BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy18079
         (178 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
           Protein From Bacteroides Thetaiotaomicron
          Length = 1000

 Score = 27.3 bits (59), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 18/109 (16%)

Query: 23  EFQCFNE---HASLTDEDRIVLPRSHTQAMWTQARCDAYSFESVRCTFEVTSGVWYYETK 79
           +F   NE   H  +T +D  VL   + +       C+ ++      T E+T G       
Sbjct: 635 DFSDLNEYILHWKVTGDDGTVLAEGNKEVA-----CEPHA------TVELTLGAVQLPKT 683

Query: 80  IRSAGVMQIGWATKKSKFLNHEGYGIGDDEYSVAYDGCRQLIWHDAKSE 128
           IR A  + +GW  KKS  L    + I  D++ +   G    +W+   SE
Sbjct: 684 IREA-YLDLGWTRKKSTPLVDTAWEIAYDQFVLPASG---KVWNGKPSE 728


>pdb|3TOJ|A Chain A, Structure Of The Spry Domain Of Human Ash2l
 pdb|3TOJ|B Chain B, Structure Of The Spry Domain Of Human Ash2l
          Length = 213

 Score = 26.6 bits (57), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 17/111 (15%)

Query: 60  FESVRCTFEVTSGVWYYETKIRSA---GVMQIGWATKKSKFLNHEGYGIGDDEYSVAYDG 116
           +  VR +  V  G WY+E  +         ++GW+          GY    D++S ++  
Sbjct: 39  YSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGY----DKFSYSWRS 94

Query: 117 CRQLIWHDAKSEDPPNEGMWHPGDILGCLLDVE--------ARESVFYLNG 159
            +   +H +  +       +  GD+LG  +++         + E +FY NG
Sbjct: 95  KKGTKFHQSIGKH--YSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNG 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,877,008
Number of Sequences: 62578
Number of extensions: 237390
Number of successful extensions: 371
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 3
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)