RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18079
(178 letters)
>gnl|CDD|240463 cd12883, SPRY_RING, SPRY domain at N-terminus of Really Interesting
New Gene (RING) finger domain. This SPRY domain is
found at the N-terminus of RING finger domains which are
present in a variety of functionally distinct proteins
and known to be involved in protein-protein and
protein-DNA interactions. RING-finger domain is a type
of Zn-finger that binds two Zn atoms and is identified
in proteins with a wide range of functions such as viral
replication, signal transduction, and development.
Length = 121
Score = 160 bits (407), Expect = 2e-51
Identities = 59/99 (59%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Query: 72 GVWYYETKIRSAGVMQIGWATKKSKFLNHEGYGIGDDEYSVAYDGCRQLIWHDAKSEDPP 131
GVWYYE + ++GVMQIGWATK SKFLNHEGYGIGDDEYS AYDGCRQLIW++A+S
Sbjct: 1 GVWYYEVTVLTSGVMQIGWATKDSKFLNHEGYGIGDDEYSFAYDGCRQLIWYNAESRPHT 60
Query: 132 NEGMWHPGDILGCLLDVEARESVFYLNGRVVAVTSHLFN 170
+ W PGD++GCLLD++ ++ +F LNG + F
Sbjct: 61 HP-RWKPGDVVGCLLDLDKKQMIFSLNGNRLPPERLPFT 98
Score = 33.1 bits (76), Expect = 0.028
Identities = 10/11 (90%), Positives = 10/11 (90%)
Query: 1 MSFQQCRFNFG 11
MSFQQC FNFG
Sbjct: 111 MSFQQCEFNFG 121
>gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger
protein 123. This SPRY domain is found at the
N-terminus of RING finger protein 123 domain (also known
as E3 ubiquitin-protein ligase RNF123). The ring finger
domain motif is present in a variety of functionally
distinct proteins and known to be involved in
protein-protein and protein-DNA interactions. RNF123
displays E3 ubiquitin ligase activity toward the
cyclin-dependent kinase inhibitor p27 (Kip1).
Length = 128
Score = 93.9 bits (234), Expect = 3e-25
Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 62 SVRCTFEVTSGVWYYETKIRSAGVMQIGWATKKSKFLNHEGYGIGDDEYSVAYDGCRQLI 121
S+R V G W YE + + G+MQIGWAT +F E G+GD S AYDG R
Sbjct: 1 SIRANACVYKGKWMYEVTLGTKGIMQIGWATISCRFTQEE--GVGDTPDSYAYDGNRVRK 58
Query: 122 WH-DAKSEDPPNEGMWHPGDILGCLLDVEARESVFYLNGR 160
W+ + P W GD++GC +D++ FY NGR
Sbjct: 59 WNVSTQKYGEP----WVAGDVIGCCIDLDEGTISFYRNGR 94
>gnl|CDD|240451 cd11709, SPRY, SPRY domain. SPRY domains, first identified in the
SP1A kinase of Dictyostelium and rabbit Ryanodine
receptor (hence the name), are homologous to B30.2. SPRY
domains have been identified in at least 11 protein
families, covering a wide range of functions, including
regulation of cytokine signaling (SOCS), RNA metabolism
(DDX1 and hnRNP), immunity to retroviruses (TRIM5alpha),
intracellular calcium release (ryanodine receptors or
RyR) and regulatory and developmental processes (HERC1
and Ash2L). B30.2 also contains residues in the
N-terminus that form a distinct PRY domain structure;
i.e. B30.2 domain consists of PRY and SPRY subdomains.
B30.2 domains comprise the C-terminus of three protein
families: BTNs (receptor glycoproteins of immunoglobulin
superfamily); several TRIM proteins (composed of
RING/B-box/coiled-coil or RBCC core); Stonutoxin
(secreted poisonous protein of the stonefish Synanceia
horrida). While SPRY domains are evolutionarily ancient,
B30.2 domains are a more recent adaptation where the
SPRY/PRY combination is a possible component of immune
defense. Mutations found in the SPRY-containing proteins
have shown to cause Mediterranean fever and Opitz
syndrome.
Length = 118
Score = 85.5 bits (212), Expect = 4e-22
Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 72 GVWYYETKIRSA--GVMQIGWATKKSKFLNHEGYGIGDDEYSVAYDGCRQLIWHDAKSED 129
G WYYE ++ S G++Q+GWATK G G DDE S +DG R H
Sbjct: 1 GKWYYEVRVDSGNGGLIQVGWATKSFSLDGERGVG--DDEGSWGFDGSRLRKGH--GGSS 56
Query: 130 PPNEGMWHPGDILGCLLDVEARESVFYLNGRVVAVTSHLFN 170
P W GD++GCLLD++A F LNG + V
Sbjct: 57 EPGGRPWKSGDVVGCLLDLDAGTLSFSLNGVDLGVAFENLF 97
>gnl|CDD|240458 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryanodine receptor
(RyR). This SPRY domain (SPRY2) is the second of three
structural repeats in all three isoforms of the
ryanodine receptor (RyR), which are the major Ca2+
release channels in the membranes of sarcoplasmic
reticulum (SR). There are three RyR genes in mammals;
the skeletal RyR1, the cardiac RyR2 and the brain RyR3.
The three SPRY domains are located in the N-terminal
part of the cytoplasmic region of the RyRs, The SPRY2
domain has been shown to bind to the dihydropryidine
receptor (DHPR) II-III loop and the ASI region of RyR1.
Length = 133
Score = 80.4 bits (199), Expect = 7e-20
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 66 TFEVTSGVWYYETKIRSAGVMQIGWATKKSKFLNHEGYGIGDDEYSVAYDGCRQLIWHDA 125
T+ VTSG WY+E ++ ++G M++GWA +G D+ S A+DG WH
Sbjct: 8 TYAVTSGKWYFEFEVLTSGYMRVGWARPGF----RPDLELGSDDLSYAFDGFLARKWHQG 63
Query: 126 KSEDPPNEGMWHPGDILGCLLDVEARESVFYLNG 159
W PGD++GC+LD+ R F LNG
Sbjct: 64 SESFGKQ---WQPGDVVGCMLDLVDRTISFTLNG 94
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor.
Domain of unknown function. Distant homologues are
domains in butyrophilin/marenostrin/pyrin homologues.
Length = 122
Score = 71.6 bits (176), Expect = 1e-16
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 71 SGVWYYETKIRSAGVMQIGWATKKSKFLNHEGYGIGDDEYSVAYDGCRQLIWHDAKSEDP 130
SG Y+E +I G ++G ATK +G+D+ S YDG +H++ +
Sbjct: 1 SGRHYFEVEIGDGGHWRVGVATKSVPR--GYFALLGEDKGSWGYDGDGGKKYHNSTGPEY 58
Query: 131 PNEGMWH-PGDILGCLLDVEARESVFYLNG 159
PGD++GC LD+EA FY NG
Sbjct: 59 GLP--LQEPGDVIGCFLDLEAGTISFYKNG 86
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain. SPRY Domain is named from SPla and
the RYanodine Receptor. Domain of unknown function.
Distant homologues are domains in
butyrophilin/marenostrin/pyrin homologues.
Length = 125
Score = 68.6 bits (168), Expect = 2e-15
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 71 SGVWYYETKIRSAG--VMQIGWATKKSKFLNHEGYGIGDDEYSVAYDGCRQLIWHDAKSE 128
SG Y+E ++ + G +++GWATK K +GDDE S YDG +H+ +SE
Sbjct: 1 SGKHYFEVEVDTGGGGHVRVGWATKSVKK--PGFRLLGDDEGSWGYDGSGGSKYHNGESE 58
Query: 129 DPPNEGMWHPGDILGCLLDVEARESVFYLNGR 160
+ GD++GC LD+E E F NG+
Sbjct: 59 PYGL--KFQEGDVIGCFLDLEEGEISFTKNGK 88
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2. This SPRY domain is found
at the C-terminus of Ash2 (absent, small, or homeotic
discs 2) -like proteins, core components of all
mixed-lineage leukemia (MLL) family histone
methyltransferases. Ash2 is a member of the trithorax
group of transcriptional regulators of the Hox genes.
Recent studies show that the SPRY domain of Ash2
mediates the interaction with RbBP5 and has an important
role in regulating the methyltransferase activity of MLL
complexes. In yeast, Ash2 is involved in histone
methylation and is required for the earliest stages of
embryogenesis.
Length = 149
Score = 55.2 bits (134), Expect = 3e-10
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 62 SVRCTFEVTSGVWYYETKIRSAGVMQ----IGWATKKSKFLNHEGYGIGDDEYSVAY--- 114
R V G WY+E KI G +GW+ +++ +G D+YS AY
Sbjct: 18 MARANHGVREGKWYFEVKILEGGGETGHVRVGWSRREASL----QAPVGYDKYSYAYRDK 73
Query: 115 DGCRQLIWHDAKSEDPPNEGMWHPGDILGCLLDVEARESVFYLNG 159
DG +H ++ + G GD++GCL+ + E F+ NG
Sbjct: 74 DGE---KFHLSRGKPYGEPGF-KEGDVIGCLITLPKIE--FFKNG 112
>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1.
This SPRY domain is associated with the DEAD box gene,
DDX1, an RNA-dependent ATPase involved in HIV-1 Rev
function and virus replication. It is suggested that
DDX1 acts as a cellular cofactor by promoting
oligomerization of Rev on the Rev response element
(RRE). DDX1 RNA is overexpressed in breast cancer, data
showing a strong and independent association between
poor prognosis and deregulation of the DEAD box protein
DDX1, thus potentially serving as an effective
prognostic biomarker for early recurrence in primary
breast cancer. DDX1 also interacts with RelA and
enhances nuclear factor kappaB-mediated transcription.
DEAD-box proteins are associated with all levels of RNA
metabolism and function, and have been implicated in
translation initiation, transcription, RNA splicing,
ribosome assembly, RNA transport, and RNA decay.
Length = 155
Score = 51.0 bits (123), Expect = 1e-08
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 51 TQARCDAYSFESVRCTFEVT-SGVWYYETKIRSAGVMQIGWATKKSKFLNHEGYGIGDDE 109
Q+R + ++ R T V G +YYE + G+ ++GW+T+ + +G D+
Sbjct: 19 CQSR-EEKGWQGCRATKGVKGKGKYYYEVTVTDEGLCRVGWSTEDAS------LDLGTDK 71
Query: 110 YSVAYDGCRQLIWHDAKSEDPPNEGM-WHPGDILGCLLDVEARESVFYLNGR 160
+ Y G + + ED G + GD++GCLLD++ F NG+
Sbjct: 72 FGFGYGGTGKKSHGR-QFED---YGEPFGKGDVIGCLLDLDNGTISFSKNGK 119
>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of heterogeneous nuclear
ribonucleoprotein U-like (hnRNP) protein 1 (also known
as HNRPUL1 ) which is a major constituent of nuclear
matrix or scaffold and binds directly to DNA sequences
through the N-terminal acidic region named serum amyloid
P (SAP). Its function is specifically modulated by
E1B-55kDa in adenovirus-infected cells. HNRPUL1 also
participates in ATR protein kinase signaling pathways
during adenovirus infection. Two transcript variants
encoding different isoforms have been found for this
gene. When associated with bromodomain-containing
protein 7 (BRD7), it activates transcription of
glucocorticoid-responsive promoter in the absence of
ligand-stimulation.
Length = 176
Score = 49.5 bits (119), Expect = 6e-08
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 30/122 (24%)
Query: 57 AYSFESVRCTFEVTSGVWYYETKIRS-------------AGVMQIGWATKKSKFLNHEGY 103
AY + R T+ V G +E K+ V+++GW+ S
Sbjct: 30 AYLWAGARATYGVRKGKVCFEVKVLENLPVKHLPTEETDPHVVRVGWSVDSSSLQ----- 84
Query: 104 GIGDDEYSVAYDGCRQLIWHDAKSED---PPNEGMWHPGDILGCLLDVEARESV--FYLN 158
+G+++ S Y + K ED P + GD++GC LD+E+ F N
Sbjct: 85 -LGEEKLSYGYGS-TGKKSTNGKFEDYGEP-----FGEGDVIGCYLDLESEPVEISFTKN 137
Query: 159 GR 160
G+
Sbjct: 138 GK 139
>gnl|CDD|240457 cd12877, SPRY1_RyR, SPRY domain 1 (SPRY1) of ryanodine receptor
(RyR). This SPRY domain is the first of three
structural repeats in all three isoforms of the
ryanodine receptor (RyR), which are the major Ca2+
release channels in the membranes of sarcoplasmic
reticulum (SR). There are three RyR genes in mammals;
the skeletal RyR1, the cardiac RyR2 and the brain RyR3.
The three SPRY domains are located in the N-terminal
part of the cytoplasmic region of the RyRs, but no
specific function has been found for this first SPRY
domain of the RyRs.
Length = 151
Score = 48.1 bits (115), Expect = 2e-07
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 74 WYYETKIRSAGVM-------QIGWATKKSKFLNHEGYG-------IGDDEYSVAYDGCRQ 119
WY+E ++ ++GWA S ++ + G G +GDD YS +DG
Sbjct: 20 WYFEVEVDHVEQFTHQPAHLRVGWANT-SGYVPYPGGGEGWGGNGVGDDLYSYGFDGLH- 77
Query: 120 LIWHDAKSE--DPPNEGMWHPGDILGCLLDVEARESVFYLNGRVVAVTSHLFNVNLP 174
+W +S + + GD++GC LD+ F +NGR V N NL
Sbjct: 78 -LWTGGRSRRVTSGTQHLLKKGDVVGCCLDLSVPSISFRVNGRPVQ--GMFENFNLD 131
>gnl|CDD|240460 cd12880, SPRYD7, SPRY domain-containing protein 7. This family
contains SPRY domain-containing protein 7 (also known as
SPRY domain-containing protein 7 or CLL deletion region
gene 6 protein homolog or CLLD6 or chronic lymphocytic
leukemia deletion region gene 6 protein homolog). In
humans, CLLD6 is highly expressed in heart, skeletal
muscle, and testis as well as cancer cell lines. It also
has cross-species conservation, suggesting that it is
likely to carry out important cellular processes.
Length = 160
Score = 41.1 bits (97), Expect = 5e-05
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 75 YYETKIRSAGVMQIGWATKKSKFLNHEGYGIGDDEYSVAYDGCRQLIWHD----AKSEDP 130
Y+E K++ G +G AT+K LN G + + + DG IWH+ AK +
Sbjct: 32 YFEVKVQQTGSWGVGVATEKCD-LNRVPLGNDSESWVLRSDGT---IWHNGEVIAKLKQN 87
Query: 131 PNEGMWHPGDILGCLLD-VEARESVFYLNG 159
E GD++G D VE FYLNG
Sbjct: 88 VEE-----GDVIGVTYDHVELN---FYLNG 109
>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins,
SSH4, HECT E3 and SPRYD3. This family includes SPRY
domains found in Ran binding proteins (RBP or RanBPM) 9
and 10, SSH4 (suppressor of SHR3 null mutation protein
4), SPRY domain-containing protein 3 (SPRYD3) as well as
HECT, a C-terminal catalytic domain of a subclass of
ubiquitin-protein ligase (E3). RanBP9 and RanBP10 act as
androgen receptor (AR) coactivators. Both consist of the
N-terminal proline- and glutamine-rich regions, the SPRY
domain, and LisH-CTLH and CRA motifs. The SPRY domain in
SSH4 may be involved in cargo recognition, either
directly or by combination with other adaptors, possibly
leading to a higher selectivity. SPRYD3 is highly
expressed in most tissues in humans, possibly involved
in important cellular processes. HECT E3 mediates the
direct transfer of ubiquitin from E2 to substrate.
Length = 132
Score = 38.4 bits (90), Expect = 4e-04
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 20/111 (18%)
Query: 69 VTSGVWYYETKIRSAGV---MQIGWATKKSKFLNHEGYGIGDDEYSVAY---DGCRQLIW 122
V+Y+E I G + IG+ T G ++ S Y DG ++
Sbjct: 11 PKVPVFYFEVTILDLGEKGIVSIGFCTSGFPLNRM----PGWEDGSYGYHGDDG--RVYL 64
Query: 123 HDAKSE--DPPNEGMWHPGDILGCLLDVEARESVFY-LNGRVVAVTSHLFN 170
+ E PP + GD++GC ++ + E +F+ NG ++
Sbjct: 65 GGGEGENYGPP----FGTGDVVGCGINFKTGE-IFFTKNGELLGTAFENVV 110
>gnl|CDD|240482 cd12902, SPRY_PRY_RNF135, PRY/SPRY domain in RING finger protein
RNF135. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of the RING finger protein
RNF135 (also known as Riplet/RNF135), which
ubiquitinates RIG-I (retinoic acid-inducible gene-I) to
promote interferon-beta induction during the early phase
of viral infection. Normally, RIG-I is activated by
TRIM25 in response to viral infection, leading to
activation of the RIG-I signaling pathway, thus
resulting in type I interferon production to limit viral
replication. However, RNF135, consisting of an
N-terminal RING finger domain, C-terminal SPRY and PRY
motifs and showing sequence similarity to TRIM25, acts
as an alternative factor that promotes RIG-I activation
independent of TRIM25.
Length = 168
Score = 32.1 bits (73), Expect = 0.095
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 33 LTDEDRIVLPRSHTQAMWTQARCDAYSFESVRCTFEVTSGVWYYETKIRSAGVMQIG--- 89
++ R V H QA + +S V C+ +SG Y+E R++ +G
Sbjct: 14 VSPTSRRVTVSRHPQA--YAWSPERFSISQVMCSQGFSSGCHYWEVDTRNSSGWAVGVAS 71
Query: 90 WATKKSKFLNHEGYGIGDDEYSVAYDGCRQL-IWHDAKSEDPPNEGMWHPGDILGCLLDV 148
W + L D + + + G +QL WH K + P ++G LD+
Sbjct: 72 WEIGRRDKLGRTM-----DSWCIEWSGPKQLSAWHKNKKTFLGKD---KPS-VVGVFLDL 122
Query: 149 EARESVFY 156
E FY
Sbjct: 123 ENGTLSFY 130
>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria. This family
contains SPRY-like domains that are found only in
bacterial and are mostly uncharacterized. SPRY domains,
first identified in the SP1A kinase of Dictyostelium and
rabbit Ryanodine receptor (hence the name), are
homologous to B30.2. SPRY domains have been identified
in at least 11 eukaryotic protein families, covering a
wide range of functions, including regulation of
cytokine signaling (SOCS), RNA metabolism (DDX1 and
hnRNP), immunity to retroviruses (TRIM5alpha),
intracellular calcium release (ryanodine receptors or
RyR) and regulatory and developmental processes (HERC1
and Ash2L).
Length = 128
Score = 30.9 bits (70), Expect = 0.14
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 72 GVWYYETKIRSAGV---MQIGWATKKSKFLNHEGYGIGDDEYSVA-YDGCRQLIWHDAKS 127
G WY+E + S+ IG A N G + YS+ G + S
Sbjct: 1 GKWYWEVTVVSSTSSSAAGIGVAPAAVTLNNGLGIELSSYGYSLGVSSG----NTYSGGS 56
Query: 128 EDPPNEGMWHPGDILGCLLDVEARESVFYLNG 159
+ GD++G LD++A + FY NG
Sbjct: 57 TVASFGAGFTAGDVIGVALDLDAGKIWFYKNG 88
>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and
10. This family includes SPRY domain in Ran binding
protein (RBP or RanBPM) 9 and 10, and similar proteins.
RanBP9 (also known as RanBPM), a binding partner of Ran,
is a small Ras-like GTPase that exerts multiple
functions via interactions with various proteins. RanBP9
and RanBP10 also act as androgen receptor (AR)
coactivators. Both consist of the N-terminal proline-
and glutamine-rich regions, the SPRY domain, and
LisH-CTLH and CRA motifs. SPRY domain of RanBPM forms a
complex with CD39, a prototypic member of the NTPDase
family, thus down-regulating activity substantially.
RanBP10 enhances the transcriptional activity of AR in a
ligand-dependent manner and exhibits a protein
expression pattern different from RanBPM in various cell
lines. RanBP10 is highly expressed in AR-positive
prostate cancer LNCaP cells, while RanBPM is abundant in
WI-38 and MCF-7 cells.
Length = 153
Score = 29.4 bits (67), Expect = 0.58
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 62 SVRCTFEV--TSGVWYYETKIRSAGV---MQIGWATKKSKFLNHEGYGIGDDEYSVAY-- 114
+VR + G++Y+E KI S G + IG +TK G+ +++S Y
Sbjct: 22 AVRANHPIPPQCGIYYFEVKILSKGRDGYIGIGLSTKGVNLNRLPGW----EKHSWGYHG 77
Query: 115 -DGCRQLIWHDAKSEDP--PNEGMWHPGDILGCLLDVEARESVFYLNGRVVAV-TSHLFN 170
DG + + + P P GD++GC ++ + NG + L +
Sbjct: 78 DDGH---SFSSSGTGKPYGPTFTT---GDVIGCGINFVDNTIFYTKNGVNLGTAFRDLPD 131
Query: 171 VNLPP 175
NL P
Sbjct: 132 KNLYP 136
>gnl|CDD|240455 cd12875, SPRY_SOCS_Fbox, SPRY domain in Fbxo45 and suppressors of
cytokine signaling (SOCS) proteins. This family
consists of the SPRY domain-containing SOCS box protein
family (SPSB1-4, also known as SSB-1 to -4) as well as
F-box protein 45 (Fbxo45), a novel synaptic E3 and
ubiquitin ligase. The SPSB protein is composed of a
central SPRY protein interaction domain and a C-terminal
SOCS box. SPSB1, SPSB2, and SPSB4 interact with prostate
apoptosis response protein 4 (Par-4) and are negative
regulators that recruit the ECS E3 ubiquitin ligase
complex to polyubiquitinate inducible nitric-oxide
synthase (iNOS), resulting in its proteasomal
degradation. Fbxo45 is related to this family; it is
located N-terminal to the SPRY domain, and known to
induce the degradation of a synaptic vesicle-priming
factor, Munc13-1, via the SPRY domain, thus playing an
important role in the regulation of neurotransmission by
modulating Munc13-1 at the synapse. Suppressor of
cytokine signaling (SOCS) proteins negatively regulate
signaling from JAK-associated cytokine receptor
complexes, and play key roles in the regulation of
immune homeostasis.
Length = 171
Score = 28.5 bits (64), Expect = 1.2
Identities = 32/136 (23%), Positives = 48/136 (35%), Gaps = 15/136 (11%)
Query: 36 EDRIVLPRSHTQAMWTQARCDAYSFESVRCTFEVTSGVWYYETKIRSAGVMQIGWATKKS 95
ED + R A T A + +EV + + S V +G ATK +
Sbjct: 16 EDGLTFHRRPV-AQSTDAIRGKIGYSRGLHAWEV----KWEGRQRGSHAV--VGVATKDA 68
Query: 96 KFLNHEGYG--IGDDEYSVAYDGCRQLIWHDAKSEDPPNEGMWHPG-----DILGCLLDV 148
L +GY +G D S +D ++HD K D + +LD+
Sbjct: 69 P-LQCDGYVALLGSDSESWGWDLSTNKLYHDGKVVIGSYPAGSATENYSVPDRVLVILDM 127
Query: 149 EARESVFYLNGRVVAV 164
E F NG + V
Sbjct: 128 EDGTLAFEANGEYLGV 143
>gnl|CDD|212787 cd11853, SH3_Kalirin_2, Second Src homology 3 domain of the RhoGEF
kinase, Kalirin. Kalirin, also called Duo, Duet, or
TRAD, is a large neuronal dual Rho guanine nucleotide
exchange factor (RhoGEF) that activates Rac1, RhoA, and
RhoG using two RhoGEF domains. Kalirin exists in many
isoforms generated by alternative splicing and the use
of multiple promoters; the major isoforms are kalirin-7,
-9, and -12, which differ at their C-terminal ends.
Kalirin-12, the longest isoform, contains an N-terminal
Sec14p domain, spectrin-like repeats, two RhoGEF
domains, two SH3 domains, as well as Ig, FNIII, and
kinase domains at the C-terminal end. Kalirin-7 contains
only a single RhoGEF domain and does not contain an SH3
domain. Kalirin, through its many isoforms, interacts
with many different proteins and is able to localize to
different locations within the cell. It influences
neurite initiation, axon growth, dendritic
morphogenesis, vesicle trafficking, neuronal
maintenance, and neurodegeneration. SH3 domains are
protein interaction domains that bind to proline-rich
ligands with moderate affinity and selectivity,
preferentially to PxxP motifs. They play versatile and
diverse roles in the cell including the regulation of
enzymes, changing the subcellular localization of
signaling pathway components, and mediating the
formation of multiprotein complex assemblies.
Length = 59
Score = 25.5 bits (56), Expect = 4.2
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 120 LIWHDAKSEDPPNEGMWHPGDILGC 144
L++ A + P EG W PG +LG
Sbjct: 36 LVYRPATDQSPAAEG-WIPGSVLGH 59
>gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific
to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related
matrix-associated actin-dependent regulator of chromatin
subfamily A member 2 is a global transcriptional
activator, which cooperates with nuclear hormone
receptors to boost transcriptional activation.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 107
Score = 26.2 bits (58), Expect = 5.3
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 25 QCFNEHASLTDEDRIVLPRSHTQAMWTQAR 54
Q FN SL ED IVL Q+++ AR
Sbjct: 80 QTFNLEGSLIYEDSIVL-----QSVFKSAR 104
>gnl|CDD|240469 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tripartite
motif-containing proteins, TRIM9 and TRIM67. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of TRIM9 proteins. TRIM9 protein is
expressed mainly in the cerebral cortex, and functions
as an E3 ubiquitin ligase. It has been shown that TRIM9
is localized to the neurons in the normal human brain
and its immunoreactivity in affected brain areas in
Parkinson's disease and dementia with Lewy bodies is
severely decreased, possibly playing an important role
in the regulation of neuronal function and participating
in pathological process of Lewy body disease through its
ligase. TRIM67 negatively regulates Ras activity via
degradation of 80K-H , leading to neural
differentiation, including neuritogenesis.
Length = 172
Score = 26.5 bits (59), Expect = 7.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 133 EGMWHPGDILGCLLDVEARESVFYLNGR 160
EG G ++G LLD++ FY+N
Sbjct: 110 EGGITVGSVIGVLLDLDRGTLSFYVNDE 137
>gnl|CDD|177855 PLN02205, PLN02205, alpha,alpha-trehalose-phosphate synthase
[UDP-forming].
Length = 854
Score = 26.9 bits (59), Expect = 7.6
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 104 GIGDDEYSVAYDGCRQLIWHDAKSEDPPNE 133
G+GDDE V Y GC K E NE
Sbjct: 99 GLGDDEIEVIYVGC-------LKEEIHLNE 121
>gnl|CDD|240461 cd12881, SPRY_HERC1, SPRY domain in HERC1. This SPRY domain is
found in the HERC1, a large protein related to
chromosome condensation regulator RCC1. It is widely
expressed in many tissues, playing an important role in
intracellular membrane trafficking in the cytoplasm as
well as Golgi apparatus. HERC1 also interacts with
tuberous sclerosis 2 (TSC2, tuberin), which suppresses
cell growth, and results in the destabilization of TSC2.
However, the biological function of HERC1 has yet to be
defined.
Length = 160
Score = 26.1 bits (58), Expect = 8.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 137 HPGDILGCLLDVEARESVFYLNGRVVAV 164
GD + C+LD+E R F NG V
Sbjct: 103 TQGDYITCVLDMEERTLSFGKNGEEPGV 130
>gnl|CDD|199873 cd06254, M14_ASTE_ASPA_like_4, Peptidase M14 Succinylglutamate
desuccinylase (ASTE)/aspartoacylase (ASPA)-like;
uncharacterized subgroup. A functionally
uncharacterized subgroup of the Succinylglutamate
desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily
which is part of the M14 family of
metallocarboxypeptidases. ASTE catalyzes the fifth and
last step in arginine catabolism by the arginine
succinyltransferase pathway, and aspartoacylase (ASPA,
also known as aminoacylase 2, and ACY-2; EC:3.5.1.15)
cleaves N-acetyl L-aspartic acid (NAA) into aspartate
and acetate. NAA is abundant in the brain, and
hydrolysis of NAA by ASPA may help maintain white
matter. ASPA is an NAA scavenger in other tissues.
Mutations in the gene encoding ASPA cause Canavan
disease (CD), a fatal progressive neurodegenerative
disorder involving dysmyelination and spongiform
degeneration of white matter in children. This enzyme
binds zinc which is necessary for activity. Measurement
of elevated NAA levels in urine is used in the diagnosis
of CD.
Length = 291
Score = 26.5 bits (59), Expect = 8.6
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 119 QLIWHDAKSEDPPNEGMWHP----------GDILGCLLDVEARESVFY---LNGRVVAVT 165
+ D P G+W+P G +LG + D Y +G V+ T
Sbjct: 217 IVEIDDVYYVTSPASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT 276
Query: 166 SHL 168
+ L
Sbjct: 277 ATL 279
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.447
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,928,433
Number of extensions: 775281
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 25
Length of query: 178
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 87
Effective length of database: 6,901,388
Effective search space: 600420756
Effective search space used: 600420756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)