Query psy18082
Match_columns 280
No_of_seqs 201 out of 1381
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 22:09:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02657 Peptidase_C19A A subfa 100.0 2.4E-30 5.3E-35 235.9 13.7 119 3-196 184-304 (305)
2 cd02664 Peptidase_C19H A subfa 100.0 7.2E-30 1.6E-34 235.7 15.1 142 3-196 163-326 (327)
3 cd02663 Peptidase_C19G A subfa 100.0 1.2E-29 2.5E-34 231.5 15.3 121 3-196 176-299 (300)
4 KOG1865|consensus 100.0 8.3E-30 1.8E-34 240.5 12.1 116 2-199 294-410 (545)
5 cd02668 Peptidase_C19L A subfa 100.0 2.1E-29 4.6E-34 232.2 14.0 123 3-196 185-323 (324)
6 cd02665 Peptidase_C19I A subfa 100.0 2.3E-29 4.9E-34 220.4 10.4 109 4-196 117-227 (228)
7 cd02667 Peptidase_C19K A subfa 100.0 1.8E-28 3.9E-33 221.6 11.8 118 6-196 140-278 (279)
8 cd02659 peptidase_C19C A subfa 100.0 7E-28 1.5E-32 222.2 14.6 136 4-199 181-332 (334)
9 cd02669 Peptidase_C19M A subfa 99.9 3.3E-27 7.1E-32 226.1 11.0 117 4-196 321-439 (440)
10 cd02660 Peptidase_C19D A subfa 99.9 9.4E-27 2E-31 214.2 12.9 124 3-196 204-327 (328)
11 cd02671 Peptidase_C19O A subfa 99.9 2.4E-26 5.3E-31 212.5 13.5 115 3-196 209-331 (332)
12 cd02670 Peptidase_C19N A subfa 99.9 8.3E-27 1.8E-31 205.9 9.4 135 12-197 95-241 (241)
13 cd02662 Peptidase_C19F A subfa 99.9 7.8E-26 1.7E-30 200.2 12.4 100 9-196 120-239 (240)
14 KOG4598|consensus 99.9 5.4E-27 1.2E-31 224.4 5.0 187 6-200 246-441 (1203)
15 cd02661 Peptidase_C19E A subfa 99.9 3.2E-25 6.9E-30 201.1 11.0 111 4-196 192-303 (304)
16 cd02674 Peptidase_C19R A subfa 99.9 1.3E-24 2.9E-29 189.9 12.1 116 3-196 113-229 (230)
17 cd02658 Peptidase_C19B A subfa 99.9 1E-24 2.3E-29 199.4 11.9 105 3-196 203-310 (311)
18 KOG1866|consensus 99.9 2.2E-26 4.8E-31 221.6 0.5 143 3-200 275-434 (944)
19 COG5560 UBP12 Ubiquitin C-term 99.9 7.6E-26 1.6E-30 215.1 4.1 116 5-199 706-822 (823)
20 PF00443 UCH: Ubiquitin carbox 99.9 2.5E-24 5.5E-29 189.6 13.1 117 9-196 152-269 (269)
21 cd02673 Peptidase_C19Q A subfa 99.9 4.2E-24 9.2E-29 189.7 11.8 62 132-196 181-244 (245)
22 COG5077 Ubiquitin carboxyl-ter 99.9 6.6E-25 1.4E-29 211.9 4.6 119 3-188 366-485 (1089)
23 cd02257 Peptidase_C19 Peptidas 99.9 6E-23 1.3E-27 178.1 13.2 127 3-196 127-254 (255)
24 KOG1867|consensus 99.9 1.1E-23 2.5E-28 202.3 8.4 123 4-201 364-486 (492)
25 cd02672 Peptidase_C19P A subfa 99.9 6.6E-22 1.4E-26 177.8 10.4 111 3-196 143-267 (268)
26 KOG1870|consensus 99.9 1E-22 2.2E-27 207.8 4.8 114 5-199 727-841 (842)
27 KOG1872|consensus 99.8 4E-22 8.7E-27 185.3 3.1 167 2-199 292-469 (473)
28 KOG0944|consensus 99.8 1.5E-20 3.3E-25 180.3 8.1 168 2-173 497-744 (763)
29 KOG1868|consensus 99.8 2.9E-20 6.3E-25 182.5 4.4 114 7-199 532-646 (653)
30 COG5533 UBP5 Ubiquitin C-termi 99.8 5.7E-19 1.2E-23 156.6 10.7 119 5-198 295-413 (415)
31 KOG1864|consensus 99.8 2.9E-19 6.3E-24 174.7 7.8 117 5-194 452-571 (587)
32 KOG1873|consensus 99.8 2.5E-20 5.5E-25 180.4 -1.6 120 6-198 737-876 (877)
33 cd02666 Peptidase_C19J A subfa 99.7 6.1E-19 1.3E-23 163.6 2.3 68 129-196 275-342 (343)
34 KOG1863|consensus 99.7 1.5E-17 3.2E-22 174.0 4.6 124 4-194 347-480 (1093)
35 COG5207 UBP14 Isopeptidase T [ 99.5 1E-14 2.2E-19 136.8 7.7 180 2-183 485-739 (749)
36 KOG1871|consensus 99.5 3E-15 6.6E-20 136.6 2.9 128 2-198 289-418 (420)
37 PF13423 UCH_1: Ubiquitin carb 99.4 4.1E-13 8.8E-18 122.3 9.5 102 5-172 191-295 (295)
38 KOG2026|consensus 98.8 4.4E-09 9.6E-14 96.4 5.4 101 8-180 327-428 (442)
39 KOG1275|consensus 98.1 2.2E-05 4.8E-10 79.1 11.2 136 7-196 714-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 91.4 0.45 9.7E-06 42.4 5.5 38 131-171 215-252 (275)
41 PF05408 Peptidase_C28: Foot-a 86.4 1.3 2.9E-05 37.4 4.7 36 142-179 129-166 (193)
42 PF01473 CW_binding_1: Putativ 57.9 9.9 0.00021 19.5 1.8 14 155-170 3-16 (19)
43 PF02099 Josephin: Josephin; 42.8 40 0.00086 27.9 4.1 31 137-173 99-129 (157)
44 KOG1887|consensus 42.5 20 0.00043 37.0 2.7 55 128-186 720-777 (806)
45 COG0093 RplN Ribosomal protein 32.8 93 0.002 24.5 4.4 35 136-179 57-91 (122)
46 smart00460 TGc Transglutaminas 22.6 1.1E+02 0.0024 20.3 3.1 21 147-169 46-66 (68)
47 PF00770 Peptidase_C5: Adenovi 22.1 1.2E+02 0.0027 25.5 3.6 32 138-169 21-53 (183)
48 PF08715 Viral_protease: Papai 21.7 1.3E+02 0.0029 27.8 4.2 32 143-179 267-298 (320)
49 cd05751 Ig1_LILRB1_like First 21.0 69 0.0015 23.2 1.8 21 147-168 63-83 (91)
50 TIGR01067 rplN_bact ribosomal 20.7 2.1E+02 0.0046 22.6 4.6 33 138-179 59-91 (122)
No 1
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=2.4e-30 Score=235.91 Aligned_cols=119 Identities=24% Similarity=0.336 Sum_probs=107.4
Q ss_pred ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082 3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE 82 (280)
Q Consensus 3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
...++|+..|.++|++|+||||||.|+...+...|+++.|+||..|||.+|+.
T Consensus 184 ~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~--------------------------- 236 (305)
T cd02657 184 DAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT--------------------------- 236 (305)
T ss_pred CceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC---------------------------
Confidence 45689999999999999999999999988788999999999999999999942
Q ss_pred hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCC
Q psy18082 83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFST 161 (280)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~ 161 (280)
.+..|+|+|||+|.| ++.+|||+||+|...+
T Consensus 237 ------------------------------------------------~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~ 268 (305)
T cd02657 237 ------------------------------------------------PSGYYELVAVITHQGRSADSGHYVAWVRRKND 268 (305)
T ss_pred ------------------------------------------------CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCC
Confidence 135899999999999 7999999999999655
Q ss_pred CCeEEecCceeEEeChhhhhhhcCCCC-CeEEEEEe
Q psy18082 162 DEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYSGF 196 (280)
Q Consensus 162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~-~~aY~L~~ 196 (280)
++||+|||+.|+++++++|++.+||+. .+||+|+|
T Consensus 269 ~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y 304 (305)
T cd02657 269 GKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLY 304 (305)
T ss_pred CeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEE
Confidence 999999999999999999998777665 89999954
No 2
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=7.2e-30 Score=235.69 Aligned_cols=142 Identities=20% Similarity=0.268 Sum_probs=108.1
Q ss_pred ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082 3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE 82 (280)
Q Consensus 3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
...++|++.|.++|+||+||||||.|+..++...|+++.|.||..|||..++.......
T Consensus 163 ~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~--------------------- 221 (327)
T cd02664 163 LQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSES--------------------- 221 (327)
T ss_pred ccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCcccccccccc---------------------
Confidence 45789999999999999999999999998888999999999999999998853210000
Q ss_pred hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCC-
Q psy18082 83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFS- 160 (280)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~- 160 (280)
+......+..+. .........|+|+|||+|.| ++++|||+||+|...
T Consensus 222 -----------------~~~~~~~~~~~~--------------~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~ 270 (327)
T cd02664 222 -----------------PLEKKEEESGDD--------------GELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTD 270 (327)
T ss_pred -----------------cccccccccccc--------------ccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCc
Confidence 000000000000 00123467999999999999 689999999999853
Q ss_pred -------------------CCCeEEecCceeEEeChhhhhhhcCCC-CCeEEEEEe
Q psy18082 161 -------------------TDEWYCFNDQSVTRITDEDIHKSYGGG-PARGYYSGF 196 (280)
Q Consensus 161 -------------------~~~W~~fnD~~V~~v~~~~V~~~~gg~-~~~aY~L~~ 196 (280)
++.||+|||+.|+.++.++|.+..+++ ..+||+|||
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY 326 (327)
T cd02664 271 ADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFY 326 (327)
T ss_pred cccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEe
Confidence 379999999999999999998744433 389999965
No 3
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.2e-29 Score=231.50 Aligned_cols=121 Identities=18% Similarity=0.305 Sum_probs=106.0
Q ss_pred ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082 3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE 82 (280)
Q Consensus 3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
...++|+..|.++|++|+||||||.|+...+...|++..|.||..|+|.+++..
T Consensus 176 ~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~-------------------------- 229 (300)
T cd02663 176 LQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDD-------------------------- 229 (300)
T ss_pred ceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEeccccccc--------------------------
Confidence 457899999999999999999999999876778999999999999999877211
Q ss_pred hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCC
Q psy18082 83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFST 161 (280)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~ 161 (280)
.......|+|+|||+|.| ++++|||+||+|. +
T Consensus 230 ---------------------------------------------~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~ 262 (300)
T cd02663 230 ---------------------------------------------AENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--H 262 (300)
T ss_pred ---------------------------------------------cCCCCeEEEEEEEEEEecCCCCCCceEEEEEC--C
Confidence 012346999999999999 6999999999999 8
Q ss_pred CCeEEecCceeEEeChhhhhhhcCCCC--CeEEEEEe
Q psy18082 162 DEWYCFNDQSVTRITDEDIHKSYGGGP--ARGYYSGF 196 (280)
Q Consensus 162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~--~~aY~L~~ 196 (280)
++||+|||+.|+++++++|.+.+|+.. .+||+|||
T Consensus 263 ~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY 299 (300)
T cd02663 263 GGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFY 299 (300)
T ss_pred CcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEe
Confidence 999999999999999999998877643 89999965
No 4
>KOG1865|consensus
Probab=99.96 E-value=8.3e-30 Score=240.50 Aligned_cols=116 Identities=20% Similarity=0.369 Sum_probs=104.0
Q ss_pred CceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcc
Q psy18082 2 GPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDE 81 (280)
Q Consensus 2 ~~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (280)
..+.+.|++.|.++|+||+||||||++ +...||+..|.||+.|||.|||+.
T Consensus 294 ~~v~A~K~lti~raPnVLTi~LKRF~~----~~~gKI~K~I~fPE~LDl~PyMS~------------------------- 344 (545)
T KOG1865|consen 294 QKVPASKQLTIHRAPNVLTLHLKRFSN----GTGGKISKPVSFPETLDLQPYMSQ------------------------- 344 (545)
T ss_pred hhCcccceeeeecCCceEEEeeehhcc----CcccccccccCCcccccccccccC-------------------------
Confidence 357789999999999999999999975 677899999999999999999753
Q ss_pred hhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCC
Q psy18082 82 EHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFS 160 (280)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~ 160 (280)
....+..|.|||||+|.| +.++|||+||||. .
T Consensus 345 ----------------------------------------------~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks-~ 377 (545)
T KOG1865|consen 345 ----------------------------------------------PNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKS-Q 377 (545)
T ss_pred ----------------------------------------------CCCCCceEEEEEEEEeccccccCCceEEEEEc-C
Confidence 133568999999999999 9999999999999 6
Q ss_pred CCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEeecc
Q psy18082 161 TDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDK 199 (280)
Q Consensus 161 ~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~ 199 (280)
+|.||+|||+.|+.++.+.|++. .||||||.|+
T Consensus 378 ~g~Wy~~DDS~V~~~~~~~VLsq------~AYmLfY~R~ 410 (545)
T KOG1865|consen 378 NGQWYKMDDSEVTQSSIESVLSQ------QAYILFYARK 410 (545)
T ss_pred CCceEEccCceeeeccccceecc------cceEEEEEee
Confidence 89999999999999999999874 6999977765
No 5
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2.1e-29 Score=232.16 Aligned_cols=123 Identities=24% Similarity=0.323 Sum_probs=106.4
Q ss_pred ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082 3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE 82 (280)
Q Consensus 3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
++.++|+..|.+||++|+||||||.|+..++...|++..|.||..|||.+||.+.
T Consensus 185 ~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~------------------------- 239 (324)
T cd02668 185 KTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAES------------------------- 239 (324)
T ss_pred eeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhcccc-------------------------
Confidence 4578899999999999999999999999888999999999999999999995321
Q ss_pred hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCC
Q psy18082 83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFST 161 (280)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~ 161 (280)
......|+|+|||+|.| ++++|||+||+|+..+
T Consensus 240 ----------------------------------------------~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~ 273 (324)
T cd02668 240 ----------------------------------------------DEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQT 273 (324)
T ss_pred ----------------------------------------------cCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCC
Confidence 12356899999999999 6899999999999667
Q ss_pred CCeEEecCceeEEeChhhhhhhcCC---------------CCCeEEEEEe
Q psy18082 162 DEWYCFNDQSVTRITDEDIHKSYGG---------------GPARGYYSGF 196 (280)
Q Consensus 162 ~~W~~fnD~~V~~v~~~~V~~~~gg---------------~~~~aY~L~~ 196 (280)
++||+|||+.|++++.+.|...++. .+..||||+|
T Consensus 274 ~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y 323 (324)
T cd02668 274 GEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVY 323 (324)
T ss_pred CcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEe
Confidence 9999999999999999999764441 1278999954
No 6
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2.3e-29 Score=220.44 Aligned_cols=109 Identities=27% Similarity=0.481 Sum_probs=96.9
Q ss_pred eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082 4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH 83 (280)
Q Consensus 4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (280)
+.++|+..|.+||++|+||||||.|+. +...|+++.|+||..| .
T Consensus 117 ~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~Ki~~~v~FP~~l--~-------------------------------- 160 (228)
T cd02665 117 VKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDKLEFPQII--Q-------------------------------- 160 (228)
T ss_pred hhhhhhhhhhhCChhhEEEeEeeEEcC--CccEECCEEEEeeCcc--C--------------------------------
Confidence 346788899999999999999999986 6788999999999986 1
Q ss_pred hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082 84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE 163 (280)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~ 163 (280)
...|+|+|||+|.|++++|||++|+|+..+++
T Consensus 161 ------------------------------------------------~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~ 192 (228)
T cd02665 161 ------------------------------------------------QVPYELHAVLVHEGQANAGHYWAYIYKQSRQE 192 (228)
T ss_pred ------------------------------------------------CceeEEEEEEEecCCCCCCEEEEEEEcCCCCE
Confidence 23799999999999999999999999867899
Q ss_pred eEEecCceeEEeChhhhhh-hcCCCC-CeEEEEEe
Q psy18082 164 WYCFNDQSVTRITDEDIHK-SYGGGP-ARGYYSGF 196 (280)
Q Consensus 164 W~~fnD~~V~~v~~~~V~~-~~gg~~-~~aY~L~~ 196 (280)
||+|||+.|++++.++|.+ .|||+. .+||+|+|
T Consensus 193 W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfY 227 (228)
T cd02665 193 WEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMY 227 (228)
T ss_pred EEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEE
Confidence 9999999999999999976 678776 89999954
No 7
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=1.8e-28 Score=221.59 Aligned_cols=118 Identities=22% Similarity=0.395 Sum_probs=99.8
Q ss_pred EEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhhc
Q psy18082 6 YKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCE 85 (280)
Q Consensus 6 ~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (280)
++|+..|.++|++|+||||||.|+.. +...|++..|.||..|||.+||.+...
T Consensus 140 a~k~~~i~~~P~~Lii~LkRF~~~~~-~~~~Ki~~~v~fP~~Ldl~~~~~~~~~-------------------------- 192 (279)
T cd02667 140 AKKQYLISKLPPVLVIHLKRFQQPRS-ANLRKVSRHVSFPEILDLAPFCDPKCN-------------------------- 192 (279)
T ss_pred eeeEeEhhhCCCeEEEEEeccccCcc-cCceecCceEeCCCccchhhccCcccc--------------------------
Confidence 68999999999999999999999875 467899999999999999999654210
Q ss_pred cccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCC-----
Q psy18082 86 ENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFS----- 160 (280)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~----- 160 (280)
. ........|+|+|||+|.|+.++|||+||+|...
T Consensus 193 -------------------------~---------------~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~ 232 (279)
T cd02667 193 -------------------------S---------------SEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRL 232 (279)
T ss_pred -------------------------c---------------cccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCcccccc
Confidence 0 0122357999999999999669999999999853
Q ss_pred ----------------CCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 161 ----------------TDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 161 ----------------~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
+++||+|||+.|++++.++|++ ..||+|+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~------~~aYiLfY 278 (279)
T cd02667 233 SDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLK------SEAYLLFY 278 (279)
T ss_pred ccccccccccccCCCCCCcEEEEECCccEECCHHHhcc------CCcEEEEe
Confidence 6899999999999999999865 36999955
No 8
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=7e-28 Score=222.24 Aligned_cols=136 Identities=29% Similarity=0.467 Sum_probs=111.0
Q ss_pred eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082 4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH 83 (280)
Q Consensus 4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (280)
..++|+..|.++|++|+|||+||.|+..++...|++..|.||..|||.+|+......+.
T Consensus 181 ~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~--------------------- 239 (334)
T cd02659 181 VDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKE--------------------- 239 (334)
T ss_pred ccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCcccccccccccc---------------------
Confidence 36788999999999999999999999888889999999999999999999755321100
Q ss_pred hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082 84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE 163 (280)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~ 163 (280)
. ...........|+|+|||+|.|+..+|||+||+|...++.
T Consensus 240 -----------------------~----------------~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~~~~~ 280 (334)
T cd02659 240 -----------------------G----------------DSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGK 280 (334)
T ss_pred -----------------------c----------------cccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECCCCCc
Confidence 0 0000123467999999999999889999999999966899
Q ss_pred eEEecCceeEEeChhhhh-hhcCCCC---------------CeEEEEEeecc
Q psy18082 164 WYCFNDQSVTRITDEDIH-KSYGGGP---------------ARGYYSGFEDK 199 (280)
Q Consensus 164 W~~fnD~~V~~v~~~~V~-~~~gg~~---------------~~aY~L~~~~~ 199 (280)
||+|||+.|+++++++|+ .++||.. .+||||+|.++
T Consensus 281 W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~ 332 (334)
T cd02659 281 WYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERK 332 (334)
T ss_pred eEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEe
Confidence 999999999999999996 4778762 57999965543
No 9
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=3.3e-27 Score=226.08 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=99.5
Q ss_pred eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccce-ecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082 4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSV-ETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE 82 (280)
Q Consensus 4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
..++|++.|++||+||+||||||.|+. +...|+++.|.||.. |||.+|+.+..
T Consensus 321 ~~a~k~~~I~~LP~vLiihLKRF~~~~--~~~~K~~t~V~FP~~~LDm~~y~~~~~------------------------ 374 (440)
T cd02669 321 KDSLKRYLISRLPKYLIFHIKRFSKNN--FFKEKNPTIVNFPIKNLDLSDYVHFDK------------------------ 374 (440)
T ss_pred ccceEEEEEeeCCcEEEEEEecccCCC--CccccCCCEEECCCCccchhhhhCccc------------------------
Confidence 346899999999999999999998874 677899999999997 89999964210
Q ss_pred hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecC-CCceEEEEEEcCCC
Q psy18082 83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSA-SGGHYYAYIKNFST 161 (280)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~-~sGHY~~yir~~~~ 161 (280)
.....+..|+|+|||+|.|++ ++|||+||+|+..+
T Consensus 375 --------------------------------------------~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~ 410 (440)
T cd02669 375 --------------------------------------------PSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKST 410 (440)
T ss_pred --------------------------------------------cccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCC
Confidence 012245799999999999966 99999999998668
Q ss_pred CCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 162 DEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
|+||+|||+.|+++++++|+. ..||+|+|
T Consensus 411 ~~W~~fdD~~V~~v~~~~v~~------~eaYll~Y 439 (440)
T cd02669 411 NKWFEIQDLNVKEVLPQLIFL------SESYIQIW 439 (440)
T ss_pred CeEEEEECCeeeEcCHHHhcc------CCceEEEe
Confidence 999999999999999999965 36999954
No 10
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=9.4e-27 Score=214.22 Aligned_cols=124 Identities=21% Similarity=0.363 Sum_probs=102.6
Q ss_pred ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082 3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE 82 (280)
Q Consensus 3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
...+.|+..|.+||++|+||||||.|+.. +...|++..|.||.+|||.+||......
T Consensus 204 ~~~~~~~~~i~~lP~~Lii~lkRf~~~~~-~~~~K~~~~v~fp~~Ldl~~~~~~~~~~---------------------- 260 (328)
T cd02660 204 TQEATKQLSIKKLPPVLCFQLKRFEHSLN-KTSRKIDTYVQFPLELNMTPYTSSSIGD---------------------- 260 (328)
T ss_pred ccceEEEEEecCCCceeEEEEEeEEecCC-CCCcCCCcEEeCCCEechhhhccccccc----------------------
Confidence 34788999999999999999999999876 6778999999999999999997643100
Q ss_pred hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCC
Q psy18082 83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTD 162 (280)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~ 162 (280)
... .........|+|+|||+|.|+..+|||+||+|.. ++
T Consensus 261 ----------------------~~~------------------~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~-~~ 299 (328)
T cd02660 261 ----------------------TQD------------------SNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG-DG 299 (328)
T ss_pred ----------------------ccc------------------cccCCCCceEEEEEEEEeeccCCCCcEEEEEECC-CC
Confidence 000 0013346799999999999988899999999993 59
Q ss_pred CeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 163 EWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 163 ~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
+||+|||+.|+++++++|+. ..||+|+|
T Consensus 300 ~W~~~nD~~V~~~~~~~v~~------~~ayil~Y 327 (328)
T cd02660 300 QWFKFDDAMITRVSEEEVLK------SQAYLLFY 327 (328)
T ss_pred cEEEEECCeeEECCHHHhcC------CCcEEEEe
Confidence 99999999999999999975 36999954
No 11
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=2.4e-26 Score=212.53 Aligned_cols=115 Identities=21% Similarity=0.302 Sum_probs=96.9
Q ss_pred ceEEEEEEecccCCcceEEEEEEEEEeCCc----ceeeccccceeccceecCCCCCCCcccccccccccccccccccCCC
Q psy18082 3 PIVYKADALSSKHIKLAIHQDKVVDFSGTT----SENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTN 78 (280)
Q Consensus 3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~----~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (280)
...++|+..|.++|++|+||||||.|+... +...|+++.|.||..|||.+++..
T Consensus 209 ~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~---------------------- 266 (332)
T cd02671 209 YTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK---------------------- 266 (332)
T ss_pred ceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccCC----------------------
Confidence 467899999999999999999999987532 457899999999999999877311
Q ss_pred CcchhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEE
Q psy18082 79 QDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIK 157 (280)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir 157 (280)
.....|+|+|||+|.| ++++|||+||+|
T Consensus 267 ---------------------------------------------------~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr 295 (332)
T cd02671 267 ---------------------------------------------------PKNDVYRLFAVVMHSGATISSGHYTAYVR 295 (332)
T ss_pred ---------------------------------------------------CCCCeEEEEEEEEEcCCCCCCCeEEEEEE
Confidence 1246899999999999 689999999999
Q ss_pred cCCCCCeEEecCceeEEeChhhhhhhc-CC--CCCeEEEEEe
Q psy18082 158 NFSTDEWYCFNDQSVTRITDEDIHKSY-GG--GPARGYYSGF 196 (280)
Q Consensus 158 ~~~~~~W~~fnD~~V~~v~~~~V~~~~-gg--~~~~aY~L~~ 196 (280)
||+|||+.|+.++++++.+.. +. ...+||+|||
T Consensus 296 ------W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY 331 (332)
T cd02671 296 ------WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFY 331 (332)
T ss_pred ------EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEE
Confidence 999999999999999987643 22 2279999965
No 12
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=8.3e-27 Score=205.86 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=92.7
Q ss_pred cccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhhccccCCC
Q psy18082 12 SSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEENQLDP 91 (280)
Q Consensus 12 I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (280)
|.++|++|+||||||.|+. +...|+++.|.||..|||.+|+.+....-.. ++. +.
T Consensus 95 i~~lP~vLiIhLKRF~~~~--~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~--------------------~~~-~~-- 149 (241)
T cd02670 95 FAKAPSCLIICLKRYGKTE--GKAQKMFKKILIPDEIDIPDFVADDPRACSK--------------------CQL-EC-- 149 (241)
T ss_pred hhhCCCeEEEEEEccccCC--CcceeCCcEECCCCcCCchhhcccccccccc--------------------ccc-cc--
Confidence 8999999999999999886 6789999999999999999997553100000 000 00
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCC----------
Q psy18082 92 SVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFS---------- 160 (280)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~---------- 160 (280)
........ .........|+|+|||+|+| ++++|||+||+|...
T Consensus 150 -----------~~~~~~~~---------------~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~ 203 (241)
T cd02670 150 -----------RVCYDDKD---------------FSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEA 203 (241)
T ss_pred -----------cccccccc---------------ccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCC
Confidence 00000000 00123457999999999999 799999999999964
Q ss_pred -CCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEee
Q psy18082 161 -TDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFE 197 (280)
Q Consensus 161 -~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~ 197 (280)
++.|++|||..|+.+....+...-......||+|||+
T Consensus 204 ~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 204 YNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred CCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 3899999999998876543210000112589999653
No 13
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=7.8e-26 Score=200.22 Aligned_cols=100 Identities=16% Similarity=0.338 Sum_probs=88.8
Q ss_pred EEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhhcccc
Q psy18082 9 DALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEENQ 88 (280)
Q Consensus 9 ~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (280)
+..|.++|++|+||||||.|+.. +...|++..|.||..| .
T Consensus 120 ~~~i~~lP~vLii~LkRF~~~~~-~~~~K~~~~v~fp~~l--~------------------------------------- 159 (240)
T cd02662 120 QTVIVRLPQILCIHLSRSVFDGR-GTSTKNSCKVSFPERL--P------------------------------------- 159 (240)
T ss_pred eEEeecCCcEEEEEEEEEEEcCC-CceeeeccEEECCCcc--C-------------------------------------
Confidence 67899999999999999999987 8899999999999987 1
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcC---------
Q psy18082 89 LDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNF--------- 159 (280)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~--------- 159 (280)
...|+|+|||+|.|+..+|||+||+|.+
T Consensus 160 -------------------------------------------~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~ 196 (240)
T cd02662 160 -------------------------------------------KVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPG 196 (240)
T ss_pred -------------------------------------------CceEEEEEEEEEeccCCCceEEEEEeCCCcccccccc
Confidence 2489999999999977999999999996
Q ss_pred -----------CCCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 160 -----------STDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 160 -----------~~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
..+.||+|||+.|+++++++|+. ...||+|||
T Consensus 197 ~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~-----~~~aY~LfY 239 (240)
T cd02662 197 SFVRMREGPSSTSHPWWRISDTTVKEVSESEVLE-----QKSAYMLFY 239 (240)
T ss_pred cccccccccCccCCCEEEEechheEEeCHHHHhh-----CCCEEEEEe
Confidence 34899999999999999999952 147999965
No 14
>KOG4598|consensus
Probab=99.93 E-value=5.4e-27 Score=224.36 Aligned_cols=187 Identities=29% Similarity=0.425 Sum_probs=123.2
Q ss_pred EEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccc--cccccccccccccCCCCcchh
Q psy18082 6 YKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRL--DYGVRKGAESNQASTNQDEEH 83 (280)
Q Consensus 6 ~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 83 (280)
+-|-+.|..+|-+|.||||||.||.+|..++|++++|.||..|||..|...+....+ .+...-..+..........+.
T Consensus 246 ahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (1203)
T KOG4598|consen 246 AHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGS 325 (1203)
T ss_pred hhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCC
Confidence 457789999999999999999999999999999999999999999999544210000 000000000000000111111
Q ss_pred hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082 84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE 163 (280)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~ 163 (280)
+...........+..-..+.++..+++++ .+..+......++..|+|+||.+|+|++.+|||++|||+..++.
T Consensus 326 ~n~~~~~~~~~s~~~~~~~~n~~~g~~~~-------~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~~~ 398 (1203)
T KOG4598|consen 326 PNPKRCTPGVQSPNRYQGSENVCVGQPID-------HAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDR 398 (1203)
T ss_pred CCcccCcccccCcccccCccccccCCcCc-------hhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCcCc
Confidence 11111111111111111222233344333 11122223456789999999999999999999999999998999
Q ss_pred eEEecCceeEEeChhhhhhhcCCCC-------CeEEEEEeeccc
Q psy18082 164 WYCFNDQSVTRITDEDIHKSYGGGP-------ARGYYSGFEDKV 200 (280)
Q Consensus 164 W~~fnD~~V~~v~~~~V~~~~gg~~-------~~aY~L~~~~~~ 200 (280)
||+|||..|+.++..+|.+.|||.+ .+|||| +|+++
T Consensus 399 w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnayml-myr~i 441 (1203)
T KOG4598|consen 399 WYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYML-MYRRI 441 (1203)
T ss_pred eEEecCccccccCHHHHHHhhCCCCCCccccCcchhhh-hhhhc
Confidence 9999999999999999999999865 579999 55544
No 15
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=3.2e-25 Score=201.12 Aligned_cols=111 Identities=23% Similarity=0.432 Sum_probs=96.7
Q ss_pred eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082 4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH 83 (280)
Q Consensus 4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (280)
..++|+..|.++|++|+|||+||.|+ ...|++..|.||..|||.+|+...
T Consensus 192 ~~~~~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~~~v~f~~~L~l~~~~~~~-------------------------- 241 (304)
T cd02661 192 VKASKQLTIHRAPNVLTIHLKRFSNF----RGGKINKQISFPETLDLSPYMSQP-------------------------- 241 (304)
T ss_pred cceEEEEEEecCCcEEEEEEeccccC----CccccCCeEecCCeechhhccccC--------------------------
Confidence 45789999999999999999999887 457999999999999999995331
Q ss_pred hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCCC
Q psy18082 84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTD 162 (280)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~~ 162 (280)
......|+|+|||+|.| ++.+|||++|+|. .++
T Consensus 242 ---------------------------------------------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-~~~ 275 (304)
T cd02661 242 ---------------------------------------------NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS-SNG 275 (304)
T ss_pred ---------------------------------------------CCCCceeeEEEEEEECCCCCCCcCCEEEEEC-CCC
Confidence 12357999999999999 5699999999998 578
Q ss_pred CeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 163 EWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 163 ~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
+||+|||+.|+++++++|++. .||+|+|
T Consensus 276 ~W~~~nD~~V~~v~~~~v~~~------~aYil~Y 303 (304)
T cd02661 276 KWYNMDDSKVSPVSIETVLSQ------KAYILFY 303 (304)
T ss_pred CEEEEeCCeeEECCHHHhcCC------CcEEEEe
Confidence 999999999999999999753 7999965
No 16
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=1.3e-24 Score=189.90 Aligned_cols=116 Identities=26% Similarity=0.451 Sum_probs=98.2
Q ss_pred ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccc-eecCCCCCCCcccccccccccccccccccCCCCcc
Q psy18082 3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTS-VETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDE 81 (280)
Q Consensus 3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (280)
...+.++..|.++|++|+|||+||.|+. +...|++..|.||. .|||.+|+...
T Consensus 113 ~~~~~~~~~i~~lP~iLii~l~R~~~~~--~~~~K~~~~v~~~~~~l~l~~~~~~~------------------------ 166 (230)
T cd02674 113 KRKATKKLTISRLPKVLIIHLKRFSFSR--GSTRKLTTPVTFPLNDLDLTPYVDTR------------------------ 166 (230)
T ss_pred ccceEEEEEEecCChhhEeEhhheecCC--CCcccCCceEeccccccccccccCcc------------------------
Confidence 3467889999999999999999999876 67889999999996 58999984110
Q ss_pred hhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCC
Q psy18082 82 EHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFST 161 (280)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~ 161 (280)
.......|+|+|||+|.|+..+|||+||+|...+
T Consensus 167 ----------------------------------------------~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~ 200 (230)
T cd02674 167 ----------------------------------------------SFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNET 200 (230)
T ss_pred ----------------------------------------------cCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCC
Confidence 1234678999999999996699999999999656
Q ss_pred CCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 162 DEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
++|++|||+.|++++.++|. ...||+|+|
T Consensus 201 ~~W~~fnD~~V~~i~~~~~~------~~~~YlL~Y 229 (230)
T cd02674 201 NDWYKFDDSRVTKVSESSVV------SSSAYILFY 229 (230)
T ss_pred CceEEEcCCeEEEcCHHHcc------CCCceEEEe
Confidence 99999999999999999982 257999965
No 17
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=1e-24 Score=199.43 Aligned_cols=105 Identities=23% Similarity=0.269 Sum_probs=91.6
Q ss_pred ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082 3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE 82 (280)
Q Consensus 3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
...++|+..|.+||++|+||||||.|+. ++...|++..|.||..| .
T Consensus 203 ~~~a~k~~~i~~lP~vLii~LkRF~~~~-~~~~~Ki~~~v~~p~~l--~------------------------------- 248 (311)
T cd02658 203 KTTATKTTGFKTFPDYLVINMKRFQLLE-NWVPKKLDVPIDVPEEL--G------------------------------- 248 (311)
T ss_pred cccEEEEEEeecCCceEEEEeEEEEecC-CCceEeeccccccCCcC--C-------------------------------
Confidence 4678999999999999999999999974 36788999999999766 1
Q ss_pred hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcC--
Q psy18082 83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNF-- 159 (280)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~-- 159 (280)
+..|+|+|||+|.| ++++|||+||+|..
T Consensus 249 -------------------------------------------------~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~ 279 (311)
T cd02658 249 -------------------------------------------------PGKYELIAFISHKGTSVHSGHYVAHIKKEID 279 (311)
T ss_pred -------------------------------------------------CCcEEEEEEEEccCCCCCCcceEEEEeCCCC
Confidence 24799999999999 69999999999995
Q ss_pred CCCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 160 STDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 160 ~~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
.+++||+|||+.|++++..+|.. ..||+|||
T Consensus 280 ~~~~W~~fnD~~V~~~~~~~~~~------~~~YilfY 310 (311)
T cd02658 280 GEGKWVLFNDEKVVASQDPPEMK------KLGYIYFY 310 (311)
T ss_pred CCCCEEEecCceeEECCcccccC------CcceEEEE
Confidence 24999999999999999988843 47999965
No 18
>KOG1866|consensus
Probab=99.92 E-value=2.2e-26 Score=221.58 Aligned_cols=143 Identities=24% Similarity=0.358 Sum_probs=111.6
Q ss_pred ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082 3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE 82 (280)
Q Consensus 3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
+++-.|+++|.+||++|+||||||.||..+...+|-+..++||.+|||.||+..+...-+
T Consensus 275 K~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e-------------------- 334 (944)
T KOG1866|consen 275 KVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLE-------------------- 334 (944)
T ss_pred hhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhc--------------------
Confidence 455568999999999999999999999999999999999999999999999765431100
Q ss_pred hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCC--
Q psy18082 83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFS-- 160 (280)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~-- 160 (280)
.+.++.|.. ...+..+.+|+|+||++|+|-+++||||+||+...
T Consensus 335 -------------------~~~~~~g~~---------------~e~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~rr~~ 380 (944)
T KOG1866|consen 335 -------------------GENVESGQQ---------------LEQSAGTTKYELVGVLVHSGQASAGHYYSFIKQRRGE 380 (944)
T ss_pred -------------------cccCCcCcc---------------cccccCcceeEEEEEEEecccccCcchhhhhhhhccC
Confidence 000011100 01234678999999999999999999999999853
Q ss_pred -CCCeEEecCceeEEeChhhhhh-hcCCCC-------------CeEEEEEeeccc
Q psy18082 161 -TDEWYCFNDQSVTRITDEDIHK-SYGGGP-------------ARGYYSGFEDKV 200 (280)
Q Consensus 161 -~~~W~~fnD~~V~~v~~~~V~~-~~gg~~-------------~~aY~L~~~~~~ 200 (280)
.++||+|||-.|++++..++.. +|||.- =+||+|| |+|.
T Consensus 381 ~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlF-Yer~ 434 (944)
T KOG1866|consen 381 DGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLF-YERM 434 (944)
T ss_pred CCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHH-HHHh
Confidence 4799999999999999999865 898742 2689994 4444
No 19
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.6e-26 Score=215.13 Aligned_cols=116 Identities=25% Similarity=0.326 Sum_probs=99.9
Q ss_pred EEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccce-ecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082 5 VYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSV-ETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH 83 (280)
Q Consensus 5 ~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (280)
.|+|++.||++|.||+||||||++.+ ..+.|+.+.|+||.. |||+.+...
T Consensus 706 qasKqmelwrlP~iLiihLkRFss~r--sfrdKiddlVeyPiddldLs~~~~~--------------------------- 756 (823)
T COG5560 706 QASKQMELWRLPMILIIHLKRFSSVR--SFRDKIDDLVEYPIDDLDLSGVEYM--------------------------- 756 (823)
T ss_pred hhhhhhhhhcCChheeeehhhhhhcc--cchhhhhhhhccccccccccceEEe---------------------------
Confidence 47999999999999999999998665 688999999999995 999887211
Q ss_pred hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082 84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE 163 (280)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~ 163 (280)
.......|+||||=+|.|.+.+|||++|+|++.+++
T Consensus 757 --------------------------------------------~~~p~liydlyavDNHygglsgGHYtAyarn~~n~~ 792 (823)
T COG5560 757 --------------------------------------------VDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNG 792 (823)
T ss_pred --------------------------------------------ecCcceEEEeeeccccccccCCcceeeeeecccCCc
Confidence 011237999999999999999999999999999999
Q ss_pred eEEecCceeEEeChhhhhhhcCCCCCeEEEEEeecc
Q psy18082 164 WYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDK 199 (280)
Q Consensus 164 W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~ 199 (280)
||+|||+.|++|++++... .+||+||+.++
T Consensus 793 wy~fdDsritevdped~vt------ssaYvLFyrrk 822 (823)
T COG5560 793 WYLFDDSRITEVDPEDSVT------SSAYVLFYRRK 822 (823)
T ss_pred eEEecCccccccCcccccc------ceeEEEEEEec
Confidence 9999999999999988533 47999977664
No 20
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.91 E-value=2.5e-24 Score=189.57 Aligned_cols=117 Identities=26% Similarity=0.422 Sum_probs=94.3
Q ss_pred EEecccCCcceEEEEEEEEEeCCcceeeccccceecc-ceecCCCCCCCcccccccccccccccccccCCCCcchhhccc
Q psy18082 9 DALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVT-SVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEEN 87 (280)
Q Consensus 9 ~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (280)
+..|.++|++|+|||+||.|+..++...|+...|.|| ..|||.+++.....
T Consensus 152 ~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~---------------------------- 203 (269)
T PF00443_consen 152 QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNS---------------------------- 203 (269)
T ss_dssp EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCC----------------------------
T ss_pred ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccc----------------------------
Confidence 5789999999999999999999888899999999999 69999998543210
Q ss_pred cCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCCeEEe
Q psy18082 88 QLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCF 167 (280)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W~~f 167 (280)
.......|+|+|||+|.|+..+|||+||+|+..+++|++|
T Consensus 204 ----------------------------------------~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~W~~~ 243 (269)
T PF00443_consen 204 ----------------------------------------ECQSNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGKWYKF 243 (269)
T ss_dssp ----------------------------------------THTSSSEEEEEEEEEEESSTTSEEEEEEEEETTTTEEEEE
T ss_pred ----------------------------------------cccccceeeehhhhccccccccceEEEeeccccCCeEEEe
Confidence 0113579999999999998899999999999666789999
Q ss_pred cCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 168 NDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 168 nD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
||+.|++++.++|.+.. ...||+|+|
T Consensus 244 dD~~v~~~~~~~v~~~~---~~~~yll~Y 269 (269)
T PF00443_consen 244 DDSRVTEVSWEEVIKSS---NSTAYLLFY 269 (269)
T ss_dssp ETTEEEEESHHHHCCGG---STCEEEEEE
T ss_pred eCCceEECCHHHHhhcc---CCceEEEeC
Confidence 99999999999997632 257999954
No 21
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=4.2e-24 Score=189.67 Aligned_cols=62 Identities=26% Similarity=0.574 Sum_probs=54.0
Q ss_pred ceeEEEEEEEEEee-cCCCceEEEEEEcCC-CCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 132 PYVYELFSIMIHSG-SASGGHYYAYIKNFS-TDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 132 ~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~-~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
...|+|+|||+|.| ++++|||+||+|... +++||+|||+.|+++++++|++. ....||+|||
T Consensus 181 ~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~---~~~~aYiLFY 244 (245)
T cd02673 181 DAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTN---ARSSGYLIFY 244 (245)
T ss_pred CceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhc---cCCceEEEEE
Confidence 35799999999999 689999999999865 68999999999999999999742 1257999965
No 22
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.6e-25 Score=211.93 Aligned_cols=119 Identities=24% Similarity=0.363 Sum_probs=104.2
Q ss_pred ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082 3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE 82 (280)
Q Consensus 3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
=..+.|-..+..|||||.||||||.||-.+....|||++.+||+++||.||+.....
T Consensus 366 lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~----------------------- 422 (1089)
T COG5077 366 LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDAD----------------------- 422 (1089)
T ss_pred chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhh-----------------------
Confidence 345788899999999999999999999999999999999999999999999654310
Q ss_pred hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCC
Q psy18082 83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTD 162 (280)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~ 162 (280)
........|.|+||++|+|.++.||||+++|...+|
T Consensus 423 --------------------------------------------ksen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg 458 (1089)
T COG5077 423 --------------------------------------------KSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDG 458 (1089)
T ss_pred --------------------------------------------hhcccCcEEEEEEEEEeccccCCceEEEEeccccCC
Confidence 012234799999999999999999999999987799
Q ss_pred CeEEecCceeEEeChhhhhh-hcCCCC
Q psy18082 163 EWYCFNDQSVTRITDEDIHK-SYGGGP 188 (280)
Q Consensus 163 ~W~~fnD~~V~~v~~~~V~~-~~gg~~ 188 (280)
.||+|||..|+++++.+|++ .|||..
T Consensus 459 ~WykfdDtrVtrat~kevleeNfGgd~ 485 (1089)
T COG5077 459 RWYKFDDTRVTRATEKEVLEENFGGDH 485 (1089)
T ss_pred CceeecceehhhHHHHHHHHHhcCCCC
Confidence 99999999999999999875 888754
No 23
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.89 E-value=6e-23 Score=178.08 Aligned_cols=127 Identities=27% Similarity=0.393 Sum_probs=103.3
Q ss_pred ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082 3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE 82 (280)
Q Consensus 3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
...+.++..|.++|++|+|||+||.++.. +...|++..|.||..|++..++....
T Consensus 127 ~~~~~~~~~i~~lP~~L~i~l~R~~~~~~-~~~~k~~~~v~~~~~l~~~~~~~~~~------------------------ 181 (255)
T cd02257 127 KQEATKRLKIKKLPPVLIIHLKRFSFNED-GTKEKLNTKVSFPLELDLSPYLSEGE------------------------ 181 (255)
T ss_pred ccceeEEEecccCCceeEEEeeceeeccc-cccccCCCeEeCCCcccCcccccccc------------------------
Confidence 45678999999999999999999998764 67889999999999999999853210
Q ss_pred hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCC
Q psy18082 83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFST 161 (280)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~ 161 (280)
...........|+|+|||+|.| ++.+|||+||+|...+
T Consensus 182 -----------------------------------------~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~ 220 (255)
T cd02257 182 -----------------------------------------KDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSD 220 (255)
T ss_pred -----------------------------------------ccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCC
Confidence 0001233467999999999999 5699999999999655
Q ss_pred CCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 162 DEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
+.||+|||..|++++.++|... ++....||+|+|
T Consensus 221 ~~W~~~nD~~V~~v~~~~~~~~-~~~~~~~yll~Y 254 (255)
T cd02257 221 GKWYKFNDDKVTEVSEEEVLEF-GSLSSSAYILFY 254 (255)
T ss_pred CceEEEeccccEEcCHHHhhhc-cCCCCceEEEEE
Confidence 9999999999999999998653 223368999965
No 24
>KOG1867|consensus
Probab=99.89 E-value=1.1e-23 Score=202.31 Aligned_cols=123 Identities=20% Similarity=0.346 Sum_probs=104.6
Q ss_pred eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082 4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH 83 (280)
Q Consensus 4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (280)
...+|++.|.+||.+|++|||||.+....... |+++.|.||..|+|.+||..+...
T Consensus 364 ~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~-ki~~~v~fp~~l~m~p~~~~~~~~----------------------- 419 (492)
T KOG1867|consen 364 QESTKQLTIRKLPAVLCLHLKRFEHSATGARE-KIDSYVSFPVLLNMKPYCSSEKLK----------------------- 419 (492)
T ss_pred cccccccccccCCceeeeeecccccccccccc-ccCcccccchhhcCCccccccccc-----------------------
Confidence 46789999999999999999999988754344 999999999999999997542100
Q ss_pred hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082 84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE 163 (280)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~ 163 (280)
.....+..|+|+|||+|+|++++|||+||+|. .+.
T Consensus 420 -------------------------------------------~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~--~~~ 454 (492)
T KOG1867|consen 420 -------------------------------------------SQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQ--SGG 454 (492)
T ss_pred -------------------------------------------cCCCCCceEEEEEEEEeccCCCCCceEEEEEe--CCC
Confidence 01124689999999999999999999999999 889
Q ss_pred eEEecCceeEEeChhhhhhhcCCCCCeEEEEEeecccc
Q psy18082 164 WYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDKVV 201 (280)
Q Consensus 164 W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~~~ 201 (280)
||+|||+.|+.+++++|++. .||+|||.+...
T Consensus 455 ~~~~dDs~v~~~s~~eVl~~------~aylLFY~~~~~ 486 (492)
T KOG1867|consen 455 WFKCDDSTVTKVSEEEVLSS------QAYLLFYTQEQV 486 (492)
T ss_pred cEEEcCeEEEEeeHHHhhhc------hhhheehhHHhh
Confidence 99999999999999999874 799998777653
No 25
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.86 E-value=6.6e-22 Score=177.80 Aligned_cols=111 Identities=14% Similarity=0.237 Sum_probs=88.6
Q ss_pred ceEEEEEEecccCCc----ceEEEEEEEEEeCCc-----ceeeccccceeccceecCCCCCCCccccccccccccccccc
Q psy18082 3 PIVYKADALSSKHIK----LAIHQDKVVDFSGTT-----SENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESN 73 (280)
Q Consensus 3 ~~~~~K~~~I~~lP~----vL~IhLkRF~fd~~~-----~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~ 73 (280)
...++|++.|++||+ ||+||||||.+.... ....|++..|.||..+++..++..
T Consensus 143 ~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~----------------- 205 (268)
T cd02672 143 YQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNR----------------- 205 (268)
T ss_pred ccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhcc-----------------
Confidence 356889999999999 999999999754321 235678889999988776554211
Q ss_pred ccCCCCcchhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceE
Q psy18082 74 QASTNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHY 152 (280)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY 152 (280)
.......|+|+|||+|.| +..+|||
T Consensus 206 ------------------------------------------------------~~~~~~~Y~L~gvV~hig~~~~~GHy 231 (268)
T cd02672 206 ------------------------------------------------------GQESIYKYELVGYVCEINDSSRGQHN 231 (268)
T ss_pred ------------------------------------------------------CCCCCceEEEEEEEEEecCCCCCCcE
Confidence 011346899999999999 5599999
Q ss_pred EEEEEcCC----CCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 153 YAYIKNFS----TDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 153 ~~yir~~~----~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
+||+|... .++||.|||..|++|++ .||+|||
T Consensus 232 va~vk~~~~~~~~~~WylFND~~V~~vs~------------~aYiLfY 267 (268)
T cd02672 232 VVFVIKVNEESTHGRWYLFNDFLVTPVSE------------LAYILLY 267 (268)
T ss_pred EEEEEccCCCCCCCcEEEecCeEEEEcCc------------hheeeec
Confidence 99999854 68999999999999998 5999965
No 26
>KOG1870|consensus
Probab=99.86 E-value=1e-22 Score=207.75 Aligned_cols=114 Identities=22% Similarity=0.338 Sum_probs=100.4
Q ss_pred EEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccce-ecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082 5 VYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSV-ETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH 83 (280)
Q Consensus 5 ~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (280)
-|+|++.||+||+||+||||||+|.+ ....|+.+.|+||.. ||+++|+...
T Consensus 727 ~A~Kk~~lwrlPeiLiihLKrF~~~r--~~~~k~~~~v~fPi~~ld~s~~~~~~-------------------------- 778 (842)
T KOG1870|consen 727 QATKKLDLWRLPEILIIHLKRFQYSR--ESSSKVKTKVEFPLGSLDLSEFVVNK-------------------------- 778 (842)
T ss_pred HHhhhhhhhhCCceEEEEeecceeec--hhhhhhCccccCCCcCCCcchhhccC--------------------------
Confidence 47899999999999999999999987 556999999999995 9999994321
Q ss_pred hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082 84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE 163 (280)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~ 163 (280)
....|+|+||.+|.|.+.+|||++|+|+..+++
T Consensus 779 -----------------------------------------------~~~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~ 811 (842)
T KOG1870|consen 779 -----------------------------------------------EQVLYDLYAVGNHYGQLSGGHYTAYAKNVGDGK 811 (842)
T ss_pred -----------------------------------------------ccceeeeeeeecccCCcCCcchhhhhhcCCCCc
Confidence 127999999999999999999999999988999
Q ss_pred eEEecCceeEEeChhhhhhhcCCCCCeEEEEEeecc
Q psy18082 164 WYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDK 199 (280)
Q Consensus 164 W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~ 199 (280)
||.|||+.|.++++++|.. ..||+|||+++
T Consensus 812 w~~fdDs~v~~~~~~~i~t------~~aY~Lfy~r~ 841 (842)
T KOG1870|consen 812 WYLFDDSSVSEVDEDEIDT------EAAYVLFYRRL 841 (842)
T ss_pred eEEeccccCCCCChhhccc------ccceEEEEEec
Confidence 9999999999999999854 47999966653
No 27
>KOG1872|consensus
Probab=99.84 E-value=4e-22 Score=185.28 Aligned_cols=167 Identities=19% Similarity=0.234 Sum_probs=119.2
Q ss_pred CceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCccc-----cccccccc----ccccc
Q psy18082 2 GPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYT-----FRLDYGVR----KGAES 72 (280)
Q Consensus 2 ~~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~-----~~~~~~~~----~~~~~ 72 (280)
.+..|.|.+.|.+||.+|.|+..||.|....+...|+-..|.||..||...+|++++. .|.+.+.. .....
T Consensus 292 r~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~ 371 (473)
T KOG1872|consen 292 RPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDV 371 (473)
T ss_pred CChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhh
Confidence 3567889999999999999999999999999999999999999999999999999751 12111100 00000
Q ss_pred cccCCCCcchhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCce
Q psy18082 73 NQASTNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGH 151 (280)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGH 151 (280)
..+.... ++.+ .++.. ++....+ .........|+|.|||.|.| +..+||
T Consensus 372 ~~k~~~~--------------~~~~-----~~~~~-------e~~~~~~----~~~s~~~g~y~l~~vithkgrss~sgh 421 (473)
T KOG1872|consen 372 MPKVKGA--------------QERL-----KEVPL-------EGMYNKS----GGKSRNSGLYDLQLVITHKGRSSKSGH 421 (473)
T ss_pred cccccCc--------------Cccc-----ccccc-------cchhccc----cccccccceeeeeEeeeccccccCCCc
Confidence 0000000 0000 00000 0000000 00112267999999999999 999999
Q ss_pred EEEEEEcCCCCCeEEecCceeEEeChhhhhhhcCCCC-CeEEEEEeecc
Q psy18082 152 YYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYSGFEDK 199 (280)
Q Consensus 152 Y~~yir~~~~~~W~~fnD~~V~~v~~~~V~~~~gg~~-~~aY~L~~~~~ 199 (280)
|++|+|. +.++|++|||..|+.|..+.|+...||+. ++||+|.|..+
T Consensus 422 y~aw~r~-s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~ 469 (473)
T KOG1872|consen 422 YVAWNRV-SEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKAR 469 (473)
T ss_pred ceEEEec-cCCceeeccccccccccccceeeecCCCccchhhheeeccc
Confidence 9999999 56799999999999999999999998888 99999955544
No 28
>KOG0944|consensus
Probab=99.82 E-value=1.5e-20 Score=180.26 Aligned_cols=168 Identities=20% Similarity=0.233 Sum_probs=106.8
Q ss_pred CceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccc-----------------
Q psy18082 2 GPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDY----------------- 64 (280)
Q Consensus 2 ~~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~----------------- 64 (280)
++..++|+..|.++|++|+||++||.| ..+...|+...|++|++||++.|+....+..+..
T Consensus 497 ~K~~a~kt~~~ksfP~yLiiqv~rf~~--~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~ 574 (763)
T KOG0944|consen 497 EKKGATKTTRFKSFPDYLIIQVGRFTL--QDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSV 574 (763)
T ss_pred CccccccccccccCCceEEEEeeEEEe--cCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHH
Confidence 578899999999999999999999998 3599999999999999999999988874333221
Q ss_pred ---------cccccccccccCCCCcchh----hccccCCCCCCCCccCCCCCCCCCC-----------------------
Q psy18082 65 ---------GVRKGAESNQASTNQDEEH----CEENQLDPSVSNPVITPYNGDVDEG----------------------- 108 (280)
Q Consensus 65 ---------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 108 (280)
...+.++++...++...+. -...=..+++..+..-+.....+.+
T Consensus 575 i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~ 654 (763)
T KOG0944|consen 575 ISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIK 654 (763)
T ss_pred HHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHH
Confidence 2333334443333322221 1111122333333211110000000
Q ss_pred -------------------CCC---CCCC----CCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCC
Q psy18082 109 -------------------IDI---SHPE----PPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFST 161 (280)
Q Consensus 109 -------------------~~~---~~~~----~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~ 161 (280)
++. +... .+..............+.+|.|.|+|+|+| ++++|||+|+||+ .
T Consensus 655 aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~hirK--e 732 (763)
T KOG0944|consen 655 ALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCHIRK--E 732 (763)
T ss_pred HHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEEEee--c
Confidence 000 0000 000001111123367889999999999999 9999999999999 5
Q ss_pred CCeEEecCceeE
Q psy18082 162 DEWYCFNDQSVT 173 (280)
Q Consensus 162 ~~W~~fnD~~V~ 173 (280)
|+|+.|||++|-
T Consensus 733 gkWVlfNDeKv~ 744 (763)
T KOG0944|consen 733 GKWVLFNDEKVA 744 (763)
T ss_pred CcEEEEcchhhh
Confidence 999999999997
No 29
>KOG1868|consensus
Probab=99.79 E-value=2.9e-20 Score=182.51 Aligned_cols=114 Identities=22% Similarity=0.372 Sum_probs=92.7
Q ss_pred EEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccce-ecCCCCCCCcccccccccccccccccccCCCCcchhhc
Q psy18082 7 KADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSV-ETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCE 85 (280)
Q Consensus 7 ~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (280)
.|++.|++||++|+|||+||.++. +...|....|+||.. +++.++...
T Consensus 532 lK~~~i~~lp~iLiihL~Rf~~~~--~~~~k~~~~v~~~~~~~~~~~~~~~----------------------------- 580 (653)
T KOG1868|consen 532 LKKLTILRLPKILIIHLKRFSSDG--NSFNKLSTGVDFPLREADLSPRFAE----------------------------- 580 (653)
T ss_pred cceeeeecCCHHHHHHHHHhccCc--ccccccceeeccchHhhhhchhccc-----------------------------
Confidence 499999999999999999998775 567899999999995 566554100
Q ss_pred cccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCCeE
Q psy18082 86 ENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWY 165 (280)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W~ 165 (280)
.......|+|+||++|.|++.+|||+||+++...+.|+
T Consensus 581 ------------------------------------------~~~~~~~Y~L~aVv~H~Gtl~sGHYta~~~~~~~~~W~ 618 (653)
T KOG1868|consen 581 ------------------------------------------KGNNPKSYRLYAVVNHSGTLNSGHYTAYVYKNEKQRWF 618 (653)
T ss_pred ------------------------------------------cCCCccceeeEEEEeccCcccCCceEEEEeecCCCceE
Confidence 12223459999999999999999999999987789999
Q ss_pred EecCceeEEeChhhhhhhcCCCCCeEEEEEeecc
Q psy18082 166 CFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDK 199 (280)
Q Consensus 166 ~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~ 199 (280)
.|||+.|+.+...+|. +..||+|||.+.
T Consensus 619 ~fdDs~Vs~~~~~~~~------~s~aYIlFY~~~ 646 (653)
T KOG1868|consen 619 TFDDSEVSPISETDVG------SSSAYILFYERL 646 (653)
T ss_pred EecCeeeecccccccc------CCCceEEEeecC
Confidence 9999999988887774 368999955443
No 30
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.7e-19 Score=156.60 Aligned_cols=119 Identities=14% Similarity=0.199 Sum_probs=86.7
Q ss_pred EEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhh
Q psy18082 5 VYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHC 84 (280)
Q Consensus 5 ~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (280)
..+|++.|.+||++|||||+||. ..|..|..||+.++........ .
T Consensus 295 ss~K~~~I~~lP~~LII~i~RF~------------i~V~~~~kiD~p~gw~~~~~~e-------------------~--- 340 (415)
T COG5533 295 SSRKRMEILVLPDVLIIHISRFH------------ISVMGRKKIDTPQGWKNTASVE-------------------V--- 340 (415)
T ss_pred cchheEEEEecCceEEEEeeeee------------EEeecccccCCCcchhccCCce-------------------e---
Confidence 35799999999999999999994 3677777888877743321000 0
Q ss_pred ccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCCe
Q psy18082 85 EENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEW 164 (280)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W 164 (280)
........+ ..-.+..|.|+||+||.|++.+|||+++++. ++.|
T Consensus 341 ---------------~v~~~f~~~-------------------~~~~P~~Y~L~gv~Ch~G~L~gGHY~s~v~~--~~~W 384 (415)
T COG5533 341 ---------------NVTLLFNNG-------------------IGYIPRKYSLLGVVCHNGTLNGGHYFSEVKR--SGTW 384 (415)
T ss_pred ---------------cccccccCC-------------------CCCCccceeEEEEEeecceecCceeEEeeee--cCce
Confidence 000001111 1223679999999999999999999999998 7999
Q ss_pred EEecCceeEEeChhhhhhhcCCCCCeEEEEEeec
Q psy18082 165 YCFNDQSVTRITDEDIHKSYGGGPARGYYSGFED 198 (280)
Q Consensus 165 ~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~ 198 (280)
+.|||+.|+.++.-. .+..+++|+|||.+
T Consensus 385 ~~~dDs~vr~~~~~t-----~~~~pSsYilFY~r 413 (415)
T COG5533 385 NVYDDSQVRKGSRTT-----SGSHPSSYILFYTR 413 (415)
T ss_pred EEechhheeecccee-----cccCCcceEEEEEe
Confidence 999999999987633 23337899996654
No 31
>KOG1864|consensus
Probab=99.78 E-value=2.9e-19 Score=174.66 Aligned_cols=117 Identities=20% Similarity=0.275 Sum_probs=97.1
Q ss_pred EEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhh
Q psy18082 5 VYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHC 84 (280)
Q Consensus 5 ~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (280)
.++|.+.|..+|.+|+||||||.|........|+...|.||.+|.+...+.+.
T Consensus 452 eae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~--------------------------- 504 (587)
T KOG1864|consen 452 EAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDD--------------------------- 504 (587)
T ss_pred hHHHhccccCCcceeeeehhccccccccccccccccccccccceeeccccccc---------------------------
Confidence 46788999999999999999999998777789999999999999886652211
Q ss_pred ccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCCCC
Q psy18082 85 EENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDE 163 (280)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~~~ 163 (280)
......|.|+|||||.| ++..|||+||+|. .+.
T Consensus 505 --------------------------------------------~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~--~~~ 538 (587)
T KOG1864|consen 505 --------------------------------------------NNPDRKYDLVAVVVHLGSTPNRGHYVAYVKS--LDF 538 (587)
T ss_pred --------------------------------------------cCccceeeEEEEEEeccCCCCCcceEEEEee--CCC
Confidence 11136999999999999 9999999999999 333
Q ss_pred -eEEecCceeEEeChhhhhhhcCCCC-CeEEEE
Q psy18082 164 -WYCFNDQSVTRITDEDIHKSYGGGP-ARGYYS 194 (280)
Q Consensus 164 -W~~fnD~~V~~v~~~~V~~~~gg~~-~~aY~L 194 (280)
|+.|||+.|+.++.+.|.+..|.+. ...|++
T Consensus 539 nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~ 571 (587)
T KOG1864|consen 539 NWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYV 571 (587)
T ss_pred CceecccccccccCcchhhhccCCCccceeeeE
Confidence 9999999999999999988777654 344444
No 32
>KOG1873|consensus
Probab=99.77 E-value=2.5e-20 Score=180.37 Aligned_cols=120 Identities=23% Similarity=0.326 Sum_probs=98.8
Q ss_pred EEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhhc
Q psy18082 6 YKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCE 85 (280)
Q Consensus 6 ~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (280)
+.|++.|..+||||+||||||.-+. .+...|++.+|.|++.+||..||...-
T Consensus 737 akk~~li~~aPpVltihlKrf~q~~-~~~~~k~~~h~~f~E~~dL~~~~~~rc--------------------------- 788 (877)
T KOG1873|consen 737 AKKKVLINKAPPVLTIHLKRFFQDI-RGRLSKLNKHVDFKEFEDLLDYMDFRC--------------------------- 788 (877)
T ss_pred hheeeecccCCceeeehHhhhhhhh-hchhhcccccchHHHHHHHHHHhhhhc---------------------------
Confidence 3899999999999999999996554 366899999999999999999954310
Q ss_pred cccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcC------
Q psy18082 86 ENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNF------ 159 (280)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~------ 159 (280)
.+ ........|+|+|||.|.|++.+|||++|+|..
T Consensus 789 --------------------------~~-------------l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~ 829 (877)
T KOG1873|consen 789 --------------------------SH-------------LDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLS 829 (877)
T ss_pred --------------------------cc-------------cCCcchhhhhhccceeccccccCCcchhhhhccchhhcc
Confidence 00 011245799999999999999999999999862
Q ss_pred --------------CCCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEeec
Q psy18082 160 --------------STDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFED 198 (280)
Q Consensus 160 --------------~~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~ 198 (280)
..++||+..|+.|++|++++|++. .||+|||.|
T Consensus 830 ~~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLks------eAYlLFYER 876 (877)
T KOG1873|consen 830 APSNSKDFESDAGIPSGRWYYISDSIVREVSLDEVLKS------EAYLLFYER 876 (877)
T ss_pred CccccccchhccCCCCcceEEecchheecccHHHHhhh------hhhhhheec
Confidence 257999999999999999999874 699995443
No 33
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.73 E-value=6.1e-19 Score=163.65 Aligned_cols=68 Identities=34% Similarity=0.678 Sum_probs=59.1
Q ss_pred CCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 129 AKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 129 ~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
......|+|+|||+|+|++++|||++|+|+..++.||+|||+.|++++.++|+..-.|++.+||+|+|
T Consensus 275 ~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Y 342 (343)
T cd02666 275 DLKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVY 342 (343)
T ss_pred ccCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEe
Confidence 44678999999999999889999999999977799999999999999999988653445579999943
No 34
>KOG1863|consensus
Probab=99.68 E-value=1.5e-17 Score=173.97 Aligned_cols=124 Identities=23% Similarity=0.364 Sum_probs=104.2
Q ss_pred eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082 4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH 83 (280)
Q Consensus 4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (280)
..++|...+.+||++|.|||+||.|+..++...|++.+++||..|+|.+|+.. .
T Consensus 347 ~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~-~------------------------- 400 (1093)
T KOG1863|consen 347 QDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSR-F------------------------- 400 (1093)
T ss_pred hhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccc-c-------------------------
Confidence 34667799999999999999999999999999999999999999999999532 0
Q ss_pred hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082 84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE 163 (280)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~ 163 (280)
.++ .......|.|+||++|.|.+++|||++|++....++
T Consensus 401 ------------------------~~~-----------------~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~~ 439 (1093)
T KOG1863|consen 401 ------------------------KAE-----------------ESERSAVYSLHAVLVHSGDAHSGHYVAYINPKLDGK 439 (1093)
T ss_pred ------------------------chh-----------------hhhccceeccchhhcccccccCccceeeecchhhcc
Confidence 000 011226999999999988999999999999878999
Q ss_pred eEEecCceeEEeChhhhhh-hcCCCC---Ce------EEEE
Q psy18082 164 WYCFNDQSVTRITDEDIHK-SYGGGP---AR------GYYS 194 (280)
Q Consensus 164 W~~fnD~~V~~v~~~~V~~-~~gg~~---~~------aY~L 194 (280)
|++|||..|+.++..+++. ++|+.. .. ||+|
T Consensus 440 w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~l 480 (1093)
T KOG1863|consen 440 WVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYML 480 (1093)
T ss_pred ceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceE
Confidence 9999999999999988765 677765 23 7888
No 35
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1e-14 Score=136.76 Aligned_cols=180 Identities=19% Similarity=0.233 Sum_probs=105.5
Q ss_pred CceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccce--ecCCCCCCCcccccccc---------------
Q psy18082 2 GPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSV--ETNSPSSEPQYTFRLDY--------------- 64 (280)
Q Consensus 2 ~~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~--Ldl~~~~~~~~~~~~~~--------------- 64 (280)
|++.++++..|..||++||||..||.+ ..+...|+...+.+-.. +++++||+..-+.-+..
T Consensus 485 ~K~~a~~k~~~kslPk~LIlq~~R~~l--qny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I 562 (749)
T COG5207 485 GKKKASRKPFIKSLPKYLILQVGRYSL--QNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLI 562 (749)
T ss_pred CcccccccchhhccCceeEEecceeec--cceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHH
Confidence 677889999999999999999999955 45788899888888663 89999988732111111
Q ss_pred --------cccccccccccCCCCcchh----hccccCCCCCCCCc-----cCCCCCCCCCCC---------C--------
Q psy18082 65 --------GVRKGAESNQASTNQDEEH----CEENQLDPSVSNPV-----ITPYNGDVDEGI---------D-------- 110 (280)
Q Consensus 65 --------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~---------~-------- 110 (280)
...+..+++...++...+. -...-..++...|. ....+.++++.. .
T Consensus 563 ~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal 642 (749)
T COG5207 563 RQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKAL 642 (749)
T ss_pred HHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHH
Confidence 2222333333333322211 11111122222222 111111221110 0
Q ss_pred -------------------CCCCC--CCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCCC--CeEE
Q psy18082 111 -------------------ISHPE--PPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTD--EWYC 166 (280)
Q Consensus 111 -------------------~~~~~--~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~~--~W~~ 166 (280)
-.-++ .+...+.++....-.....|.|.|||+|.| ++++|||++|||+...+ +|+.
T Consensus 643 ~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl 722 (749)
T COG5207 643 MDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVL 722 (749)
T ss_pred HHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccCcceeEEE
Confidence 00011 111111222222223334599999999999 99999999999996554 6899
Q ss_pred ecCceeEEeChhhhhhh
Q psy18082 167 FNDQSVTRITDEDIHKS 183 (280)
Q Consensus 167 fnD~~V~~v~~~~V~~~ 183 (280)
|||++|-.++.-++++.
T Consensus 723 ~nDek~v~~~svE~~k~ 739 (749)
T COG5207 723 KNDEKTVLNSSVEVLKD 739 (749)
T ss_pred EccchheehhhHHHHhh
Confidence 99999988877666553
No 36
>KOG1871|consensus
Probab=99.53 E-value=3e-15 Score=136.60 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=103.6
Q ss_pred CceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCC-cccccccccccccccccccCCCCc
Q psy18082 2 GPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEP-QYTFRLDYGVRKGAESNQASTNQD 80 (280)
Q Consensus 2 ~~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
..|++++++.|.+||++|++|||||.|.. ++...|+-..++||-.|.+..-|-. .++.+
T Consensus 289 ~eV~~s~q~~leklp~vlilhlkrF~ye~-tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~~------------------- 348 (420)
T KOG1871|consen 289 QEVEASSQTTLEKLPPVLILHLKRFVYEK-TGGARKLGKKIEYPWTLKISKNCFSQGLKIR------------------- 348 (420)
T ss_pred CeechhhhhhHhhcchhhhhhhhHHHHHh-ccchhhhchhhhccceeeechhhhccccchh-------------------
Confidence 35788999999999999999999998875 5889999999999999877653211 11000
Q ss_pred chhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcC
Q psy18082 81 EEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNF 159 (280)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~ 159 (280)
.......|.|.||+.|+| ++..|||+.-+.+-
T Consensus 349 -----------------------------------------------~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s 381 (420)
T KOG1871|consen 349 -----------------------------------------------ILIATRPYKSLAVVYHTGTSATVGHYLEDVSRS 381 (420)
T ss_pred -----------------------------------------------hhccccccceEEEEEecccccccCceEEeeeec
Confidence 022345899999999999 99999999999997
Q ss_pred CCCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEeec
Q psy18082 160 STDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFED 198 (280)
Q Consensus 160 ~~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~ 198 (280)
.-+.|+++||..|..+..++|++-.+. .+||+|||.+
T Consensus 382 ~~~gw~rIDD~~i~~v~q~dv~~~t~~--r~~yllyY~~ 418 (420)
T KOG1871|consen 382 VPSGWQRIDDALILFVAQEDVEKVTGS--RTPYLLYYIE 418 (420)
T ss_pred ccCceeEeccceeeeccHhhhccccCc--cchheeEeee
Confidence 778999999999999999999874333 6788886654
No 37
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.44 E-value=4.1e-13 Score=122.33 Aligned_cols=102 Identities=17% Similarity=0.084 Sum_probs=80.9
Q ss_pred EEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhh
Q psy18082 5 VYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHC 84 (280)
Q Consensus 5 ~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (280)
..+.+..|.+||+||.|.++|+... . ....|+...+.+|..+++..++..+...
T Consensus 191 ~~~~~r~i~~LPpVL~In~~~~~~~-~-~w~~~~~~~~~ip~~i~~~~~~~~~~~~------------------------ 244 (295)
T PF13423_consen 191 PTEQRRTIRSLPPVLSINLNRYSEE-E-FWPKKNWLKIWIPPSINLPHFIADDSQS------------------------ 244 (295)
T ss_pred ceeeeeeccCCCcEEEEEccCCCcc-c-ccccccCCceecceeeeccccccccccc------------------------
Confidence 3556777899999999999999877 3 4489999999999999999885432100
Q ss_pred ccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCC--C
Q psy18082 85 EENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFS--T 161 (280)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~--~ 161 (280)
.. .......+|+|.|+|+|.| +..+|||++|+|... +
T Consensus 245 ---------------------~~-------------------~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~ 284 (295)
T PF13423_consen 245 ---------------------DL-------------------EGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDD 284 (295)
T ss_pred ---------------------cc-------------------cCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCC
Confidence 00 0133568999999999999 899999999999853 3
Q ss_pred CCeEEecCcee
Q psy18082 162 DEWYCFNDQSV 172 (280)
Q Consensus 162 ~~W~~fnD~~V 172 (280)
.+||.|||-.|
T Consensus 285 ~~W~lFNDflV 295 (295)
T PF13423_consen 285 SQWYLFNDFLV 295 (295)
T ss_pred CcEEEECcEeC
Confidence 79999999665
No 38
>KOG2026|consensus
Probab=98.82 E-value=4.4e-09 Score=96.37 Aligned_cols=101 Identities=18% Similarity=0.120 Sum_probs=82.7
Q ss_pred EEEecccCCcceEEEEEEEEEeCCcceeeccccceecc-ceecCCCCCCCcccccccccccccccccccCCCCcchhhcc
Q psy18082 8 ADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVT-SVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEE 86 (280)
Q Consensus 8 K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (280)
++..+.++|++||+|+||| +.+++...|+.+.|+|| ..+|+.+++.....
T Consensus 327 ~rf~l~k~P~ylifh~~rF--~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~--------------------------- 377 (442)
T KOG2026|consen 327 MRFRLTKLPRYLIFHMKRF--KKNNFFKEKNPTLVEFPYSEVDILHVLDRLKA--------------------------- 377 (442)
T ss_pred hheeeecCCceEEEEeeec--cccCcccccCCceeeccCCccchhhhhhhccc---------------------------
Confidence 7889999999999999999 56668999999999999 45777776322100
Q ss_pred ccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCCeEE
Q psy18082 87 NQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYC 166 (280)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W~~ 166 (280)
....-..|.|.|-++|- .+-|||...++++++++||.
T Consensus 378 -----------------------------------------~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~kW~e 414 (442)
T KOG2026|consen 378 -----------------------------------------VNHKVTQYSLVANAIHE--DEDGNFRIQIYDNSSEKWYE 414 (442)
T ss_pred -----------------------------------------ccCccccccchhhhhcC--cccCceEEEEEeCCCcceEE
Confidence 01112589999999997 67899999999999999999
Q ss_pred ecCceeEEeChhhh
Q psy18082 167 FNDQSVTRITDEDI 180 (280)
Q Consensus 167 fnD~~V~~v~~~~V 180 (280)
+.|-.|++...+-|
T Consensus 415 iqdl~v~e~~~qmi 428 (442)
T KOG2026|consen 415 IQDLHVTERLPQMI 428 (442)
T ss_pred ecccchhhhhhHHH
Confidence 99999999887765
No 39
>KOG1275|consensus
Probab=98.12 E-value=2.2e-05 Score=79.08 Aligned_cols=136 Identities=16% Similarity=0.065 Sum_probs=87.0
Q ss_pred EEEEecccCCcceEEEEEEEEEeCCcceee--ccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhh
Q psy18082 7 KADALSSKHIKLAIHQDKVVDFSGTTSENI--TIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHC 84 (280)
Q Consensus 7 ~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~--Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (280)
+.+..|..||.+|.|...-+.-...++.+. |.-..|-+|+.+.|..--...+.. ......
T Consensus 714 ~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v------------~~~s~~------ 775 (1118)
T KOG1275|consen 714 SQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLV------------STISDL------ 775 (1118)
T ss_pred ccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceee------------eeeccc------
Confidence 455678899999999998885433333333 446678888887776541110000 000000
Q ss_pred ccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcC----
Q psy18082 85 EENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNF---- 159 (280)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~---- 159 (280)
+.... +..+...-.+|+|.|+|+|.| +-..+|.+++||.-
T Consensus 776 -------------------~~~~~----------------~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~ 820 (1118)
T KOG1275|consen 776 -------------------DVSPL----------------PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYH 820 (1118)
T ss_pred -------------------cCCCC----------------ccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCccc
Confidence 00000 011234458999999999999 77999999999962
Q ss_pred ----CCCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082 160 ----STDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF 196 (280)
Q Consensus 160 ----~~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~ 196 (280)
.+.+||.|||-.|.+++++|.+.--| .=..+-+|||
T Consensus 821 ~~~~~dsqWylFNDfLV~~ite~EAl~~~~-~WKvP~Il~Y 860 (1118)
T KOG1275|consen 821 VIKPDDSQWYLFNDFLVSEITEEEALHFDG-PWKVPAILYY 860 (1118)
T ss_pred ccCcCcceeEEEcceeeeeCChHHheEecc-CccCcEEEEE
Confidence 24699999999999999999654321 1145667755
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=91.35 E-value=0.45 Score=42.36 Aligned_cols=38 Identities=18% Similarity=0.450 Sum_probs=31.9
Q ss_pred CceeEEEEEEEEEeecCCCceEEEEEEcCCCCCeEEecCce
Q psy18082 131 GPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQS 171 (280)
Q Consensus 131 ~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W~~fnD~~ 171 (280)
....|++.+||--.- +--|+++|+++ .+|.|..|||-+
T Consensus 215 eg~~Y~Vt~VIQY~~--~~~HFvtWi~~-~dGsWLecDDLk 252 (275)
T PF15499_consen 215 EGCLYQVTSVIQYQA--NLNHFVTWIRD-SDGSWLECDDLK 252 (275)
T ss_pred cCeeEEEEEEEEEec--cCceeEEEEEc-CCCCeEeeccCC
Confidence 456899999997764 35899999999 689999999965
No 41
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=86.37 E-value=1.3 Score=37.41 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=26.2
Q ss_pred EEee-c-CCCceEEEEEEcCCCCCeEEecCceeEEeChhh
Q psy18082 142 IHSG-S-ASGGHYYAYIKNFSTDEWYCFNDQSVTRITDED 179 (280)
Q Consensus 142 ~H~G-s-~~sGHY~~yir~~~~~~W~~fnD~~V~~v~~~~ 179 (280)
.|.| . -..||-+.|++- .+.||++||+.+-..+++-
T Consensus 129 f~agi~~~g~~Havfa~~t--s~gWy~iDDe~~y~~tPdp 166 (193)
T PF05408_consen 129 FHAGIFLKGQEHAVFACVT--SDGWYAIDDEDFYPWTPDP 166 (193)
T ss_dssp EEEEEEEESTTEEEEEEEE--TTCEEEEETTEEEE----G
T ss_pred hhhHheecCCcceEEEEEe--eCcEEEecCCeeeeCCCCh
Confidence 3556 3 347999999987 8899999999999887643
No 42
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=57.90 E-value=9.9 Score=19.54 Aligned_cols=14 Identities=21% Similarity=1.058 Sum_probs=10.5
Q ss_pred EEEcCCCCCeEEecCc
Q psy18082 155 YIKNFSTDEWYCFNDQ 170 (280)
Q Consensus 155 yir~~~~~~W~~fnD~ 170 (280)
+++. ++.||.|+++
T Consensus 3 W~~~--~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD--NGNWYYFDSD 16 (19)
T ss_dssp EEEE--TTEEEEETTT
T ss_pred CEEE--CCEEEEeCCC
Confidence 4555 7899999875
No 43
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=42.80 E-value=40 Score=27.89 Aligned_cols=31 Identities=19% Similarity=0.470 Sum_probs=24.8
Q ss_pred EEEEEEEeecCCCceEEEEEEcCCCCCeEEecCceeE
Q psy18082 137 LFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVT 173 (280)
Q Consensus 137 L~aVi~H~Gs~~sGHY~~yir~~~~~~W~~fnD~~V~ 173 (280)
..|+|++ ..-|++|..|- +|.||-+|-..-.
T Consensus 99 ~~gfI~N----~~~HWf~iRki--~~~wyNLDS~l~~ 129 (157)
T PF02099_consen 99 EFGFICN----LSRHWFAIRKI--GGQWYNLDSKLKE 129 (157)
T ss_dssp SSEEEEE----CTTEEEEEEEE--TTEEEEECTTTSS
T ss_pred ceEEEec----cCcceEEEEee--CCeeEeccCCCCC
Confidence 4788888 56899998887 9999999865433
No 44
>KOG1887|consensus
Probab=42.52 E-value=20 Score=37.01 Aligned_cols=55 Identities=16% Similarity=0.304 Sum_probs=42.6
Q ss_pred CCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCCeE--EecCceeEEe-ChhhhhhhcCC
Q psy18082 128 NAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWY--CFNDQSVTRI-TDEDIHKSYGG 186 (280)
Q Consensus 128 ~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W~--~fnD~~V~~v-~~~~V~~~~gg 186 (280)
.......|+|++++.-... +++|.|+... .+.|+ +.+|..+..+ ++..|.+..|.
T Consensus 720 g~ep~t~yrLVSmv~~~e~--~~~~~C~Aye--~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e 777 (806)
T KOG1887|consen 720 GLEPNTKYRLVSMVGNHEE--GEEYICFAYE--PNRWVSLRHEDSQGEVVGDWKDVVRFCGE 777 (806)
T ss_pred ccCcCceeEEEEEeeeccc--cceEEEeecc--CCcchhhHHHHHHhhhccchHHHHHHHhc
Confidence 3456689999999865543 7999999998 66777 9999998888 66778775554
No 45
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=32.83 E-value=93 Score=24.51 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=26.2
Q ss_pred EEEEEEEEeecCCCceEEEEEEcCCCCCeEEecCceeEEeChhh
Q psy18082 136 ELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDED 179 (280)
Q Consensus 136 ~L~aVi~H~Gs~~sGHY~~yir~~~~~~W~~fnD~~V~~v~~~~ 179 (280)
-+.|||+-.-.. |.|. +|.|.+|||.-+--++.+.
T Consensus 57 V~~AViVRtkk~-------~rR~--DGs~i~FddNA~Viin~~g 91 (122)
T COG0093 57 VVKAVVVRTKKE-------VRRP--DGSYIKFDDNAAVIINPDG 91 (122)
T ss_pred eEEEEEEEeCCc-------eEcC--CCCEEEeCCceEEEECCCC
Confidence 467888876521 4554 9999999999988887753
No 46
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=22.56 E-value=1.1e+02 Score=20.34 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=17.5
Q ss_pred CCCceEEEEEEcCCCCCeEEecC
Q psy18082 147 ASGGHYYAYIKNFSTDEWYCFND 169 (280)
Q Consensus 147 ~~sGHY~~yir~~~~~~W~~fnD 169 (280)
....|.+.-++. ++.|+.||=
T Consensus 46 ~~~~H~W~ev~~--~~~W~~~D~ 66 (68)
T smart00460 46 IWEAHAWAEVYL--EGGWVPVDP 66 (68)
T ss_pred CCCcEEEEEEEE--CCCeEEEeC
Confidence 467899999998 589999973
No 47
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=22.12 E-value=1.2e+02 Score=25.52 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=20.8
Q ss_pred EEEEEEee-cCCCceEEEEEEcCCCCCeEEecC
Q psy18082 138 FSIMIHSG-SASGGHYYAYIKNFSTDEWYCFND 169 (280)
Q Consensus 138 ~aVi~H~G-s~~sGHY~~yir~~~~~~W~~fnD 169 (280)
.|||+--| ...+=|+.++.-+|.+...|.||-
T Consensus 21 cAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDP 53 (183)
T PF00770_consen 21 CAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDP 53 (183)
T ss_dssp EEEEESS-TTT--S-EEEEEEETTTTEEEEE-T
T ss_pred eEEEecCCcccCceeEEEEEecCCcceEEEeCC
Confidence 56666655 445559999999988888888764
No 48
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=21.71 E-value=1.3e+02 Score=27.84 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=20.2
Q ss_pred EeecCCCceEEEEEEcCCCCCeEEecCceeEEeChhh
Q psy18082 143 HSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDED 179 (280)
Q Consensus 143 H~Gs~~sGHY~~yir~~~~~~W~~fnD~~V~~v~~~~ 179 (280)
-.|+..+|||+ |.+. ... .+|=..+...+...
T Consensus 267 F~G~~~~GHYt-~~~~--~~~--~~Dg~~~~k~~~~~ 298 (320)
T PF08715_consen 267 FTGSTDSGHYT-HDVA--GKA--MYDGDKVKKFSDNK 298 (320)
T ss_dssp EESCTTTCEEE-EEEE--SSS--EEETTEEEEESEEE
T ss_pred EEcCCCccceE-EEcc--Cce--eEEcCcccccCccc
Confidence 47988999999 7765 222 34555566555533
No 49
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=20.96 E-value=69 Score=23.22 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=14.4
Q ss_pred CCCceEEEEEEcCCCCCeEEec
Q psy18082 147 ASGGHYYAYIKNFSTDEWYCFN 168 (280)
Q Consensus 147 ~~sGHY~~yir~~~~~~W~~fn 168 (280)
.++|+|.|+.++.. ..|-.-.
T Consensus 63 ~~~G~Y~C~~~~~~-~~~S~~S 83 (91)
T cd05751 63 EHAGRYRCYYRSGV-ALWSEPS 83 (91)
T ss_pred hHCEEEEEEEECCC-CccCCCC
Confidence 46899999999832 4554433
No 50
>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle. This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.
Probab=20.71 E-value=2.1e+02 Score=22.59 Aligned_cols=33 Identities=9% Similarity=0.299 Sum_probs=25.0
Q ss_pred EEEEEEeecCCCceEEEEEEcCCCCCeEEecCceeEEeChhh
Q psy18082 138 FSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDED 179 (280)
Q Consensus 138 ~aVi~H~Gs~~sGHY~~yir~~~~~~W~~fnD~~V~~v~~~~ 179 (280)
.|||++.-- .+.|. +|.|++|||.-|--++.+.
T Consensus 59 ~AvIVrtkk-------~~~r~--dG~~i~F~~Na~VLin~~~ 91 (122)
T TIGR01067 59 KAVIVRTKK-------GVRRK--DGSYIRFDDNACVLINKNK 91 (122)
T ss_pred EEEEEEeec-------ceEeC--CCCEEECCCceEEEECCCC
Confidence 688888752 13343 8999999999999988753
Done!