BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18082
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24574|UBPE_DROME Ubiquitin carboxyl-terminal hydrolase 64E OS=Drosophila
melanogaster GN=Ubp64E PE=1 SV=2
Length = 1556
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 63/83 (75%), Gaps = 7/83 (8%)
Query: 104 DVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE 163
D DEGID+S S+T + GPY+YELF+IMIHSGSASGGHYYAYIK+F +E
Sbjct: 680 DEDEGIDMS-------SSTSKSAKQGSGPYLYELFAIMIHSGSASGGHYYAYIKDFDNNE 732
Query: 164 WYCFNDQSVTRITDEDIHKSYGG 186
W+CFNDQ+VT IT EDI +S+GG
Sbjct: 733 WFCFNDQNVTSITQEDIQRSFGG 755
>sp|A1A5G2|UBP47_XENTR Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus tropicalis
GN=usp47 PE=2 SV=1
Length = 1354
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 93/180 (51%), Gaps = 21/180 (11%)
Query: 18 LAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSP--SSEPQYTFRLDYGVRKGAESNQA 75
L Q K DF T+ I + D M SP E + + + D GAE
Sbjct: 371 LLTLQLKRFDFDYTSMHRIKLNDRMTFPDELDMSPFIDVEDEKSPQTDSCTDSGAE---- 426
Query: 76 STNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVY 135
+E C +Q+ S + VDEGI + E S + S++ K +Y
Sbjct: 427 ----NEGSCHSDQMSNDFST------DDAVDEGICL---ETNSNIEKLNKSVSEKNS-LY 472
Query: 136 ELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPA-RGYYS 194
ELFS+M+HSGSA+GGHYYA IK+F+ +WY FNDQ V+RIT EDI K+YGG RGYYS
Sbjct: 473 ELFSVMVHSGSAAGGHYYACIKSFADGQWYSFNDQHVSRITQEDIKKTYGGSTGNRGYYS 532
>sp|Q5U252|UBP47_XENLA Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus laevis GN=usp47
PE=2 SV=1
Length = 1350
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 92/180 (51%), Gaps = 21/180 (11%)
Query: 18 LAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSP--SSEPQYTFRLDYGVRKGAESNQA 75
L Q K DF T+ I + D M SP E + + + D GAE
Sbjct: 370 LLTLQLKRFDFDYTSMHRIKLNDRMTFPDELDMSPFIDMEDEKSPQTDSCTDSGAE---- 425
Query: 76 STNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVY 135
+E C +Q+ S + VDEGI + E S + S+ K +Y
Sbjct: 426 ----NEGSCHSDQMSNDFST------DDAVDEGICL---ETNSNIEKLNKSVAEKNS-LY 471
Query: 136 ELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPA-RGYYS 194
ELFS+M+HSGSA+GGHYYA IK+F+ +WY FNDQ V+RIT EDI K+YGG RGYYS
Sbjct: 472 ELFSVMVHSGSAAGGHYYACIKSFADGQWYSFNDQHVSRITQEDIKKTYGGATGNRGYYS 531
>sp|Q96K76|UBP47_HUMAN Ubiquitin carboxyl-terminal hydrolase 47 OS=Homo sapiens GN=USP47
PE=1 SV=3
Length = 1375
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 86/169 (50%), Gaps = 19/169 (11%)
Query: 18 LAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKG--AESNQA 75
L Q K DF TT I + D M P TF +D K ES
Sbjct: 385 LLTLQLKRFDFDYTTMHRIKLNDRMTF-------PEELDMSTF-IDVEDEKSPQTESCTD 436
Query: 76 STNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVY 135
S ++E C +Q+ SN + VDEGI + E S + S K +Y
Sbjct: 437 SGAENEGSCHSDQMSNDFSN------DDGVDEGICL---ETNSGTEKISKSGLEKNSLIY 487
Query: 136 ELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSY 184
ELFS+M+HSGSA+GGHYYA IK+FS ++WY FNDQ V+RIT EDI K++
Sbjct: 488 ELFSVMVHSGSAAGGHYYACIKSFSDEQWYSFNDQHVSRITQEDIKKTH 536
>sp|Q8BY87|UBP47_MOUSE Ubiquitin carboxyl-terminal hydrolase 47 OS=Mus musculus GN=Usp47
PE=1 SV=2
Length = 1376
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 84/169 (49%), Gaps = 19/169 (11%)
Query: 18 LAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKG--AESNQA 75
L Q K DF TT I + D M P TF +D K ES
Sbjct: 385 LLTLQLKRFDFDYTTMHRIKLNDRMSF-------PEELDMSTF-IDIEDEKSPQTESCTD 436
Query: 76 STNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVY 135
S ++E C +Q+ S + VDEGI + E S S K +Y
Sbjct: 437 SGAENEGSCHSDQMSNDFST------DDAVDEGICL---ESSSGSEKISKPGLEKNSLMY 487
Query: 136 ELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSY 184
ELFS+M+HSGSA+GGHYYA IK+FS D+WY FNDQ V+RIT EDI K++
Sbjct: 488 ELFSVMVHSGSAAGGHYYACIKSFSDDQWYSFNDQHVSRITQEDIKKTH 536
>sp|E1C1R4|UBP47_CHICK Ubiquitin carboxyl-terminal hydrolase 47 OS=Gallus gallus GN=USP47
PE=3 SV=1
Length = 1375
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 84/168 (50%), Gaps = 19/168 (11%)
Query: 18 LAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKG--AESNQA 75
L Q K DF TT I + D M E + +D K ES
Sbjct: 384 LLTLQLKRFDFDYTTMHRIKLNDRMTF--------PEELDMSIFIDVEDEKSPQTESCTD 435
Query: 76 STNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVY 135
S ++E C +Q+ SN + VDEGI + E S + + K +Y
Sbjct: 436 SGAENEGSCHSDQMSNDFSN------DDGVDEGICL---ESNSAAERIAKVGSEKNSLLY 486
Query: 136 ELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
ELFS+M+HSGSA+GGHYYA IK+FS D+WY FNDQ V++IT EDI K+
Sbjct: 487 ELFSVMVHSGSAAGGHYYACIKSFSDDQWYSFNDQHVSKITQEDIKKT 534
>sp|Q9UMW8|UBP18_HUMAN Ubl carboxyl-terminal hydrolase 18 OS=Homo sapiens GN=USP18 PE=1
SV=1
Length = 372
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYG 185
YELF+++ H G A GHY YI+N +W+CFND ++ ++ EDI +YG
Sbjct: 302 YELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYG 352
>sp|Q3LFD5|UBP41_HUMAN Putative ubiquitin carboxyl-terminal hydrolase 41 OS=Homo sapiens
GN=USP41 PE=2 SV=2
Length = 358
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYG 185
YELF+++ H G A GHY YI+N +W+CFND ++ ++ EDI +YG
Sbjct: 302 YELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYG 352
>sp|Q9WTV6|UBP18_MOUSE Ubl carboxyl-terminal hydrolase 18 OS=Mus musculus GN=Usp18 PE=2
SV=2
Length = 368
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPAR 190
YELF+++ H G A GHY AYI+N +W+CFND V +T +D+ +YG R
Sbjct: 298 YELFAVIAHVGMADFGHYCAYIRNPVDGKWFCFNDSHVCWVTWKDVQCTYGNHRYR 353
>sp|Q5RE63|UBP18_PONAB Ubl carboxyl-terminal hydrolase 18 OS=Pongo abelii GN=USP18 PE=2
SV=1
Length = 375
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYG 185
+ELF+++ H G A GHY YI+N +W+CFND ++ ++ EDI +YG
Sbjct: 305 FELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYG 355
>sp|P50101|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP15 PE=1
SV=1
Length = 1230
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 107 EGIDIS-HPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWY 165
E ID+S + T D K PYVY L +++HSG S GHYY IK D+WY
Sbjct: 420 ETIDLSPFVDKDVLKKTLDSENKDKNPYVYNLHGVLVHSGDISTGHYYTLIKPGVEDQWY 479
Query: 166 CFNDQSVTRITDEDIHKSYGG 186
F+D+ V R+T + + + G
Sbjct: 480 RFDDERVWRVTKKQVFQENFG 500
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
GN=UBP13 PE=1 SV=1
Length = 1115
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 7/57 (12%)
Query: 134 VYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS----YGG 186
+Y L S+++HSG GGHYYA+I+ +D+WY F+D+ R+T ED+ ++ YGG
Sbjct: 437 LYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDE---RVTKEDVKRALEEQYGG 490
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 7/57 (12%)
Query: 134 VYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS----YGG 186
+Y L S+++HSG GGHYYA+I+ +D+WY F+D+ R+T ED+ ++ YGG
Sbjct: 438 LYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDE---RVTKEDLKRALEEQYGG 491
>sp|Q6ZQ93|UBP34_MOUSE Ubiquitin carboxyl-terminal hydrolase 34 OS=Mus musculus GN=Usp34
PE=1 SV=3
Length = 3582
Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 133 YVYELFSIMIHSGSASGGHYYAYIKN------FSTDEWYCFNDQSVTRITDEDI-HKSYG 185
Y Y+L + +H+G+A GGHYY++I++ + ++WY FND V + + +G
Sbjct: 2183 YEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQLASECFG 2242
Query: 186 GGPARGYYSGFEDKVVDFS 204
G Y DK +DFS
Sbjct: 2243 GEMTTKTYDSVTDKFMDFS 2261
>sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34
PE=1 SV=2
Length = 3546
Score = 56.2 bits (134), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 133 YVYELFSIMIHSGSASGGHYYAYIKN------FSTDEWYCFNDQSVTRITDEDI-HKSYG 185
Y Y+L + +H+G+A GGHYY++I++ + ++WY FND V + + +G
Sbjct: 2146 YEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYKNNKWYLFNDAEVKPFDSAQLASECFG 2205
Query: 186 GGPARGYYSGFEDKVVDFS 204
G Y DK +DFS
Sbjct: 2206 GEMTTKTYDSVTDKFMDFS 2224
>sp|Q9UTT1|UBP21_SCHPO Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp21 PE=3 SV=2
Length = 1129
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 117 PSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRIT 176
P S T D S +VY L +++H G GGHYYA IK W+ F+D VTR T
Sbjct: 451 PYLSETADKS----ESHVYVLHGVLVHGGDLHGGHYYALIKPEKDSNWFKFDDDRVTRAT 506
Query: 177 -DEDIHKSYGGGP---ARGY 192
E + +YGG P A+GY
Sbjct: 507 IKEVLEDNYGGEPAGRAKGY 526
>sp|Q70CQ4|UBP31_HUMAN Ubiquitin carboxyl-terminal hydrolase 31 OS=Homo sapiens GN=USP31
PE=2 SV=2
Length = 1352
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 133 YVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDI 180
Y+Y+L+++ H G+ GGHY AY KN WYCF+D V +++++++
Sbjct: 705 YIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEV 752
>sp|Q5ZM45|UBP48_CHICK Ubiquitin carboxyl-terminal hydrolase 48 OS=Gallus gallus GN=USP48
PE=2 SV=1
Length = 1033
Score = 54.3 bits (129), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 124 DPSMNAK-GPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRI 175
+P M K G YVYEL +++IH G SA GHY A++K+ T EWY FND+ + ++
Sbjct: 322 EPFMEQKNGVYVYELSAVLIHRGVSAYSGHYIAHVKDPQTGEWYKFNDEDIEKM 375
>sp|Q5I043|UBP28_MOUSE Ubiquitin carboxyl-terminal hydrolase 28 OS=Mus musculus GN=Usp28
PE=2 SV=1
Length = 1051
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHK-SYGGGPARGYY 193
Y L ++++H G AS GHY+AYI N W +ND SVT + E++ + SYGG Y
Sbjct: 589 YRLHAVLVHEGQASAGHYWAYIYNQPRQTWLKYNDISVTESSWEELERDSYGGLRNVSAY 648
Query: 194 SGF--EDKVVDFSGTTSEN 210
D + FS S N
Sbjct: 649 CLMYINDNLPHFSAEASSN 667
>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y OS=Homo sapiens
GN=USP9Y PE=1 SV=2
Length = 2555
Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 135 YELFSIMIHSGSASGGHYYAYI-----KNFSTDEWYCFNDQSVTRIT---DEDIHKSYGG 186
Y L +++HSG ASGGHYY+YI K+ TD WY F+D VT DE++ G
Sbjct: 1865 YRLVGVLVHSGQASGGHYYSYIIQRNGKDDQTDHWYKFDDGDVTECKMDDDEEMKNQCFG 1924
Query: 187 GPARG 191
G G
Sbjct: 1925 GEYMG 1929
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
Y+L S++ H G+AS GHY AY +N + WY F+DQSVT +++ + +
Sbjct: 624 YDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNA 672
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 OS=Homo sapiens GN=USP33
PE=1 SV=2
Length = 942
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
Y+L S++ H G+AS GHY AY +N + WY F+DQSVT +++ + +
Sbjct: 657 YDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNA 705
>sp|A6QNM7|UBP33_BOVIN Ubiquitin carboxyl-terminal hydrolase 33 OS=Bos taurus GN=USP33
PE=2 SV=1
Length = 912
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
Y+L S++ H G+AS GHY AY +N + WY F+DQSVT +++ + +
Sbjct: 627 YDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNA 675
>sp|Q5REG5|UBP33_PONAB Ubiquitin carboxyl-terminal hydrolase 33 OS=Pongo abelii GN=USP33
PE=2 SV=1
Length = 914
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
Y+L S++ H G+AS GHY AY +N + WY F+DQSVT +++ + +
Sbjct: 625 YDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNA 673
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
Y+L S++ H G+AS GHY AY +N + WY F+DQSVT +++ + +
Sbjct: 607 YDLLSVICHHGTASSGHYIAYCRNNLNNLWYEFDDQSVTEVSEATVQNA 655
>sp|D3ZJ96|UBP28_RAT Ubiquitin carboxyl-terminal hydrolase 28 OS=Rattus norvegicus
GN=Usp28 PE=2 SV=2
Length = 1083
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHK-SYGG 186
Y L ++++H G AS GHY+AYI N W +ND SVT + E++ + SYGG
Sbjct: 590 YRLHAVLVHEGQASAGHYWAYIYNQPRQIWLKYNDISVTESSWEELERDSYGG 642
>sp|Q96RU2|UBP28_HUMAN Ubiquitin carboxyl-terminal hydrolase 28 OS=Homo sapiens GN=USP28
PE=1 SV=1
Length = 1077
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHK-SYGG 186
Y L ++++H G A+ GHY+AYI N W +ND SVT + E++ + SYGG
Sbjct: 584 YRLHAVLVHEGQANAGHYWAYIYNQPRQSWLKYNDISVTESSWEEVERDSYGG 636
>sp|A5PMR2|UBP33_DANRE Ubiquitin carboxyl-terminal hydrolase 33 OS=Danio rerio GN=usp33
PE=2 SV=1
Length = 897
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
Y+L S++ H G+AS GHY AY +N WY F+DQSVT +++ + +
Sbjct: 612 YDLLSVICHHGTASSGHYIAYCRNELNQLWYEFDDQSVTEVSESCVQNA 660
>sp|Q9FPS2|UBP25_ARATH Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana
GN=UBP25 PE=2 SV=1
Length = 661
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 101 YNGDVDEGIDISHPEPPS---TSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYI 156
+ G +D+ I S + A+KDP Y+LF I++HSG S GHYYAY+
Sbjct: 246 FGGKIDKAISFGEILVLSNFMSKASKDPQPE------YKLFGIIVHSGFSPESGHYYAYV 299
Query: 157 KNFSTDEWYCFNDQSVTRITDEDI 180
K+ S WYC ND V+ T +++
Sbjct: 300 KD-SLGRWYCCNDSFVSLSTLQEV 322
>sp|Q86UV5|UBP48_HUMAN Ubiquitin carboxyl-terminal hydrolase 48 OS=Homo sapiens GN=USP48
PE=1 SV=1
Length = 1035
Score = 51.6 bits (122), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 131 GPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRI 175
G YVYEL +++IH G SA GHY A++K+ + EWY FND+ + ++
Sbjct: 332 GSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKM 377
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2
PE=1 SV=2
Length = 605
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 134 VYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
VY L+++ HSG+ GGHY AY ++ T EW+ FND SVT ++ + S
Sbjct: 540 VYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTS 589
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus
GN=Usp2 PE=1 SV=1
Length = 618
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 134 VYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
VY L+++ HSG+ GGHY AY ++ T EW+ FND SVT ++ + S
Sbjct: 553 VYNLYAVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTS 602
>sp|Q01476|UBP2_YEAST Ubiquitin carboxyl-terminal hydrolase 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP2 PE=1 SV=2
Length = 1272
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 133 YVYELFSIMIHSGSASGGHYYAYIKNFSTD-EWYCFNDQSVTRITDEDIHKSYGGGPARG 191
Y Y LFS+ IH G AS GHY+ YIK+ + + W +ND++++ + +E++ G A
Sbjct: 1191 YGYSLFSVFIHRGEASYGHYWIYIKDRNRNGIWRKYNDETISEVQEEEVFNFNEGNTATP 1250
Query: 192 YY 193
Y+
Sbjct: 1251 YF 1252
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2
PE=1 SV=2
Length = 613
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 134 VYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
VY L+++ HSG+ GGHY AY ++ T EW+ FND SVT ++ + S
Sbjct: 548 VYNLYAVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTS 597
>sp|Q3V0C5|UBP48_MOUSE Ubiquitin carboxyl-terminal hydrolase 48 OS=Mus musculus GN=Usp48
PE=1 SV=2
Length = 1052
Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 118 STSATKDPSMNAKG-PYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRI 175
S S +P + KG +VYEL +++IH G SA GHY A++K+ + EWY FND+ + ++
Sbjct: 318 SESLDMEPYVEHKGGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKM 377
>sp|Q9Y2K6|UBP20_HUMAN Ubiquitin carboxyl-terminal hydrolase 20 OS=Homo sapiens GN=USP20
PE=1 SV=2
Length = 914
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYG 185
Y+L S++ H G+A GHY AY +N +WY F+DQ VT + + + + G
Sbjct: 627 YDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEG 677
>sp|Q5R5Z6|UBP20_PONAB Ubiquitin carboxyl-terminal hydrolase 20 OS=Pongo abelii GN=USP20
PE=2 SV=1
Length = 913
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYG 185
Y+L S++ H G+A GHY AY +N +WY F+DQ VT + + + + G
Sbjct: 626 YDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEVHETVVQNAEG 676
>sp|Q76LT8|UBP48_RAT Ubiquitin carboxyl-terminal hydrolase 48 OS=Rattus norvegicus
GN=Usp48 PE=1 SV=1
Length = 1036
Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 118 STSATKDPSMNAKG-PYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRI 175
S S +P + KG +VYEL +++IH G SA GHY A++K+ + +WY FND+ + ++
Sbjct: 318 SESLDMEPYVEHKGGSFVYELSAVLIHRGVSAYSGHYIAHVKDPQSGDWYKFNDEDIEKM 377
>sp|Q92353|UBP6_SCHPO Ubiquitin carboxyl-terminal hydrolase 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp6 PE=1 SV=2
Length = 468
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 134 VYELFSIMIHSG-SASGGHYYAYIKNFSTD-EWYCFNDQSVTRITDEDIHKSYGGGPARG 191
+Y+L ++ H+G SAS GHY A+I+N + EW+ FND V+ + E I GGG A
Sbjct: 397 LYDLVGVLSHAGASASSGHYQAWIRNSNNRAEWFRFNDAKVSIVPAEKIETLDGGGEADS 456
Query: 192 YY 193
Y
Sbjct: 457 AY 458
>sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Homo sapiens
GN=USP9X PE=1 SV=3
Length = 2570
Score = 49.3 bits (116), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 110 DISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYI-----KNFSTDEW 164
D +PE ++ G Y L +++HSG ASGGHYY+YI + + W
Sbjct: 1838 DNVNPESQLIQQSEQSESETAGSTKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGERNRW 1897
Query: 165 YCFNDQSVTRIT---DEDIHKSYGGGPARG 191
Y F+D VT DE++ GG G
Sbjct: 1898 YKFDDGDVTECKMDDDEEMKNQCFGGEYMG 1927
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus
GN=Usp4 PE=1 SV=1
Length = 961
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 128 NAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDI 180
A PYVY+L ++ H G+ GHY AY KN +WY F+D SV+ +++ I
Sbjct: 856 RAARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQI 908
>sp|A7Z056|UBP20_BOVIN Ubiquitin carboxyl-terminal hydrolase 20 OS=Bos taurus GN=USP20
PE=2 SV=1
Length = 912
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRI 175
Y+L S++ H G+A GHY AY +N +WY F+DQ VT +
Sbjct: 625 YDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEV 665
>sp|Q8C6M1|UBP20_MOUSE Ubiquitin carboxyl-terminal hydrolase 20 OS=Mus musculus GN=Usp20
PE=1 SV=1
Length = 916
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRI 175
Y+L S++ H G+A GHY AY +N +WY F+DQ VT +
Sbjct: 629 YDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEV 669
>sp|A5PN09|UBP20_DANRE Ubiquitin carboxyl-terminal hydrolase 20 OS=Danio rerio GN=usp20
PE=2 SV=1
Length = 911
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRI 175
Y+L S++ H G+A GHY AY +N +WY F+DQ VT +
Sbjct: 627 YDLLSVICHHGTAGSGHYIAYCQNVINGQWYEFDDQYVTEV 667
>sp|P43593|UBP6_YEAST Ubiquitin carboxyl-terminal hydrolase 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP6 PE=1 SV=1
Length = 499
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 23/126 (18%)
Query: 88 QLDPSVSNPVITP---YNGDV-------DEGID-ISHPEPPSTSATKDPSMNAKGPYVYE 136
+ DPS S V+TP Y V D+ ++ PP+ ++PS VY
Sbjct: 378 KFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSC------VYN 431
Query: 137 LFSIMIHSGSAS-GGHYYAYIKN-FSTDEWYCFNDQSVTRITDEDIHKSYGGGPARG--- 191
L ++ H G+ S GHY A+I++ ++WY FND V+ + E I GGG +
Sbjct: 432 LIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALI 491
Query: 192 -YYSGF 196
Y GF
Sbjct: 492 LMYKGF 497
>sp|A0JM59|UBP20_XENTR Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus tropicalis
GN=usp20 PE=2 SV=1
Length = 884
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRI 175
Y+L +++ H GSAS GHY +Y +N +WY F+DQ VT +
Sbjct: 597 YDLLAVICHHGSASSGHYISYCQNVINGQWYEFDDQYVTEV 637
>sp|O42726|UBP2_KLULA Ubiquitin carboxyl-terminal hydrolase 2 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=UBP2 PE=3 SV=2
Length = 1220
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTD-EWYCFNDQSVTRITDEDIHKSYGGGPARGYY 193
Y LF++ IH G AS GHY+ YIK+ + + W +ND SVT + ++ G A Y+
Sbjct: 1137 YSLFAVFIHRGEASYGHYWVYIKDHTKNGIWRKYNDDSVTEVPQSEVFNFTEGNTATPYF 1196
>sp|B1WBD7|UBP20_XENLA Ubiquitin carboxyl-terminal hydrolase 20 OS=Xenopus laevis GN=usp20
PE=2 SV=1
Length = 840
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRI 175
Y+L +++ H GSAS GHY +Y +N +WY F+DQ VT +
Sbjct: 553 YDLLAVICHHGSASSGHYISYCQNVINGQWYEFDDQYVTEV 593
>sp|P70398|USP9X_MOUSE Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Mus musculus
GN=Usp9x PE=1 SV=2
Length = 2559
Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 110 DISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYI-----KNFSTDEW 164
D +PE + G Y L +++HSG ASGGHYY+YI + + W
Sbjct: 1838 DNVNPESQLIQQNEQSESEKAGSTKYRLVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRW 1897
Query: 165 YCFNDQSVTRIT---DEDIHKSYGGGPARG 191
Y F+D VT DE++ GG G
Sbjct: 1898 YKFDDGDVTECKMDDDEEMKNQCFGGEYMG 1927
>sp|Q0IIF7|UBP14_BOVIN Ubiquitin carboxyl-terminal hydrolase 14 OS=Bos taurus GN=USP14
PE=2 SV=3
Length = 494
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 135 YELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGG 187
Y+L +++ H G S+S GHY +++K DEW F+D V+ +T EDI + GGG
Sbjct: 418 YDLQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKVSIVTPEDILRLSGGG 470
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.128 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,499,950
Number of Sequences: 539616
Number of extensions: 4868914
Number of successful extensions: 10685
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 10382
Number of HSP's gapped (non-prelim): 336
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)