BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18081
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41374|IF2A_DROME Eukaryotic translation initiation factor 2 subunit 1 OS=Drosophila
melanogaster GN=eIF-2alpha PE=2 SV=1
Length = 341
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/57 (63%), Positives = 46/57 (80%)
Query: 1 MSTEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMA 57
+STE++PI+INLIAPPLYVMTT T +K DGLKAL+ AI+ I+AK + G F+V MA
Sbjct: 216 LSTEELPIRINLIAPPLYVMTTSTTKKTDGLKALEVAIEHIRAKTSEYDGEFKVIMA 272
>sp|Q5ZLX2|IF2A_CHICK Eukaryotic translation initiation factor 2 subunit 1 OS=Gallus
gallus GN=EIF2S1 PE=2 SV=2
Length = 315
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/55 (65%), Positives = 41/55 (74%)
Query: 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56
STE MPIKINLIAPP YVMTT T E+ +GL L +A+ IK KIE+ GVF VQM
Sbjct: 219 STENMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQM 273
>sp|P05198|IF2A_HUMAN Eukaryotic translation initiation factor 2 subunit 1 OS=Homo
sapiens GN=EIF2S1 PE=1 SV=3
Length = 315
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/55 (65%), Positives = 41/55 (74%)
Query: 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56
STE MPIKINLIAPP YVMTT T E+ +GL L +A+ IK KIE+ GVF VQM
Sbjct: 219 STENMPIKINLIAPPRYVMTTTTLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQM 273
>sp|Q6GL89|IF2A_XENTR Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus
tropicalis GN=eif2s1 PE=2 SV=1
Length = 315
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 41/55 (74%)
Query: 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56
STE MPIKINLIAPP YVMTT T E+ +GL L +A+ IK +IE+ GVF VQM
Sbjct: 219 STENMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMSVIKERIEEKRGVFNVQM 273
>sp|Q7ZTK4|IF2A_XENLA Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus
laevis GN=eif2s1 PE=2 SV=1
Length = 315
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 41/55 (74%)
Query: 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56
STE MPIKINLIAPP YVMTT T E+ +GL L +A+ IK +IE+ GVF VQM
Sbjct: 219 STENMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMSVIKERIEEKRGVFNVQM 273
>sp|Q5R493|IF2A_PONAB Eukaryotic translation initiation factor 2 subunit 1 OS=Pongo
abelii GN=EIF2S1 PE=2 SV=1
Length = 315
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/55 (65%), Positives = 41/55 (74%)
Query: 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56
STE MPIKINLIAPP YVMTT T E+ +GL L +A+ IK KIE+ GVF VQM
Sbjct: 219 STENMPIKINLIAPPRYVMTTTTLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQM 273
>sp|P68101|IF2A_RAT Eukaryotic translation initiation factor 2 subunit 1 OS=Rattus
norvegicus GN=Eif2s1 PE=1 SV=2
Length = 315
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/55 (65%), Positives = 41/55 (74%)
Query: 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56
STE MPIKINLIAPP YVMTT T E+ +GL L +A+ IK KIE+ GVF VQM
Sbjct: 219 STETMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQM 273
>sp|Q6ZWX6|IF2A_MOUSE Eukaryotic translation initiation factor 2 subunit 1 OS=Mus
musculus GN=Eif2s1 PE=1 SV=3
Length = 315
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/55 (65%), Positives = 41/55 (74%)
Query: 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56
STE MPIKINLIAPP YVMTT T E+ +GL L +A+ IK KIE+ GVF VQM
Sbjct: 219 STETMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQM 273
>sp|P68102|IF2A_BOVIN Eukaryotic translation initiation factor 2 subunit 1 OS=Bos taurus
GN=EIF2S1 PE=2 SV=2
Length = 315
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/55 (65%), Positives = 41/55 (74%)
Query: 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56
STE MPIKINLIAPP YVMTT T E+ +GL L +A+ IK KIE+ GVF VQM
Sbjct: 219 STETMPIKINLIAPPRYVMTTTTLERTEGLSVLNQAMAVIKEKIEEKRGVFNVQM 273
>sp|P20459|IF2A_YEAST Eukaryotic translation initiation factor 2 subunit alpha
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SUI2 PE=1 SV=1
Length = 304
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 1 MSTEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56
MSTE+M +K+ L+A PLYV+TT +K G++ L+ AI+ I I + GGV + M
Sbjct: 211 MSTEQMQVKVKLVAAPLYVLTTQALDKQKGIEQLESAIEKITEVITKYGGVCNITM 266
>sp|P56286|IF2A_SCHPO Eukaryotic translation initiation factor 2 subunit alpha
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif211 PE=1 SV=1
Length = 306
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 3 TEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56
TE++PIK+ L+APPLYV+ T +K+ GLK L+EAI I+ I G V+M
Sbjct: 214 TEEVPIKVKLVAPPLYVLLTNALDKSLGLKKLEEAIGAIEKSITASNGTCTVKM 267
>sp|Q869N9|IF2A_DICDI Eukaryotic translation initiation factor 2 subunit 1
OS=Dictyostelium discoideum GN=eif2s1 PE=1 SV=1
Length = 341
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 8 IKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAVSIL 61
+ I L+APPLYVM EK GL + + +D + +I + G ++ A I+
Sbjct: 237 VTIKLVAPPLYVMVGTFDEKEKGLSMVGQCVDVLSEEITKKNGNLTIKAAPRIV 290
>sp|Q57581|IF2A_METJA Translation initiation factor 2 subunit alpha OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=eif2a PE=3 SV=1
Length = 266
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 4 EKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGG 50
E + +KI I P Y + + P+ G + ++ + A I++LGG
Sbjct: 210 EDVEVKITYIGAPKYRVVVIAPDYKSGEEVFKKVCEKAVATIKKLGG 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,576,434
Number of Sequences: 539616
Number of extensions: 604298
Number of successful extensions: 2618
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2605
Number of HSP's gapped (non-prelim): 14
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)