RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18082
         (280 letters)



>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 397

 Score = 90.6 bits (223), Expect = 2e-21
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 76  STNQDEEHCEENQLDPSVSNPVITP-----YNGDVDEGIDISHPEPPSTSATKDPSMNAK 130
             N+ E   +  + DPS S  V+TP         ++E       E        +      
Sbjct: 264 EKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGEN 323

Query: 131 GPYVYELFSIMIHSG-SASGGHYYAYIKN-FSTDEWYCFNDQSVTRITDEDIHKSYGGGP 188
              VY L  ++ H G ++  GHY A+I++    ++WY FND  V+ +  E I    GGG 
Sbjct: 324 PSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGE 383

Query: 189 ARGYY 193
           +    
Sbjct: 384 SDSAL 388


>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
           2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 336

 Score = 81.7 bits (200), Expect = 2e-18
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 123 KDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHK 182
           ++ +       VY L+++  HSG+  GGHY AY ++  T EW+ FND SVT ++   +  
Sbjct: 266 REFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT 325

Query: 183 S 183
           S
Sbjct: 326 S 326


>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
           8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 348

 Score = 82.1 bits (201), Expect = 2e-18
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 130 KGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
                Y LFS+  H G   GGHY AY KN +   W+ F+D  V+ I+   +  S
Sbjct: 285 NNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSS 338


>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
           14 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 81.3 bits (199), Expect = 3e-18
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 112 SHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQ 170
              E      +    + +     Y+L +++ H G S+S GHY +++K    DEW  F+D 
Sbjct: 295 PQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDD 353

Query: 171 SVTRITDEDIHKSYGGGPARGYY 193
            V+ +T EDI +  GGG     Y
Sbjct: 354 KVSIVTPEDILRLSGGGDWHIAY 376


>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
           HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 347

 Score = 62.4 bits (150), Expect = 9e-12
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 132 PYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGG 187
           P  Y L ++++HSG   GGHY  Y+      +W  F+D  V+R T E+  +   GG
Sbjct: 238 PANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGG 293


>d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory
           fumarate reductase) {Shewanella putrefaciens [TaxId:
           24]}
          Length = 146

 Score = 24.8 bits (53), Expect = 8.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 81  EEHCEENQLDPSVSNPVITPYNGDVDEGID 110
           EE  ++  +  +     +T YNG V  G D
Sbjct: 88  EELAKQIDVPAAELAKTVTAYNGFVKSGKD 117


>d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylobacterium
           extorquens [TaxId: 408]}
          Length = 149

 Score = 24.9 bits (53), Expect = 9.8
 Identities = 9/65 (13%), Positives = 13/65 (20%)

Query: 124 DPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
           D S    G  ++       H   A G        N+ T      +      I        
Sbjct: 27  DKSCLRNGESLFATSCSGCHGHLAEGKLGPGLNDNYWTYPSNTTDVGLFATIFGGANGMM 86

Query: 184 YGGGP 188
                
Sbjct: 87  GPHNE 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.128    0.370 

Gapped
Lambda     K      H
   0.267   0.0393    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,033,915
Number of extensions: 45946
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 10
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.7 bits)