91), Expect = 3e-04
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 258 KPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQT 317
+ + C C + HE C C F + H ++
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHE----------RLCRNAAVCPYCSLRFFSPELKQEH-ES 63
Query: 318 HSKVKPFVCEKCGKAFALKSYLYKHE 343
+ K C +C + F +++H+
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 36.4 bits (83), Expect = 0.003
Identities = 14/67 (20%), Positives = 20/67 (29%)
Query: 383 ARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGH 442
+ ++ + C C S+ H R CP+CS F P L Q H
Sbjct: 2 SSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEH 61
Query: 443 IRTHTGG 449
Sbjct: 62 ESKCEYK 68
Score = 35.3 bits (80), Expect = 0.008
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHN-QICQ 425
+QCR C S+ H ++ R+ A CP C + S H +
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERLCRN-----AAVCPYCSLRFFSPELKQEHESKCEYKKLT 71
Query: 426 CPHCSKSFSRPWLLQGH 442
C C ++F + + H
Sbjct: 72 CLECMRTFKSSFSIWRH 88
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 47.7 bits (114), Expect = 6e-08
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 224 RTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 262
+GEKP+ C C + F+D + L H + H+
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 36.9 bits (86), Expect = 5e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVC 326
EKP+ C C + F+D + L H + H+
Sbjct: 8 EKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 36.5 bits (85), Expect = 6e-04
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 253 THSKVKPFVCEKCGKAFALKSYLYKHE 279
S KP+ C +C + F+ + L +H+
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQ 30
Score = 36.5 bits (85), Expect = 6e-04
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 317 THSKVKPFVCEKCGKAFALKSYLYKHE 343
S KP+ C +C + F+ + L +H+
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQ 30
Score = 34.2 bits (79), Expect = 0.004
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFKC 234
C C ++FS L H + HT +
Sbjct: 12 SCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 33.5 bits (77), Expect = 0.007
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
+ C +C + +S ++ L +H+++H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMH 33
Score = 33.5 bits (77), Expect = 0.007
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
+ C +C + +S ++ L +H+++H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMH 33
Score = 29.2 bits (66), Expect = 0.25
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C ++FS L H + HT
Sbjct: 12 SCAECKETFSDNNRLVQHQKMHTV 35
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 49.9 bits (118), Expect = 8e-08
Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 14/120 (11%)
Query: 203 ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKC----KVCDKAFADKSNLRAHIQTHSKVK 258
+ + L + H T ++ + + + D+S+ + +
Sbjct: 14 LSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAIS 73
Query: 259 PFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTH 318
FVC C F+ L +H +E C VC K F + H+
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHI----------RYTEHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 49.2 bits (116), Expect = 2e-07
Identities = 23/112 (20%), Positives = 32/112 (28%), Gaps = 4/112 (3%)
Query: 143 NNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQ 202
N++ + L ++ PQ L S Y +
Sbjct: 16 NHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ--LLDESSYLYRLLASKAIS 73
Query: 203 ICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTH 254
CP C FS L+ HIR E C VC K F + H+
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 45.3 bits (106), Expect = 4e-06
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 2/81 (2%)
Query: 198 RTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKV 257
R I + + + F C +C F+ +L+ HI+
Sbjct: 41 RLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE-- 98
Query: 258 KPFVCEKCGKAFALKSYLYKH 278
VC C K F H
Sbjct: 99 HTKVCPVCKKEFTSTDSALDH 119
Score = 44.5 bits (104), Expect = 6e-06
Identities = 12/66 (18%), Positives = 19/66 (28%)
Query: 385 HRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGHIR 444
+ + CP C + S + H+R CP C K F+ H+
Sbjct: 62 YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSALDHVC 121
Query: 445 THTGGT 450
Sbjct: 122 KKHNIC 127
Score = 44.2 bits (103), Expect = 8e-06
Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 14/125 (11%)
Query: 218 LLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYK 277
+ ++ H G V + L + + + SYLY+
Sbjct: 9 GSKKYLSNHKG---IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYR 65
Query: 278 HEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKS 337
+S + F C +C F+ +L+ HI+ VC C K F
Sbjct: 66 LL---------ASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTD 114
Query: 338 YLYKH 342
H
Sbjct: 115 SALDH 119
Score = 37.6 bits (86), Expect = 0.002
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 146 SFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQIC 204
F C C +S+S +L +H + + CP C K + S + H+ + IC
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTEHT-----KVCPVCKKEFTSTDSALDHVCKKHNIC 127
Score = 37.6 bits (86), Expect = 0.002
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQIC 424
F C C +S+S +L +H + + CP C K + S + H+ + IC
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHIRYTEHT-----KVCPVCKKEFTSTDSALDHVCKKHNIC 127
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 45.6 bits (108), Expect = 4e-07
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
+ GE PFKC CD+ F ++ L H +TH+
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 39.8 bits (93), Expect = 4e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 289 SSSSEKPFKCKVCDKAFADKSNLRAHIQTHS 319
S + E PFKC CD+ F ++ L H +TH+
Sbjct: 6 SGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 36.8 bits (85), Expect = 6e-04
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 249 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 279
+ + + PF C KC + F ++YL +HE
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHE 32
Score = 36.8 bits (85), Expect = 6e-04
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 313 AHIQTHSKVKPFVCEKCGKAFALKSYLYKHE 343
+ + + PF C KC + F ++YL +HE
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHE 32
Score = 31.4 bits (71), Expect = 0.036
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKP 231
+C C + F++ L H RTH +
Sbjct: 14 KCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 30.2 bits (68), Expect = 0.11
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIH 169
F+C C + ++ + L +H + H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTH 35
Score = 30.2 bits (68), Expect = 0.11
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C C + ++ + L +H + H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTH 35
Score = 28.7 bits (64), Expect = 0.44
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
+C C + F++ L H RTH
Sbjct: 14 KCSKCDRVFTQRNYLVQHERTHAR 37
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 44.9 bits (106), Expect = 7e-07
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 224 RTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKC 265
+ K C++C K F D +L H +HS KP+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 43.4 bits (102), Expect = 2e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 289 SSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKC 329
S + K C++C K F D +L H +HS KP+
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 42.6 bits (100), Expect = 4e-06
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVC 237
C C K F + L H +H+GEKP+
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.0 bits (75), Expect = 0.013
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 253 THSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVC 301
+ K CE CGK F +L +H+ S S EKP+
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHK--------LSHSGEKPYSSGPS 46
Score = 30.7 bits (69), Expect = 0.082
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 424 CQCPHCSKSFSRPWLLQGHIRTHTG 448
C C K F + L H +H+G
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSG 37
Score = 29.5 bits (66), Expect = 0.19
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 136 TSTANNNNNESFQCRDCGKHYSTSSNLARHRQIH 169
+S ++ + C CGK + +L RH+ H
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 29.1 bits (65), Expect = 0.28
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIH 389
C CGK + +L RH+ H
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSH 35
Score = 29.1 bits (65), Expect = 0.30
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 317 THSKVKPFVCEKCGKAFALKSYLYKHE 343
+ K CE CGK F +L +H+
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHK 32
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 47.9 bits (113), Expect = 6e-06
Identities = 27/241 (11%), Positives = 56/241 (23%), Gaps = 19/241 (7%)
Query: 51 DYASDSSDLDDDDDDPRLQINEDEAEMSDPVSTSSQSSSEPVASFDPAYDHLYNLTQLAE 110
+S + + D D+ +T+ +S +
Sbjct: 10 GKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNR-EQYRARPGIASVQRATES 68
Query: 111 VSLAYFNQSNSFNRKSVICNTKDVDTSTANNNNNESFQCRDCGKHYSTSSNLARHRQIHR 170
L N K V+ + + + K +
Sbjct: 69 AELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQ----KQAKDTDKSKAQVTYSD 124
Query: 171 SPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEK 230
+ + V S +I + S S+ G T +
Sbjct: 125 TGINNANELSRSGN---VDNEGGSNQKPMSTRIAEAT--SAIVSKHPARVGLPPTASSGH 179
Query: 231 PFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSS 290
++C VC +L AH+ +H L S + + + S+ +
Sbjct: 180 GYQCHVCSAVLFSPLDLDAHVASHGL---------HGNMTLTSSEIQRHITEFISSWQNH 230
Query: 291 S 291
Sbjct: 231 P 231
Score = 36.8 bits (84), Expect = 0.016
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIHRSPDDT 395
+QC C + +L H H +
Sbjct: 180 GYQCHVCSAVLFSPLDLDAHVASHGLHGNM 209
Score = 36.0 bits (82), Expect = 0.030
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 288 DSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSC 347
++SS ++C VC +L AH+ +H L S + +
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL---------HGNMTLTSSEIQRHITEF 223
Query: 348 LKSYDSSS 355
+ S+ +
Sbjct: 224 ISSWQNHP 231
Score = 35.6 bits (81), Expect = 0.041
Identities = 10/96 (10%), Positives = 22/96 (22%)
Query: 288 DSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSC 347
+ + + T S + C C L H S
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Query: 348 LKSYDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLA 383
L + ++ + + T S+++
Sbjct: 205 LHGNMTLTSSEIQRHITEFISSWQNHPIVQVSADVE 240
Score = 34.8 bits (79), Expect = 0.072
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 395 TKARTCPQCGKLYVSMPAYSMHLRTHNQIC--QCPHCSKSFSRPWLLQGHIRTHTGGTN 451
R + PA T + QC CS P L H+ +H N
Sbjct: 150 MSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
Score = 31.4 bits (70), Expect = 0.75
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 390 RSPDDTKARTCPQCGKLYVSMPAYSMHLRTH 420
+ C C + S H+ +H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 43.5 bits (103), Expect = 1e-05
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 9/126 (7%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQT-HSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSY 287
EKP +C CD+ +A Q H +K F C C A + Y+ ++ C Y
Sbjct: 2 EKP-RCAGCDELIFSNEYTQAENQNWH--LKHFCCFDCDSILAGEIYVMVNDKPVCKPCY 58
Query: 288 DSSSSEKPFKCKVCDKAFADKSNLRAHIQT--HSKVKPFVCEKCGKAFALKSYLYKHEDS 345
+ + C+ C A + + H+ + F+C C K + ++
Sbjct: 59 VKNHAV---VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMV 115
Query: 346 SCLKSY 351
C
Sbjct: 116 FCSVEC 121
Score = 28.5 bits (64), Expect = 1.9
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 292 SEKPFKCKVCDKAFADKSNLRAHIQT-HSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKS 350
SEKP +C CD+ +A Q H +K F C C A + Y+ ++ C
Sbjct: 1 SEKP-RCAGCDELIFSNEYTQAENQNWH--LKHFCCFDCDSILAGEIYVMVNDKPVCKPC 57
Query: 351 YDS 353
Y
Sbjct: 58 YVK 60
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 39.8 bits (93), Expect = 5e-05
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 218 LLQGHIRTHTGEKP---FKCKV--CDKAFADKSNLRAHIQTH 254
L +G I + E P F+C C K F + N+R+HIQTH
Sbjct: 2 LPRGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 38.3 bits (89), Expect = 2e-04
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 284 LKSYDSSSSEKPFKCKV--CDKAFADKSNLRAHIQTH 318
+ Y +K F+C C K F + N+R+HIQTH
Sbjct: 7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 33.7 bits (77), Expect = 0.006
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 203 ICQCPHCSKSFSRPWLLQGHIRTHTGEK 230
C P C+K+F R + ++ HI+TH ++
Sbjct: 20 ECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 32.1 bits (73), Expect = 0.026
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 423 ICQCPHCSKSFSRPWLLQGHIRTHTG 448
C P C+K+F R + ++ HI+TH
Sbjct: 20 ECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 25.2 bits (55), Expect = 8.1
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 144 NESFQCR--DCGKHYSTSSNLARHRQIH 169
+++F+C C K + N+ H Q H
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTH 43
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 38.0 bits (89), Expect = 1e-04
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 203 ICQCPHCSKSFSRPWLLQGHIRTHTGEK 230
+C +C K F+R LQ H RTHTGEK
Sbjct: 4 MCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 33.7 bits (78), Expect = 0.004
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 423 ICQCPHCSKSFSRPWLLQGHIRTHTG 448
+C +C K F+R LQ H RTHTG
Sbjct: 4 MCTWSYCGKRFTRSDELQRHKRTHTG 29
Score = 30.7 bits (70), Expect = 0.049
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 230 KPFKCKV--CDKAFADKSNLRAHIQTHSKVK 258
+PF C C K F L+ H +TH+ K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.7 bits (70), Expect = 0.049
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 294 KPFKCKV--CDKAFADKSNLRAHIQTHSKVK 322
+PF C C K F L+ H +TH+ K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 29.5 bits (67), Expect = 0.15
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 147 FQC--RDCGKHYSTSSNLARHRQIH 169
F C CGK ++ S L RH++ H
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 29.5 bits (67), Expect = 0.15
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 367 FQC--RDCGKHYSTSSNLARHRQIH 389
F C CGK ++ S L RH++ H
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTH 27
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 37.7 bits (88), Expect = 2e-04
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEK 230
C C+++F+R L+ H R+HT EK
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 34.6 bits (80), Expect = 0.002
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
+ F C+VC +AFA + +L+ H ++H+ K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 34.6 bits (80), Expect = 0.002
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
+ F C+VC +AFA + +L+ H ++H+ K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.1 bits (76), Expect = 0.007
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
C C+++F+R L+ H R+HT
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTN 27
Score = 27.7 bits (62), Expect = 0.64
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 258 KPFVCEKCGKAFALKSYLYKHEDS 281
+ FVCE C +AFA + +L +H S
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
Score = 27.7 bits (62), Expect = 0.64
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 322 KPFVCEKCGKAFALKSYLYKHEDS 345
+ FVCE C +AFA + +L +H S
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 36.2 bits (84), Expect = 6e-04
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 198 RTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEK 230
+ H IC C K + + L+ H+R HTGE+
Sbjct: 7 KQH--ICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 32.3 bits (74), Expect = 0.016
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 418 RTHNQICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ H IC C K + + L+ H+R HTG
Sbjct: 7 KQH--ICHIQGCGKVYGKTSHLRAHLRWHTG 35
Score = 31.9 bits (73), Expect = 0.024
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 290 SSSEKPFKCKV--CDKAFADKSNLRAHIQTHS 319
+K C + C K + S+LRAH++ H+
Sbjct: 3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
Score = 30.4 bits (69), Expect = 0.073
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 227 TGEKPFKCKV--CDKAFADKSNLRAHIQTHS 255
+K C + C K + S+LRAH++ H+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
Score = 25.4 bits (56), Expect = 4.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 151 DCGKHYSTSSNLARHRQIH 169
CGK Y +S+L H + H
Sbjct: 15 GCGKVYGKTSHLRAHLRWH 33
Score = 25.4 bits (56), Expect = 4.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 371 DCGKHYSTSSNLARHRQIH 389
CGK Y +S+L H + H
Sbjct: 15 GCGKVYGKTSHLRAHLRWH 33
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 35.1 bits (80), Expect = 0.001
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEK 230
C HC + F+ P LQ H+R HTGEK
Sbjct: 6 CIHCQRQFADPGALQRHVRIHTGEK 30
Score = 32.8 bits (74), Expect = 0.009
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
KP+ C C + FAD L+ H++ H+ K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 32.8 bits (74), Expect = 0.009
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
KP+ C C + FAD L+ H++ H+ K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 31.6 bits (71), Expect = 0.023
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 426 CPHCSKSFSRPWLLQGHIRTHTG 448
C HC + F+ P LQ H+R HTG
Sbjct: 6 CIHCQRQFADPGALQRHVRIHTG 28
Score = 26.3 bits (57), Expect = 2.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 257 VKPFVCEKCGKAFALKSYLYKHE 279
+KP+VC C + FA L +H
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHV 23
Score = 26.3 bits (57), Expect = 2.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 321 VKPFVCEKCGKAFALKSYLYKHE 343
+KP+VC C + FA L +H
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHV 23
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 35.1 bits (80), Expect = 0.002
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 226 HTGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
+G++PF C++C AF K+N H++ H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 32.4 bits (73), Expect = 0.015
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 290 SSSEKPFKCKVCDKAFADKSNLRAHIQTHS 319
SS ++PF C++C AF K+N H++ H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 24.7 bits (53), Expect = 9.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 141 NNNNESFQCRDCGKHYSTSSNLARHRQIH 169
++ F CR C ++T +N ARH ++H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 34.9 bits (79), Expect = 0.002
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 289 SSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
S SS KPFKC +C+ A KSNL+AH+ HS K
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 32.2 bits (72), Expect = 0.020
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
KPFKC +C+ A KSNL+AH+ HS K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 37.1 bits (85), Expect = 0.007
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 7/62 (11%)
Query: 206 CPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKC 265
K H GEK + + ++ + +LR I +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH-------LSVLRQ 235
Query: 266 GK 267
GK
Sbjct: 236 GK 237
Score = 31.3 bits (70), Expect = 0.46
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 278 HEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGK 331
H S + + EK + + ++ + +LR I + GK
Sbjct: 191 HSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH-------LSVLRQGK 237
Score = 29.0 bits (64), Expect = 2.6
Identities = 11/65 (16%), Positives = 16/65 (24%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDS 281
IR + + + K S H K EK + L
Sbjct: 171 DIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHL 230
Query: 282 SCLKS 286
S L+
Sbjct: 231 SVLRQ 235
Score = 29.0 bits (64), Expect = 3.0
Identities = 16/133 (12%), Positives = 34/133 (25%), Gaps = 4/133 (3%)
Query: 259 PFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKP--FKCKVCDKAFADKSNLRAHIQ 316
P+ + + + + + D + S E + V + NL A Q
Sbjct: 101 PYEGQISTQDKSAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLA-FQ 159
Query: 317 THSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSNGHLNKFTTISFQCRDCGKHY 376
++ C L+ + Y + L S + Q +
Sbjct: 160 HSERIYFRACRDIRPGEWLRVW-YSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVL 218
Query: 377 STSSNLARHRQIH 389
+L +
Sbjct: 219 DNPEDLRGPIHLS 231
Score = 28.6 bits (63), Expect = 3.2
Identities = 9/53 (16%), Positives = 12/53 (22%)
Query: 298 CKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKS 350
+ K S H K EK + L S L+
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.5 bits (73), Expect = 0.013
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 198 RTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEK 230
+ +I C +C+K F LQ H+R HT EK
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 30.2 bits (67), Expect = 0.099
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 289 SSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
S SS K F C+ C+K F K +L+AH++ H+ K
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 29.0 bits (64), Expect = 0.22
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 418 RTHNQICQCPHCSKSFSRPWLLQGHIRTHTG 448
+ +I C +C+K F LQ H+R HT
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
Score = 27.9 bits (61), Expect = 0.65
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
K F C+ C+K F K +L+AH++ H+ K
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.8 bits (53), Expect = 8.1
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 171 SPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQ 202
S K TC C K++ + HLR H
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
Score = 24.8 bits (53), Expect = 8.1
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 391 SPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQ 422
S K TC C K++ + HLR H
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 34.4 bits (78), Expect = 0.013
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 222 HIRTHTGEKPFKCKVCDKAFADKSNLRAHIQT-HSKVK---PFVCEKCGKAFALKSYLYK 277
+ + E ++CK C D + H+ + H V +VC +C L +
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 278 H 278
H
Sbjct: 69 H 69
Score = 31.7 bits (71), Expect = 0.13
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 285 KSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQT-HSKVK---PFVCEKCGKAFALKSYLY 340
+ + E ++CK C D + H+ + H V +VC +C L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 341 KH 342
+H
Sbjct: 68 EH 69
Score = 30.9 bits (69), Expect = 0.22
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 165 HRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTH------NQICQCPHCSKSFSRPWL 218
H ++ C C + ++ H+ + N C C+ R
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 219 LQGHI-RTHTGEKPFKCKV 236
L H + H GE+ FK +
Sbjct: 66 LSEHNLKYHPGEENFKLTM 84
Score = 29.7 bits (66), Expect = 0.49
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 12/89 (13%)
Query: 309 SNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSNGHLNKFTTISFQ 368
+ + Q + C+ C + H DS H N S+
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSE-----------HPNVVLNSSYV 52
Query: 369 CRDCGKHYSTSSNLARH-RQIHRSPDDTK 396
C +C L+ H + H ++ K
Sbjct: 53 CVECNFLTKRYDALSEHNLKYHPGEENFK 81
Score = 29.4 bits (65), Expect = 0.77
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 4/74 (5%)
Query: 245 SNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKA 304
+ + Q + C+ C + H DS + + + C C+
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSE----HPNVVLNSSYVCVECNFL 59
Query: 305 FADKSNLRAHIQTH 318
L H +
Sbjct: 60 TKRYDALSEHNLKY 73
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 32.6 bits (73), Expect = 0.016
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 226 HTGEKPFKCKVCDKAFADKSNLRAHIQTHS 255
+GEKP+ C VC F K + H+++H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 31.4 bits (70), Expect = 0.043
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 290 SSSEKPFKCKVCDKAFADKSNLRAHIQTHS 319
SS EKP+ C VC F K + H+++H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.018
Identities = 31/232 (13%), Positives = 60/232 (25%), Gaps = 82/232 (35%)
Query: 68 LQINEDEAEMSDPVSTS-----SQ-----SSSEPVASFDPAYD-------HLY------- 103
L ++ E V T+ SQ + P + A D L
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 104 -------NLTQLAEVSLAYFNQSNSFNRKSVICNTKDVDTSTAN---NNNNESFQCRDCG 153
+ Q +V + F D+ A N+ + ++
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTE---FENC--YLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 154 KHYSTSSNLARH--RQIHRSP-----DDTKARTCPQCG-------------KLYVSMPAY 193
K+Y T+ +A+ + S + A+ G LY +
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 194 --------SMHLRTHNQICQCPH-CSKSFSRP-----WLLQGHIRTHTGEKP 231
+ L +++ + K F++ WL + P
Sbjct: 184 VGDLIKFSAETL---SELIRTTLDAEKVFTQGLNILEWL------ENPSNTP 226
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.1 bits (72), Expect = 0.022
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 289 SSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
S SS KP+KC C A A K+NL H++ H+ K
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.8 bits (66), Expect = 0.12
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
+ KP+KC C A A K+NL H++ H+ K
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.2 bits (54), Expect = 7.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEK 230
+CP CS + + L H+R HTGEK
Sbjct: 11 KCPQCSYASAIKANLNVHLRKHTGEK 36
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 35.5 bits (82), Expect = 0.035
Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 26/100 (26%)
Query: 234 CKVCDKAFADKSNLRAHIQTHSKVKPFV-CEKCGKAFALKSYLYKHEDSSCLKSYD-SSS 291
C+ C + D + R PF+ C CG F++ + YD + +
Sbjct: 114 CEDCLRELKDPKDRRYRY-------PFINCTNCGPRFSIIEDI----------PYDRAKT 156
Query: 292 SEKPFK-CKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCG 330
S K F C+ C + + D + R H Q + C CG
Sbjct: 157 SMKVFPMCEKCSREYHDPHDRRFHAQPVA------CFDCG 190
Score = 32.4 bits (74), Expect = 0.32
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 224 RTHTGEKPFK-CKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCG 266
R T K F C+ C + + D + R H Q + C CG
Sbjct: 153 RAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVA------CFDCG 190
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 30.9 bits (69), Expect = 0.041
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEK 230
CQC C K+F++ L H+R HTGEK
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.6 bits (63), Expect = 0.31
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 258
KP +C +C KAF S+L AH++ H+ K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.6 bits (63), Expect = 0.31
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVK 322
KP +C +C KAF S+L AH++ H+ K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.8 bits (61), Expect = 0.67
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 424 CQCPHCSKSFSRPWLLQGHIRTHTG 448
CQC C K+F++ L H+R HTG
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTG 27
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 31.8 bits (71), Expect = 0.087
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 146 SFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKL-YVSMPAYSMHLRTHNQ-I 203
S K + + Q + D + +CP C + ++ H+ Q +
Sbjct: 3 SGSSGRIRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM 62
Query: 204 CQCPHCSKSFSRPWLLQGHIRTHTGEKPF 232
C HC K ++ H+ + P
Sbjct: 63 FTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Score = 29.5 bits (65), Expect = 0.58
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKL-YVSMPAYSMHLRTHNQ-I 423
S K + + Q + D + +CP C + ++ H+ Q +
Sbjct: 3 SGSSGRIRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM 62
Query: 424 CQCPHCSKSFSRPWLLQGHIRT 445
C HC K ++ H+
Sbjct: 63 FTCHHCGKQLRSLAGMKYHVMA 84
Score = 28.3 bits (62), Expect = 1.4
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 206 CPHCSK-SFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCE 263
CP C L+ H+ ++ F C C K + ++ H+ + P
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPS 94
Score = 27.5 bits (60), Expect = 3.4
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 287 YDSSSSEKPFKCKVCDKA-FADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKH 342
Y + C C L+ H++ + + F C CGK + + H
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMKYH 81
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.18
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 20/47 (42%)
Query: 272 KSYLYKHEDSSCLKSY--DSSSSEKPFKCKVCDKAFADKSNLRAHIQ 316
K L K + S LK Y DS+ P A A ++A ++
Sbjct: 19 KQALKKLQAS--LKLYADDSA----P--------ALA----IKATME 47
Score = 30.7 bits (68), Expect = 0.52
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 11/26 (42%)
Query: 52 YASDSSDLDDDDDDPRLQINEDEAEM 77
YA DS+ P L I A M
Sbjct: 32 YADDSA--------PALAIK---ATM 46
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 31.2 bits (71), Expect = 0.18
Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 260 FVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAF-ADKSNLRAHIQT- 317
F C KC A ++++ K C K S KCK C KA A N+
Sbjct: 34 FRCAKCLHPLANETFVAKDNKILCNKCTTREDSP---KCKGCFKAIVAGDQNVEYKGTVW 90
Query: 318 HSKVKPFVCEKCG 330
H F G
Sbjct: 91 HKDC--FSGPSSG 101
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (66), Expect = 0.19
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 136 TSTANNNNNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTK 176
+S ++ + +S QCR+CG+ + +L H+ +H ++
Sbjct: 2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
Score = 27.9 bits (61), Expect = 0.74
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIHRSPDDTK 396
S QCR+CG+ + +L H+ +H ++
Sbjct: 12 SHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
Score = 25.5 bits (55), Expect = 6.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 286 SYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTH 318
S S S EK +C+ C + F +L H H
Sbjct: 3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLH 35
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (65), Expect = 0.21
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 225 THTGEKPFKCKVCDKAFADKSNLRAHIQTHSK 256
+ EK FKC C+K F+ L H + H++
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 29.0 bits (64), Expect = 0.29
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 253 THSKVKPFVCEKCGKAFALKSYLYKHE 279
+ K K F C KC K F+ YL +HE
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHE 32
Score = 29.0 bits (64), Expect = 0.29
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 317 THSKVKPFVCEKCGKAFALKSYLYKHE 343
+ K K F C KC K F+ YL +HE
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHE 32
Score = 27.9 bits (61), Expect = 0.73
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 289 SSSSEKPFKCKVCDKAFADKSNLRAHIQTHSK 320
S EK FKC C+K F+ L H + H++
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
Score = 27.1 bits (59), Expect = 1.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 136 TSTANNNNNESFQCRDCGKHYSTSSNLARHRQIH 169
+S ++ + F+C C K +S S L +H +IH
Sbjct: 2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 25.9 bits (56), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIH 389
F+C C K +S S L +H +IH
Sbjct: 13 FKCNKCEKTFSCSKYLTQHERIH 35
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 31.4 bits (71), Expect = 0.30
Identities = 30/167 (17%), Positives = 48/167 (28%), Gaps = 15/167 (8%)
Query: 227 TGEKPFKCKVCDKAFADKSNLRAHIQT-HSKVKPFVCEKCGKAFALKSYLYKHEDSSCLK 285
+ + C CD+ D+ L+A + HSK C C A + + + E C
Sbjct: 2 STPEIPMCAGCDQHILDRFILKALDRHWHSKC--LKCSDCHVPLAERCF-SRGESVYCKD 58
Query: 286 SYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDS 345
+ K C C +R + F C C + A Y EDS
Sbjct: 59 DFFKRFGTK---CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDS 115
Query: 346 SCLKSYDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSP 392
+ D + G + +A + H
Sbjct: 116 RLVCKAD-----YETAKQG---GSGGSGGSGGGTPMVAASPERHDGG 154
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 31.1 bits (69), Expect = 0.31
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHS---KVKPFVCEKCGKAFALKSYLYKHEDSSCLKS 286
+CKVC +S AH Q+ KV+ ++ G+ + +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSV------PAKKFKAAPA 84
Query: 287 YDSSSSEKPFKCKVCDKAFADKSNLRAHIQ 316
S ++ C VC+ F+ +H
Sbjct: 85 EISDGEDRSKCCPVCNMTFSSPVVAESHYI 114
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 32.0 bits (73), Expect = 0.41
Identities = 24/100 (24%), Positives = 31/100 (31%), Gaps = 26/100 (26%)
Query: 234 CKVCDKAFADKSNLRAHIQTHSKVKPFV-CEKCGKAFALKSYLYKHEDSSCLKSYD-SSS 291
C C R PF+ C CG F + + YD +
Sbjct: 20 CPACLAEMNTPGERRYRY-------PFINCTHCGPRFTIIRAM----------PYDRPFT 62
Query: 292 SEKPFK-CKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCG 330
F C CDK + D + R H Q P C +CG
Sbjct: 63 VMAAFPLCPACDKEYRDPLDRRFHAQ------PVACPECG 96
Score = 32.0 bits (73), Expect = 0.49
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 224 RTHTGEKPFK-CKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCG 266
R T F C CDK + D + R H Q P C +CG
Sbjct: 59 RPFTVMAAFPLCPACDKEYRDPLDRRFHAQ------PVACPECG 96
Score = 28.6 bits (64), Expect = 5.5
Identities = 21/91 (23%), Positives = 26/91 (28%), Gaps = 26/91 (28%)
Query: 347 CLK-SYDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKART------ 399
CL + F C CG ++ I P D + T
Sbjct: 23 CLAEMNTPGERRYRYPFIN----CTHCGPRFTI---------IRAMPYD-RPFTVMAAFP 68
Query: 400 -CPQCGKLYVSMPAYSMHLRTHNQICQCPHC 429
CP C K Y + R H Q CP C
Sbjct: 69 LCPACDKEYRD----PLDRRFHAQPVACPEC 95
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.2 bits (70), Expect = 0.43
Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 12/55 (21%)
Query: 131 TKDVDTSTANNNNNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKART-CPQCG 184
+ D N N C +C + ++ C CG
Sbjct: 6 SIDKRAGRRGPNLNIVLTCPECK---VYPPKIVE--------RFSEGDVVCALCG 49
Score = 28.5 bits (63), Expect = 3.3
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 384 RHRQIHRSPDDTKARTCPQCG 404
R R P+ TCP+C
Sbjct: 8 DKRAGRRGPNLNIVLTCPECK 28
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 28.3 bits (63), Expect = 0.45
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEKPFK 233
CP C K F R L HI H +
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 27.2 bits (60), Expect = 1.1
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 232 FKCKVCDKAFADKSNLRAHIQTHSKVKP 259
F C C K F +L HI H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 27.2 bits (60), Expect = 1.1
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 296 FKCKVCDKAFADKSNLRAHIQTHSKVKP 323
F C C K F +L HI H +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 26.8 bits (59), Expect = 1.6
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
CP C K F R L HI H
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHEL 27
Score = 26.0 bits (57), Expect = 2.9
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTK 176
F C +C K + S +L++H +H + +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 26.0 bits (57), Expect = 2.9
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRSPDDTK 396
F C +C K + S +L++H +H + +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 27.9 bits (62), Expect = 0.45
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 205 QCPHCSKSFSRPWLLQGHIRTHTGEK 230
CP C K F R L HI H +K
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHENKK 29
Score = 26.8 bits (59), Expect = 1.5
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 232 FKCKVCDKAFADKSNLRAHIQTHSKVK 258
F C C K F +L HI H K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 26.8 bits (59), Expect = 1.5
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 296 FKCKVCDKAFADKSNLRAHIQTHSKVK 322
F C C K F +L HI H K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 26.0 bits (57), Expect = 2.2
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 425 QCPHCSKSFSRPWLLQGHIRTHTG 448
CP C K F R L HI H
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHEN 27
Score = 24.9 bits (54), Expect = 7.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRS 171
F C +C K + S +L H +H +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHEN 27
Score = 24.9 bits (54), Expect = 7.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 367 FQCRDCGKHYSTSSNLARHRQIHRS 391
F C +C K + S +L H +H +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHEN 27
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 32.1 bits (72), Expect = 0.48
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 13/146 (8%)
Query: 41 PANSHLPGVSDYASDSSDLDDDDDDPRLQINEDEAEMSDPVSTSS----QSSSEPVASFD 96
PA++++ D + +S P + + + VS+ S S P +S +
Sbjct: 16 PADTNVVPAKDAPTTNSP--PSTTSPNQAAADANQQQAGIVSSQSGPNAVGDSAPSSSVN 73
Query: 97 PAYDHLYNLTQLAEVSLAYFNQSNSFNRKSVICNTKDVDTSTANNNNNESFQCRDCGKHY 156
D S + +N+ +V+ + + + + N + S+ C C +
Sbjct: 74 NDGD-----IITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPS--SYVCNVCNARF 126
Query: 157 STSSNLARHRQIHRSPDDTKARTCPQ 182
ST S L+ H + D + P
Sbjct: 127 STMSALSEHLRSDHRDDASTLLATPM 152
Score = 29.4 bits (65), Expect = 3.4
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQ 402
S+ C C +ST S L+ H + D + P
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPM 152
Score = 28.2 bits (62), Expect = 6.6
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDS 289
+ C VC+ F+ S L H+++ + + L + + + S L ++D
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRD--------DASTLLATPMINNAIRSFLTAWDD 166
Query: 290 SSSEKPFKCKVCDKAFAD 307
P A+ D
Sbjct: 167 IRILSPDVSSKSLSAYLD 184
Score = 27.9 bits (61), Expect = 9.5
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 289 SSSSEKPFKCKVCDKAFADKSNLRAHIQT-HS 319
+ + C VC+ F+ S L H+++ H
Sbjct: 110 PIVNPSSYVCNVCNARFSTMSALSEHLRSDHR 141
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 30.8 bits (69), Expect = 0.51
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 4/103 (3%)
Query: 175 TKARTCPQCGKLYVSMPAY---SMHLRTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEKP 231
CP ++ + + + + +CP+ + H
Sbjct: 51 DAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFAL 110
Query: 232 FKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSY 274
C C + F K ++ HI + C+ C + A +
Sbjct: 111 MDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFEDK 152
Score = 28.9 bits (64), Expect = 2.1
Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 17/142 (11%)
Query: 205 QCPHCSKSFSRPWLLQ-GH------IRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKV 257
+CP C + GH I + KC V ++ + + +
Sbjct: 20 ECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL 79
Query: 258 KPFV-CEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQ 316
V C G ++ + + C C C + F K ++ HI
Sbjct: 80 SLMVKCPNEGCLHKMELRHLEDHQAHCEF--------ALMDCPQCQRPF-QKFHINIHIL 130
Query: 317 THSKVKPFVCEKCGKAFALKSY 338
+ C+ C + A +
Sbjct: 131 KDCPRRQVSCDNCAASMAFEDK 152
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 31.1 bits (70), Expect = 0.53
Identities = 23/160 (14%), Positives = 42/160 (26%), Gaps = 10/160 (6%)
Query: 147 FQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQC 206
F C C K+ +++ +I+ + P+ + S
Sbjct: 35 FLCMVCKKNLDSTTVAVHGDEIYCKSC-YGKKYGPKGKGKGMGAGTLSTDKGES---LGI 90
Query: 207 PHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQT-HSKVKPFVCEKC 265
+ RP C C +A + ++ H F C KC
Sbjct: 91 KYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSC--FRCAKC 148
Query: 266 GKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAF 305
GK+ + K + C Y + K +
Sbjct: 149 GKSLESTTLADKDGEIYCKGCYAKNFGP---KGFGFGQGA 185
Score = 28.4 bits (63), Expect = 3.2
Identities = 26/162 (16%), Positives = 45/162 (27%), Gaps = 15/162 (9%)
Query: 179 TCPQCGK-LYVSMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVC 237
C C K +Y + H C C K+ L G++ + CK C
Sbjct: 9 KCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKN------LDSTTVAVHGDEIY-CKSC 61
Query: 238 DKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFK 297
+ + E G + ++ + S+
Sbjct: 62 YGKK-YGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDG--- 117
Query: 298 CKVCDKAFADKSNLRAHIQT-HSKVKPFVCEKCGKAFALKSY 338
C C +A + ++ H F C KCGK+ +
Sbjct: 118 CPRCGQAVYAAEKVIGAGKSWHKSC--FRCAKCGKSLESTTL 157
Score = 28.4 bits (63), Expect = 3.3
Identities = 21/114 (18%), Positives = 32/114 (28%), Gaps = 7/114 (6%)
Query: 297 KCKVCDKAFADKSNLRAHIQT-HSKVKPFVCEKCGKAFALKSYLYKHEDSSC----LKSY 351
KC VC KA ++ + H F+C C K + ++ C K Y
Sbjct: 9 KCGVCQKAVYFAEEVQCEGSSFHKSC--FLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKY 66
Query: 352 DSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGK 405
G T+S + R + S K C +
Sbjct: 67 GPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPR 120
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 27.8 bits (61), Expect = 0.73
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 289 SSSSEKPFKCKVCDKAFADK-SNLRAHIQTHSKVK 322
S SS + KC CD F S+L+ HI H VK
Sbjct: 3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
Score = 25.9 bits (56), Expect = 3.2
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 227 TGEKPFKCKVCDKAFADK-SNLRAHIQTHSKVK 258
+ + KC CD F S+L+ HI H VK
Sbjct: 5 SSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK 37
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.1 bits (64), Expect = 0.81
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 206 CPHCSKSFSRPWL-LQGHIRT-HTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKP 259
CP C+ + + L+ H+ + KC+ C K F K+ L H KP
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 28.4 bits (62), Expect = 1.8
Identities = 17/69 (24%), Positives = 20/69 (28%), Gaps = 6/69 (8%)
Query: 255 SKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAH 314
+ VC C K C K D KC+ C K F K+ L H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQD------ALKCQHCRKQFKSKAGLNYH 73
Query: 315 IQTHSKVKP 323
KP
Sbjct: 74 TMAEHSAKP 82
Score = 27.2 bits (59), Expect = 4.0
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 167 QIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQ-------CPHCSKSFSRPWLL 219
Q R+ + CP C + + L+ H ++CQ C HC K F L
Sbjct: 14 QWQRAIHERGEAVCPTCNVVTRKT---LVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGL 70
Query: 220 QGHIRTHTGEKP 231
H KP
Sbjct: 71 NYHTMAEHSAKP 82
Score = 26.1 bits (56), Expect = 9.5
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 287 YDSSSSEKPFKCKVCDKAFADK-SNLRAHIQT-HSKVKPFVCEKCGKAFALKSYLYKH 342
+ C C+ L+ H++ C+ C K F K+ L H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH 73
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.2 bits (59), Expect = 1.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 136 TSTANNNNNESFQCRDCGKHYSTSSNLARHRQIH 169
+S ++ + +C++CGK + SS L H+ +H
Sbjct: 2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALH 35
Score = 26.4 bits (57), Expect = 2.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIH 389
+ +C++CGK + SS L H+ +H
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALH 35
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 30.0 bits (67), Expect = 1.7
Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 13/104 (12%)
Query: 163 ARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGH 222
A + +L VS+ L + C +C FS L+ H
Sbjct: 335 ALPEDYKAQALAAFHHSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFS--LTLRRH 392
Query: 223 IRTHTGEKPFKCKVCDKAFADK-SNLRAHIQTHSKVKPFVCEKC 265
C C K S + ++ VC+ C
Sbjct: 393 ----------HCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGC 426
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 29.6 bits (67), Expect = 1.7
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 149 CRDCGKHYSTSSNLAR--HRQIHRSPDDTKARTCPQCG 184
C C Y + + + R KAR C
Sbjct: 141 CAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
Score = 29.6 bits (67), Expect = 1.7
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 369 CRDCGKHYSTSSNLAR--HRQIHRSPDDTKARTCPQCG 404
C C Y + + + R KAR C
Sbjct: 141 CAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 27.5 bits (60), Expect = 1.7
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 232 FKCKVCDKAFADKSNLRAHIQTH 254
C +C K F D + LR H H
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQH 36
Score = 27.5 bits (60), Expect = 1.7
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 296 FKCKVCDKAFADKSNLRAHIQTH 318
C +C K F D + LR H H
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQH 36
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 26.2 bits (57), Expect = 1.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 258 KPFVCEKCGKAFALKSYLYKH 278
KP+VCE+CGK F S L H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
Score = 26.2 bits (57), Expect = 1.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 322 KPFVCEKCGKAFALKSYLYKH 342
KP+VCE+CGK F S L H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 29.7 bits (67), Expect = 1.9
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 149 CRDCGKHYSTSSNLAR--HRQIHRSPDDTKARTCPQCG 184
C C Y + + + R KAR C
Sbjct: 141 CAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
Score = 29.7 bits (67), Expect = 1.9
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 369 CRDCGKHYSTSSNLAR--HRQIHRSPDDTKARTCPQCG 404
C C Y + + + R KAR C
Sbjct: 141 CAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACR 178
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 26.3 bits (57), Expect = 2.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 257 VKPFVCEKCGKAFALKSYLYKH 278
++P+ C CGK F+LK + H
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETH 22
Score = 26.3 bits (57), Expect = 2.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 321 VKPFVCEKCGKAFALKSYLYKH 342
++P+ C CGK F+LK + H
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETH 22
Score = 25.1 bits (54), Expect = 5.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQTHS 255
+P+ C VC K F+ K + H + H+
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
Score = 25.1 bits (54), Expect = 5.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHS 319
+P+ C VC K F+ K + H + H+
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.4 bits (57), Expect = 2.0
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 289 SSSSEKPFKCKVCDKAFADKSNLRAHIQTH 318
S SS + + C VC+K+F++ +++HI+T+
Sbjct: 3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTN 32
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair,
N1-methyladenine, N3-methylcytosine, hyperthermophiles,
hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus}
PDB: 2jhj_A
Length = 295
Score = 29.4 bits (66), Expect = 2.1
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 11/64 (17%)
Query: 13 RLDEGDKLVSVHINTDPDNSHIPDVSHLPANSHLPGVSDYASDSSDLDDDDD-------D 65
LD V + P++ V N V + L + ++ D
Sbjct: 40 VLDGRAVAVMAY----PESERTIVVEGNFENREWEAVRRKLVEYLGLQNPEELYRFMDGD 95
Query: 66 PRLQ 69
+L+
Sbjct: 96 EKLR 99
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE]
hydrogenase maturation, zinc-finger, nickel binding,
metal-binding; HET: FME; 2.30A {Pyrococcus
kodakaraensis} PDB: 3a44_A*
Length = 139
Score = 28.5 bits (63), Expect = 2.6
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 149 CRDCGKHYSTSSNLARHRQIHRSPDDTKAR------TCPQCG 184
CR+C + + + + CP+CG
Sbjct: 73 CRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCG 114
Score = 28.5 bits (63), Expect = 2.6
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 369 CRDCGKHYSTSSNLARHRQIHRSPDDTKAR------TCPQCG 404
CR+C + + + + CP+CG
Sbjct: 73 CRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCG 114
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 25.9 bits (56), Expect = 2.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTH 254
EKPF C +C + D S + H++TH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
Score = 25.9 bits (56), Expect = 2.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 293 EKPFKCKVCDKAFADKSNLRAHIQTH 318
EKPF C +C + D S + H++TH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 27.3 bits (60), Expect = 2.8
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 218 LLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYK 277
GH T + C+ CD + L+ H + + + +C CG+ +K L
Sbjct: 4 GSSGHEETECPLRLAVCQHCDLELS-ILKLKEH-EDYCGARTELCGNCGRNVLVK-DLKT 60
Query: 278 HEDSSCLKSYDSSSS 292
H + C + SS
Sbjct: 61 HPE-VCGREGSGPSS 74
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.1 bits (57), Expect = 2.8
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 229 EKPFKCKV--CDKAFADKSNLRAHIQTHSK 256
++P+ C CDKAF +L H ++H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 26.1 bits (57), Expect = 2.8
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 293 EKPFKCKV--CDKAFADKSNLRAHIQTHSK 320
++P+ C CDKAF +L H ++H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 26.0 bits (57), Expect = 2.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQT 253
K + C +C++AF + L H Q
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
Score = 26.0 bits (57), Expect = 2.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQT 317
K + C +C++AF + L H Q
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
Score = 25.6 bits (56), Expect = 3.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 258 KPFVCEKCGKAFALKSYLYKH 278
K + C C +AF + L +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRH 21
Score = 25.6 bits (56), Expect = 3.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 322 KPFVCEKCGKAFALKSYLYKH 342
K + C C +AF + L +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRH 21
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 26.0 bits (56), Expect = 3.0
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 230 KPFKCKVCDKAFADKSNLRAHIQT-HSKVK 258
K ++C+ C+ AD SNL+ HI+T HSK K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
Score = 26.0 bits (56), Expect = 3.0
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQT-HSKVK 322
K ++C+ C+ AD SNL+ HI+T HSK K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel,
extradiol dioxygenase, metalloen trytophan catabolism,
NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB:
3fe5_A
Length = 286
Score = 28.8 bits (64), Expect = 3.2
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 145 ESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAYSMHLRT 199
+ F C+D G + I + RT + P + + R+
Sbjct: 130 KWFYCKDLGTQLA--------PIIQEFFSSEQYRTGKPIPDQLLKEPPFPLSTRS 176
Score = 28.0 bits (62), Expect = 6.2
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 393 DDTKARTCPQCGKLYVSMPAYSMHLRT 419
+ RT + P + + R+
Sbjct: 150 SSEQYRTGKPIPDQLLKEPPFPLSTRS 176
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A
{Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A*
1yfx_A* 1yfy_A*
Length = 174
Score = 28.4 bits (63), Expect = 3.5
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 8/48 (16%)
Query: 145 ESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPA 192
Q + L R CP CG+++ A
Sbjct: 135 VEVQLKSIVTD------LPPL--FESFYASEDKRRCPHCGQVHPGRAA 174
Score = 27.2 bits (60), Expect = 8.2
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 8/47 (17%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPA 412
Q + L R CP CG+++ A
Sbjct: 136 EVQLKSIVTD------LPPL--FESFYASEDKRRCPHCGQVHPGRAA 174
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 25.9 bits (57), Expect = 3.8
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 146 SFQCRDCGKHYSTSSNLARHRQIHR 170
S+ C C + + ++ L H +HR
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVHR 30
Score = 25.9 bits (57), Expect = 3.8
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 366 SFQCRDCGKHYSTSSNLARHRQIHR 390
S+ C C + + ++ L H +HR
Sbjct: 6 SYTCSFCKREFRSAQALGGHMNVHR 30
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel,
oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP:
b.82.1.20
Length = 176
Score = 28.0 bits (62), Expect = 4.1
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 8/47 (17%)
Query: 145 ESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMP 191
Q D G + I +D + RTC C L + P
Sbjct: 137 SELQMLDLGTQ------VKEA--ILDFENDVEKRTCFHCKTLNYARP 175
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 28.4 bits (62), Expect = 4.8
Identities = 23/191 (12%), Positives = 47/191 (24%), Gaps = 9/191 (4%)
Query: 21 VSVHINTDPDNSHIPDVSHLPANSHLPGVSDYASDSSDLDD--DDDDPRLQINEDEAEMS 78
V + I+T D + L +S Y +D ++ ++D E +
Sbjct: 68 VDLFISTQRIKVLNADTQETMMDHALRTIS-YIADIGNIVVLMARRRMPRSASQDCIETT 126
Query: 79 DPVSTSSQSSSEPVASFDPAYDHLYNLTQLAEVSLAYFNQSNSFNRKSVICNTKDVDTST 138
+ F+ L + S+AY + + K+
Sbjct: 127 PGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDII 186
Query: 139 ANNNNNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYV------SMPA 192
L +H+ ++ + + A
Sbjct: 187 NTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAA 246
Query: 193 YSMHLRTHNQI 203
S L +QI
Sbjct: 247 RSGKLSIGDQI 257
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor
suppressor, breast cancer susceptibility, DNA-binding;
3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3
b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Length = 738
Score = 28.7 bits (63), Expect = 4.9
Identities = 11/65 (16%), Positives = 23/65 (35%)
Query: 133 DVDTSTANNNNNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPA 192
+ ++ + + R K +S AR Q R + + Q G LY++ +
Sbjct: 1 NQKSTDGDREDGNDSHVRQFNKDLMSSLQSARDLQDMRIKNKERRHLRLQPGSLYLTKSS 60
Query: 193 YSMHL 197
+
Sbjct: 61 TLPRI 65
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 26.0 bits (56), Expect = 5.0
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 285 KSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFV 325
K S SE+P C +C NLR H++ KP V
Sbjct: 14 KPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV 54
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 28.7 bits (63), Expect = 5.0
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 288 DSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 328
S K C C + F S +H+ K +
Sbjct: 285 SLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRR 325
Score = 27.9 bits (61), Expect = 8.3
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 229 EKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEK 264
K C C + F S +H+ K +
Sbjct: 290 AKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRR 325
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate;
signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Length = 226
Score = 28.2 bits (62), Expect = 5.3
Identities = 16/143 (11%), Positives = 33/143 (23%), Gaps = 27/143 (18%)
Query: 294 KPFKCKVCDKAFADKSNLRAHIQTHSKVKPFVCEKCGKAFALKSYLYKHEDSSCLKSYDS 353
+ +V +K ++ Q V+ + ++
Sbjct: 78 QTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQA-----------------WAHAF 120
Query: 354 SSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSMPAY 413
+ + G + R+PD A C +C +
Sbjct: 121 RNEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRV------QF 174
Query: 414 SMHLRTHNQICQCPHCSKSFSRP 436
+ R H C C + F
Sbjct: 175 GVMTRKH----HCRACGQIFCGK 193
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 25.1 bits (54), Expect = 5.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 232 FKCKVCDKAFADKSNLRAHIQTHS 255
+KC +C+++F +KS L H + H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Score = 25.1 bits (54), Expect = 5.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 296 FKCKVCDKAFADKSNLRAHIQTHS 319
+KC +C+++F +KS L H + H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 25.1 bits (54), Expect = 5.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 205 QCPHCSKSFSRPWLLQGHIRT 225
CP C K F R L HI+T
Sbjct: 4 ACPACPKRFMRSDALSKHIKT 24
Score = 25.1 bits (54), Expect = 5.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 425 QCPHCSKSFSRPWLLQGHIRT 445
CP C K F R L HI+T
Sbjct: 4 ACPACPKRFMRSDALSKHIKT 24
Score = 24.7 bits (53), Expect = 9.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 146 SFQCRDCGKHYSTSSNLARH 165
+F C C K + S L++H
Sbjct: 2 AFACPACPKRFMRSDALSKH 21
Score = 24.7 bits (53), Expect = 9.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 366 SFQCRDCGKHYSTSSNLARH 385
+F C C K + S L++H
Sbjct: 2 AFACPACPKRFMRSDALSKH 21
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 28.5 bits (63), Expect = 6.2
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 10/115 (8%)
Query: 344 DSSCL---KSYDSSSNGHLNKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTC 400
D + L +S GH++KF + G+ + L H Q S
Sbjct: 125 DCTMLTPEPVLKTS--GHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVEKK 182
Query: 401 PQCGKLYVSMPAYS----MHLRTHNQICQCPHCSKSFSRPWLLQGHIRTHTGGTN 451
+ + + Y L + + P S P +T G
Sbjct: 183 SEMESVLAQLDNYGQQELADLFVNYNVK-SPITGNDLSPPVSFNLMFKTFIGPGG 236
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex,
phosphoesterase fold, OB fold, zinc-binding motif, DNA
replication; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Length = 206
Score = 27.7 bits (61), Expect = 7.1
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 179 TCPQCGKLYVSMPAY-SMHLRTHNQICQCPHCSKSFSRPWL---LQGHIRTHTGEKPFKC 234
+CP C K + S + R QC HC + F+ L ++ IR H
Sbjct: 24 SCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGW 83
Query: 235 KVCD 238
CD
Sbjct: 84 LQCD 87
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 27.6 bits (61), Expect = 7.2
Identities = 28/140 (20%), Positives = 42/140 (30%), Gaps = 7/140 (5%)
Query: 207 PHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCDKAFADKSNLRAHIQT-HSKVKPFVCEKC 265
+ GH+ + + C CD+ D+ L+A + HSK C C
Sbjct: 36 FDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKC--LKCSDC 93
Query: 266 GKAFALKSYLYKHEDSSCLKSYDSSSSEKPFKCKVCDKAFADKSNLRAHIQTHSKVKPFV 325
A + + E C + K C C +R + F
Sbjct: 94 HVPLA-ERCFSRGESVYCKDDFFKRFGTK---CAACQLGIPPTQVVRRAQDFVYHLHCFA 149
Query: 326 CEKCGKAFALKSYLYKHEDS 345
C C + A Y EDS
Sbjct: 150 CVVCKRQLATGDEFYLMEDS 169
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA;
metallochaperone, metal-binding, metal- binding protein;
NMR {Helicobacter pylori}
Length = 119
Score = 26.7 bits (59), Expect = 7.3
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 14/36 (38%)
Query: 149 CRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG 184
C+DC + P+ C +C
Sbjct: 76 CKDCSHVFK--------------PNALDYGVCEKCH 97
Score = 26.7 bits (59), Expect = 7.3
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 14/36 (38%)
Query: 369 CRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCG 404
C+DC + P+ C +C
Sbjct: 76 CKDCSHVFK--------------PNALDYGVCEKCH 97
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.9 bits (63), Expect = 7.6
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 166 RQI---HRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPH 208
RQ+ H+ P A C C + V P + T + C P
Sbjct: 404 RQLWWGHQIP----AWYCEDCQAVNVPRPERYLEDPTSCEACGSPR 445
Score = 27.9 bits (63), Expect = 7.6
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 386 RQI---HRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPH 428
RQ+ H+ P A C C + V P + T + C P
Sbjct: 404 RQLWWGHQIP----AWYCEDCQAVNVPRPERYLEDPTSCEACGSPR 445
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 27.0 bits (59), Expect = 8.7
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 14/97 (14%)
Query: 143 NNESFQCRDCGKHYSTSSNLARHRQIHRSPDDTKARTCPQCGKLYVSM-PAYSMHLRTHN 201
E+F+ + Y+ ++ ++ R+ + A
Sbjct: 77 EGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEKGEDIEIK 136
Query: 202 QICQCPHCSKSFSRPWLLQGHIRTHTGEKPFKCKVCD 238
++ CP C G+ E P C VC
Sbjct: 137 KVYICPIC-----------GYT--AVDEAPEYCPVCG 160
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 27.2 bits (59), Expect = 9.5
Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 11/112 (9%)
Query: 168 IHRSPDDTKARTCPQCGKLYVSMPAYSMHLRTHNQICQCPHCSKSFSRPWLLQGHIRTHT 227
I+R+ + C C L + + P C + ++
Sbjct: 66 IYRTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKK 125
Query: 228 GEK--------PFKCKVCDKAFADKSNLRA---HIQTHSKVKPFVCEKCGKA 268
F C +C+K H + ++C+ C
Sbjct: 126 KMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWICDSCNTG 177
>1tfi_A Transcriptional elongation factor SII; transcription regulation;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 50
Score = 25.1 bits (55), Expect = 9.8
Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 7/48 (14%)
Query: 360 NKFTTISFQCRDCGKHYSTSSNLARHRQIHRSPDD--TKARTCPQCGK 405
T F C C K T Q RS D+ T C +CG
Sbjct: 3 GGTQTDLFTCGKCKKKNCTY----TQVQT-RSADEPMTTFVVCNECGN 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.128 0.400
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,425,604
Number of extensions: 355445
Number of successful extensions: 3786
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2923
Number of HSP's successfully gapped: 1429
Length of query: 451
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 354
Effective length of database: 3,993,456
Effective search space: 1413683424
Effective search space used: 1413683424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.1 bits)