Query psy18081
Match_columns 82
No_of_seqs 106 out of 158
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 22:09:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q8k_A Eukaryotic translation 99.9 4.4E-23 1.5E-27 157.4 7.2 75 1-75 215-289 (308)
2 1yz7_A Probable translation in 99.8 9.3E-19 3.2E-23 126.4 8.2 61 2-62 121-181 (188)
3 2qn6_B Translation initiation 99.7 1.3E-18 4.6E-23 113.9 5.8 55 2-56 34-92 (93)
4 3cw2_C Translation initiation 99.5 6.5E-15 2.2E-19 109.7 6.5 55 2-56 207-265 (266)
5 3aev_A Translation initiation 99.5 1.4E-15 4.8E-20 114.2 0.0 59 2-60 208-266 (275)
6 1xhj_A Nitrogen fixation prote 80.4 2.2 7.4E-05 27.0 3.8 26 31-56 9-34 (88)
7 1wgu_A APBB2, amyloid beta (A4 68.4 4.5 0.00015 27.1 3.2 48 18-66 22-70 (136)
8 2dyq_A Amyloid beta A4 precurs 65.4 4.2 0.00014 27.8 2.6 47 20-66 23-70 (144)
9 2yt0_A Amyloid beta A4 protein 61.7 12 0.00041 26.2 4.5 48 20-67 69-117 (176)
10 2qn6_B Translation initiation 57.4 6.2 0.00021 25.0 2.1 42 19-61 9-55 (93)
11 2ysz_A Amyloid beta A4 precurs 56.5 14 0.00049 26.0 4.1 48 18-66 22-70 (185)
12 2z51_A NIFU-like protein 2, ch 56.5 12 0.0004 25.6 3.6 25 32-56 7-31 (154)
13 1th5_A NIFU1; iron-sulfur clus 53.5 3.2 0.00011 25.4 0.3 25 31-55 6-31 (74)
14 1veh_A NIFU-like protein hirip 52.4 7.8 0.00027 24.5 2.0 29 28-56 12-41 (92)
15 3et6_A Soluble guanylyl cyclas 49.0 27 0.00093 22.7 4.4 33 24-56 26-58 (190)
16 2z51_A NIFU-like protein 2, ch 46.7 13 0.00043 25.5 2.5 25 32-56 88-113 (154)
17 3zzp_A TS9, ribosomal protein 42.8 18 0.00062 21.9 2.5 41 8-50 36-77 (77)
18 3dxe_A Amyloid beta A4 protein 42.8 30 0.001 23.2 3.8 43 24-66 19-62 (140)
19 3gmg_A Uncharacterized protein 42.1 67 0.0023 22.3 5.7 47 11-63 98-147 (170)
20 2fiu_A Conserved hypothetical 38.4 68 0.0023 19.6 5.5 44 15-61 4-47 (99)
21 3ehg_A Sensor kinase (YOCF pro 37.5 28 0.00095 20.8 2.8 21 38-58 95-115 (128)
22 3zxq_A Hypoxia sensor histidin 34.9 32 0.0011 20.0 2.7 22 37-58 89-110 (124)
23 3ehh_A Sensor kinase (YOCF pro 34.6 31 0.0011 22.0 2.8 22 37-58 184-205 (218)
24 4ffl_A PYLC; amino acid, biosy 34.5 75 0.0026 22.5 5.1 31 15-45 329-359 (363)
25 1cqm_A Ribosomal protein S6; a 32.8 48 0.0016 20.5 3.4 22 32-53 17-38 (101)
26 3zxo_A Redox sensor histidine 32.2 41 0.0014 19.6 2.9 22 37-58 93-114 (129)
27 3mb8_A Purine nucleoside phosp 31.5 30 0.001 25.2 2.5 34 32-65 234-267 (279)
28 3j21_L 50S ribosomal protein L 31.5 29 0.00098 23.5 2.3 14 41-54 133-146 (147)
29 1r62_A Nitrogen regulation pro 30.7 44 0.0015 19.9 2.9 22 37-58 126-147 (160)
30 3j21_P 50S ribosomal protein L 30.6 29 0.00099 22.7 2.2 14 41-54 89-102 (120)
31 2beq_A E2 glycoprotein; viral 30.4 40 0.0014 18.5 2.4 22 28-49 5-26 (38)
32 2kjw_A TS9, 30S ribosomal prot 29.9 33 0.0011 21.7 2.3 21 32-52 59-79 (96)
33 2pa8_L DNA-directed RNA polyme 29.3 27 0.00092 21.7 1.8 32 17-48 52-83 (92)
34 2bl5_A MGC83862 protein, quaki 28.5 77 0.0026 21.2 4.1 32 15-46 69-100 (140)
35 3r3t_A 30S ribosomal protein S 28.3 41 0.0014 20.8 2.5 21 32-52 20-40 (99)
36 2e0z_A Virus-like particle; ba 28.3 40 0.0014 25.7 2.9 55 25-82 223-286 (345)
37 4id3_A DNA repair protein REV1 28.3 38 0.0013 19.4 2.2 17 39-55 24-40 (92)
38 2j5a_A 30S ribosomal protein S 27.4 57 0.002 20.5 3.1 22 32-53 23-44 (110)
39 3nb0_A Glycogen [starch] synth 27.1 61 0.0021 27.4 4.0 40 16-55 332-372 (725)
40 2zkr_l 60S ribosomal protein L 27.0 32 0.0011 23.0 1.9 15 41-55 133-147 (148)
41 3fyq_A CG6831-PA (talin); 5-he 26.7 47 0.0016 24.0 2.9 23 25-47 167-189 (199)
42 1wjw_A Phosphoacetylglucosamin 26.6 1.2E+02 0.0041 18.9 4.8 34 16-49 68-101 (112)
43 1zzk_A Heterogeneous nuclear r 26.1 29 0.001 20.3 1.5 21 32-52 61-81 (82)
44 3lo3_A Uncharacterized conserv 25.8 1.1E+02 0.0039 18.4 6.3 40 15-58 3-43 (94)
45 3r8n_F 30S ribosomal protein S 24.5 47 0.0016 20.5 2.2 21 32-52 16-36 (100)
46 2otm_A Hypothetical protein; s 24.0 81 0.0028 20.8 3.5 38 28-65 63-105 (154)
47 1xpp_A TA1416, DNA-directed RN 23.9 36 0.0012 22.2 1.7 34 18-52 63-96 (115)
48 1lq7_A Alpha3W; three helix bu 23.8 74 0.0025 19.1 2.9 21 31-51 27-47 (67)
49 3r5g_A CYAB; adenylyl cyclase, 23.4 87 0.003 20.3 3.5 29 24-52 26-54 (198)
50 2kw7_A Conserved domain protei 23.3 80 0.0027 20.5 3.3 56 17-76 19-74 (157)
51 3c48_A Predicted glycosyltrans 22.6 1.9E+02 0.0064 20.2 5.3 29 16-44 243-271 (438)
52 1ysr_A Sensor-type histidine k 22.5 53 0.0018 19.7 2.2 21 38-58 116-136 (150)
53 2w01_A Adenylate cyclase; guan 22.4 1.2E+02 0.004 20.1 4.1 29 24-52 31-59 (208)
54 2ebw_A DNA repair protein REV1 22.3 49 0.0017 19.3 2.0 16 39-54 29-44 (97)
55 3mgj_A Uncharacterized protein 21.8 78 0.0027 21.0 3.0 19 33-55 17-35 (118)
56 1twf_K B13.6, DNA-directed RNA 21.5 50 0.0017 21.6 2.0 36 17-52 70-105 (120)
57 1j5k_A Heterogeneous nuclear r 21.5 67 0.0023 19.0 2.5 21 32-52 68-88 (89)
58 2o97_B NS1, HU-1, DNA-binding 21.3 1.4E+02 0.0047 17.6 4.4 36 23-58 14-56 (90)
59 3o58_Y 60S ribosomal protein L 21.2 40 0.0014 23.1 1.5 13 42-54 135-147 (149)
60 1mul_A NS2, HU-2, DNA binding 20.7 1.4E+02 0.0048 17.5 4.5 36 23-58 14-56 (90)
61 4a8p_A Putrescine carbamoyltra 20.2 53 0.0018 25.2 2.2 40 7-59 177-216 (355)
62 2c2a_A Sensor histidine kinase 20.2 83 0.0028 20.6 2.9 21 38-58 215-235 (258)
63 3d36_A Sporulation kinase B; G 20.0 86 0.003 20.0 2.9 20 38-57 192-211 (244)
No 1
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.88 E-value=4.4e-23 Score=157.44 Aligned_cols=75 Identities=48% Similarity=0.658 Sum_probs=72.2
Q ss_pred CCCCCcceEEEEecCCeEEEEeeeCCHHHHHHHHHHHHHHHHHHHhhcCCeEEEEeceeEeeccccchhhhcccc
Q psy18081 1 MSTEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAVSILLMSMIQNSQTDLFN 75 (82)
Q Consensus 1 ~ste~~~IkIkLIApPlYvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~~Vk~~PkvVse~d~~~l~~~~~~ 75 (82)
+++++++|+|+||+||+|+|+++|+||++|+++|++|+++|++.|+++||+|+++++||+||++|+++|+++|=+
T Consensus 215 ~~~~~~~i~i~~v~~P~Y~i~~~~~d~k~~~~~l~~~~~~i~~~i~~~gG~~~~~~~p~~v~~~~~~~~~~~~~~ 289 (308)
T 1q8k_A 215 CSTENMPIKINLIAPPRYVMTTTTLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMER 289 (308)
T ss_dssp SSBTTBCEEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHHHHHHHTTSCEECCSSCCEECCSSHHHHHHHHCCS
T ss_pred ccCcCccEEEEEECCCEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEECCEecChhhHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999854
No 2
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=99.77 E-value=9.3e-19 Score=126.39 Aligned_cols=61 Identities=15% Similarity=0.271 Sum_probs=57.5
Q ss_pred CCCCcceEEEEecCCeEEEEeeeCCHHHHHHHHHHHHHHHHHHHhhcCCeEEEEeceeEee
Q psy18081 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAVSILL 62 (82)
Q Consensus 2 ste~~~IkIkLIApPlYvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~~Vk~~PkvVs 62 (82)
++++++|+|+||+||+|+|+++|+||..|+++|++|++.|++.|+++||+|+|+++++.+-
T Consensus 121 ~~~~~~ikI~lvgaP~Y~i~~~~~Dkk~g~~~L~~aie~i~~~I~~~gG~~~v~r~~~~~~ 181 (188)
T 1yz7_A 121 KEKDVEVKFTYLGAPRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRKEKRIK 181 (188)
T ss_dssp TSTTCEEEEEECSTTEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCC--
T ss_pred CCCCCcEEEEEEcCcEEEEEEeeCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEEcHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999987653
No 3
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=99.75 E-value=1.3e-18 Score=113.95 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=51.6
Q ss_pred CCCCcc----eEEEEecCCeEEEEeeeCCHHHHHHHHHHHHHHHHHHHhhcCCeEEEEe
Q psy18081 2 STEKMP----IKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56 (82)
Q Consensus 2 ste~~~----IkIkLIApPlYvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~~Vk~ 56 (82)
++++++ |+|+||+||+|+|+++|+||+.|+++|++|++.|++.|+++||+|+++.
T Consensus 34 ~~~~~~~~~~vkI~~vgaP~Y~i~~~~~D~k~ge~~L~~ai~~i~~~i~~~gG~~~v~R 92 (93)
T 2qn6_B 34 IEQDYESLLNIKIYTIGAPRYRVDVVGTNPKEASEALNQIISNLIKIGKEENVDISVVK 92 (93)
T ss_dssp HHHHCTTEEEEEEEESSTTEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHTTEEEEECC
T ss_pred cccccCccceEEEEEEcCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 456676 9999999999999999999999999999999999999999999999864
No 4
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.55 E-value=6.5e-15 Score=109.66 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=52.5
Q ss_pred CCCCcc----eEEEEecCCeEEEEeeeCCHHHHHHHHHHHHHHHHHHHhhcCCeEEEEe
Q psy18081 2 STEKMP----IKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56 (82)
Q Consensus 2 ste~~~----IkIkLIApPlYvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~~Vk~ 56 (82)
++++++ |+|+||+||+|+|+++|+|+++|+++|++|+++|++.|+++||+|++++
T Consensus 207 ~~~~~~~~~~i~i~~v~~P~Y~i~~~~~d~k~~~~~l~~~~~~~~~~i~~~~g~~~~~r 265 (266)
T 3cw2_C 207 IEQDYESLLNIKIYTIGAPRYRVDVVGTNPKEASEALNQIISNLIKIGKEENVDISVVK 265 (266)
T ss_dssp CTTTSCSEEEEECBBSSSSEEEEEEEESCHHHHHHHHHHHHHHHHHHHTTTTCCEEECC
T ss_pred cccccCccceEEEEEEcCCEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 577887 9999999999999999999999999999999999999999999999875
No 5
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.51 E-value=1.4e-15 Score=114.17 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=0.0
Q ss_pred CCCCcceEEEEecCCeEEEEeeeCCHHHHHHHHHHHHHHHHHHHhhcCCeEEEEeceeE
Q psy18081 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAVSI 60 (82)
Q Consensus 2 ste~~~IkIkLIApPlYvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~~Vk~~Pkv 60 (82)
++++++|+|+||+||+|+|+++|+|+++|+++|++|++.|++.|+++||+|+++.++.-
T Consensus 208 ~~~~~~i~i~~v~~P~Y~i~~~~~d~k~~~~~l~~~~~~~~~~i~~~gg~~~~~r~~~~ 266 (275)
T 3aev_A 208 KEKDIEVKFTYQGAPRYRIDITAPDYYKAEEVLEDIAEEILRVIKQAGGEATLLRKEKR 266 (275)
T ss_dssp -----------------------------------------------------------
T ss_pred cCCCCCEEEEEECCCEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEEcHHH
Confidence 57889999999999999999999999999999999999999999999999999988753
No 6
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=80.36 E-value=2.2 Score=27.02 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEe
Q psy18081 31 LKALQEAIDTIKAKIEQLGGVFQVQM 56 (82)
Q Consensus 31 i~~L~~Aie~I~~~I~~~gG~~~Vk~ 56 (82)
++.++++|+.||-.+.+.||.+.+..
T Consensus 9 ~~~I~~~L~~IRP~L~~dGGdvelv~ 34 (88)
T 1xhj_A 9 FDQVAEVIERLRPFLLRDGGDCTLVD 34 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHHHHhcHHHHhcCCeEEEEE
Confidence 67899999999999999999998764
No 7
>1wgu_A APBB2, amyloid beta (A4) precursor protein-bindin, family B, member 2; phosphotyrosine-interaction domain, amyloid disease, structural genomics; NMR {Mus musculus} SCOP: b.55.1.2 PDB: 2roz_B
Probab=68.36 E-value=4.5 Score=27.08 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=33.0
Q ss_pred EEEEeeeCCHHHHHHHHHHHHHHHHHHHh-hcCCeEEEEeceeEeecccc
Q psy18081 18 YVMTTVTPEKADGLKALQEAIDTIKAKIE-QLGGVFQVQMAVSILLMSMI 66 (82)
Q Consensus 18 Yvltt~tlDK~~Gi~~L~~Aie~I~~~I~-~~gG~~~Vk~~PkvVse~d~ 66 (82)
|.-. +.-++-.|++++++||++|..... +.=-...|...|.-++-.|.
T Consensus 22 yLGs-v~V~~p~G~dV~~~Ai~~i~~~~~~~~~~~v~l~Vs~~gi~v~~~ 70 (136)
T 1wgu_A 22 YLGM-LPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVISE 70 (136)
T ss_dssp EEEE-EECSCSSCSHHHHHHHHHHHHSSCTTTSCEEEEEEETTEEEEECS
T ss_pred ecCc-EEcCCCCcHHHHHHHHHHHHhccccccCceEEEEEccCEEEEEec
Confidence 4433 444778999999999999998652 22245666777777766554
No 8
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens}
Probab=65.40 E-value=4.2 Score=27.81 Aligned_cols=47 Identities=28% Similarity=0.264 Sum_probs=33.4
Q ss_pred EEeeeCCHHHHHHHHHHHHHHHHHHHhhc-CCeEEEEeceeEeecccc
Q psy18081 20 MTTVTPEKADGLKALQEAIDTIKAKIEQL-GGVFQVQMAVSILLMSMI 66 (82)
Q Consensus 20 ltt~tlDK~~Gi~~L~~Aie~I~~~I~~~-gG~~~Vk~~PkvVse~d~ 66 (82)
|-.+.-.|..|+++|++||+.|..+.... =....|.-+|.-++-.|.
T Consensus 23 LGsv~V~~~~G~dVln~Ai~~l~~~~~~~~w~~v~l~Vs~~~i~v~~~ 70 (144)
T 2dyq_A 23 MGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPI 70 (144)
T ss_dssp EEEEEESSSCCHHHHHHHHHHHHCCCSSCCCEEEEEEECSSEEEEEEC
T ss_pred eccEEecCccCHHHHHHHHHHHHhcCCcccCcceEEEEeccceEEecc
Confidence 34455567899999999999998755432 245677778887775544
No 9
>2yt0_A Amyloid beta A4 protein and amyloid beta A4 precursor protein-binding family B member...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus} PDB: 2yt1_A
Probab=61.74 E-value=12 Score=26.23 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=34.4
Q ss_pred EEeeeCCHHHHHHHHHHHHHHHHHHHhh-cCCeEEEEeceeEeeccccc
Q psy18081 20 MTTVTPEKADGLKALQEAIDTIKAKIEQ-LGGVFQVQMAVSILLMSMIQ 67 (82)
Q Consensus 20 ltt~tlDK~~Gi~~L~~Aie~I~~~I~~-~gG~~~Vk~~PkvVse~d~~ 67 (82)
|-.+.-++-.|++++++||++|+..... .=-...|...|.-++-.|..
T Consensus 69 LGsv~V~~p~G~dVl~~AI~kl~~~~~~~~~~~V~L~VS~~gI~v~d~~ 117 (176)
T 2yt0_A 69 LGMLPVDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVISEK 117 (176)
T ss_dssp EEEEECSCSSCHHHHHHHHHHHHHHSCTTTSCEEEEECGGGEEEEEESS
T ss_pred cCceEccCCccHHHHHHHHHHHHhccCcccCcceEEEEcCCEEEEEecC
Confidence 3344557789999999999999987622 22457777788777766653
No 10
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=57.43 E-value=6.2 Score=24.97 Aligned_cols=42 Identities=24% Similarity=0.102 Sum_probs=30.1
Q ss_pred EEEeeeCCHHHHHHHHHHHHHHHHHHHhhcC-----CeEEEEeceeEe
Q psy18081 19 VMTTVTPEKADGLKALQEAIDTIKAKIEQLG-----GVFQVQMAVSIL 61 (82)
Q Consensus 19 vltt~tlDK~~Gi~~L~~Aie~I~~~I~~~g-----G~~~Vk~~PkvV 61 (82)
.+..+|.+- +||+.+++|+.+-.+..+... =+++...+|+=+
T Consensus 9 ~iel~c~~~-dGIe~IK~AL~~a~~~~~~~~~~~~~vkI~~vgaP~Y~ 55 (93)
T 2qn6_B 9 LITVRTNEP-LGVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYR 55 (93)
T ss_dssp EEEEEECCT-TTHHHHHHHHHHHHTTHHHHCTTEEEEEEEESSTTEEE
T ss_pred EEEEEeCCC-chHHHHHHHHHHHHhhcccccCccceEEEEEEcCCeEE
Confidence 355556553 699999999998877666544 377778888744
No 11
>2ysz_A Amyloid beta A4 precursor protein-binding family B member 2 and amyloid beta A4 protein...; chimera, Fe65L, PID domain, amyloid precursor protein; NMR {Mus musculus}
Probab=56.51 E-value=14 Score=26.05 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=32.5
Q ss_pred EEEEeeeCCHHHHHHHHHHHHHHHHHHHhhc-CCeEEEEeceeEeecccc
Q psy18081 18 YVMTTVTPEKADGLKALQEAIDTIKAKIEQL-GGVFQVQMAVSILLMSMI 66 (82)
Q Consensus 18 Yvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~-gG~~~Vk~~PkvVse~d~ 66 (82)
|.-.+. -++-.|++++++||++|+...... =-...|...|.-+.-.|.
T Consensus 22 YLGsv~-V~~p~G~dV~~~Ai~kl~~~~~~~k~~~V~L~VS~~gI~v~d~ 70 (185)
T 2ysz_A 22 YLGMLP-VDRPVGMDTLNSAIENLMTSSSKEDWPSVNMNVADATVTVISE 70 (185)
T ss_dssp EEEEEE-ESSSSCHHHHHHHHHHHHHHSCTTTSCEEEEEEETTEEEEEES
T ss_pred ecCcEE-ecCCCcHHHHHHHHHHHHhccccccCceEEEEEecCEEEEEec
Confidence 444443 477899999999999999875322 244566666766665554
No 12
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=56.46 E-value=12 Score=25.65 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEe
Q psy18081 32 KALQEAIDTIKAKIEQLGGVFQVQM 56 (82)
Q Consensus 32 ~~L~~Aie~I~~~I~~~gG~~~Vk~ 56 (82)
+.++++|+.|+-.+.++||.+.+..
T Consensus 7 e~v~~~L~~iRP~l~~dGGdvelv~ 31 (154)
T 2z51_A 7 ENVESVLDEIRPYLMSDGGNVALHE 31 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhChHHHhcCCeEEEEE
Confidence 4689999999999999999998763
No 13
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=53.55 E-value=3.2 Score=25.40 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhcC-CeEEEE
Q psy18081 31 LKALQEAIDTIKAKIEQLG-GVFQVQ 55 (82)
Q Consensus 31 i~~L~~Aie~I~~~I~~~g-G~~~Vk 55 (82)
.+.++++|+.|+-.+.++| |++.+.
T Consensus 6 ~~~V~~~L~~iRP~L~~dGGGdvelv 31 (74)
T 1th5_A 6 EENVEKVLNEIRPYLAGTGGGGLQFL 31 (74)
T ss_dssp HHHHHHHHTTTHHHHTTTTCCCCCCC
T ss_pred HHHHHHHHHHHhHHHHhcCCCcEEEE
Confidence 4678999999999999999 976554
No 14
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=52.42 E-value=7.8 Score=24.53 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHH-HHHHHhhcCCeEEEEe
Q psy18081 28 ADGLKALQEAIDT-IKAKIEQLGGVFQVQM 56 (82)
Q Consensus 28 ~~Gi~~L~~Aie~-I~~~I~~~gG~~~Vk~ 56 (82)
+.=++.++++|+. |+-.+.+.||.+.+..
T Consensus 12 ~~~~~~I~~~L~~~IRP~L~~dGGdvelv~ 41 (92)
T 1veh_A 12 DEVVAMIKELLDTRIRPTVQEDGGDVIYRG 41 (92)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHSCCCCEEE
T ss_pred hHHHHHHHHHHHHHhhHHHHhcCCeEEEEE
Confidence 3447889999996 9999999999987763
No 15
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B
Probab=49.04 E-value=27 Score=22.69 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=28.3
Q ss_pred eCCHHHHHHHHHHHHHHHHHHHhhcCCeEEEEe
Q psy18081 24 TPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56 (82)
Q Consensus 24 tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~~Vk~ 56 (82)
.++-++-+.+|++-...+.+.|+++||.++++.
T Consensus 26 ~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~vk~ 58 (190)
T 3et6_A 26 RSSPLEVXSLLDELYQRFDAAIEEYPQLYKVET 58 (190)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEEC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 356788899999999999999999988887764
No 16
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=46.65 E-value=13 Score=25.46 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhh-cCCeEEEEe
Q psy18081 32 KALQEAIDTIKAKIEQ-LGGVFQVQM 56 (82)
Q Consensus 32 ~~L~~Aie~I~~~I~~-~gG~~~Vk~ 56 (82)
+.++++++.||-.+.+ .||++.+..
T Consensus 88 ~~v~~~L~~iRP~L~~~dGGdvelv~ 113 (154)
T 2z51_A 88 ENIEKVLEEIRPYLIGTADGSLDLVE 113 (154)
T ss_dssp HHHHHHHHHHGGGCCGGGCCEEEEEE
T ss_pred HHHHHHHHHHHHHhhhcCCCCeEEEE
Confidence 6789999999999998 899988753
No 17
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=42.79 E-value=18 Score=21.90 Aligned_cols=41 Identities=20% Similarity=0.376 Sum_probs=26.5
Q ss_pred eEEEEecCCeEEEEe-eeCCHHHHHHHHHHHHHHHHHHHhhcCC
Q psy18081 8 IKINLIAPPLYVMTT-VTPEKADGLKALQEAIDTIKAKIEQLGG 50 (82)
Q Consensus 8 IkIkLIApPlYvltt-~tlDK~~Gi~~L~~Aie~I~~~I~~~gG 50 (82)
+-|++=.|..|-+.- -..|= .=+..+.+++.+++.|++.||
T Consensus 36 l~vr~d~~r~YE~m~Il~P~l--~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 36 MVVASTTPGRYEVNIVLNPNL--DQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp EEEECSSTTEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhccCCCceEEEEEECCCC--CHHHHHHHHHHHHHHHHhcCC
Confidence 345666777775432 11211 124677889999999999998
No 18
>3dxe_A Amyloid beta A4 protein-binding family B member 1; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} SCOP: b.55.1.0 PDB: 3dxd_A 3dxc_A
Probab=42.77 E-value=30 Score=23.19 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=28.6
Q ss_pred eCCHHHHHHHHHHHHHHHHHHHhh-cCCeEEEEeceeEeecccc
Q psy18081 24 TPEKADGLKALQEAIDTIKAKIEQ-LGGVFQVQMAVSILLMSMI 66 (82)
Q Consensus 24 tlDK~~Gi~~L~~Aie~I~~~I~~-~gG~~~Vk~~PkvVse~d~ 66 (82)
.-++-.|++++++||+.|...-.. ..-...|.-.|.-++-.|+
T Consensus 19 ~V~~p~G~~Vl~~Ai~ki~~~~~~~~~~~v~l~Vs~~gi~v~~~ 62 (140)
T 3dxe_A 19 PVAKPVGVDVINGALESVLSSSSREQWTPSHVSVAPATLTILHQ 62 (140)
T ss_dssp EESCSCCHHHHHHHHHHHHHTCCGGGCEEEEEEECSSEEEEEET
T ss_pred EECCCCcHHHHHHHHHHHHhcCCcCCCceEEEEEcCCEEEEEec
Confidence 335567999999999999876432 1234666667766655443
No 19
>3gmg_A Uncharacterized protein RV1825/MT1873; structural genomics, unknown function, cell membrane, membrane, transmembrane, PSI-2; 1.50A {Mycobacterium tuberculosis}
Probab=42.07 E-value=67 Score=22.35 Aligned_cols=47 Identities=21% Similarity=0.480 Sum_probs=33.6
Q ss_pred EEecCCeEEEEeeeCCHHHHHHHHHHHHHH---HHHHHhhcCCeEEEEeceeEeec
Q psy18081 11 NLIAPPLYVMTTVTPEKADGLKALQEAIDT---IKAKIEQLGGVFQVQMAVSILLM 63 (82)
Q Consensus 11 kLIApPlYvltt~tlDK~~Gi~~L~~Aie~---I~~~I~~~gG~~~Vk~~PkvVse 63 (82)
+-++|| |+++.-- |. +.|..|+.. +.+..+..|..++|+...++.=.
T Consensus 98 ~~~~~P-y~I~AIG-dp----~~L~~al~~~ggv~~~l~~~g~~v~V~~~d~v~Ip 147 (170)
T 3gmg_A 98 KVLSPP-YSILAIG-DP----PTLAAAMNIPGGAQDGVKRVGGRMVVQQADRVDVT 147 (170)
T ss_dssp EEECSS-EEEEEES-CH----HHHHHHHTSTTSHHHHHHHTTCEEEEEEEEEEEEC
T ss_pred EEecCC-EEEEEEE-CH----HHHHHHHcCChhHHHHHHHcCCEEEEEecceEEEe
Confidence 345777 9998877 44 457777753 56778889999999887766543
No 20
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=38.45 E-value=68 Score=19.65 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=29.3
Q ss_pred CCeEEEEeeeCCHHHHHHHHHHHHHHHHHHHhhcCCeEEEEeceeEe
Q psy18081 15 PPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAVSIL 61 (82)
Q Consensus 15 pPlYvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~~Vk~~PkvV 61 (82)
+|-|+|...+..-. +.+.+=.+.....++++||+|.+......+
T Consensus 4 ~~~Y~I~~~~v~d~---e~y~~Y~~~~~~~~~~~gGr~l~~g~~~~~ 47 (99)
T 2fiu_A 4 AKGYWIAQVDVRDS---ERYKDYVSTAKPAFERFGANFLARGGSVTE 47 (99)
T ss_dssp CCEEEEEEEEESCH---HHHHHHHHHHHHHHHHTTCEEEEESCCEEE
T ss_pred CcEEEEEEEEeCCH---HHHHHHHHHHHHHHHHcCcEEEEECCCceE
Confidence 56787765543323 334556667778899999999998554433
No 21
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=37.51 E-value=28 Score=20.81 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=15.8
Q ss_pred HHHHHHHHhhcCCeEEEEece
Q psy18081 38 IDTIKAKIEQLGGVFQVQMAV 58 (82)
Q Consensus 38 ie~I~~~I~~~gG~~~Vk~~P 58 (82)
+..+++.++.+||++.+...|
T Consensus 95 L~~~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 95 LLGMRERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHHcCCEEEEEeCC
Confidence 345666777899999988766
No 22
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=34.85 E-value=32 Score=20.04 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhcCCeEEEEece
Q psy18081 37 AIDTIKAKIEQLGGVFQVQMAV 58 (82)
Q Consensus 37 Aie~I~~~I~~~gG~~~Vk~~P 58 (82)
-+..+++.++.+||++.+...|
T Consensus 89 GL~~~~~~~~~~gG~i~~~~~~ 110 (124)
T 3zxq_A 89 GLRNLRQRADDAGGEFTVENMP 110 (124)
T ss_dssp HHHHHHHHHHHHTCEEEEEECT
T ss_pred CHHHHHHHHHHhCCEEEEEEcC
Confidence 3445677778889999887654
No 23
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=34.58 E-value=31 Score=22.03 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhcCCeEEEEece
Q psy18081 37 AIDTIKAKIEQLGGVFQVQMAV 58 (82)
Q Consensus 37 Aie~I~~~I~~~gG~~~Vk~~P 58 (82)
-+..+++.++.+||.+.+...|
T Consensus 184 GL~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 184 GLLGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHHHHHHTTCEEEEECSS
T ss_pred CHHHHHHHHHHcCCEEEEeCCC
Confidence 3566777888999999998776
No 24
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=34.46 E-value=75 Score=22.48 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=26.4
Q ss_pred CCeEEEEeeeCCHHHHHHHHHHHHHHHHHHH
Q psy18081 15 PPLYVMTTVTPEKADGLKALQEAIDTIKAKI 45 (82)
Q Consensus 15 pPlYvltt~tlDK~~Gi~~L~~Aie~I~~~I 45 (82)
.+...+...-.|+++.++.+++|++.|+...
T Consensus 329 ~~v~~vi~~G~~~~eA~~k~~~al~~i~~~~ 359 (363)
T 4ffl_A 329 YPVFTMVFWGKDREETGAKRCKGLSVLKERF 359 (363)
T ss_dssp SCEEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEECCHHHHHHHHHHHHHHHHHHh
Confidence 3566688889999999999999999998754
No 25
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=32.78 E-value=48 Score=20.48 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhcCCeEE
Q psy18081 32 KALQEAIDTIKAKIEQLGGVFQ 53 (82)
Q Consensus 32 ~~L~~Aie~I~~~I~~~gG~~~ 53 (82)
+-+...++.+++.|++.||...
T Consensus 17 e~~~~~~~~~~~~i~~~gg~i~ 38 (101)
T 1cqm_A 17 SQLALEKEIIQRALENYGARVE 38 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEE
Confidence 4567788899999999999763
No 26
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=32.22 E-value=41 Score=19.62 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhcCCeEEEEece
Q psy18081 37 AIDTIKAKIEQLGGVFQVQMAV 58 (82)
Q Consensus 37 Aie~I~~~I~~~gG~~~Vk~~P 58 (82)
-+..+++.++.+||++.+...|
T Consensus 93 GL~i~~~~~~~~gG~i~~~~~~ 114 (129)
T 3zxo_A 93 GLTNLRQRAEQAGGEFTLASMP 114 (129)
T ss_dssp HHHHHHHHHHHTTCEEEEEECT
T ss_pred CHHHHHHHHHHcCCEEEEeeCC
Confidence 3455667778899999887654
No 27
>3mb8_A Purine nucleoside phosphorylase; PNP, immucillin H, IMMH, TR; HET: IMH; 1.90A {Toxoplasma gondii}
Probab=31.50 E-value=30 Score=25.18 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEeceeEeeccc
Q psy18081 32 KALQEAIDTIKAKIEQLGGVFQVQMAVSILLMSM 65 (82)
Q Consensus 32 ~~L~~Aie~I~~~I~~~gG~~~Vk~~PkvVse~d 65 (82)
..++-|+++++.-+++..|+|.--.+-|.+|++|
T Consensus 234 ~~i~ialea~~~L~~~~~~~~~~~~~~~~~~~~~ 267 (279)
T 3mb8_A 234 NMVKITLKACANLRRQYKGEFEAYVEQKLISEED 267 (279)
T ss_dssp HHHHHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhccHhh
Confidence 4678899999999999999999888999999854
No 28
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.48 E-value=29 Score=23.49 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=10.7
Q ss_pred HHHHHhhcCCeEEE
Q psy18081 41 IKAKIEQLGGVFQV 54 (82)
Q Consensus 41 I~~~I~~~gG~~~V 54 (82)
-++.||+.||++.+
T Consensus 133 A~ekIeaaGG~v~~ 146 (147)
T 3j21_L 133 AEEKIKAAGGEAVL 146 (147)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCEEEe
Confidence 34578889999876
No 29
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=30.66 E-value=44 Score=19.92 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhcCCeEEEEece
Q psy18081 37 AIDTIKAKIEQLGGVFQVQMAV 58 (82)
Q Consensus 37 Aie~I~~~I~~~gG~~~Vk~~P 58 (82)
.+..+++.++.+||.+.+...|
T Consensus 126 GL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 126 GLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp HHHHHHHHHHHTTCEEEEEEET
T ss_pred CHHHHHHHHHHCCCeEEEEeCC
Confidence 4556778888999999987654
No 30
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.59 E-value=29 Score=22.69 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=11.3
Q ss_pred HHHHHhhcCCeEEE
Q psy18081 41 IKAKIEQLGGVFQV 54 (82)
Q Consensus 41 I~~~I~~~gG~~~V 54 (82)
-++.||+.||++.+
T Consensus 89 A~ekIe~AGG~v~~ 102 (120)
T 3j21_P 89 ARRKIIEAGGEAIT 102 (120)
T ss_dssp HHHHHTTTSSCEEE
T ss_pred HHHHHHHcCCEEEE
Confidence 45688999999865
No 31
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=30.36 E-value=40 Score=18.53 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q psy18081 28 ADGLKALQEAIDTIKAKIEQLG 49 (82)
Q Consensus 28 ~~Gi~~L~~Aie~I~~~I~~~g 49 (82)
.+|+.....|+.+|.+.+-..|
T Consensus 5 ~~g~~tv~~AL~KiQ~VVN~q~ 26 (38)
T 2beq_A 5 QESLTTTSTALGKLQDVVNQNA 26 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 5799999999999999986654
No 32
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=29.94 E-value=33 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhcCCeE
Q psy18081 32 KALQEAIDTIKAKIEQLGGVF 52 (82)
Q Consensus 32 ~~L~~Aie~I~~~I~~~gG~~ 52 (82)
+.++..++.+++.|++.||+.
T Consensus 59 e~~~~~ve~~~~iI~~~gG~i 79 (96)
T 2kjw_A 59 SQLALEKEIIQRALENYGARV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCEE
Confidence 457778999999999999975
No 33
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=29.25 E-value=27 Score=21.70 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=23.3
Q ss_pred eEEEEeeeCCHHHHHHHHHHHHHHHHHHHhhc
Q psy18081 17 LYVMTTVTPEKADGLKALQEAIDTIKAKIEQL 48 (82)
Q Consensus 17 lYvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~ 48 (82)
.-.++.+|.+...-+++|++|++.+.+.....
T Consensus 52 ~~~lrIqT~~~~~p~~al~~a~~~l~~~~~~~ 83 (92)
T 2pa8_L 52 KIIVKILTDGSITPKDALLKAIENIRGMTSHY 83 (92)
T ss_dssp CEEEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34566677655568899999999888776553
No 34
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=28.49 E-value=77 Score=21.24 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=24.0
Q ss_pred CCeEEEEeeeCCHHHHHHHHHHHHHHHHHHHh
Q psy18081 15 PPLYVMTTVTPEKADGLKALQEAIDTIKAKIE 46 (82)
Q Consensus 15 pPlYvltt~tlDK~~Gi~~L~~Aie~I~~~I~ 46 (82)
-||+|+-+....-...-..|..|++.|+.-+.
T Consensus 69 epLHV~Isa~~~~~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 69 EDLHVLITVEDAQNRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHHHHHHHSS
T ss_pred CCcEEEEEecCchhhHHHHHHHHHHHHHHHCC
Confidence 57888766654455677789999999988764
No 35
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=28.33 E-value=41 Score=20.79 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhcCCeE
Q psy18081 32 KALQEAIDTIKAKIEQLGGVF 52 (82)
Q Consensus 32 ~~L~~Aie~I~~~I~~~gG~~ 52 (82)
+.+..+++.+.+.|++.||..
T Consensus 20 e~~~~~~~~~~~~i~~~gg~i 40 (99)
T 3r3t_A 20 EAQKALVERFAGVLTNNGAEI 40 (99)
T ss_dssp HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHCCCEE
Confidence 456778899999999999975
No 36
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus}
Probab=28.32 E-value=40 Score=25.72 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCeEEEEeceeEeeccccc---------hhhhccccCcceecC
Q psy18081 25 PEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAVSILLMSMIQ---------NSQTDLFNSDVIWQP 82 (82)
Q Consensus 25 lDK~~Gi~~L~~Aie~I~~~I~~~gG~~~Vk~~PkvVse~d~~---------~l~~~~~~~~~~~~~ 82 (82)
.+....++.+-+|+..+ -.-..|-+.+...|+.++.=..+ +.=++||..+|||.|
T Consensus 223 ~~~~~~~~~v~~A~~~L---~~G~~Gpy~Lvlsp~~y~~L~~~~~~tG~~~~e~i~~lv~g~Ii~sP 286 (345)
T 2e0z_A 223 DNPEEALNDLMNALQEA---SNASAGPFGLIINPKRYAKLLKIYEKSGKMLVEVLKEIFRGGIIVTL 286 (345)
T ss_dssp CSHHHHHHHHHHHHHHH---HTTCCSCEEEEECHHHHHHHCSBCSTTSCBHHHHHHHHCTTEEEECT
T ss_pred cchhHHHHHHHHHHHHH---hccCCCCcEEEECHHHHHHHhcccCCCCccHHHHHHHHhCCCEEEcc
Confidence 44577778888887777 44577999999999876543311 112348888899987
No 37
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=28.31 E-value=38 Score=19.37 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=13.5
Q ss_pred HHHHHHHhhcCCeEEEE
Q psy18081 39 DTIKAKIEQLGGVFQVQ 55 (82)
Q Consensus 39 e~I~~~I~~~gG~~~Vk 55 (82)
+.+++.|++.||.+.-.
T Consensus 24 ~~l~~~i~~~GG~~~~~ 40 (92)
T 4id3_A 24 LQLHEMIVLHGGKFLHY 40 (92)
T ss_dssp HHHHHHHHHTTCEEESS
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 45788999999998643
No 38
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=27.44 E-value=57 Score=20.52 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhcCCeEE
Q psy18081 32 KALQEAIDTIKAKIEQLGGVFQ 53 (82)
Q Consensus 32 ~~L~~Aie~I~~~I~~~gG~~~ 53 (82)
+-+...++.+.+.|++.||...
T Consensus 23 e~~~~~v~~~~~~i~~~Gg~i~ 44 (110)
T 2j5a_A 23 EEMKKKFEQVKEFIKQKGGEIL 44 (110)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEE
Confidence 4467788999999999999763
No 39
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=27.14 E-value=61 Score=27.39 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=29.6
Q ss_pred CeEEEEeeeCC-HHHHHHHHHHHHHHHHHHHhhcCCeEEEE
Q psy18081 16 PLYVMTTVTPE-KADGLKALQEAIDTIKAKIEQLGGVFQVQ 55 (82)
Q Consensus 16 PlYvltt~tlD-K~~Gi~~L~~Aie~I~~~I~~~gG~~~Vk 55 (82)
.+|+.+..-++ +++|+.++-+|+..+....+..+....|.
T Consensus 332 ~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vv 372 (725)
T 3nb0_A 332 TLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVV 372 (725)
T ss_dssp EEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred eeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEE
Confidence 34555545555 89999999999999999887766555444
No 40
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.05 E-value=32 Score=22.95 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=11.3
Q ss_pred HHHHHhhcCCeEEEE
Q psy18081 41 IKAKIEQLGGVFQVQ 55 (82)
Q Consensus 41 I~~~I~~~gG~~~Vk 55 (82)
-++.||+.||++.+.
T Consensus 133 A~ekIeaAGG~v~~~ 147 (148)
T 2zkr_l 133 AEEKIKSVGGACVLV 147 (148)
T ss_dssp HHHHHHHTTCEEEEC
T ss_pred HHHHHHHcCCEEEec
Confidence 456788899998753
No 41
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=26.68 E-value=47 Score=23.99 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Q psy18081 25 PEKADGLKALQEAIDTIKAKIEQ 47 (82)
Q Consensus 25 lDK~~Gi~~L~~Aie~I~~~I~~ 47 (82)
.|-..|+..|+.+|+.|+..+..
T Consensus 167 de~~rG~raLe~~i~~I~~el~~ 189 (199)
T 3fyq_A 167 DEHTRGTRAMEATVEAISQEIRA 189 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHH
Confidence 45678999999999999998865
No 42
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=26.62 E-value=1.2e+02 Score=18.92 Aligned_cols=34 Identities=6% Similarity=-0.043 Sum_probs=22.4
Q ss_pred CeEEEEeeeCCHHHHHHHHHHHHHHHHHHHhhcC
Q psy18081 16 PLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLG 49 (82)
Q Consensus 16 PlYvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~g 49 (82)
|+..+...+.|.+..-+++++..+.|++.+...|
T Consensus 68 P~irvy~Ea~~~~~~~~~~~~~~~~i~~~~~~~~ 101 (112)
T 1wjw_A 68 DIVRVYAEANSQESADRLAYEVSLLVFQLAGGIG 101 (112)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred cEEEEEEEECCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6666666777877666667766666666654443
No 43
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=26.10 E-value=29 Score=20.32 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhcCCeE
Q psy18081 32 KALQEAIDTIKAKIEQLGGVF 52 (82)
Q Consensus 32 ~~L~~Aie~I~~~I~~~gG~~ 52 (82)
+.+++|.+.|.+.+.+.+|.|
T Consensus 61 ~~v~~A~~~I~~~i~~~~g~~ 81 (82)
T 1zzk_A 61 DQIQNAQYLLQNSVKQYSGKF 81 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 467889999999998866543
No 44
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=25.81 E-value=1.1e+02 Score=18.38 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=27.1
Q ss_pred CCeEEEEeee-CCHHHHHHHHHHHHHHHHHHHhhcCCeEEEEece
Q psy18081 15 PPLYVMTTVT-PEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAV 58 (82)
Q Consensus 15 pPlYvltt~t-lDK~~Gi~~L~~Aie~I~~~I~~~gG~~~Vk~~P 58 (82)
.|-|++...+ .|. +. +.+=.+.....++++||+|.+...+
T Consensus 3 m~aY~i~~~~v~d~-e~---y~~Y~~~~~~~l~~~GG~~l~rg~~ 43 (94)
T 3lo3_A 3 ATAYIIVGLTPKDA-EK---LQQYGARVASTLAKYSGEVLVKGSV 43 (94)
T ss_dssp CCEEEEEEEEECCH-HH---HHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred ccEEEEEEEEECCH-HH---HHHHHHHHHHHHHHcCCEEEEEccc
Confidence 3567765443 443 33 4556666778899999999999833
No 45
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=24.51 E-value=47 Score=20.55 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhcCCeE
Q psy18081 32 KALQEAIDTIKAKIEQLGGVF 52 (82)
Q Consensus 32 ~~L~~Aie~I~~~I~~~gG~~ 52 (82)
+-+..+++.+++.|++.||..
T Consensus 16 e~~~~~~~~~~~~i~~~gg~i 36 (100)
T 3r8n_F 16 EQVPGMIERYTAAITGAEGKI 36 (100)
T ss_dssp THHHHHHHHHHHHHHTTTCBC
T ss_pred HHHHHHHHHHHHHHHHCCCEE
Confidence 467788999999999999975
No 46
>2otm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.85A {Shewanella oneidensis} SCOP: d.79.1.1
Probab=24.01 E-value=81 Score=20.78 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeE-----EEEeceeEeeccc
Q psy18081 28 ADGLKALQEAIDTIKAKIEQLGGVF-----QVQMAVSILLMSM 65 (82)
Q Consensus 28 ~~Gi~~L~~Aie~I~~~I~~~gG~~-----~Vk~~PkvVse~d 65 (82)
+.+-+.-++|++.|...+++.||++ .||+--.+.+..|
T Consensus 63 ~~~~~Qa~~~~~Ni~a~L~~ag~~l~~~~~VVk~tvyv~d~~d 105 (154)
T 2otm_A 63 SEGYAACRLATLNAIAQLKQACGELSRIKQIYRLEGVLNVHQS 105 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSGGGCCEEEEEEEEECBCTT
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCccccCcEEEEEEEECCcHH
Confidence 4567889999999999999999987 6777777665443
No 47
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=23.90 E-value=36 Score=22.25 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=23.7
Q ss_pred EEEEeeeCCHHHHHHHHHHHHHHHHHHHhhcCCeE
Q psy18081 18 YVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVF 52 (82)
Q Consensus 18 Yvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~ 52 (82)
-.++.+|.... .+++|++|++.+.+........|
T Consensus 63 ~~lrIqT~~~~-p~eaL~~al~~L~~~~~~l~~~f 96 (115)
T 1xpp_A 63 PQIYVRVKSGK-PQSAIKRAVRKLSKLYEDLGTQF 96 (115)
T ss_dssp CEEEEEESSSC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665555 89999999998887766544433
No 48
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=23.76 E-value=74 Score=19.07 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCe
Q psy18081 31 LKALQEAIDTIKAKIEQLGGV 51 (82)
Q Consensus 31 i~~L~~Aie~I~~~I~~~gG~ 51 (82)
|+-|.+--+.++..|+..||-
T Consensus 27 ieelkkkweelkkkieelggg 47 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELGGG 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 566777788888889887763
No 49
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0
Probab=23.41 E-value=87 Score=20.26 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=25.2
Q ss_pred eCCHHHHHHHHHHHHHHHHHHHhhcCCeE
Q psy18081 24 TPEKADGLKALQEAIDTIKAKIEQLGGVF 52 (82)
Q Consensus 24 tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~ 52 (82)
.++-++=+.+|+.-.+.+.+.|+++||..
T Consensus 26 ~~~~~~~~~~l~~~~~~~~~~i~~~~G~v 54 (198)
T 3r5g_A 26 ELEAEALTDLLNNYLNEMSKIALKYGGTI 54 (198)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 34668888999999999999999999965
No 50
>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}
Probab=23.34 E-value=80 Score=20.46 Aligned_cols=56 Identities=13% Similarity=0.037 Sum_probs=37.5
Q ss_pred eEEEEeeeCCHHHHHHHHHHHHHHHHHHHhhcCCeEEEEeceeEeeccccchhhhccccC
Q psy18081 17 LYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAVSILLMSMIQNSQTDLFNS 76 (82)
Q Consensus 17 lYvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~~Vk~~PkvVse~d~~~l~~~~~~~ 76 (82)
.||.-..-.=-..-.+.|++++..+++. .|+.+.|...|..- ..+-.+...++|+.
T Consensus 19 ~~V~D~a~~Ls~~~~~~L~~~l~~~e~~---t~~qi~Vv~v~~l~-g~~~~~~A~~~f~~ 74 (157)
T 2kw7_A 19 RLVTDEAGLLSNAQEEVMNGRLRAIRSS---HAVEFAVVTLPSIG-DAPLEDFTLKLARQ 74 (157)
T ss_dssp TCEEECSSCSCHHHHHHHHHHHHHHHHH---TCCEEEEEEESBCT-TCCHHHHHHHHHHH
T ss_pred ceEEcccccCCHHHHHHHHHHHHHHHHh---hCCeEEEEEEcCCC-CCCHHHHHHHHHHH
Confidence 3777643333345567888888877654 78999998777743 34556677788864
No 51
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=22.63 E-value=1.9e+02 Score=20.19 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=23.5
Q ss_pred CeEEEEeeeCCHHHHHHHHHHHHHHHHHH
Q psy18081 16 PLYVMTTVTPEKADGLKALQEAIDTIKAK 44 (82)
Q Consensus 16 PlYvltt~tlDK~~Gi~~L~~Aie~I~~~ 44 (82)
..+++..-.+...+|+..|-+|+..+.+.
T Consensus 243 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~ 271 (438)
T 3c48_A 243 TKVVAFVGRLQPFKGPQVLIKAVAALFDR 271 (438)
T ss_dssp SEEEEEESCBSGGGCHHHHHHHHHHHHHH
T ss_pred CcEEEEEeeecccCCHHHHHHHHHHHHhh
Confidence 45677777889999999999999887654
No 52
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=22.54 E-value=53 Score=19.69 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=16.0
Q ss_pred HHHHHHHHhhcCCeEEEEece
Q psy18081 38 IDTIKAKIEQLGGVFQVQMAV 58 (82)
Q Consensus 38 ie~I~~~I~~~gG~~~Vk~~P 58 (82)
+..+++.++.+||++.+...|
T Consensus 116 L~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 116 LALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp CHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEeecC
Confidence 445777888999999887643
No 53
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}
Probab=22.36 E-value=1.2e+02 Score=20.08 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=24.9
Q ss_pred eCCHHHHHHHHHHHHHHHHHHHhhcCCeE
Q psy18081 24 TPEKADGLKALQEAIDTIKAKIEQLGGVF 52 (82)
Q Consensus 24 tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~ 52 (82)
.++-++-+.+|++....+.+.|.++||..
T Consensus 31 ~~~~~~~~~~l~~~~~~~~~~i~~~~G~v 59 (208)
T 2w01_A 31 GLNPEEVVKVLNIYFGKMADVITHHGGTI 59 (208)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 35567788999999999999999999965
No 54
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=22.32 E-value=49 Score=19.33 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=13.3
Q ss_pred HHHHHHHhhcCCeEEE
Q psy18081 39 DTIKAKIEQLGGVFQV 54 (82)
Q Consensus 39 e~I~~~I~~~gG~~~V 54 (82)
+.++..|+++||.|..
T Consensus 29 ~~L~~~i~~~GG~~~~ 44 (97)
T 2ebw_A 29 EELRKLMMLHGGQYHV 44 (97)
T ss_dssp HHHHHHHHHTTCEECS
T ss_pred HHHHHHHHHcCCEEee
Confidence 5688899999999854
No 55
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=21.79 E-value=78 Score=21.02 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEE
Q psy18081 33 ALQEAIDTIKAKIEQLGGVFQVQ 55 (82)
Q Consensus 33 ~L~~Aie~I~~~I~~~gG~~~Vk 55 (82)
+|++|+. .|...||+|.|.
T Consensus 17 il~~~LD----~I~d~GG~F~I~ 35 (118)
T 3mgj_A 17 ILPKVFD----KILDMGGDYKVL 35 (118)
T ss_dssp HHHHHHH----HHHHTTCEEEEE
T ss_pred hHHHHHH----HHHhcCCCEEEE
Confidence 3555554 567889999987
No 56
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=21.51 E-value=50 Score=21.59 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=24.6
Q ss_pred eEEEEeeeCCHHHHHHHHHHHHHHHHHHHhhcCCeE
Q psy18081 17 LYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVF 52 (82)
Q Consensus 17 lYvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~ 52 (82)
.-.++.+|.....-+++|++|++.+.+........|
T Consensus 70 ~~~lrIqT~~~~~p~eaL~~a~~~L~~~~~~l~~~f 105 (120)
T 1twf_K 70 RFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNF 105 (120)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666776555678999999998877665544333
No 57
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=21.48 E-value=67 Score=19.05 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhcCCeE
Q psy18081 32 KALQEAIDTIKAKIEQLGGVF 52 (82)
Q Consensus 32 ~~L~~Aie~I~~~I~~~gG~~ 52 (82)
+.+++|.+.|.+.+.+..|.|
T Consensus 68 e~v~~A~~~I~~~i~e~~g~~ 88 (89)
T 1j5k_A 68 DQIQNAQYLLQNSVKQYSGKF 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhhhcCC
Confidence 467889999999998866654
No 58
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=21.27 E-value=1.4e+02 Score=17.63 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=27.5
Q ss_pred eeCCHHHHHHHHHHHHHHHHHHHhhcC-------CeEEEEece
Q psy18081 23 VTPEKADGLKALQEAIDTIKAKIEQLG-------GVFQVQMAV 58 (82)
Q Consensus 23 ~tlDK~~Gi~~L~~Aie~I~~~I~~~g-------G~~~Vk~~P 58 (82)
+.+.|.+--.+|+.-++.|.+.+.+-+ |.|.++.-+
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gfG~F~v~~r~ 56 (90)
T 2o97_B 14 ADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERA 56 (90)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEECCC
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHCCCeEEECCCEEEEEEEec
Confidence 346788888899999999999987743 888887643
No 59
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V
Probab=21.23 E-value=40 Score=23.06 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=10.6
Q ss_pred HHHHhhcCCeEEE
Q psy18081 42 KAKIEQLGGVFQV 54 (82)
Q Consensus 42 ~~~I~~~gG~~~V 54 (82)
++.||+.||++.+
T Consensus 135 ~ekIe~aGG~~~~ 147 (149)
T 3o58_Y 135 EEKIRAAGGVVEL 147 (149)
T ss_dssp HHHHGGGSCEEEC
T ss_pred HHHHHHcCCEEEE
Confidence 4678999999875
No 60
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=20.66 E-value=1.4e+02 Score=17.52 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.1
Q ss_pred eeCCHHHHHHHHHHHHHHHHHHHhhcC-------CeEEEEece
Q psy18081 23 VTPEKADGLKALQEAIDTIKAKIEQLG-------GVFQVQMAV 58 (82)
Q Consensus 23 ~tlDK~~Gi~~L~~Aie~I~~~I~~~g-------G~~~Vk~~P 58 (82)
+.+.|.+--.+|+.-++.|.+.+.+-+ |.|.++.-+
T Consensus 14 ~~ls~~~~~~~l~~~~~~i~~~L~~g~~V~l~gfG~F~v~~r~ 56 (90)
T 1mul_A 14 AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRA 56 (90)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEEC
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCeEEEEEEec
Confidence 346788888899999999999987743 888887643
No 61
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=20.22 E-value=53 Score=25.18 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=26.9
Q ss_pred ceEEEEecCCeEEEEeeeCCHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecee
Q psy18081 7 PIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMAVS 59 (82)
Q Consensus 7 ~IkIkLIApPlYvltt~tlDK~~Gi~~L~~Aie~I~~~I~~~gG~~~Vk~~Pk 59 (82)
.++|.+++||-|.+. .+.++..++..++.|+.+.+...|.
T Consensus 177 G~~v~~~~P~~~~p~-------------~~~~~~~~~~a~~~G~~v~~~~d~~ 216 (355)
T 4a8p_A 177 GMNFVHFGPEGFQLN-------------EEHQAKLAKNCEVSGGSFLVTDDAS 216 (355)
T ss_dssp TCEEEEECCTTSSCC-------------HHHHHHHHHHHHHHSCEEEEECCGG
T ss_pred CCEEEEECCCccCCC-------------HHHHHHHHHHHHHcCCeEEEECCHH
Confidence 578999999988752 1233444555677888887765554
No 62
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=20.18 E-value=83 Score=20.64 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=15.0
Q ss_pred HHHHHHHHhhcCCeEEEEece
Q psy18081 38 IDTIKAKIEQLGGVFQVQMAV 58 (82)
Q Consensus 38 ie~I~~~I~~~gG~~~Vk~~P 58 (82)
+..++..++.+||++.+...|
T Consensus 215 L~i~~~iv~~~gG~i~v~s~~ 235 (258)
T 2c2a_A 215 LAITKEIVELHGGRIWVESEV 235 (258)
T ss_dssp HHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 344667777889998887654
No 63
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=20.04 E-value=86 Score=19.95 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=15.1
Q ss_pred HHHHHHHHhhcCCeEEEEec
Q psy18081 38 IDTIKAKIEQLGGVFQVQMA 57 (82)
Q Consensus 38 ie~I~~~I~~~gG~~~Vk~~ 57 (82)
+..++..++.+||.+.+...
T Consensus 192 L~i~~~i~~~~gG~i~~~~~ 211 (244)
T 3d36_A 192 MMVVYRIIESMNGTIRIESE 211 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEec
Confidence 45567777888999988765
Done!