RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18082
(280 letters)
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 80.0 bits (197), Expect = 3e-17
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 118 STSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITD 177
+ K +YEL I+ H G+ + GHY A+ K S +W+ FND V+ I+
Sbjct: 399 TKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI-SGGQWFKFNDSMVSSISQ 457
Query: 178 EDIHKS 183
E++ K
Sbjct: 458 EEVLKE 463
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease,
substrate ENZY complex, hydrolase-protein binding
complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A
2ibi_A
Length = 348
Score = 79.1 bits (195), Expect = 4e-17
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 128 NAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
VY L+++ HSG+ GGHY AY ++ T EW+ FND SVT ++ + S
Sbjct: 277 ENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTS 332
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes,
DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo
sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Length = 404
Score = 77.4 bits (190), Expect = 2e-16
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 114 PEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSV 172
E + + + Y+L +++ H G S+S GHY +++K DEW F+D V
Sbjct: 307 KEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKV 365
Query: 173 TRITDEDIHKSYGGGPARGYY 193
+ +T EDI + GGG Y
Sbjct: 366 SIVTPEDILRLSGGGDWHIAY 386
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 76.8 bits (189), Expect = 2e-16
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 128 NAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGG 187
+ K P Y L ++++HSG GGHY Y+ +W F+D V+R T E+ + GG
Sbjct: 234 DPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGG 293
Query: 188 PARGY 192
Sbjct: 294 HDDDL 298
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo
sapiens}
Length = 367
Score = 73.0 bits (179), Expect = 5e-15
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 126 SMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
+ PYVY+L ++ H G+ GHY AY KN +WY F+D +V+ +++ I
Sbjct: 291 CNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTK 348
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 73.5 bits (180), Expect = 7e-15
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 128 NAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGG 187
+ K P Y L ++++HSG GGHY Y+ +W F+D V+R T E+ + GG
Sbjct: 403 DPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGG 462
Query: 188 PARGY 192
Sbjct: 463 HDDDL 467
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 68.8 bits (168), Expect = 2e-13
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 126 SMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
Y LFS+ H G GGHY AY KN + W+ F+D V+ I+ + S
Sbjct: 328 IGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSS 385
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural
genomics consortium, SGC, activator, alternative
splicing, chromatin regulator, nucleus, polymorphism,
protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A
Length = 355
Score = 67.8 bits (165), Expect = 4e-13
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 128 NAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
+ G VY+L+++ HSGS GHY A + W+ +ND V+ +++ + S
Sbjct: 287 DKAGSPVYQLYALCNHSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVSENQVASS 340
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Length = 415
Score = 67.6 bits (164), Expect = 5e-13
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 7/132 (5%)
Query: 64 YGVRKGAESNQASTNQDEEHCEENQLDPSVSNPVITP---YNGDVDEGIDISHPEPPSTS 120
VR + N+ E + + DPS S V+TP Y V
Sbjct: 270 VKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYK 329
Query: 121 ATKDPSMNAKG--PYVYELFSIMIHSG-SASGGHYYAYIKNF-STDEWYCFNDQSVTRIT 176
P++ VY L ++ H G ++ GHY A+I++ ++WY FND V+ +
Sbjct: 330 KHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVE 389
Query: 177 DEDIHKSYGGGP 188
E I GGG
Sbjct: 390 KEKIESLAGGGE 401
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 58.8 bits (141), Expect = 7e-10
Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 86 ENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG 145
E +D S+ +D S + + GP Y+LF+ + H G
Sbjct: 749 ERAVDWIFSHIDDLDAEAAMDISEGRS-AADSISESVPVGPKVRDGPGKYQLFAFISHMG 807
Query: 146 -SASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSY 184
S GHY +IK W +NDQ V Y
Sbjct: 808 TSTMCGHYVCHIK--KEGRWVIYNDQKVCASEKPPKDLGY 845
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.063
Identities = 32/151 (21%), Positives = 49/151 (32%), Gaps = 42/151 (27%)
Query: 109 IDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYI---KNFSTDEWY 165
+DI P + + KG + E +S MI G I N + Y
Sbjct: 1662 LDIVINNPVNLTIHFGG---EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS-Y 1717
Query: 166 CFNDQ----SVTRITD-----------EDIHKSYGGGPARGYYSG--------------- 195
F + S T+ T ED+ KS G PA ++G
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDL-KSKGLIPADATFAGHSLGEYAALASLADV 1776
Query: 196 --FED--KVVDFSGTTSENITIEDLMGVTSV 222
E +VV + G T + D +G ++
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNY 1807
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling,
linkage specificity, deubiquitinating enzyme, Lys63-
linked, anti-oncogene; 2.8A {Homo sapiens}
Length = 374
Score = 30.1 bits (67), Expect = 0.75
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 117 PSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRIT 176
P D ELF+++ HY A++K D + F D R
Sbjct: 259 PKDLPDWDWRHGCIPCQNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDSMADRDG 314
Query: 177 DEDIH 181
++
Sbjct: 315 GQNGF 319
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain,
peptide binding; NMR {Homo sapiens}
Length = 124
Score = 26.4 bits (58), Expect = 6.4
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 167 FNDQSVTRITDEDIHKSYG-GGPARGYYSGFEDKVVDFSGTTSENITIEDLMGVTSVETN 225
F S TD ++ Y G + +++ ++ E+I L +E N
Sbjct: 65 FPGVSFGISTDSEVLTHYNITGNTICLFRLVDNEQLNLEDEDIESIDATKLSRF--IEIN 122
Query: 226 S 226
S
Sbjct: 123 S 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.128 0.370
Gapped
Lambda K H
0.267 0.0392 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,207,068
Number of extensions: 241763
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 16
Length of query: 280
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,133,061
Effective search space: 777015468
Effective search space used: 777015468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)