RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18079
(178 letters)
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription,
SPRY domain, prote binding, histone methylation, RBBP5,
DPY-30, nuclear; 2.07A {Homo sapiens}
Length = 213
Score = 89.6 bits (222), Expect = 8e-23
Identities = 17/109 (15%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 59 SFESVRCTFEVTSGVWYYETKI---RSAGVMQIGWATKKSKFLNHEGYGIGDDEYSVAYD 115
+ VR + V G WY+E + ++GW+ +G D++S ++
Sbjct: 38 GYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNL----QAPLGYDKFSYSWR 93
Query: 116 GCRQLIWHDAKSED--PPNEGMWHPGDILGCLLDVEARESVFYLNGRVV 162
+ +H + + + GD+LG +++ + ++
Sbjct: 94 SKKGTKFHQSIGKHYSSG----YGQGDVLGFYINLPEDTISGRGSSEII 138
Score = 27.2 bits (60), Expect = 2.8
Identities = 4/31 (12%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 1 MSFQQCRFNFGNKSTFLFPPSREFQCFNEHA 31
NFG + P ++ ++
Sbjct: 165 YKSCTVSINFGPCFKY-PPKDLTYRPMSDMG 194
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus,
apoptosis, UBL conjugation pathwayc, CL transcription
regulation, transcription, phosphoprotein; 1.80A {Homo
sapiens} PDB: 3ek9_A
Length = 217
Score = 85.1 bits (210), Expect = 5e-21
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 12/115 (10%)
Query: 57 AYSFESVRCTFEVTSGVWYYETKIRSAG---VMQIGWATKKSKFLNHEGY--GIGDDEYS 111
A S + R + G+ +E +G AT + L + Y +G + S
Sbjct: 70 AQSTDGARGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALA-PLQTDHYAALLGSNSES 128
Query: 112 VAYDGCRQLIWHDAKSEDPPN------EGMWHPGDILGCLLDVEARESVFYLNGR 160
+D R ++H +K P + L +LD+E + + G
Sbjct: 129 WGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGT 183
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription
regulation, transcription; 1.79A {Homo sapiens} PDB:
3f2o_A 2fnj_A 2v24_A 2ihs_A
Length = 212
Score = 77.8 bits (191), Expect = 2e-18
Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 14/138 (10%)
Query: 51 TQARCDAYSFESVRCTFEVTSGVWYYETKIRSA---GVMQIGWATKKSKFLNHEGY--GI 105
A S +++R T G+ ++ +G AT + L+ GY +
Sbjct: 54 FHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAP-LHSVGYTTLV 112
Query: 106 GDDEYSVAYDGCRQLIWHDAKSEDPPNEG-------MWHPGDILGCLLDVEARESVFYLN 158
G++ S +D R ++HD K++ + D LD++ F ++
Sbjct: 113 GNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVD 172
Query: 159 GRVVAVT-SHLFNVNLPP 175
G+ + V L L P
Sbjct: 173 GQYMGVAFRGLKGKKLYP 190
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR
{Mus musculus} SCOP: b.29.1.22
Length = 226
Score = 73.3 bits (179), Expect = 1e-16
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 13/131 (9%)
Query: 57 AYSFESVRCTFEVTSGVWYYETKIRSAG---VMQIGWATKKSKFLNHEGYG--IGDDEYS 111
A S + VR + G+ +E +G AT + L + Y +G + S
Sbjct: 67 AQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAP-LQADHYAALLGSNSES 125
Query: 112 VAYDGCRQLIWHDAK------SEDPPNEGMWHPGDILGCLLDVEARESVFYLNGRVVAVT 165
+D R ++H +K P + L +LD+E + + G +
Sbjct: 126 WGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPA 185
Query: 166 -SHLFNVNLPP 175
L L P
Sbjct: 186 FRGLKGRTLYP 196
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on
protein structural and functional analyses; 2.00A {Homo
sapiens}
Length = 171
Score = 66.9 bits (163), Expect = 1e-14
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 13/115 (11%)
Query: 56 DAYSFESVRCTFEVTSGVWYYETKIRSA---GVMQIGWATKKSKFLNHEGYGIGDDEYSV 112
++ + +T Y+E I + G + +G + + G+ SV
Sbjct: 23 NSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGW----LPDSV 78
Query: 113 AYDGCRQLIWHDAKSEDPPNEGMWHPGDILGC-----LLDVEARESVFYLNGRVV 162
AY +++ + GD +GC DV+ + F NG+ V
Sbjct: 79 AYHADDGKLYNGRAKGRQFGSK-CNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRV 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.004
Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 18/117 (15%)
Query: 62 SVRCTFEVTSGVWYYETKIRSAGVMQIGWATKKSKFLNHEGYGIGDDEYSVAYDGCRQLI 121
S+ V + ++ ++++ + T EG+ DDE + + + +
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPT--------EGFA-ADDEPTTPAELVGKFL 65
Query: 122 WHDAKSEDPPNEGMWHPGDILGCLLDVEARESVFYLNGRVVAVTSHLFNVNLPPGER 178
+ + +P G +L L E YL G + H L
Sbjct: 66 GYVSSLVEPSKVG--QFDQVLNLCLT-EFENC--YLEGNDI----HALAAKLLQEND 113
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.0 bits (62), Expect = 2.2
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 20 PSREFQ-CFNEHASLTDEDRIVLPRSHTQAMWT-QAR 54
+ + F E LT + RSH + W
Sbjct: 179 GLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVS 215
>3hia_A Choline binding protein; beta hairpin; 2.38A {Streptococcus
pneumoniae}
Length = 94
Score = 26.4 bits (59), Expect = 2.4
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 72 GVWYYETKIRSAGVMQIGWATKKSK--FLNHEGY 103
G+WY+ + G M GW +LN G
Sbjct: 23 GMWYF---YNTDGSMATGWVQVNGSWYYLNSNGS 53
>1h8g_A Major autolysin; choline-binding domain, cell WALL attachment;
2.4A {Streptococcus pneumoniae} SCOP: b.109.1.1
Length = 95
Score = 26.1 bits (58), Expect = 2.6
Identities = 7/19 (36%), Positives = 8/19 (42%), Gaps = 3/19 (15%)
Query: 72 GVWYYETKIRSAGVMQIGW 90
WYY G M+ GW
Sbjct: 23 DKWYY---FNEEGAMKTGW 38
>1hcx_A Major autolysin; choline-binding domain, cell WALL attachment;
HET: TPT DDQ; 2.6A {Streptococcus pneumoniae} SCOP:
b.109.1.1 PDB: 1gvm_A* 2bml_A*
Length = 127
Score = 26.5 bits (59), Expect = 3.2
Identities = 7/19 (36%), Positives = 8/19 (42%), Gaps = 3/19 (15%)
Query: 72 GVWYYETKIRSAGVMQIGW 90
WYY G M+ GW
Sbjct: 55 DKWYY---FNEEGAMKTGW 70
Score = 25.4 bits (56), Expect = 8.4
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 72 GVWYYETKIRSAGVMQIGWATKKSK--FLNHEGY 103
G WY+ ++G M GW K + N EG
Sbjct: 35 GNWYW---FDNSGEMATGWKKIADKWYYFNEEGA 65
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE,
alternative splicing, chromosomal rearrangement,
cytoplasm, differentiation; 1.89A {Homo sapiens} PDB:
3g1n_A
Length = 405
Score = 27.2 bits (61), Expect = 3.5
Identities = 9/27 (33%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 20 PSREFQCFNEHASLTDEDRIVLPRSHT 46
Q F H DR LP +HT
Sbjct: 347 GMNGIQKFQIHRDDRSTDR--LPSAHT 371
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 27.0 bits (59), Expect = 4.1
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 10/55 (18%)
Query: 1 MSFQQCRFNFGNKSTFLFPPSREFQCFNEHAS----------LTDEDRIVLPRSH 45
+ + Q +F N L E++ + A L ++ +VL
Sbjct: 181 LQYVQWQFAGPNTVHCLITSLAEYKLHQDFAKPHTTIQFHLDLANDKDMVLMNGQ 235
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding,
transcription, transcription regulator, transcription
regulation; 3.20A {Klebsiella pneumoniae}
Length = 315
Score = 26.3 bits (58), Expect = 5.3
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 139 GDILGCLLDVEARESVFYLNGRVVAVT 165
GDI D+ ++ + +++
Sbjct: 242 GDICSRFYDINGGLVDTNMSEKTLSIE 268
>2f6e_A Toxin A; beta solenoid, C-terminal repetitive domain, crops; 1.85A
{Clostridium difficile}
Length = 127
Score = 25.5 bits (56), Expect = 7.5
Identities = 10/55 (18%), Positives = 13/55 (23%), Gaps = 13/55 (23%)
Query: 72 GVWYYETKIRSAGVMQIGWATKKSK--FLNHEGYG--------IGDDEYSVAYDG 116
G YY + GW T + + I Y DG
Sbjct: 69 GNIYY---FGNNSKAVTGWQTINGNMYYFMPDTAMAAAGGLFEIDGVIYFFGVDG 120
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.447
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,810,738
Number of extensions: 154712
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 23
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)