RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18081
(82 letters)
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo
sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Length = 308
Score = 71.5 bits (175), Expect = 9e-17
Identities = 36/56 (64%), Positives = 41/56 (73%)
Query: 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMA 57
STE MPIKINLIAPP YVMTT T E+ +GL L +A+ IK KIE+ GVF VQM
Sbjct: 216 STENMPIKINLIAPPRYVMTTTTLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQME 271
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical
domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Length = 188
Score = 68.7 bits (168), Expect = 2e-16
Identities = 9/56 (16%), Positives = 21/56 (37%)
Query: 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMA 57
+ + +K + P Y + P+ + L+ + I I++ GG +
Sbjct: 121 KEKDVEVKFTYLGAPRYRIDITAPDYYKAEEVLESIAEEILRVIKEAGGEATLLRK 176
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2,
initiation factor 2 alpha subunit, initiation factor 2
beta subunit; 2.80A {Sulfolobus solfataricus} PDB:
2aho_B 3v11_B*
Length = 266
Score = 69.2 bits (169), Expect = 4e-16
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56
+ IKI I P Y + V + +AL + I + ++ V
Sbjct: 211 YESLLNIKIYTIGAPRYRVDVVGTNPKEASEALNQIISNLIKIGKEENVDISVVK 265
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA
complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus
horikoshii} PDB: 1yz6_A
Length = 275
Score = 68.5 bits (167), Expect = 7e-16
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 2 STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMA 57
+ + +K P Y + P+ + L++ + I I+Q GG +
Sbjct: 208 KEKDIEVKFTYQGAPRYRIDITAPDYYKAEEVLEDIAEEILRVIKQAGGEATLLRK 263
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.003
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 15/44 (34%)
Query: 4 EKMPIKINLIAP-PLYVMTTVTPEKADGLKALQEAIDTIKAKIE 46
EK +K L A LY + A L IKA +E
Sbjct: 18 EKQALK-KLQASLKLY-----ADDSAPAL--------AIKATME 47
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of
translation, GTP-binding, nucleotide-binding, protein
biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus}
SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Length = 93
Score = 28.3 bits (63), Expect = 0.13
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 8 IKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQ 55
IKI I P Y + V + +AL + I + ++ V
Sbjct: 44 IKIYTIGAPRYRVDVVGTNPKEASEALNQIISNLIKIGKEENVDISVV 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.19
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 24/93 (25%)
Query: 8 IKINLI-APPLYVMTTVT--PEKADGLKALQEAIDTIKA-------KIE--QLGGVFQVQ 55
++I+L+ V V+ P+ L L + KA +I + F +
Sbjct: 366 VEISLVNGAKNLV---VSGPPQ---SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 56 ---MAV---SILLMSMIQNSQTDLFNSDVIWQP 82
+A S LL+ DL ++V +
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 25.7 bits (57), Expect = 1.7
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 1 MSTEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQ 55
+ + + L + LY+ T E+ D + + A+ GGV +Q
Sbjct: 16 LYFQGHMHESRLASARLYLCTDARRERGDLAQFAEAALA---------GGVDIIQ 61
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium
tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Length = 407
Score = 24.8 bits (55), Expect = 4.2
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 28 ADGLKALQEAIDTIKAKIEQLGGVFQV 54
+ I+ K + LGGV +
Sbjct: 199 KAAEADMIAQIEAAKKDGDTLGGVVEA 225
>1yjg_A Surface protein VSPA; helical bundle, immune system; 2.22A
{Borrelia turicatae}
Length = 158
Score = 24.5 bits (53), Expect = 4.6
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 18 YVMTTVTPEKADGLKALQEAIDTIKAKIE 46
Y + + K L+ D +K KI
Sbjct: 55 YSVISAVDTKLASLEKKVGISDDLKGKIT 83
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET:
RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620}
PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*
Length = 600
Score = 24.8 bits (53), Expect = 4.8
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 21 TTVTPEKADGLKALQEAIDTIKAK 44
D + LQ AID + +
Sbjct: 54 VIQPGPNVDSRQYLQAAIDYVSSN 77
>2ga0_A Surface protein VSPA; helical bundle, NI(II) binding sites,
immune system; 2.70A {Borrelia turicatae}
Length = 181
Score = 24.2 bits (52), Expect = 5.0
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 18 YVMTTVTPEKADGLKALQEAIDTIKAKIE 46
Y + + K L+ D +K KI
Sbjct: 66 YSVISAVDTKLASLEKKVGISDDLKGKIT 94
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A
{Bifidobacterium longum subsp}
Length = 398
Score = 24.4 bits (54), Expect = 5.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 28 ADGLKALQEAIDTIKAKIEQLGGVFQV 54
+ + E I+ K + LGGV +V
Sbjct: 202 KEAEVRIIERINEAKKAADTLGGVIEV 228
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis
thaliana} SCOP: a.93.1.1 PDB: 1qo4_A*
Length = 306
Score = 24.1 bits (53), Expect = 6.1
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 36 EAIDTIKAKIEQ 47
+D IK +E
Sbjct: 79 NVVDNIKTALEN 90
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics,
PSI, protein structure initiative, midwest center for
structural genomics; 2.05A {Aquifex aeolicus} SCOP:
d.258.1.1
Length = 401
Score = 24.0 bits (53), Expect = 6.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 28 ADGLKALQEAIDTIKAKIEQLGGVFQV 54
+ + + ID +K K E LGGVF+V
Sbjct: 207 PEKDEEFKTYIDEVKEKGESLGGVFEV 233
>3quf_A Extracellular solute-binding protein, family 1; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum
subsp}
Length = 414
Score = 24.4 bits (53), Expect = 6.2
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 22 TVTPEKADGLKALQEAIDTIKA 43
++ + A KAL T+K
Sbjct: 394 QISAKDA--AKALDAKWATLKG 413
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,;
2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1
Length = 155
Score = 24.0 bits (53), Expect = 6.4
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 27 KADGLKALQEAIDTIKAKIE----QLGGV-FQVQMAV 58
D ++ ++A+ + +E ++GG +QV + V
Sbjct: 54 GKDPMEVFEQALKNVMPVLEVRARRVGGANYQVPVEV 90
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate,
anti-infective, lyase; HET: FMN EPS; 2.00A
{Streptococcus pneumoniae} SCOP: d.258.1.1
Length = 388
Score = 24.0 bits (53), Expect = 6.5
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 28 ADGLKALQEAIDTIKAKIEQLGGVFQV 54
+ + +++ ID IK + +GGV +
Sbjct: 194 QEREQEIKDYIDQIKRDGDTIGGVVET 220
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics,
protein structure initiative, MCSG; 1.60A {Thermoplasma
acidophilum} SCOP: d.74.3.2
Length = 115
Score = 23.7 bits (51), Expect = 7.9
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 15 PPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQM 56
P +YV A++ A+ + E LG FQ +
Sbjct: 63 PQIYVRVK----SGKPQSAIKRAVRKLSKLYEDLGTQFQKEF 100
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 24.0 bits (52), Expect = 8.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 25 PEKADGLKALQEAIDTIKAKIE 46
E L+ +Q+ I+TI+ I
Sbjct: 854 KENGSQLRCVQQTIETIEENIG 875
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA
complex, ribonucleoprotein, ribosomal protein,
RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
{Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U
1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K*
3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 2qal_G* 1p6g_G
1p87_G 2aw7_G 2avy_G ...
Length = 179
Score = 23.7 bits (52), Expect = 8.8
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 27 KADGLKALQEAIDTIKAKIE----QLGGV-FQVQMAV 58
L+A + A++ ++ +E ++GG +QV + V
Sbjct: 55 GKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEV 91
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus
thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G*
1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G
1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G
2zm6_G 3fic_G* 3mr8_G ...
Length = 151
Score = 23.6 bits (52), Expect = 8.9
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 27 KADGLKALQEAIDTIKAKIE----QLGGV-FQVQMAV 58
+ LK ++A++ +K ++E ++GG +QV M V
Sbjct: 50 GQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEV 86
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 23.6 bits (51), Expect = 9.2
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 25 PEKADGLKALQEAIDTIKAKIE 46
E L+ +Q+ I+TI+ I
Sbjct: 371 KENGSQLRCVQQTIETIEENIG 392
>2idb_A 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: 1PE; 2.90A {Escherichia coli} SCOP: b.45.1.3
d.333.1.1
Length = 505
Score = 23.6 bits (51), Expect = 9.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 4 EKMPIKINLIAPPLYVMTTVTP 25
E+ P+ + L A P ++ VTP
Sbjct: 213 ERFPVSVALGADPATILGAVTP 234
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.361
Gapped
Lambda K H
0.267 0.0816 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,148,288
Number of extensions: 57923
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 34
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)