RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18082
(280 letters)
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 96.9 bits (242), Expect = 2e-23
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 113 HPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSV 172
+ K S Y+YEL +++HSG A GGHYY+YIK+ +WY FND V
Sbjct: 234 GLAKKEGDSEKKDS----ESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVV 289
Query: 173 TRITDEDIHKSYGGGPARGYYSGFEDKVVDFSGTTS 208
T D + GG ++ F TT+
Sbjct: 290 TPFDPNDAEEECFGGE--ETQKTYDSGPRAFKRTTN 323
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 80.2 bits (198), Expect = 1e-17
Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 117 PSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRI 175
P S + S + G Y YEL ++++HSG SA GHY AY+K+ S +WY FND VT +
Sbjct: 175 PYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEV 234
Query: 176 TDEDIHKSYG 185
++E++ +
Sbjct: 235 SEEEVLEFGS 244
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 76.3 bits (188), Expect = 4e-16
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 124 DPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHK 182
+ + P YEL ++++HSG S SGGHY AYIK ++W F+D+ V+ +T+E++ +
Sbjct: 246 EELEGEEPPTKYELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTEEEVLR 305
Query: 183 SYG 185
S
Sbjct: 306 SSA 308
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 73.9 bits (182), Expect = 1e-15
Identities = 23/53 (43%), Positives = 38/53 (71%)
Query: 131 GPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
GP+ Y+L++++ H GS +GGHY AY KN T++WY F+D VT++++ + S
Sbjct: 170 GPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSS 222
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 69.3 bits (170), Expect = 1e-13
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 134 VYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPA 189
YEL +++ H G SA GHY A+++ + +W F+D V+ +T+EDI K GGG
Sbjct: 240 YYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDW 296
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 63.4 bits (154), Expect = 3e-11
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 117 PSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRIT 176
P D S N+ VY L+ +++HSG GHYYA +K WY F+D VTR T
Sbjct: 415 PFLDRDADKSENSD--AVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRAT 472
Query: 177 D-EDIHKSYGGGPA 189
+ E + +++GG
Sbjct: 473 EKEVLEENFGGDHP 486
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 61.0 bits (148), Expect = 1e-10
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 133 YVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDI 180
Y Y L ++ IH G AS GHY+ YIK+F + W +ND++VT + ++
Sbjct: 279 YGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEV 326
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 60.4 bits (147), Expect = 1e-10
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 131 GPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIH--KSY 184
GP Y+L+++++HSG S GHYY Y+K+ S +WY +D V+ ++ E + K+Y
Sbjct: 244 GPLKYKLYAVLVHSGFSPHSGHYYCYVKS-SNGKWYNMDDSKVSPVSIETVLSQKAY 299
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 228
Score = 59.5 bits (144), Expect = 2e-10
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHK-SYGGGPARGYY 193
YEL ++++H G A+ GHY+AYI S EW +ND SVT + E++ + S+GGG Y
Sbjct: 164 YELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAY 223
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 60.7 bits (147), Expect = 2e-10
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 134 VYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
+Y+L+++ H G SGGHY AY +NF+ + WY F+D +T + ED S
Sbjct: 763 IYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTS 812
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 59.7 bits (145), Expect = 2e-10
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 131 GPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRIT 176
G YVYEL ++IH G SA GHY A+IK+ T EWY FND+ V +
Sbjct: 242 GSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMP 288
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 57.8 bits (140), Expect = 1e-09
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 118 STSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITD 177
S+ S + Y Y+LF++++H G+ GHY AY + +W+ F+D +TR+++
Sbjct: 256 SSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQ-GDGQWFKFDDAMITRVSE 314
Query: 178 EDIHKSYGG 186
E++ KS
Sbjct: 315 EEVLKSQAY 323
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 46.1 bits (110), Expect = 7e-06
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 135 YELFSIMIHSGS-ASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPA 189
YEL ++++H G + GHY + +K S W F+D++V +I + + + +G P
Sbjct: 237 YELVAVVVHIGGGPNHGHYVSIVK--SHGGWLLFDDETVEKIDENAVEEFFGDSPN 290
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 45.0 bits (106), Expect = 2e-05
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 125 PSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRIT 176
+ P Y L ++ H+G+ +GGHY++ +K + W ++D V + +
Sbjct: 347 NNGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVKR--SGTWNVYDDSQVRKGS 396
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 43.9 bits (104), Expect = 4e-05
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 131 GPYVYELFSIMIHSG-SASGGHYYAYIK--NFSTDEWYCFNDQSVTRITDEDIHKSYG 185
GP YEL + + H G S GHY A+IK +W FND+ V D K G
Sbjct: 248 GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLG 305
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 41.4 bits (97), Expect = 3e-04
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 134 VYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRITDED 179
VY LF++++HSG + S GHY AY++ W F+D V ++D
Sbjct: 271 VYRLFAVVMHSGATISSGHYTAYVR------WLLFDDSEVKVTEEKD 311
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 41.3 bits (97), Expect = 3e-04
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 21/76 (27%)
Query: 134 VYELFSIMIHSGSAS-GGHYYAYIKNFS--------------------TDEWYCFNDQSV 172
Y L+++++HSG +S GHY+ Y ++ + + WY FND V
Sbjct: 242 HYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRV 301
Query: 173 TRITDEDIHKSYGGGP 188
T + E + P
Sbjct: 302 TFSSFESVQNVTSRFP 317
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 268
Score = 39.0 bits (91), Expect = 0.001
Identities = 36/185 (19%), Positives = 58/185 (31%), Gaps = 40/185 (21%)
Query: 27 DFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFR--LDYGVRKGAESNQASTNQDEEHC 84
FS TS N L+ S+ S + + TF L + + T + C
Sbjct: 88 PFSCGTSRNSV--SLLYTLSLPLGSTKTSKESTFLQLLKRSL-----DLEKVTKAWCDTC 140
Query: 85 EENQLDPSVSNPVITPYNGDVDEGI------------DISHPEP--------PSTSATKD 124
+ Q ++ I + + DI+ P S A
Sbjct: 141 CKYQPLEQTTS--IRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDH 198
Query: 125 PSMNA----KGPYVYELFSIMIH-SGSASGGHY---YAYIKNFST-DEWYCFNDQSVTRI 175
+ + Y YEL + + S+ G H + ST WY FND VT +
Sbjct: 199 DKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPV 258
Query: 176 TDEDI 180
++
Sbjct: 259 SELAY 263
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 38.5 bits (90), Expect = 0.002
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 20/69 (28%)
Query: 133 YVYELFSIMIHSGSASGGHYYAY--------------------IKNFSTDEWYCFNDQSV 172
+Y L ++++H GS S GHY Y + ++ W+ +D +V
Sbjct: 161 VLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTV 220
Query: 173 TRITDEDIH 181
+++ ++
Sbjct: 221 KEVSESEVL 229
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 36.6 bits (85), Expect = 0.009
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 134 VYELFSIMIHSGSASGGHYYAYIK 157
+Y L+ ++ HSG+ GHY AY+K
Sbjct: 201 LYRLYGVVEHSGTMRSGHYVAYVK 224
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 35.4 bits (81), Expect = 0.027
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 86 ENQLDPSVSNPVITPYNGDVDEGI-------DISHPEPPSTSATKDPSMNA--KGPYVYE 136
EN L+P++ + N D + D + PEP + + + Y
Sbjct: 630 ENGLNPNLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYA 689
Query: 137 LFSIMIHSG-SASGGHYYAYIKNFSTD--EWYCFNDQSVTRITDEDIHKSYG 185
L +++ H G S GHY +I+ D +W ND+ + ++ K G
Sbjct: 690 LTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNG 741
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 35.1 bits (81), Expect = 0.030
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 95 NPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIH-SGSASGGHYY 153
N D+ I + H + P G + YEL ++ H S GH
Sbjct: 219 NWSRLNTFVDIPLEIRLPHFIQDDEMVNEGP---LSGNFKYELQGVVCHIGDSTHSGHLV 275
Query: 154 AYIKNFST--DEWYCFNDQSV 172
++I+ + D+WY FND V
Sbjct: 276 SFIRVAPSEDDQWYLFNDFLV 296
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 32.4 bits (74), Expect = 0.30
Identities = 12/79 (15%), Positives = 30/79 (37%)
Query: 70 AESNQASTNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNA 129
N A Q + E++ ++PSV++ + + + D + + S T + +
Sbjct: 479 DADNSAVPEQIDSTAEQSVVNPSVTDTQVDDTSASNNSAADNTVDDNYSAEDTLESNGLD 538
Query: 130 KGPYVYELFSIMIHSGSAS 148
+G Y + + +
Sbjct: 539 EGDYAQDSAPLDAYQDDYV 557
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 31.3 bits (71), Expect = 0.37
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 135 YELFSIMIHSG-SASGGHYYAYIKNFST-DEW-YCFNDQSVTRITDEDIHKS 183
Y L +++ H G S GHY AY K W YC +D + ++ D+ +
Sbjct: 184 YSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYC-SDDEIRPVSKNDVSTN 234
>gnl|CDD|219471 pfam07574, SMC_Nse1, Nse1 non-SMC component of SMC5-6 complex. S.
cerevisiae Nse1 forms part of a complex with SMC5-SMC6
This non-structural maintenance of chromosomes (SMC)
complex plays an essential role in genomic stability,
being involved in DNA repair and DNA metabolism. It is
conserved in eukaryotes from yeast to human.
Length = 180
Score = 28.1 bits (63), Expect = 3.8
Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 15/70 (21%)
Query: 147 ASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDKVVDFSGT 206
G YY Y+ + + T + E++ ++ D + D
Sbjct: 71 PDGERYYVYVNTVADPI-----SKMATTFSAEELE----------FFKKLIDLIADSEDA 115
Query: 207 TSENITIEDL 216
+ I +
Sbjct: 116 EAAIIAAVNE 125
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 28.1 bits (63), Expect = 6.2
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 135 YELFSIMIHSGSASG-GHYYAYIKNFSTDEWYCFNDQSVTRITDEDI 180
Y L + ++H G+ G + +++ ST++W+ D +V + + I
Sbjct: 383 YNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLI 429
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.128 0.370
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,776,034
Number of extensions: 1257775
Number of successful extensions: 721
Number of sequences better than 10.0: 1
Number of HSP's gapped: 709
Number of HSP's successfully gapped: 32
Length of query: 280
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 184
Effective length of database: 6,679,618
Effective search space: 1229049712
Effective search space used: 1229049712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.2 bits)