RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18079
(178 letters)
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 60.2 bits (145), Expect = 4e-12
Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 12/131 (9%)
Query: 57 AYSFESVRCTFEVTSGVWYYETKIRS---AGVMQIGWATKK-SKFLNHEGYGIGDDEYSV 112
A S + +R +T G+ +E + +G T +G E S
Sbjct: 51 AQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVGSTEQSW 110
Query: 113 AYDGCRQLIWHDAKSEDPPNEGM-------WHPGDILGCLLDVEARESVFYLNGRVVAVT 165
+D R ++HD+K+ + D LD++ F ++ + + +
Sbjct: 111 GWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVDQQYLGIA 170
Query: 166 -SHLFNVNLPP 175
L L P
Sbjct: 171 FRGLRGKKLYP 181
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 54.9 bits (131), Expect = 3e-10
Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 11/130 (8%)
Query: 57 AYSFESVRCTFEVTSGVWYYETKIRSAG---VMQIGWATKK-SKFLNHEGYGIGDDEYSV 112
A S + VR + G+ +E +G AT +H +G + S
Sbjct: 61 AQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAALLGSNSESW 120
Query: 113 AYDGCRQLIWHDAK------SEDPPNEGMWHPGDILGCLLDVEARESVFYLNGRVVAVT- 165
+D R ++H +K P + L +LD+E + + G +
Sbjct: 121 GWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAF 180
Query: 166 SHLFNVNLPP 175
L L P
Sbjct: 181 RGLKGRTLYP 190
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 34.2 bits (78), Expect = 0.004
Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 3/121 (2%)
Query: 36 EDRIVLPRSHTQAMWTQARCDAYSFESVRCTFEVTSGVWYYETKIRSAGVMQIGWATKKS 95
EDR + TQ S+ V SG Y+E + +G
Sbjct: 18 EDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVTGKEAWDLGVCRDSV 77
Query: 96 KFLNHEGYGIGDDEYSVAYDGCRQLIWHDAKSEDPPNEGMWHPGDILGCLLDVEARESVF 155
+ H +++ ++ + P +G LD EA F
Sbjct: 78 RRKGHFLLSSKSGFWTIWLWNKQKYEAGTYPQTPLH---LQVPPCQVGIFLDYEAGMVSF 134
Query: 156 Y 156
Y
Sbjct: 135 Y 135
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 188
Score = 32.3 bits (73), Expect = 0.020
Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 4/129 (3%)
Query: 28 NEHASLTDEDRIVLPRSHTQAMWTQARCDAYSFESVRCTFEVTSGVWYYETKIRSAGVMQ 87
N + ++++ R +Q QA + V T TSG Y+E + ++ V
Sbjct: 20 NNYLIISEDLRSFRSGDLSQNRKEQAERFDTAL-CVLGTPRFTSGRHYWEVDVGTSQVWD 78
Query: 88 IGWATKKSKFLNHEGYGIGDDEYSVAYDGCRQLIWHDAKSEDPPNEGMWHPGDILGCLLD 147
+G + +V + +G LD
Sbjct: 79 VGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLWVS---PQLHRVGIFLD 135
Query: 148 VEARESVFY 156
V R FY
Sbjct: 136 VGMRSIAFY 144
>d2nwia1 d.190.1.3 (A:1-160) Hypothetical protein AF1396
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 160
Score = 25.4 bits (55), Expect = 3.1
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 150 ARESVFYLNGRVVAVTSHLFNVNL 173
+R G+V+ + F +
Sbjct: 136 SRNYNIIHRGKVLINITEFFPMER 159
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 131
Score = 24.9 bits (54), Expect = 3.8
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Query: 99 NHEGYGIGDDEYSVAYDGCRQLIWHDAKSEDPPNEGMWHPGDILGCLLDVEARESVFY-- 156
+HE ++ Q + + P G+ ++ S
Sbjct: 12 SHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSP 71
Query: 157 LNGRVVAVTSHL 168
++G V+ V + L
Sbjct: 72 ISGEVIEVNTGL 83
>d1qw2a_ d.249.1.1 (A:) Hypothetical protein Ta1206 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 102
Score = 24.7 bits (54), Expect = 4.2
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 141 ILGC-LLDVEARESVFYLNGRVVAVTSH 167
C L++E V + RV+ V +
Sbjct: 41 YAMCGYLNMETSNKVGDIAVRVMGVKTL 68
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Comamonas testosteroni [TaxId: 285]}
Length = 573
Score = 25.7 bits (55), Expect = 4.3
Identities = 12/107 (11%), Positives = 24/107 (22%)
Query: 50 WTQARCDAYSFESVRCTFEVTSGVWYYETKIRSAGVMQIGWATKKSKFLNHEGYGIGDDE 109
WT S C V GV ++ K+ A + + +
Sbjct: 101 WTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ 160
Query: 110 YSVAYDGCRQLIWHDAKSEDPPNEGMWHPGDILGCLLDVEARESVFY 156
++ G I + R+ ++
Sbjct: 161 KGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207
>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus
thermophilus [TaxId: 274]}
Length = 127
Score = 24.4 bits (53), Expect = 5.9
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 2/72 (2%)
Query: 99 NHEGYGIGDDEYSVAYDGCRQLIWHDAKSEDPPNEGMWHPGDILGCLLDVEARESVFY-- 156
HE D V Q D + P G +++ S Y
Sbjct: 11 THEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAP 70
Query: 157 LNGRVVAVTSHL 168
+ G +V V L
Sbjct: 71 VAGEIVEVNLAL 82
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 107
Score = 24.3 bits (52), Expect = 6.4
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 1 MSFQQCRFNFGNKSTFLFPPS------REFQCFNEHASLTDEDRIVLPRSH 45
+ C + + P S + Q +E L R+ SH
Sbjct: 50 IQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISETTMLQSGMRLQFGTSH 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.447
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 710,649
Number of extensions: 31519
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 14
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)