RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18081
         (82 letters)



>d1q8ka2 d.58.51.1 (A:186-302) eIF-2-alpha, C-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 117

 Score = 72.5 bits (178), Expect = 4e-19
 Identities = 36/56 (64%), Positives = 41/56 (73%)

Query: 2  STEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMA 57
          STE MPIKINLIAPP YVMTT T E+ +GL  L +A+  IK KIE+  GVF VQM 
Sbjct: 33 STENMPIKINLIAPPRYVMTTTTLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQME 88


>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain
          {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 89

 Score = 57.1 bits (138), Expect = 3e-13
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 3  TEKMPIKINLIAPPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQV 54
             + IKI  I  P Y +  V     +  +AL + I  +    ++      V
Sbjct: 37 ESLLNIKIYTIGAPRYRVDVVGTNPKEASEALNQIISNLIKIGKEENVDISV 88


>d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE
           {Escherichia coli [TaxId: 562]}
          Length = 149

 Score = 24.9 bits (54), Expect = 1.1
 Identities = 4/30 (13%), Positives = 13/30 (43%)

Query: 16  PLYVMTTVTPEKADGLKALQEAIDTIKAKI 45
            +  +   +  ++   +A Q  +D +K + 
Sbjct: 92  EIVFVGVTSAHRSSAFEAGQFIMDYLKTRA 121


>d2yzca1 d.96.1.4 (A:11-141) Urate oxidase (uricase) {Arthrobacter
          globiformis [TaxId: 1665]}
          Length = 131

 Score = 24.3 bits (53), Expect = 1.5
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 54 VQMAVSILLMSMIQNSQTDLFNSDVI 79
            + V+  L    + + T   N+ V+
Sbjct: 30 QDLNVTSQLRGDFEAAHTAGDNAHVV 55


>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 152

 Score = 23.8 bits (51), Expect = 2.8
 Identities = 4/19 (21%), Positives = 13/19 (68%)

Query: 31  LKALQEAIDTIKAKIEQLG 49
           ++ L+ +   ++ ++E+LG
Sbjct: 133 IEKLRNSAKILRERLEELG 151


>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 156

 Score = 23.4 bits (50), Expect = 4.0
 Identities = 7/47 (14%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 26 EKADGLKALQEAIDTIKAKIEQLGGVFQVQMAVSILLMSMIQNSQTD 72
          +++ G+   ++A+  +KA  ++     +  + VS   + ++     D
Sbjct: 39 DESRGMHICEDAVKRLKATGKKA---VKAVLWVSADGLRVVDEKTKD 82


>d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate
           synthase MenF {Escherichia coli [TaxId: 562]}
          Length = 428

 Score = 23.6 bits (50), Expect = 4.1
 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 5/44 (11%)

Query: 14  APPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLGGVFQVQMA 57
                      P+K    + ++ A  TI       G + +V +A
Sbjct: 155 LHLTTTREQHWPDKTGWTQLIELATKTIAE-----GELDKVVLA 193


>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda
           {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 293

 Score = 22.8 bits (47), Expect = 8.6
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 6/35 (17%)

Query: 15  PPLYVMTTVTPEKADGLKALQEAIDTIKAKIEQLG 49
           PP+       P   +  + L + ++ I+AK+ +L 
Sbjct: 261 PPI------FPLDDEEERQLIKKVEGIRAKLVELK 289


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 267,336
Number of extensions: 9664
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 12
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)