BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18086
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 21/79 (26%)
Query: 15 AAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVK 74
A+V+ V SGKTC+LDI++QGV+ VK + ++ A ++F+
Sbjct: 84 ASVKQVSKSGKTCILDIDMQGVKSVK-------------AIPEL--------NARFLFIA 122
Query: 75 PPSIEELETRLRGRGTETE 93
PPS+E+L+ RL GRGTETE
Sbjct: 123 PPSVEDLKKRLEGRGTETE 141
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 21/79 (26%)
Query: 15 AAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVK 74
A+V+ V SGKTC+LDI++QGV+ VK + ++ A ++F+
Sbjct: 83 ASVKQVSKSGKTCILDIDMQGVKSVK-------------AIPEL--------NARFLFIA 121
Query: 75 PPSIEELETRLRGRGTETE 93
PPS+E+L+ RL GRGTETE
Sbjct: 122 PPSVEDLKKRLEGRGTETE 140
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 21/79 (26%)
Query: 15 AAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVK 74
A+V+ V SGKTC+LDI++QGV+ VK + ++ A ++F+
Sbjct: 99 ASVKQVSKSGKTCILDIDMQGVKSVK-------------AIPEL--------NARFLFIA 137
Query: 75 PPSIEELETRLRGRGTETE 93
PPS+E+L+ RL GRGTETE
Sbjct: 138 PPSVEDLKKRLEGRGTETE 156
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 22/84 (26%)
Query: 10 YMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAV 69
Y ++ AV AV + CVLD+++QGV+ +K+ +
Sbjct: 81 YGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTD----------------------LCPI 118
Query: 70 YVFVKPPSIEELETRLRGRGTETE 93
Y+FV+PPS++ LE RLR R TETE
Sbjct: 119 YIFVQPPSLDVLEQRLRLRNTETE 142
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 22/84 (26%)
Query: 10 YMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAV 69
Y +R A+E V+ +G LDI+ QG QQ+++ M A
Sbjct: 82 YGTSREAIEQVLATGVDVFLDIDWQGAQQIRQK----------------------MPHAR 119
Query: 70 YVFVKPPSIEELETRLRGRGTETE 93
+F+ PPS EL+ RLRGRG ++E
Sbjct: 120 SIFILPPSKIELDRRLRGRGQDSE 143
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 22/84 (26%)
Query: 10 YMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAV 69
Y +R A+E V+ +G LDI+ QG QQ+++ A
Sbjct: 94 YGTSREAIEQVLATGVDVFLDIDWQGAQQIRQK----------------------XPHAR 131
Query: 70 YVFVKPPSIEELETRLRGRGTETE 93
+F+ PPS EL+ RLRGRG ++E
Sbjct: 132 SIFILPPSKIELDRRLRGRGQDSE 155
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 22/77 (28%)
Query: 17 VEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPP 76
V+ ++ G L+IEV+G +QV++ A+++F+ PP
Sbjct: 90 VKDTMDEGHDVFLEIEVEGAKQVRK----------------------KFPDALFIFLAPP 127
Query: 77 SIEELETRLRGRGTETE 93
S+E L RL GRGTE++
Sbjct: 128 SLEHLRERLVGRGTESD 144
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 20/82 (24%)
Query: 10 YMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAV 69
Y ++ + + GK C+ + + GV+Q+K + G +
Sbjct: 89 YGTLKSEYDLAVGEGKICLFEXNINGVKQLKESKHIQDG--------------------I 128
Query: 70 YVFVKPPSIEELETRLRGRGTE 91
Y+FVKPPSI+ L RL+ R TE
Sbjct: 129 YIFVKPPSIDILLGRLKNRNTE 150
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 20/70 (28%)
Query: 24 GKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELET 83
K C+ ++ + GV+Q+K++ + A+Y+F+KPPS + L +
Sbjct: 114 NKICLFEMNINGVKQLKKS--------------------THIKNALYIFIKPPSTDVLLS 153
Query: 84 RLRGRGTETE 93
RL R TE +
Sbjct: 154 RLLTRNTENQ 163
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 50 VYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 92
V + G + +K+ M AV VF+ PPS ++L+ RL GRGTET
Sbjct: 119 VDLAGARAIKKT---MPEAVTVFLAPPSWQDLQARLIGRGTET 158
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 50 VYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 92
V + G + +K+ M AV VF+ PPS ++L+ RL GRGTET
Sbjct: 122 VDLAGARAIKKT---MPEAVTVFLAPPSWQDLQARLIGRGTET 161
>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
Length = 208
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 22/74 (29%)
Query: 17 VEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPP 76
VE + +G L+IEVQG QV++A +++F+ PP
Sbjct: 92 VEEKLAAGVDIFLEIEVQGAXQVRKA----------------------XPEGIFIFLTPP 129
Query: 77 SIEELETRLRGRGT 90
+ EL+ R+ GRGT
Sbjct: 130 DLSELKNRIIGRGT 143
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 50 VYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 92
V + G + +K+ M AV VF+ PPS ++L+ RL GRG ET
Sbjct: 122 VDLAGARAIKKT---MPEAVTVFLAPPSWQDLQARLIGRGCET 161
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 22/84 (26%)
Query: 5 IYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGA 64
IY + Y + V + +G+ +L+I+ QG +Q++
Sbjct: 78 IYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIREL---------------------- 115
Query: 65 MAGAVYVFVKPPSIEELETRLRGR 88
A+ +F+ PPSIE L RL R
Sbjct: 116 FPPALSIFILPPSIEALRERLIKR 139
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 69 VYVFVKPPSIEELETRLRGR 88
V +F+ PPS+EEL RL GR
Sbjct: 142 VSIFIMPPSMEELRRRLCGR 161
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 29 LDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEEL 81
LDI + V Q+ R G Y FG Q V F+K P +++L
Sbjct: 250 LDILTEKVNQIARGAAIQTGCDYEFGPIQ---------NGVNEFIKTPKLDDL 293
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 22/72 (30%)
Query: 10 YMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAV 69
Y + A+V V GK C+LD+ +G A +KR A V
Sbjct: 175 YGTSVASVREVAEKGKHCILDV----------SGNA------------IKRLQVAQLYPV 212
Query: 70 YVFVKPPSIEEL 81
VF+KP S++ +
Sbjct: 213 AVFIKPKSVDSV 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,934,923
Number of Sequences: 62578
Number of extensions: 126280
Number of successful extensions: 323
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 23
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)