Query psy18086
Match_columns 166
No_of_seqs 112 out of 1037
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 22:14:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0194 Gmk Guanylate kinase [ 100.0 4E-31 8.6E-36 217.0 14.4 117 3-149 72-188 (191)
2 PRK14737 gmk guanylate kinase; 100.0 2.6E-27 5.7E-32 191.0 14.3 112 3-143 73-184 (186)
3 smart00072 GuKc Guanylate kina 99.9 1.2E-25 2.5E-30 178.6 14.6 112 3-144 72-183 (184)
4 PLN02772 guanylate kinase 99.9 1.9E-25 4.2E-30 200.1 14.6 116 3-145 205-320 (398)
5 PF00625 Guanylate_kin: Guanyl 99.9 1E-24 2.3E-29 172.5 12.5 112 3-144 72-183 (183)
6 KOG0707|consensus 99.9 3.6E-23 7.8E-28 174.2 7.7 120 3-149 107-227 (231)
7 PRK14738 gmk guanylate kinase; 99.9 2E-20 4.4E-25 151.9 15.5 115 3-146 82-197 (206)
8 KOG0609|consensus 99.9 3.2E-21 7E-26 177.2 11.8 114 4-147 411-532 (542)
9 TIGR03263 guanyl_kin guanylate 99.8 2.6E-19 5.6E-24 139.4 14.4 110 3-142 70-179 (180)
10 PRK00300 gmk guanylate kinase; 99.8 3.8E-18 8.2E-23 135.6 14.1 112 3-144 74-185 (205)
11 PRK10078 ribose 1,5-bisphospho 99.6 4E-14 8.6E-19 112.5 11.2 109 3-145 69-178 (186)
12 COG3709 Uncharacterized compon 99.5 1.8E-13 3.9E-18 111.9 11.1 113 1-146 72-185 (192)
13 cd00071 GMPK Guanosine monopho 99.4 1.3E-12 2.7E-17 100.4 9.0 68 3-137 69-136 (137)
14 KOG0708|consensus 99.4 4E-12 8.6E-17 113.2 11.2 117 4-159 241-358 (359)
15 TIGR02322 phosphon_PhnN phosph 99.3 6.8E-11 1.5E-15 92.3 13.2 108 3-143 70-178 (179)
16 PRK08356 hypothetical protein; 98.8 4E-09 8.8E-14 84.5 5.3 110 6-144 74-193 (195)
17 PRK04040 adenylate kinase; Pro 98.8 3.1E-08 6.8E-13 80.1 9.3 69 67-141 112-187 (188)
18 PRK14731 coaE dephospho-CoA ki 98.3 8.1E-07 1.8E-11 72.4 5.7 68 69-144 136-203 (208)
19 cd00227 CPT Chloramphenicol (C 98.3 4.5E-06 9.7E-11 65.6 8.1 107 6-141 67-174 (175)
20 PRK00081 coaE dephospho-CoA ki 98.1 2E-05 4.4E-10 63.5 9.1 67 69-143 127-193 (194)
21 TIGR00152 dephospho-CoA kinase 97.9 4.5E-05 9.7E-10 60.5 7.7 62 69-138 126-187 (188)
22 PRK14732 coaE dephospho-CoA ki 97.8 0.00014 3.1E-09 59.3 8.2 68 69-144 124-191 (196)
23 PTZ00451 dephospho-CoA kinase; 97.7 0.00013 2.8E-09 62.0 7.0 68 69-144 139-208 (244)
24 PRK14730 coaE dephospho-CoA ki 97.6 0.00052 1.1E-08 55.7 9.1 66 69-142 128-193 (195)
25 PRK01184 hypothetical protein; 97.6 0.0012 2.6E-08 51.7 10.7 73 67-145 104-180 (184)
26 PLN02422 dephospho-CoA kinase 97.5 0.0015 3.3E-08 55.2 11.4 68 69-144 128-195 (232)
27 PRK00698 tmk thymidylate kinas 97.5 0.002 4.2E-08 50.7 10.5 112 7-144 71-203 (205)
28 PRK14734 coaE dephospho-CoA ki 97.2 0.001 2.2E-08 54.2 6.7 68 69-144 128-195 (200)
29 cd02022 DPCK Dephospho-coenzym 97.0 0.0033 7.1E-08 49.8 7.3 54 69-127 124-177 (179)
30 PRK14733 coaE dephospho-CoA ki 96.9 0.0026 5.7E-08 52.7 6.4 68 69-144 131-199 (204)
31 COG0237 CoaE Dephospho-CoA kin 96.4 0.038 8.2E-07 45.8 9.8 127 8-146 9-195 (201)
32 PRK03333 coaE dephospho-CoA ki 96.1 0.038 8.2E-07 49.7 8.9 69 69-145 126-194 (395)
33 KOG3580|consensus 95.9 0.047 1E-06 53.0 9.1 106 14-157 677-786 (1027)
34 PRK12339 2-phosphoglycerate ki 95.8 0.06 1.3E-06 44.1 8.3 97 17-142 90-196 (197)
35 PRK06762 hypothetical protein; 95.7 0.41 9E-06 36.6 12.3 49 67-124 96-147 (166)
36 PRK04182 cytidylate kinase; Pr 95.7 0.11 2.3E-06 39.8 8.7 71 68-143 93-173 (180)
37 PRK14530 adenylate kinase; Pro 95.6 0.078 1.7E-06 42.9 8.2 70 68-143 135-213 (215)
38 TIGR01360 aden_kin_iso1 adenyl 95.6 0.17 3.7E-06 39.0 9.7 67 69-142 109-186 (188)
39 PRK13946 shikimate kinase; Pro 95.6 0.42 9E-06 37.9 12.0 71 67-147 103-180 (184)
40 cd01672 TMPK Thymidine monopho 95.4 0.35 7.6E-06 37.1 10.8 66 69-142 128-199 (200)
41 TIGR01313 therm_gnt_kin carboh 95.1 0.63 1.4E-05 35.5 11.4 66 67-142 94-162 (163)
42 TIGR02173 cyt_kin_arch cytidyl 94.9 0.27 5.9E-06 37.3 8.8 67 69-140 94-169 (171)
43 PF01121 CoaE: Dephospho-CoA k 94.9 0.014 3.1E-07 47.2 1.7 54 69-127 125-178 (180)
44 PRK14531 adenylate kinase; Pro 94.8 0.16 3.4E-06 40.2 7.4 67 69-141 110-182 (183)
45 TIGR00041 DTMP_kinase thymidyl 94.7 0.42 9.1E-06 37.4 9.7 22 69-91 130-151 (195)
46 KOG3812|consensus 94.5 0.086 1.9E-06 48.2 5.8 72 67-145 284-355 (475)
47 PRK05480 uridine/cytidine kina 94.4 0.17 3.6E-06 40.5 6.8 70 69-142 128-203 (209)
48 KOG3220|consensus 94.4 0.38 8.3E-06 41.1 9.1 95 18-145 101-196 (225)
49 COG2019 AdkA Archaeal adenylat 93.6 0.63 1.4E-05 38.8 8.8 73 67-143 109-188 (189)
50 PF07931 CPT: Chloramphenicol 93.5 0.62 1.3E-05 37.8 8.5 100 10-141 69-173 (174)
51 PRK08154 anaerobic benzoate ca 93.4 0.56 1.2E-05 40.6 8.6 67 67-144 227-302 (309)
52 TIGR03574 selen_PSTK L-seryl-t 93.4 1.9 4.1E-05 35.6 11.4 107 15-142 59-168 (249)
53 TIGR01359 UMP_CMP_kin_fam UMP- 92.7 0.97 2.1E-05 34.9 8.3 67 69-141 106-182 (183)
54 PRK13975 thymidylate kinase; P 92.6 4 8.7E-05 31.8 12.2 69 69-143 116-190 (196)
55 PRK00131 aroK shikimate kinase 92.5 3.5 7.6E-05 31.0 12.2 66 67-142 97-170 (175)
56 PRK05541 adenylylsulfate kinas 91.6 0.47 1E-05 36.9 5.3 66 68-141 103-170 (176)
57 PRK08233 hypothetical protein; 90.4 3.1 6.6E-05 31.8 8.8 72 69-144 100-178 (182)
58 PRK02496 adk adenylate kinase; 90.2 2.2 4.8E-05 33.3 8.1 67 69-141 110-182 (184)
59 PF13671 AAA_33: AAA domain; P 89.9 1.8 3.8E-05 31.8 6.9 60 14-92 60-122 (143)
60 PLN02200 adenylate kinase fami 89.7 3 6.4E-05 34.9 8.9 75 69-149 148-230 (234)
61 PRK06696 uridine kinase; Valid 89.7 1.5 3.2E-05 35.8 6.9 58 68-127 148-212 (223)
62 PRK05416 glmZ(sRNA)-inactivati 89.7 2.3 5.1E-05 37.0 8.5 66 67-141 86-158 (288)
63 PRK09270 nucleoside triphospha 88.9 1.2 2.6E-05 36.4 5.9 54 69-127 163-224 (229)
64 PHA02530 pseT polynucleotide k 88.9 4.5 9.8E-05 33.8 9.5 66 16-103 67-140 (300)
65 PRK14532 adenylate kinase; Pro 87.7 8.2 0.00018 30.1 9.7 66 69-142 109-186 (188)
66 PRK03731 aroL shikimate kinase 87.3 5.2 0.00011 30.6 8.2 66 68-143 95-170 (171)
67 PRK14526 adenylate kinase; Pro 87.3 6 0.00013 32.6 9.1 69 68-143 103-209 (211)
68 PRK14527 adenylate kinase; Pro 87.3 5.7 0.00012 31.4 8.6 66 69-141 114-190 (191)
69 PRK13808 adenylate kinase; Pro 87.2 4.8 0.0001 36.0 9.0 70 69-145 109-195 (333)
70 PF13189 Cytidylate_kin2: Cyti 87.0 1.5 3.2E-05 34.9 5.1 56 67-124 114-178 (179)
71 PRK12337 2-phosphoglycerate ki 86.7 7.8 0.00017 36.5 10.4 103 16-148 351-466 (475)
72 TIGR00235 udk uridine kinase. 86.3 5.6 0.00012 31.9 8.2 71 69-143 128-204 (207)
73 COG2074 2-phosphoglycerate kin 86.1 3.7 7.9E-05 36.5 7.5 68 67-145 209-289 (299)
74 PF01202 SKI: Shikimate kinase 85.5 7 0.00015 30.1 8.1 65 68-141 86-157 (158)
75 PRK07667 uridine kinase; Provi 85.2 5.8 0.00013 31.7 7.8 53 68-121 140-192 (193)
76 TIGR01351 adk adenylate kinase 85.2 13 0.00028 29.8 9.9 66 69-141 106-209 (210)
77 PRK00279 adk adenylate kinase; 84.5 5.1 0.00011 32.3 7.2 68 69-143 109-214 (215)
78 PRK13947 shikimate kinase; Pro 84.2 16 0.00035 27.7 9.8 63 69-139 96-163 (171)
79 cd02030 NDUO42 NADH:Ubiquinone 83.6 9.7 0.00021 31.0 8.6 65 69-142 145-216 (219)
80 PRK14528 adenylate kinase; Pro 82.3 9.1 0.0002 30.4 7.8 37 69-106 110-152 (186)
81 PRK13973 thymidylate kinase; P 82.0 26 0.00056 28.4 12.5 115 16-144 81-207 (213)
82 KOG3079|consensus 81.9 7.7 0.00017 32.7 7.4 121 15-143 56-193 (195)
83 COG0703 AroK Shikimate kinase 81.8 16 0.00034 30.0 9.1 68 67-144 95-169 (172)
84 cd02023 UMPK Uridine monophosp 81.6 10 0.00022 29.9 7.7 64 69-136 121-190 (198)
85 COG1936 Predicted nucleotide k 81.5 6.8 0.00015 32.6 6.8 67 71-143 86-156 (180)
86 COG1618 Predicted nucleotide k 80.3 4.4 9.6E-05 33.6 5.3 47 14-84 120-170 (179)
87 TIGR01223 Pmev_kin_anim phosph 79.9 6.8 0.00015 32.6 6.3 64 67-144 115-178 (182)
88 PF02223 Thymidylate_kin: Thym 79.6 27 0.00058 27.1 11.0 70 15-90 71-141 (186)
89 PRK03839 putative kinase; Prov 79.0 18 0.0004 28.0 8.3 68 69-144 82-154 (180)
90 PRK00889 adenylylsulfate kinas 78.8 5 0.00011 31.0 5.1 67 67-143 100-170 (175)
91 cd01428 ADK Adenylate kinase ( 77.9 19 0.00042 27.7 8.1 37 68-105 106-167 (194)
92 PRK05057 aroK shikimate kinase 77.7 32 0.00069 27.0 12.0 65 68-141 98-169 (172)
93 cd02020 CMPK Cytidine monophos 77.7 16 0.00035 26.6 7.3 36 68-104 84-124 (147)
94 cd00464 SK Shikimate kinase (S 77.5 26 0.00056 25.8 10.6 53 67-127 92-150 (154)
95 PRK13976 thymidylate kinase; P 77.3 39 0.00084 27.7 12.2 116 17-145 79-203 (209)
96 PRK00091 miaA tRNA delta(2)-is 74.6 5.1 0.00011 35.2 4.5 62 14-102 83-145 (307)
97 PRK12338 hypothetical protein; 74.2 13 0.00029 33.1 7.0 62 73-145 135-206 (319)
98 PRK14021 bifunctional shikimat 73.5 53 0.0011 30.9 11.2 67 67-143 103-176 (542)
99 PLN02842 nucleotide kinase 72.9 39 0.00086 32.1 10.1 60 79-145 141-204 (505)
100 PRK07933 thymidylate kinase; V 69.7 29 0.00064 28.3 7.7 66 69-141 135-211 (213)
101 PLN02674 adenylate kinase 69.5 26 0.00057 29.9 7.6 66 69-141 140-243 (244)
102 COG1428 Deoxynucleoside kinase 69.4 46 0.00099 28.5 8.8 72 69-145 129-210 (216)
103 PLN02459 probable adenylate ki 68.8 26 0.00056 30.4 7.4 48 90-143 199-251 (261)
104 PRK03846 adenylylsulfate kinas 68.8 21 0.00046 28.4 6.5 94 19-142 91-191 (198)
105 PRK00625 shikimate kinase; Pro 68.7 47 0.001 26.5 8.5 23 67-90 96-118 (173)
106 PRK13948 shikimate kinase; Pro 67.9 63 0.0014 26.1 12.5 64 69-143 105-175 (182)
107 PRK13949 shikimate kinase; Pro 67.3 59 0.0013 25.5 11.4 18 69-87 96-113 (169)
108 PF01712 dNK: Deoxynucleoside 67.3 3 6.4E-05 32.2 1.2 24 69-93 70-93 (146)
109 TIGR00455 apsK adenylylsulfate 66.8 33 0.00072 26.7 7.1 48 18-84 84-132 (184)
110 PRK00023 cmk cytidylate kinase 64.9 43 0.00093 27.7 7.8 76 67-143 140-221 (225)
111 PF13238 AAA_18: AAA domain; P 64.3 15 0.00033 25.9 4.4 23 71-94 96-118 (129)
112 TIGR01663 PNK-3'Pase polynucle 61.4 56 0.0012 31.1 8.7 54 15-90 411-470 (526)
113 cd01673 dNK Deoxyribonucleosid 60.7 39 0.00084 26.3 6.5 21 69-90 127-147 (193)
114 PF08433 KTI12: Chromatin asso 60.6 1.1E+02 0.0024 26.3 9.7 108 11-142 58-170 (270)
115 PRK05537 bifunctional sulfate 60.6 51 0.0011 31.4 8.4 66 68-142 493-561 (568)
116 PF04472 DUF552: Protein of un 58.6 8.8 0.00019 26.5 2.2 44 15-58 13-56 (73)
117 PRK15427 colanic acid biosynth 55.8 71 0.0015 28.3 8.0 55 72-143 351-405 (406)
118 COG0125 Tmk Thymidylate kinase 53.2 1.3E+02 0.0029 25.0 12.1 114 16-143 80-203 (208)
119 COG0563 Adk Adenylate kinase a 52.4 81 0.0018 25.3 7.2 67 67-140 107-176 (178)
120 PRK13974 thymidylate kinase; P 51.2 1.2E+02 0.0026 24.4 8.1 65 69-143 137-206 (212)
121 cd02026 PRK Phosphoribulokinas 51.1 42 0.0009 28.8 5.6 56 68-124 117-177 (273)
122 PRK11545 gntK gluconate kinase 51.0 94 0.002 24.1 7.2 23 67-90 91-113 (163)
123 cd02021 GntK Gluconate kinase 50.3 1E+02 0.0022 22.8 8.7 51 22-90 70-120 (150)
124 PRK04220 2-phosphoglycerate ki 48.8 1.4E+02 0.0031 26.4 8.7 101 15-145 181-292 (301)
125 PLN02924 thymidylate kinase 48.6 1.6E+02 0.0034 24.4 12.0 113 15-146 91-206 (220)
126 PF00406 ADK: Adenylate kinase 48.3 52 0.0011 24.7 5.2 34 69-106 105-138 (151)
127 COG1799 Uncharacterized protei 45.6 28 0.0006 28.6 3.5 55 16-77 89-143 (167)
128 PTZ00301 uridine kinase; Provi 44.4 1.5E+02 0.0033 24.4 7.8 70 69-143 129-205 (210)
129 COG0645 Predicted kinase [Gene 44.1 1.8E+02 0.0039 23.9 8.0 64 18-97 70-134 (170)
130 KOG3327|consensus 43.2 2.1E+02 0.0046 24.4 9.1 114 14-145 79-197 (208)
131 PRK05506 bifunctional sulfate 42.8 1.3E+02 0.0029 28.6 8.1 66 68-143 559-628 (632)
132 PF11341 DUF3143: Protein of u 42.4 19 0.00042 25.1 1.8 17 8-24 47-63 (63)
133 PRK14529 adenylate kinase; Pro 41.6 1.6E+02 0.0034 24.7 7.6 66 69-141 108-222 (223)
134 PRK09087 hypothetical protein; 38.8 63 0.0014 26.7 4.7 17 68-84 145-161 (226)
135 PRK06217 hypothetical protein; 38.1 1.8E+02 0.004 22.6 7.1 20 69-89 86-105 (183)
136 PRK07429 phosphoribulokinase; 37.3 80 0.0017 28.0 5.4 54 69-124 127-186 (327)
137 TIGR03575 selen_PSTK_euk L-ser 36.2 2.3E+02 0.0049 25.5 8.1 35 66-101 154-189 (340)
138 PF08312 cwf21: cwf21 domain; 36.0 52 0.0011 21.4 3.0 27 80-107 15-41 (46)
139 PRK07764 DNA polymerase III su 34.3 1.7E+02 0.0037 29.4 7.6 71 13-102 101-190 (824)
140 PF02254 TrkA_N: TrkA-N domain 34.1 1.5E+02 0.0032 20.8 5.5 45 15-83 12-57 (116)
141 PF03668 ATP_bind_2: P-loop AT 33.8 1.5E+02 0.0032 26.3 6.4 67 67-147 82-156 (284)
142 KOG3347|consensus 33.7 53 0.0012 27.2 3.4 29 70-100 96-124 (176)
143 KOG0025|consensus 33.7 87 0.0019 28.5 5.0 33 67-99 187-222 (354)
144 COG1935 Uncharacterized conser 33.2 84 0.0018 24.7 4.2 51 9-82 6-56 (122)
145 PRK13695 putative NTPase; Prov 33.2 1.6E+02 0.0036 22.5 6.0 8 23-30 96-103 (174)
146 PHA00729 NTP-binding motif con 33.0 55 0.0012 27.8 3.5 24 67-90 118-141 (226)
147 PRK09518 bifunctional cytidyla 33.0 1.7E+02 0.0037 28.4 7.3 80 68-151 156-239 (712)
148 PHA02575 1 deoxynucleoside mon 32.7 49 0.0011 28.4 3.2 23 116-141 203-225 (227)
149 CHL00072 chlL photochlorophyll 32.0 51 0.0011 28.3 3.2 35 1-36 1-41 (290)
150 PLN02318 phosphoribulokinase/u 31.4 1.5E+02 0.0033 29.3 6.6 56 68-124 178-239 (656)
151 KOG3354|consensus 31.0 3.2E+02 0.007 22.9 9.3 22 67-89 118-139 (191)
152 PF00485 PRK: Phosphoribulokin 30.3 83 0.0018 24.8 4.0 55 69-124 129-188 (194)
153 TIGR02563 cas_Csy4 CRISPR-asso 28.0 74 0.0016 26.2 3.4 33 70-103 100-132 (185)
154 PHA02757 hypothetical protein; 27.9 60 0.0013 23.2 2.4 25 10-34 31-55 (75)
155 COG1859 KptA RNA:NAD 2'-phosph 27.3 1.2E+02 0.0027 25.8 4.7 35 8-42 123-163 (211)
156 PRK14530 adenylate kinase; Pro 27.1 2E+02 0.0043 23.0 5.7 21 69-90 108-128 (215)
157 cd05844 GT1_like_7 Glycosyltra 26.5 2.4E+02 0.0051 23.3 6.2 18 71-88 316-333 (367)
158 PLN02199 shikimate kinase 26.4 4.7E+02 0.01 23.4 8.7 78 3-87 105-214 (303)
159 PHA01630 putative group 1 glyc 26.3 2.9E+02 0.0062 24.1 6.9 54 73-143 276-330 (331)
160 COG4639 Predicted kinase [Gene 25.6 3.9E+02 0.0084 22.1 10.3 83 15-124 60-149 (168)
161 PRK06547 hypothetical protein; 25.0 3.3E+02 0.0071 21.5 6.6 35 68-104 119-153 (172)
162 PRK11860 bifunctional 3-phosph 24.7 4.5E+02 0.0098 25.3 8.5 74 67-142 574-654 (661)
163 COG0742 N6-adenine-specific me 23.7 2E+02 0.0044 23.8 5.2 65 11-76 53-123 (187)
164 PF10437 Lip_prot_lig_C: Bacte 23.4 1.1E+02 0.0024 21.2 3.2 31 72-103 38-68 (86)
165 PRK09825 idnK D-gluconate kina 23.3 3.7E+02 0.0081 21.1 9.7 22 67-89 99-120 (176)
166 TIGR00620 sporelyase spore pho 23.1 2E+02 0.0043 24.2 5.1 72 77-156 55-126 (199)
167 PF00836 Stathmin: Stathmin fa 23.1 9 0.00019 30.6 -2.8 47 56-105 7-56 (140)
168 PF12221 HflK_N: Bacterial mem 22.3 52 0.0011 21.1 1.2 14 75-88 20-33 (42)
169 PTZ00088 adenylate kinase 1; P 22.3 4.6E+02 0.01 21.8 7.7 23 84-106 169-191 (229)
170 PF12909 DUF3832: Protein of u 22.2 1.1E+02 0.0024 22.5 3.0 46 116-165 25-80 (89)
171 PRK00886 2-phosphosulfolactate 22.1 1.3E+02 0.0029 25.6 4.0 37 5-42 77-113 (240)
172 PRK13477 bifunctional pantoate 22.0 6.1E+02 0.013 24.2 8.6 72 68-143 422-503 (512)
173 PRK14100 2-phosphosulfolactate 21.9 1.2E+02 0.0026 26.0 3.6 38 4-42 69-106 (237)
174 cd02024 NRK1 Nicotinamide ribo 21.9 85 0.0018 25.5 2.6 20 69-89 133-152 (187)
175 PF06414 Zeta_toxin: Zeta toxi 21.4 2.1E+02 0.0045 22.6 4.8 19 15-33 84-102 (199)
176 PF01053 Cys_Met_Meta_PP: Cys/ 21.3 1.3E+02 0.0029 27.1 4.0 55 2-77 96-150 (386)
177 smart00485 XPGN Xeroderma pigm 21.2 1.2E+02 0.0025 21.5 3.0 22 67-88 72-96 (99)
178 cd02025 PanK Pantothenate kina 21.1 3.7E+02 0.008 22.0 6.3 17 69-86 131-147 (220)
179 PLN02348 phosphoribulokinase 21.0 2E+02 0.0044 26.6 5.1 34 68-102 184-221 (395)
180 PF04029 2-ph_phosp: 2-phospho 20.6 1.3E+02 0.0029 25.4 3.6 38 4-42 70-107 (233)
181 PRK13951 bifunctional shikimat 20.5 6.5E+02 0.014 23.5 8.5 21 70-91 95-115 (488)
182 COG1105 FruK Fructose-1-phosph 20.2 3.3E+02 0.007 24.4 6.1 43 18-87 153-195 (310)
183 PF14561 TPR_20: Tetratricopep 20.0 1.1E+02 0.0024 21.9 2.6 47 76-144 6-52 (90)
No 1
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.97 E-value=4e-31 Score=216.98 Aligned_cols=117 Identities=36% Similarity=0.526 Sum_probs=111.8
Q ss_pred EEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
++|+||+||||+..|+..+++|+.|+||||+||++++|+. || ++++|||.|||+++|+
T Consensus 72 a~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~---~p-------------------~~v~IFi~pPs~eeL~ 129 (191)
T COG0194 72 AEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKK---MP-------------------NAVSIFILPPSLEELE 129 (191)
T ss_pred EEEcCCcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHh---CC-------------------CeEEEEEcCCCHHHHH
Confidence 6899999999999999999999999999999999999999 88 8999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhhhhhhh
Q psy18086 83 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKSSEIQS 149 (166)
Q Consensus 83 ~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~~~~~~ 149 (166)
+||++||++|++.|++||..|+.||++.. .|||+|+|| |+ +.|+++|+.|+.++..+..
T Consensus 130 ~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~----~fdyvivNd-d~---e~a~~~l~~ii~aer~~~~ 188 (191)
T COG0194 130 RRLKGRGTDSEEVIARRLENAKKEISHAD----EFDYVIVND-DL---EKALEELKSIILAERLRRD 188 (191)
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHHHH----hCCEEEECc-cH---HHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988 899999999 99 9999999999998865443
No 2
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.95 E-value=2.6e-27 Score=191.00 Aligned_cols=112 Identities=26% Similarity=0.379 Sum_probs=104.5
Q ss_pred EEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
++|+||+||||+++|++++++|++||||+|++|++++|+. +|. .+++|||.|||.++++
T Consensus 73 ~~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~---~~~------------------~~~~Ifi~pps~e~l~ 131 (186)
T PRK14737 73 AEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEK---FPE------------------RIVTIFIEPPSEEEWE 131 (186)
T ss_pred EEECCeeecCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHh---CCC------------------CeEEEEEECCCHHHHH
Confidence 6899999999999999999999999999999999999998 761 3489999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHh
Q psy18086 83 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 83 ~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~ 143 (166)
+||++|+++++++|+.||..+..++.+.+ .||++|+|+ ++ +.|+++|++++..
T Consensus 132 ~RL~~R~~~s~e~i~~Rl~~~~~e~~~~~----~~D~vI~N~-dl---e~a~~ql~~ii~~ 184 (186)
T PRK14737 132 ERLIHRGTDSEESIEKRIENGIIELDEAN----EFDYKIIND-DL---EDAIADLEAIICG 184 (186)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhc----cCCEEEECc-CH---HHHHHHHHHHHhc
Confidence 99999999999999999999988888777 899999999 99 9999999999864
No 3
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.94 E-value=1.2e-25 Score=178.61 Aligned_cols=112 Identities=32% Similarity=0.468 Sum_probs=104.5
Q ss_pred EEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
++++||+|||++++|++++++|++||||++++|+.++++. ++ .|++|||.|||.++|+
T Consensus 72 ~~~~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~---~~-------------------~~~vIfi~~~s~~~l~ 129 (184)
T smart00072 72 GEYSGNYYGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKA---QL-------------------YPIVIFIAPPSSEELE 129 (184)
T ss_pred EEEcCcCcccCHHHHHHHHHcCCeEEEEECHHHHHHHHHh---CC-------------------CcEEEEEeCcCHHHHH
Confidence 6789999999999999999999999999999999999998 44 7999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhh
Q psy18086 83 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 83 ~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~ 144 (166)
+||++|+++++++|++||..|+.++...+ .||++|+|+ ++ +.|+++|+++|.+.
T Consensus 130 ~rl~~R~~~~~~~i~~rl~~a~~~~~~~~----~fd~~I~n~-~l---~~~~~~l~~~i~~~ 183 (184)
T smart00072 130 RRLRGRGTETAERIQKRLAAAQKEAQEYH----LFDYVIVND-DL---EDAYEELKEILEAE 183 (184)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhc----cCCEEEECc-CH---HHHHHHHHHHHHhc
Confidence 99999999999999999999988876545 899999999 99 99999999999764
No 4
>PLN02772 guanylate kinase
Probab=99.93 E-value=1.9e-25 Score=200.10 Aligned_cols=116 Identities=36% Similarity=0.524 Sum_probs=106.8
Q ss_pred EEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
++|+||+||||+++|+.++++|++||||+|++|++++++. +. .+++|||.|||+++|+
T Consensus 205 ~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~---~l-------------------~~v~IFI~PPSlEeLe 262 (398)
T PLN02772 205 ASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRAS---SL-------------------EAIFIFICPPSMEELE 262 (398)
T ss_pred eeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHh---cC-------------------CeEEEEEeCCCHHHHH
Confidence 6899999999999999999999999999999999999988 32 7899999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhhh
Q psy18086 83 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKSS 145 (166)
Q Consensus 83 ~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~~ 145 (166)
+||+.|+++++++|++||+.|+.||.....++ .||++|+|| ++ ++|+++|++++....
T Consensus 263 ~RL~~RGteseE~I~kRL~~A~~Ei~~~~~~~-~fD~vIvND-dL---e~A~~~L~~iL~~~~ 320 (398)
T PLN02772 263 KRLRARGTETEEQIQKRLRNAEAELEQGKSSG-IFDHILYND-NL---EECYKNLKKLLGLDG 320 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhccccC-CCCEEEECC-CH---HHHHHHHHHHHhhcC
Confidence 99999999999999999999988887644333 899999999 99 999999999997664
No 5
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.92 E-value=1e-24 Score=172.45 Aligned_cols=112 Identities=29% Similarity=0.497 Sum_probs=104.8
Q ss_pred EEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
++|+|++|||++++|++++++|++||||+|++|+.+|++. ++ .|++|||.|||.++|+
T Consensus 72 ~~~~g~~YGt~~~~i~~~~~~gk~~il~~~~~g~~~L~~~-~~---------------------~~~~IfI~~~s~~~l~ 129 (183)
T PF00625_consen 72 GEYDGNYYGTSKSAIDKVLEEGKHCILDVDPEGVKQLKKA-GF---------------------NPIVIFIKPPSPEVLK 129 (183)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTTEEEEEETHHHHHHHHHC-TT---------------------TEEEEEEEESSHHHHH
T ss_pred eeecchhhhhccchhhHhhhcCCcEEEEccHHHHHHHHhc-cc---------------------CceEEEEEccchHHHH
Confidence 5689999999999999999999999999999999999998 55 8999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhh
Q psy18086 83 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 83 ~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~ 144 (166)
+||+.|++++++++.+|+..++.++++.. .||++|+|+ ++ +.|+++|.++|.++
T Consensus 130 ~~l~~r~~~~~~~i~~r~~~~~~~~~~~~----~fd~vi~n~-~l---e~~~~~l~~ii~~~ 183 (183)
T PF00625_consen 130 RRLRRRGDESEEEIEERLERAEKEFEHYN----EFDYVIVND-DL---EEAVKELKEIIEQE 183 (183)
T ss_dssp HHHHTTTHCHHHHHHHHHHHHHHHHGGGG----GSSEEEECS-SH---HHHHHHHHHHHHHH
T ss_pred HHHhccccccHHHHHHHHHHHHHHHhHhh----cCCEEEECc-CH---HHHHHHHHHHHHhC
Confidence 99999998899999999999988887755 599999999 99 99999999999864
No 6
>KOG0707|consensus
Probab=99.88 E-value=3.6e-23 Score=174.24 Aligned_cols=120 Identities=38% Similarity=0.542 Sum_probs=112.1
Q ss_pred EEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
|.++||+|||++++++++..+|++|++|||.+|++.+|.. ++ ++++||+.|||...++
T Consensus 107 a~~~gn~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~-~~---------------------~~i~i~~~pps~~~~e 164 (231)
T KOG0707|consen 107 ATFSGNKYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRAT-SL---------------------DAIYIFIKPPSIKILE 164 (231)
T ss_pred hhhhcccCCchHHHHHHHHhcCCcceeehhhcCceeeecC-CC---------------------ceEEEEecCCcchhHH
Confidence 5689999999999999999999999999999999999988 66 8999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEc-CCCCCCHhHHHHHHHHHHHhhhhhhh
Q psy18086 83 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISEL-AFFLEYNSAAGEIFEHFGLKSSEIQS 149 (166)
Q Consensus 83 ~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvN-d~dl~~~e~a~~~l~~ii~~~~~~~~ 149 (166)
+||++||||++++|.+|+..|+.++.+..+++ .||++|+| + ++ ++|+++|+.++........
T Consensus 165 ~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~g-~~d~~~~ns~-~l---ee~~kel~~~~~~~~~~~~ 227 (231)
T KOG0707|consen 165 ERLRARGTETEESLLKRLKSAEEEFEILENSG-SFDLVIVNSD-RL---EEAYKELEIFISSDDKESH 227 (231)
T ss_pred HHhhccCcchHHHHHHHHHhhhhhhccccCCc-cccceecCCC-ch---hhhhhhhhhhhhHHHHhhh
Confidence 99999999999999999998888999999899 99999999 6 99 9999999999987765443
No 7
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.85 E-value=2e-20 Score=151.88 Aligned_cols=115 Identities=28% Similarity=0.412 Sum_probs=103.7
Q ss_pred EEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
++++||+|||++++|++++++|++||++++.+|+..+++. +| ++++||+.|||.++|.
T Consensus 82 ~~~~g~~YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~---~p-------------------d~~~if~~pps~e~l~ 139 (206)
T PRK14738 82 AEVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRL---VP-------------------EAVFIFLAPPSMDELT 139 (206)
T ss_pred EEEcCceecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHh---CC-------------------CeEEEEEeCCCHHHHH
Confidence 6899999999999999999999999999999999999988 66 7899999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcC-CCCCCHhHHHHHHHHHHHhhhh
Q psy18086 83 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELA-FFLEYNSAAGEIFEHFGLKSSE 146 (166)
Q Consensus 83 ~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ii~~~~~ 146 (166)
+||.+|+.++++++.+|+..+..++.... .||++++|. .++ +++++++.+++..+..
T Consensus 140 ~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~~----~~~~~iId~~~~~---e~v~~~i~~~l~~~~~ 197 (206)
T PRK14738 140 RRLELRRTESPEELERRLATAPLELEQLP----EFDYVVVNPEDRL---DEAVAQIMAIISAEKS 197 (206)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhccc----CCCEEEECCCCCH---HHHHHHHHHHHHHHhc
Confidence 99999998899999999999987776544 679998884 379 9999999999987643
No 8
>KOG0609|consensus
Probab=99.85 E-value=3.2e-21 Score=177.19 Aligned_cols=114 Identities=26% Similarity=0.317 Sum_probs=102.2
Q ss_pred EEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHH
Q psy18086 4 IIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELET 83 (166)
Q Consensus 4 ~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~ 83 (166)
+|.||+|||+.++|++++++||+||||+.+|.++.+|.+ +| .|++|||+|||++.|++
T Consensus 411 Ey~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~-Ef---------------------~PyVIFI~pP~~~~~r~ 468 (542)
T KOG0609|consen 411 EYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTA-EF---------------------KPYVIFIAPPSLEELRA 468 (542)
T ss_pred cchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhh-cc---------------------cceEEEecCCCchhHHH
Confidence 578999999999999999999999999999999999999 87 79999999999999976
Q ss_pred HhhcCC-------CCCHHHHHHHHHHHHH-HhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhhhhh
Q psy18086 84 RLRGRG-------TETEDSLRRRLDLARR-DMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKSSEI 147 (166)
Q Consensus 84 RL~~Rg-------tetee~I~~Rl~~A~~-e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~~~~ 147 (166)
-.+.-. ..+++++++.++.++. +.+|++ +||.+|+|+ |+ +.|+++|+.++++....
T Consensus 469 ~r~~~~~~~~~~~~~~d~~Lq~i~~eS~~ie~~ygh----yfD~iIvN~-dl---d~t~~eL~~~iekl~te 532 (542)
T KOG0609|consen 469 LRKVAVMSTIVAKQFTDEDLQEIIDESARIEQQYGH----YFDLIIVNS-DL---DKTFRELKTAIEKLRTE 532 (542)
T ss_pred HhhhccccccccccCCHHHHHHHHHHHHHHHHHhhh----heeEEEEcC-cH---HHHHHHHHHHHHHhccC
Confidence 433221 2689999999998865 788999 999999999 99 99999999999988743
No 9
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.82 E-value=2.6e-19 Score=139.42 Aligned_cols=110 Identities=35% Similarity=0.546 Sum_probs=102.1
Q ss_pred EEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
+.+.+++||++++.+++++++|++||+|+++.|+..+++. ++ .+..||+.||+.++++
T Consensus 70 ~~~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~---~~-------------------~~~~i~~~~~~~e~~~ 127 (180)
T TIGR03263 70 AEVHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKK---FP-------------------DAVSIFILPPSLEELE 127 (180)
T ss_pred EEECCeeeCCcHHHHHHHHHCCCeEEEECCHHHHHHHHHh---CC-------------------CcEEEEEECCCHHHHH
Confidence 4688999999999999999999999999999999999999 54 6899999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHH
Q psy18086 83 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 83 ~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~ 142 (166)
+||++|+.+++++|+.||..+..++.+.+ .||++|+|+ ++ ++++++|++++.
T Consensus 128 ~Rl~~r~~~~~~~i~~rl~~~~~~~~~~~----~~d~~i~n~-~~---~~~~~~l~~~~~ 179 (180)
T TIGR03263 128 RRLRKRGTDSEEVIERRLAKAKKEIAHAD----EFDYVIVND-DL---EKAVEELKSIIL 179 (180)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHhccc----cCcEEEECC-CH---HHHHHHHHHHHh
Confidence 99999999999999999999977777766 899999999 99 999999999875
No 10
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.78 E-value=3.8e-18 Score=135.60 Aligned_cols=112 Identities=37% Similarity=0.560 Sum_probs=103.7
Q ss_pred EEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
..+.|++||++.++|+.+++.|++||+|++++|+..+++. ++ .+++||+.|||.++++
T Consensus 74 ~~~~~~~y~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~---~~-------------------~~~~I~i~~~s~~~l~ 131 (205)
T PRK00300 74 AEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKK---MP-------------------DAVSIFILPPSLEELE 131 (205)
T ss_pred EEECCccccCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHh---CC-------------------CcEEEEEECcCHHHHH
Confidence 4678999999999999999999999999999999999998 55 6899999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhh
Q psy18086 83 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 83 ~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~ 144 (166)
+||..|+.++++.+++|+..+..++.+.+ .||++|+|+ ++ ++++.+|.+++...
T Consensus 132 ~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~----~~d~vi~n~-~~---e~~~~~l~~il~~~ 185 (205)
T PRK00300 132 RRLRGRGTDSEEVIARRLAKAREEIAHAS----EYDYVIVND-DL---DTALEELKAIIRAE 185 (205)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhHH----hCCEEEECC-CH---HHHHHHHHHHHHHH
Confidence 99999999999999999999887776655 899999999 99 99999999999887
No 11
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.56 E-value=4e-14 Score=112.47 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=84.1
Q ss_pred EEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
|.++||+|||++ +++..+++|+.||++........+++. ++. ...+||+. +|.+++.
T Consensus 69 ~~~~g~~yg~~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~---~~~------------------~~~vi~l~-~s~e~l~ 125 (186)
T PRK10078 69 WHANGLYYGVGI-EIDLWLHAGFDVLVNGSRAHLPQARAR---YQS------------------ALLPVCLQ-VSPEILR 125 (186)
T ss_pred HHHhCCccCCcH-HHHHHHhCCCEEEEeChHHHHHHHHHH---cCC------------------CEEEEEEe-CCHHHHH
Confidence 567899999999 699999999999997776666677877 541 34445555 5799999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCccc-EEEEcCCCCCCHhHHHHHHHHHHHhhh
Q psy18086 83 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYG-IISELAFFLEYNSAAGEIFEHFGLKSS 145 (166)
Q Consensus 83 ~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD-~vIvNd~dl~~~e~a~~~l~~ii~~~~ 145 (166)
+||..|++++++++..|++++. .+. .+| ++|.|++++ +++++++.+++..+.
T Consensus 126 ~RL~~R~~~~~~~i~~rl~r~~---~~~-----~ad~~vi~~~~s~---ee~~~~i~~~l~~~~ 178 (186)
T PRK10078 126 QRLENRGRENASEINARLARAA---RYQ-----PQDCHTLNNDGSL---RQSVDTLLTLLHLSQ 178 (186)
T ss_pred HHHHHhCCCCHHHHHHHHHHhh---hhc-----cCCEEEEeCCCCH---HHHHHHHHHHHhhcC
Confidence 9999998889999999996542 221 357 556666679 999999999886554
No 12
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.8e-13 Score=111.93 Aligned_cols=113 Identities=21% Similarity=0.196 Sum_probs=96.5
Q ss_pred CeEEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHH
Q psy18086 1 MNVIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEE 80 (166)
Q Consensus 1 ~~~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~ 80 (166)
|.|+.||.+||++. +|..+++.|.++|.+.+.--+.++|+. |+ ...+|.|.. ++++
T Consensus 72 lsWqAhGL~Ygip~-eId~wl~~G~vvl~NgSRa~Lp~arrr---y~-------------------~Llvv~ita-~p~V 127 (192)
T COG3709 72 LSWQAHGLSYGIPA-EIDLWLAAGDVVLVNGSRAVLPQARRR---YP-------------------QLLVVCITA-SPEV 127 (192)
T ss_pred EEehhcCccccCch-hHHHHHhCCCEEEEeccHhhhHHHHHh---hh-------------------cceeEEEec-CHHH
Confidence 46999999999996 999999999999999999999999999 77 566677776 4899
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCccc-EEEEcCCCCCCHhHHHHHHHHHHHhhhh
Q psy18086 81 LETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYG-IISELAFFLEYNSAAGEIFEHFGLKSSE 146 (166)
Q Consensus 81 Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD-~vIvNd~dl~~~e~a~~~l~~ii~~~~~ 146 (166)
|.+||..||+||.++|..||.++.... .+ ..| ++|.|+|.+ +.|.++|.+.+.+...
T Consensus 128 LaqRL~~RGREs~eeI~aRL~R~a~~~-~~-----~~dv~~idNsG~l---~~ag~~ll~~l~~~~a 185 (192)
T COG3709 128 LAQRLAERGRESREEILARLARAARYT-AG-----PGDVTTIDNSGEL---EDAGERLLALLHQDSA 185 (192)
T ss_pred HHHHHHHhccCCHHHHHHHHHhhcccc-cC-----CCCeEEEcCCCcH---HHHHHHHHHHHHhhcc
Confidence 999999999999999999999885322 11 346 569999999 9999999999986554
No 13
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.41 E-value=1.3e-12 Score=100.40 Aligned_cols=68 Identities=34% Similarity=0.456 Sum_probs=63.8
Q ss_pred EEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
++++||+||+++++|++++++|++||+|+|++|++++|+. ++ ++++|||.||
T Consensus 69 ~~~~~~~yg~~~~~i~~~~~~g~~~il~~~~~~~~~l~~~---~~-------------------~~~~I~i~~~------ 120 (137)
T cd00071 69 AEFHGNYYGTSKAAVEEALAEGKIVILEIDVQGARQVKKS---YP-------------------DAVSIFILPP------ 120 (137)
T ss_pred EEEcCEEecCcHHHHHHHHhCCCeEEEEecHHHHHHHHHc---CC-------------------CeEEEEEECC------
Confidence 5789999999999999999999999999999999999998 54 8999999998
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHH
Q psy18086 83 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIF 137 (166)
Q Consensus 83 ~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l 137 (166)
|++|+|+ ++ +.|+++|
T Consensus 121 -----------------------------------~~~~~~~-~~---~~~~~~~ 136 (137)
T cd00071 121 -----------------------------------DYVIVND-DL---EKAYEEL 136 (137)
T ss_pred -----------------------------------CeEEeCC-CH---HHHHHhh
Confidence 8899999 99 9999886
No 14
>KOG0708|consensus
Probab=99.37 E-value=4e-12 Score=113.21 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=100.3
Q ss_pred EEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHH
Q psy18086 4 IIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELET 83 (166)
Q Consensus 4 ~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~ 83 (166)
+++|++|||+.++|+++.++|+.||||+..+|++.++.. .+ .|++|||.|-|.+.++.
T Consensus 241 q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~-~I---------------------yPIvIfIr~ks~~~i~e 298 (359)
T KOG0708|consen 241 QRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRN-QI---------------------YPIVIFIRVKSKKQIKE 298 (359)
T ss_pred ccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhc-ce---------------------eceEEEEEechHHHHHH
Confidence 467899999999999999999999999999999999997 77 58999999999988876
Q ss_pred HhhcCCCCCHHHHHHHHHHHHH-HhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhhhhhhhccCCcccchh
Q psy18086 84 RLRGRGTETEDSLRRRLDLARR-DMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKSSEIQSHRNPNLQLRR 159 (166)
Q Consensus 84 RL~~Rgtetee~I~~Rl~~A~~-e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~~~~~~~~~~~~~~~~ 159 (166)
+=.+ .|.++-++-++.|.. |.+++. +|..+|.-+ ++ +..+.+++.+|..+. ++-+|+|+
T Consensus 299 ~~~~---~t~~~ake~~e~a~klEqe~~~----~~t~vv~~~-s~---e~i~~qvk~~I~~Eq------~k~iWVp~ 358 (359)
T KOG0708|consen 299 RNLK---ITGEQAKELLERARKLEQELDR----YFTLVVQGG-SL---EELLSQVKDIIEDEQ------KKVIWVPA 358 (359)
T ss_pred Hhcc---cchHHHHHHHHHHHHhHhhhhh----ceEEEEecc-cH---HHHHHHHHHHHHHhh------CCeEeeeC
Confidence 5422 466677777788865 677776 888888866 99 999999999998877 78899886
No 15
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.30 E-value=6.8e-11 Score=92.33 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=87.2
Q ss_pred EEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
+.++|++||++. .+...+.+|+.||++.+.++...+++. ++ ...+||+.+ |.+++.
T Consensus 70 ~~~~~~~~g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~---~~-------------------~~~~i~l~~-~~~~~~ 125 (179)
T TIGR02322 70 WQAHGLSYGIPA-EIDQWLEAGDVVVVNGSRAVLPEARQR---YP-------------------NLLVVNITA-SPDVLA 125 (179)
T ss_pred EeecCccccChH-HHHHHHhcCCEEEEECCHHHHHHHHHH---CC-------------------CcEEEEEEC-CHHHHH
Confidence 567889999997 688899999999999999888888776 54 567889986 589999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEE-EEcCCCCCCHhHHHHHHHHHHHh
Q psy18086 83 TRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGII-SELAFFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 83 ~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~v-IvNd~dl~~~e~a~~~l~~ii~~ 143 (166)
+||..|++.+++++..||...... .. . .+|++ |.|++++ +++++++.+++.+
T Consensus 126 ~Rl~~R~~~~~~~~~~rl~~~~~~-~~-~----~~~~~vi~~~~~~---ee~~~~i~~~l~~ 178 (179)
T TIGR02322 126 QRLAARGRESREEIEERLARSARF-AA-A----PADVTTIDNSGSL---EVAGETLLRLLRK 178 (179)
T ss_pred HHHHHcCCCCHHHHHHHHHHHhhc-cc-c----cCCEEEEeCCCCH---HHHHHHHHHHHcc
Confidence 999999988888999998654322 11 2 46766 6676789 9999999998864
No 16
>PRK08356 hypothetical protein; Provisional
Probab=98.85 E-value=4e-09 Score=84.47 Aligned_cols=110 Identities=20% Similarity=0.191 Sum_probs=70.1
Q ss_pred ccccccCc---HHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 6 YLKSYMVN---RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 6 ~gn~YGTs---~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
.+++|||+ +..++.+ .... +++++|++++.+... +. .. ...+|||.+| .+++.
T Consensus 74 ~~~~yG~~~~~~~~~~~~-~~~~----~ividG~r~~~q~~~-l~------------~~-----~~~vi~l~~~-~~~~~ 129 (195)
T PRK08356 74 LKEKYGEDILIRLAVDKK-RNCK----NIAIDGVRSRGEVEA-IK------------RM-----GGKVIYVEAK-PEIRF 129 (195)
T ss_pred HHHhcCcHHHHHHHHHHh-ccCC----eEEEcCcCCHHHHHH-HH------------hc-----CCEEEEEECC-HHHHH
Confidence 46899998 3444444 2222 244458888876411 11 00 2368899887 69999
Q ss_pred HHhhcCCCC------CHHHHHHHHHHHHHHhhc-CCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhh
Q psy18086 83 TRLRGRGTE------TEDSLRRRLDLARRDMSY-GKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 83 ~RL~~Rgte------tee~I~~Rl~~A~~e~~~-~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~ 144 (166)
+||++|+++ +.+++ .|+..++.++.. ..... .+|++|+|++++ +++.+++.+++...
T Consensus 130 ~Rl~~R~~~~~~~~~~~e~~-~~~~~~~~~l~~~~~~~~-~aD~vI~N~~~~---e~~~~~i~~~~~~~ 193 (195)
T PRK08356 130 ERLRRRGAEKDKGIKSFEDF-LKFDEWEEKLYHTTKLKD-KADFVIVNEGTL---EELRKKVEEILREL 193 (195)
T ss_pred HHHHhcCCccccccccHHHH-HHHHHHHHHhhhhhhHHH-hCcEEEECCCCH---HHHHHHHHHHHHHh
Confidence 999999877 44555 444444443211 11012 799999997799 99999999998754
No 17
>PRK04040 adenylate kinase; Provisional
Probab=98.81 E-value=3.1e-08 Score=80.14 Aligned_cols=69 Identities=26% Similarity=0.276 Sum_probs=57.5
Q ss_pred ceEEEEEeCCCHHHHHHHhhc----CCCCCHHHHHHHHHHHHHH-hhcCCCCCCcccEEEEcCCC--CCCHhHHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRG----RGTETEDSLRRRLDLARRD-MSYGKDSLRSYGIISELAFF--LEYNSAAGEIFEH 139 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~----Rgtetee~I~~Rl~~A~~e-~~~~~~~~~~fD~vIvNd~d--l~~~e~a~~~l~~ 139 (166)
..+++|..||+ +.|++|++. |++++++.|+.+++.++.+ +.++...+ .|+++|+|+ + + +.|+++|.+
T Consensus 112 d~ii~l~a~p~-~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g-~~~~iI~N~-d~~~---e~a~~~i~~ 185 (188)
T PRK04040 112 DVIVLIEADPD-EILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTG-ATVKIVENR-EGLL---EEAAEEIVE 185 (188)
T ss_pred CEEEEEeCCHH-HHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEECC-CCCH---HHHHHHHHH
Confidence 56777777775 889999964 8889999999999999876 44665556 799999999 7 9 999999999
Q ss_pred HH
Q psy18086 140 FG 141 (166)
Q Consensus 140 ii 141 (166)
++
T Consensus 186 ii 187 (188)
T PRK04040 186 VL 187 (188)
T ss_pred Hh
Confidence 87
No 18
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.34 E-value=8.1e-07 Score=72.44 Aligned_cols=68 Identities=16% Similarity=0.045 Sum_probs=54.0
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhh
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~ 144 (166)
.+|+|.+ |.+++.+||.+|+..+++++..|++....+..... .+|++|+|++++ ++..+++..++...
T Consensus 136 ~ii~V~a-~~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~~~~~----~ad~vI~N~g~~---e~l~~~i~~~~~~~ 203 (208)
T PRK14731 136 FIVVVAA-DTELRLERAVQRGMGSREEIRRRIAAQWPQEKLIE----RADYVIYNNGTL---DELKAQTEQLYQVL 203 (208)
T ss_pred eEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHHcCChHHHHH----hCCEEEECCCCH---HHHHHHHHHHHHHH
Confidence 4566655 59999999999998999999999986533333333 679999999999 99999999887654
No 19
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.27 E-value=4.5e-06 Score=65.57 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=72.0
Q ss_pred ccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHh
Q psy18086 6 YLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRL 85 (166)
Q Consensus 6 ~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL 85 (166)
.++.|++..+.++..+++|..||+|....+...++.....+. | ....+||+.|| .++|.+|+
T Consensus 67 ~~~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~--------------~---~~~~~v~l~~~-~~~l~~R~ 128 (175)
T cd00227 67 FRLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFV--------------G---LDVLWVGVRCP-GEVAEGRE 128 (175)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhc--------------C---CCEEEEEEECC-HHHHHHHH
Confidence 346899999999999999999999987665455543311011 1 24688999987 69999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCC-CCCCHhHHHHHHHHHH
Q psy18086 86 RGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAF-FLEYNSAAGEIFEHFG 141 (166)
Q Consensus 86 ~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~-dl~~~e~a~~~l~~ii 141 (166)
.+|+... .++..+..+.-+. +. .+|++|.+++ ++ +++.+++.+.+
T Consensus 129 ~~R~~~~-----~~~~~~~~~~~~~--~~-~~dl~iDts~~s~---~e~a~~i~~~l 174 (175)
T cd00227 129 TARGDRV-----PGQARKQARVVHA--GV-EYDLEVDTTHKTP---IECARAIAARV 174 (175)
T ss_pred HhcCCcc-----chHHHHHHHHhcC--CC-cceEEEECCCCCH---HHHHHHHHHhc
Confidence 9998542 2333332232221 33 7899998873 46 77777776543
No 20
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.11 E-value=2e-05 Score=63.50 Aligned_cols=67 Identities=13% Similarity=-0.018 Sum_probs=52.4
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHh
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~ 143 (166)
.+|+|.+| .++..+||.+|...|++++..|+........... ..|++|.|++++ +....++..++.+
T Consensus 127 ~vi~V~a~-~e~~~~Rl~~R~~~s~e~~~~ri~~Q~~~~~~~~----~ad~vI~N~g~~---e~l~~qv~~i~~~ 193 (194)
T PRK00081 127 RVLVVDAP-PETQLERLMARDGLSEEEAEAIIASQMPREEKLA----RADDVIDNNGDL---EELRKQVERLLQE 193 (194)
T ss_pred eEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHH----hCCEEEECCCCH---HHHHHHHHHHHHh
Confidence 56788876 8889999999988899999999985322222222 579999999999 9999999988753
No 21
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.93 E-value=4.5e-05 Score=60.53 Aligned_cols=62 Identities=16% Similarity=0.037 Sum_probs=48.2
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFE 138 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~ 138 (166)
.+|||.+| .++..+||.+|...|++++..|+........... .+|++|.|++++ ++...++.
T Consensus 126 ~vv~V~~~-~~~~~~Rl~~R~~~s~~~~~~r~~~q~~~~~~~~----~ad~vI~N~~~~---e~l~~~~~ 187 (188)
T TIGR00152 126 RVIVVDVS-PQLQLERLMQRDNLTEEEVQKRLASQMDIEERLA----RADDVIDNSATL---ADLVKQLE 187 (188)
T ss_pred EEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCCHHHHHH----hCCEEEECCCCH---HHHHHHHh
Confidence 56788876 8999999999987899999999987633322222 679999999888 77766654
No 22
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.76 E-value=0.00014 Score=59.29 Aligned_cols=68 Identities=15% Similarity=-0.093 Sum_probs=53.0
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhh
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~ 144 (166)
.+|||.+| .++-.+||.+|+..|++++..|+..-........ .+|++|.|++++ +....++..++.+.
T Consensus 124 ~vi~V~a~-~e~r~~RL~~R~g~s~e~a~~ri~~Q~~~~~k~~----~aD~vI~N~~~~---~~l~~~v~~l~~~~ 191 (196)
T PRK14732 124 ATVTVDSD-PEESILRTISRDGMKKEDVLARIASQLPITEKLK----RADYIVRNDGNR---EGLKEECKILYSTL 191 (196)
T ss_pred EEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHcCCHHHHHH----hCCEEEECCCCH---HHHHHHHHHHHHHH
Confidence 67899986 7888899999987899999999876211222333 679999999999 88888888887543
No 23
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.68 E-value=0.00013 Score=62.04 Aligned_cols=68 Identities=16% Similarity=-0.058 Sum_probs=53.9
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcC--CCCCCHhHHHHHHHHHHHhh
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELA--FFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd--~dl~~~e~a~~~l~~ii~~~ 144 (166)
.+|+|.+| .++..+||.+|+..|+++++.|+..--....... .+|++|.|+ +++ +....++..++...
T Consensus 139 ~iv~V~a~-~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~~ek~~----~aD~VI~N~~~g~~---~~L~~~v~~~~~~~ 208 (244)
T PTZ00451 139 ASVVVSCS-EERQIERLRKRNGFSKEEALQRIGSQMPLEEKRR----LADYIIENDSADDL---DELRGSVCDCVAWM 208 (244)
T ss_pred eEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhCCCHHHHHH----hCCEEEECCCCCCH---HHHHHHHHHHHHHH
Confidence 67888775 8999999999977899999999966222333333 789999999 999 99999999887553
No 24
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.59 E-value=0.00052 Score=55.71 Aligned_cols=66 Identities=15% Similarity=-0.024 Sum_probs=49.9
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~ 142 (166)
.+|||.+| .++..+||.+|+..|++++..|+..--....... ..|++|.|++++ +...+++.+++.
T Consensus 128 ~ii~V~a~-~e~r~~Rl~~R~g~s~e~~~~ri~~Q~~~~~k~~----~aD~vI~N~g~~---e~l~~qv~~~l~ 193 (195)
T PRK14730 128 EIWVVDCS-PEQQLQRLIKRDGLTEEEAEARINAQWPLEEKVK----LADVVLDNSGDL---EKLYQQVDQLLK 193 (195)
T ss_pred EEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhCCCHHHHHh----hCCEEEECCCCH---HHHHHHHHHHHh
Confidence 47888886 8888999999977899999999864211111112 579999999999 988888887763
No 25
>PRK01184 hypothetical protein; Provisional
Probab=97.57 E-value=0.0012 Score=51.72 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=50.5
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCC----CCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGT----ETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgt----etee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~ 142 (166)
...+|+|.+| .++..+||..|+. .+.+++..|+.... .+.....- ...|++|.|++++ ++..+++..++.
T Consensus 104 ~~~~i~v~~~-~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~-~~~~~~~~-~~ad~vI~N~~~~---~~l~~~v~~~~~ 177 (184)
T PRK01184 104 DFILIAIHAP-PEVRFERLKKRGRSDDPKSWEELEERDEREL-SWGIGEVI-ALADYMIVNDSTL---EEFRARVRKLLE 177 (184)
T ss_pred ccEEEEEECC-HHHHHHHHHHcCCCCChhhHHHHHHHHHHHh-ccCHHHHH-HhcCEEEeCCCCH---HHHHHHHHHHHH
Confidence 3467888876 8889999998873 35677887776431 11110000 1569999999899 999999999886
Q ss_pred hhh
Q psy18086 143 KSS 145 (166)
Q Consensus 143 ~~~ 145 (166)
...
T Consensus 178 ~~~ 180 (184)
T PRK01184 178 RIL 180 (184)
T ss_pred HHh
Confidence 543
No 26
>PLN02422 dephospho-CoA kinase
Probab=97.53 E-value=0.0015 Score=55.24 Aligned_cols=68 Identities=19% Similarity=0.042 Sum_probs=52.3
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhh
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~ 144 (166)
.+|||.+| .++..+||.+|+..|++++..|++.-...-.... ..|++|.|++++ ++...++.+++...
T Consensus 128 ~vI~V~a~-~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~eek~~----~AD~VI~N~gs~---e~L~~qv~~ll~~l 195 (232)
T PLN02422 128 PVVVVWVD-PETQLERLMARDGLSEEQARNRINAQMPLDWKRS----KADIVIDNSGSL---EDLKQQFQKVLEKI 195 (232)
T ss_pred EEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHcCChhHHHh----hCCEEEECCCCH---HHHHHHHHHHHHHH
Confidence 57888886 8999999999977899999999843211111122 579999999999 99999999888665
No 27
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.46 E-value=0.002 Score=50.68 Aligned_cols=112 Identities=14% Similarity=0.121 Sum_probs=65.8
Q ss_pred cccccCcHHHHHHHHhcCCcEEEE------eCHHHH---------HHHHHhhccCCccchhhchhhhhhccCCCCceEEE
Q psy18086 7 LKSYMVNRAAVEAVINSGKTCVLD------IEVQGV---------QQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYV 71 (166)
Q Consensus 7 gn~YGTs~~~V~~v~~~Gk~~vld------id~~Gv---------~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 71 (166)
.+.|++....+...+++|+++|+| +..+++ ..+... + .++...+ ++|
T Consensus 71 ~~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~---~--------------~~~~~pd-~~i 132 (205)
T PRK00698 71 AARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDF---A--------------LGGFRPD-LTL 132 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHH---H--------------hCCCCCC-EEE
Confidence 345666666777778899999998 222221 222222 1 0011123 677
Q ss_pred EEeCCCHHHHHHHhhcCCCCCH-----HHHHHHHHHHHHHhhcCCCCCCccc-EEEEcCCCCCCHhHHHHHHHHHHHhh
Q psy18086 72 FVKPPSIEELETRLRGRGTETE-----DSLRRRLDLARRDMSYGKDSLRSYG-IISELAFFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 72 FI~PPS~e~Le~RL~~Rgtete-----e~I~~Rl~~A~~e~~~~~~~~~~fD-~vIvNd~dl~~~e~a~~~l~~ii~~~ 144 (166)
|+..| .+++.+||.+|+..+. .+...++..+...+.... .++ ++|.+++++ ++..+++.+++.+.
T Consensus 133 ~l~~~-~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~----~~~~~~Id~~~~~---e~v~~~i~~~i~~~ 203 (205)
T PRK00698 133 YLDVP-PEVGLARIRARGELDRIEQEGLDFFERVREGYLELAEKE----PERIVVIDASQSL---EEVHEDILAVIKAW 203 (205)
T ss_pred EEeCC-HHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHhC----CCeEEEEeCCCCH---HHHHHHHHHHHHHH
Confidence 77775 5899999999974321 144566665444443211 234 445555678 88888888888653
No 28
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.23 E-value=0.001 Score=54.24 Aligned_cols=68 Identities=21% Similarity=0.086 Sum_probs=51.9
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhh
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~ 144 (166)
.+|||.+| .++..+||..|..-+++++..|+..-........ ..|++|.|++++ +...+++..++...
T Consensus 128 ~vi~V~a~-~e~ri~Rl~~R~g~s~e~~~~ri~~Q~~~~~k~~----~ad~vI~N~g~~---e~l~~~v~~~~~~~ 195 (200)
T PRK14734 128 LVVVVDVD-VEERVRRLVEKRGLDEDDARRRIAAQIPDDVRLK----AADIVVDNNGTR---EQLLAQVDGLIAEI 195 (200)
T ss_pred eEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCCHHHHHH----hCCEEEECcCCH---HHHHHHHHHHHHHH
Confidence 58899986 8888999988855789999999875422222222 568999999999 99999999887544
No 29
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.99 E-value=0.0033 Score=49.77 Aligned_cols=54 Identities=17% Similarity=0.058 Sum_probs=41.8
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCC
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFL 127 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl 127 (166)
.+|||.+| .++..+|+..|...|++++..|+........... ..|++|.|++++
T Consensus 124 ~vv~V~a~-~~~ri~Rl~~Rd~~s~~~~~~r~~~Q~~~~~~~~----~aD~vI~N~~~~ 177 (179)
T cd02022 124 RVIVVDAP-PEIQIERLMKRDGLSEEEAEARIASQMPLEEKRA----RADFVIDNSGSL 177 (179)
T ss_pred eEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCCHHHHHH----hCCEEEECcCCC
Confidence 57888886 7888899999977899999999887432222333 689999999776
No 30
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.92 E-value=0.0026 Score=52.69 Aligned_cols=68 Identities=12% Similarity=-0.010 Sum_probs=51.5
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCC-CCCCHhHHHHHHHHHHHhh
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAF-FLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~-dl~~~e~a~~~l~~ii~~~ 144 (166)
.+|+|.+| .++-.+||.+|...|+++...|++.--.+-.... ..|+||.|++ ++ +..-.++.+++.+.
T Consensus 131 ~vi~V~a~-~e~ri~Rl~~Rd~~s~~~a~~ri~~Q~~~eek~~----~aD~VI~N~g~~~---~~l~~~~~~~~~~~ 199 (204)
T PRK14733 131 KVIVIKAD-LETRIRRLMERDGKNRQQAVAFINLQISDKEREK----IADFVIDNTELTD---QELESKLITTINEI 199 (204)
T ss_pred EEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhCCCHHHHHH----hCCEEEECcCCCH---HHHHHHHHHHHHHH
Confidence 36788876 7888899999876799999999864211111222 5699999999 99 99999999888765
No 31
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.40 E-value=0.038 Score=45.80 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=83.7
Q ss_pred ccccCcHHHHHHHHhcCCcEEEEeCHHHH----------HHHHHhhccCCccc--------------hhhch-------h
Q psy18086 8 KSYMVNRAAVEAVINSGKTCVLDIEVQGV----------QQVKRAGGAMAGAV--------------YVFGV-------Q 56 (166)
Q Consensus 8 n~YGTs~~~V~~v~~~Gk~~vldid~~Gv----------~~lk~~~~~~~~~~--------------~~~~~-------~ 56 (166)
=..|+.|+++-+.++++..+++|.|.-.- ..+.+. |+.++ .||.- .
T Consensus 9 G~igsGKStva~~~~~~G~~vidaD~v~r~~~~~~~~~~~~i~~~---fG~~i~~~dg~~~r~~L~~~vf~~~~~~~~Le 85 (201)
T COG0237 9 GGIGSGKSTVAKILAELGFPVIDADDVAREVVEPGGEALQEIAER---FGLEILDEDGGLDRRKLREKVFNDPEARLKLE 85 (201)
T ss_pred cCCCCCHHHHHHHHHHcCCeEEEccHHHHHHHhccchHHHHHHHH---cCCcccCCCchhHHHHHHHHHcCCHHHHHHHH
Confidence 35799999999999998899999997443 244444 33222 11110 0
Q ss_pred hh---------------hh-------------ccCCCCceEEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHH-Hh
Q psy18086 57 QV---------------KR-------------AGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR-DM 107 (166)
Q Consensus 57 ~~---------------~~-------------~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~-e~ 107 (166)
.+ .+ .||...-..+|.|..| .+.=.+||++|+..|+++.+.|+..-.. +-
T Consensus 86 ~i~hPli~~~~~~~~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~-~e~r~eRl~~R~~~~~e~~~~~~~~Q~~~~e 164 (201)
T COG0237 86 KILHPLIRAEIKVVIDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAP-PEIRLERLMKRDGLDEEDAEARLASQRDLEE 164 (201)
T ss_pred HhhhHHHHHHHHHHHHHhhCCceEEEchHHHhccccccCCEEEEEECC-HHHHHHHHHhcCCCCHHHHHHHHHhcCCHHH
Confidence 01 11 1232222256777765 6777789999998898888888775432 21
Q ss_pred hcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhhhh
Q psy18086 108 SYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKSSE 146 (166)
Q Consensus 108 ~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~~~ 146 (166)
.++ .-|+++.|++++ +...+++..++.....
T Consensus 165 k~~-----~ad~vi~n~~~i---~~l~~~i~~~~~~~~~ 195 (201)
T COG0237 165 KLA-----LADVVIDNDGSI---ENLLEQIEKLLKELLG 195 (201)
T ss_pred HHh-----hcCChhhcCCCH---HHHHHHHHHHHHHHHh
Confidence 232 569999999999 8899999988876654
No 32
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.09 E-value=0.038 Score=49.73 Aligned_cols=69 Identities=14% Similarity=0.023 Sum_probs=49.6
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhhh
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKSS 145 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~~ 145 (166)
.+|||..| .++..+|+..|...++++...|+........... ..|++|.|++++ +....++.+++....
T Consensus 126 ~iI~V~ap-~e~ri~Rl~~rRg~s~~~a~~ri~~Q~~~e~k~~----~AD~vIdN~~s~---e~l~~~v~~~l~~~~ 194 (395)
T PRK03333 126 LVVVVDAD-VEVRVRRLVEQRGMAEADARARIAAQASDEQRRA----VADVWLDNSGTP---DELVEAVRALWADRL 194 (395)
T ss_pred EEEEEECC-HHHHHHHHHhcCCCCHHHHHHHHHhcCChHHHHH----hCCEEEECCCCH---HHHHHHHHHHHHHHH
Confidence 57899986 8899999988433678888888765321111122 569999999898 888888888776553
No 33
>KOG3580|consensus
Probab=95.92 E-value=0.047 Score=53.01 Aligned_cols=106 Identities=18% Similarity=0.212 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH---HHhhcCCC
Q psy18086 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE---TRLRGRGT 90 (166)
Q Consensus 14 ~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le---~RL~~Rgt 90 (166)
...|+.++++.|..+||+.+.++..|-=. .. .|++||+.|.|.+.+. +||- .
T Consensus 677 L~TvrqiieqDKHALLDVTP~AvdrLNY~-Qw---------------------ypIVvff~PdSrqgvktmRqrL~---P 731 (1027)
T KOG3580|consen 677 LNTVRQIIEQDKHALLDVTPKAVDRLNYT-QW---------------------YPIVVFFNPDSRQGVKTMRQRLA---P 731 (1027)
T ss_pred ehhhHHHHhcccchhhccCHHHHhhhccc-ee---------------------eeEEEEeCCcchHHHHHHHHHhC---c
Confidence 45789999999999999999999887644 33 5899999999877554 4443 2
Q ss_pred CCHHHHHHHHHHHHHH-hhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhhhhhhhccCCcccc
Q psy18086 91 ETEDSLRRRLDLARRD-MSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKSSEIQSHRNPNLQL 157 (166)
Q Consensus 91 etee~I~~Rl~~A~~e-~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~~~~~~~~~~~~~~ 157 (166)
.+..+-.+-.+.|..- ...+| .|..+|..++. |+.=|..|+++| |+|+|--+|+
T Consensus 732 ~Sr~SsRkLy~~a~KL~K~~~H----LFTaTInLNs~---nD~Wyg~LK~~i------q~QQ~~~vWv 786 (1027)
T KOG3580|consen 732 TSRKSSRKLYDQANKLKKTCAH----LFTATINLNSA---NDSWYGSLKDTI------QHQQGEAVWV 786 (1027)
T ss_pred ccchhHHHHHHHHHHHhhhchh----heEeeeccCCC---ChhHHHHHHHHH------HHhcCceeEe
Confidence 3444555555566432 23444 99999876623 377788888876 5566766665
No 34
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.81 E-value=0.06 Score=44.10 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=60.2
Q ss_pred HHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCCCCC----
Q psy18086 17 VEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET---- 92 (166)
Q Consensus 17 V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgtet---- 92 (166)
++..+..|..+++|.-...-..+..... + ...++|+..|+.+++++|+..|+.++
T Consensus 90 a~~~l~~G~sVIvEgv~l~p~~~~~~~~--~-------------------~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~ 148 (197)
T PRK12339 90 IRRALLNGEDLVIESLYFHPPMIDENRT--N-------------------NIRAFYLYIRDAELHRSRLADRINYTHKNS 148 (197)
T ss_pred HHHHHHcCCCEEEEecCcCHHHHHHHHh--c-------------------CeEEEEEEeCCHHHHHHHHHHHhhcccCCC
Confidence 5678889999999965444444433311 1 46778888888999999999887532
Q ss_pred HHH-HHHHHHHHHHH----hhcCCCCCCccc-EEEEcCCCCCCHhHHHHHHHHHHH
Q psy18086 93 EDS-LRRRLDLARRD----MSYGKDSLRSYG-IISELAFFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 93 ee~-I~~Rl~~A~~e----~~~~~~~~~~fD-~vIvNd~dl~~~e~a~~~l~~ii~ 142 (166)
+.+ .-+-+..-+.- ++.++ .++ -+|.|+ ++ +.+.+.+.+.+.
T Consensus 149 p~~~~~~~~~~ir~i~~~l~~~a~----~~~i~~i~~~-~~---~~~~~~~~~~~~ 196 (197)
T PRK12339 149 PGKRLAEHLPEYRTIMDYSIADAR----GYNIKVIDTD-NY---REARNPLLDPIS 196 (197)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----HcCCCeecCc-cH---HHHHHHHHHHhc
Confidence 121 22222222111 12233 344 367888 99 999998887654
No 35
>PRK06762 hypothetical protein; Provisional
Probab=95.74 E-value=0.41 Score=36.63 Aligned_cols=49 Identities=20% Similarity=0.113 Sum_probs=32.7
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCC---CCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcC
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGT---ETEDSLRRRLDLARRDMSYGKDSLRSYGIISELA 124 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgt---etee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd 124 (166)
...+||+.+| .++..+|+..|.. .+++.|+.++..- ..+ . .+|++|+++
T Consensus 96 ~~~~v~Ldap-~e~~~~R~~~R~~~~~~~~~~l~~~~~~~-~~~------~-~~~~~~~~~ 147 (166)
T PRK06762 96 NAYTYYFDLS-FEETLRRHSTRPKSHEFGEDDMRRWWNPH-DTL------G-VIGETIFTD 147 (166)
T ss_pred CeEEEEEeCC-HHHHHHHHhcccccccCCHHHHHHHHhhc-CCc------C-CCCeEEecC
Confidence 4578888886 7889999988854 3466666555432 111 1 468888887
No 36
>PRK04182 cytidylate kinase; Provisional
Probab=95.66 E-value=0.11 Score=39.76 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=46.4
Q ss_pred eEEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHH----Hh-h-c---CCCCCCcccEEEEcC-CCCCCHhHHHHHH
Q psy18086 68 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR----DM-S-Y---GKDSLRSYGIISELA-FFLEYNSAAGEIF 137 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~----e~-~-~---~~~~~~~fD~vIvNd-~dl~~~e~a~~~l 137 (166)
.+.|||.+| .+++.+|+..|...+.++....+..... .+ . + +..+. .||++|.++ .++ +++++.+
T Consensus 93 ~~~V~l~a~-~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~d~~idt~~~~~---~~~~~~I 167 (180)
T PRK04182 93 DLKIWLKAP-LEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLS-IYDLVINTSRWDP---EGVFDII 167 (180)
T ss_pred CEEEEEECC-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-cccEEEECCCCCH---HHHHHHH
Confidence 468899986 8999999998876665555444332211 11 1 1 11233 789999887 266 8888888
Q ss_pred HHHHHh
Q psy18086 138 EHFGLK 143 (166)
Q Consensus 138 ~~ii~~ 143 (166)
.+++..
T Consensus 168 ~~~~~~ 173 (180)
T PRK04182 168 LTAIDK 173 (180)
T ss_pred HHHHHH
Confidence 887754
No 37
>PRK14530 adenylate kinase; Provisional
Probab=95.64 E-value=0.078 Score=42.92 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=47.1
Q ss_pred eEEEEEeCCCHHHHHH----HhhcCCCCCHHHHHHHHHHHHHHh----hcCCCCCCcccEEEEcC-CCCCCHhHHHHHHH
Q psy18086 68 AVYVFVKPPSIEELET----RLRGRGTETEDSLRRRLDLARRDM----SYGKDSLRSYGIISELA-FFLEYNSAAGEIFE 138 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~----RL~~Rgtetee~I~~Rl~~A~~e~----~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~ 138 (166)
.+.+++.||+.+.+.. ||..|..++++.|++||.....+. +|-...+ -++.+|. .++ +..++.+.
T Consensus 135 ~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~---~~~~id~~~~~---~~v~~~i~ 208 (215)
T PRK14530 135 NYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQG---VLVEVDGEQTP---DEVWADIQ 208 (215)
T ss_pred ccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC---cEEEEECCCCH---HHHHHHHH
Confidence 4667777887766665 888888899999999999876532 2222111 2344554 477 88888888
Q ss_pred HHHHh
Q psy18086 139 HFGLK 143 (166)
Q Consensus 139 ~ii~~ 143 (166)
.++..
T Consensus 209 ~~l~~ 213 (215)
T PRK14530 209 DAIDD 213 (215)
T ss_pred HHHhc
Confidence 77753
No 38
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.61 E-value=0.17 Score=39.02 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=43.3
Q ss_pred EEEEEeCCCHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHh----hcCCCCCCcccEE-EEcCCCCCCHhHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGT------ETEDSLRRRLDLARRDM----SYGKDSLRSYGII-SELAFFLEYNSAAGEIF 137 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgt------etee~I~~Rl~~A~~e~----~~~~~~~~~fD~v-IvNd~dl~~~e~a~~~l 137 (166)
++||+..| .+++.+|+.+|+. ++++.+.+|+....... ++-...+ +++ |.+++++ ++..+++
T Consensus 109 ~vi~l~~~-~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~---~~~~id~~~~~---~~v~~~i 181 (188)
T TIGR01360 109 LVLYFDCS-EDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKG---KLRKINAEGTV---DDVFLQV 181 (188)
T ss_pred EEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCC---CEEEEECCCCH---HHHHHHH
Confidence 56777775 7899999988863 36788999998765432 2211111 444 4444566 7777777
Q ss_pred HHHHH
Q psy18086 138 EHFGL 142 (166)
Q Consensus 138 ~~ii~ 142 (166)
...+.
T Consensus 182 ~~~l~ 186 (188)
T TIGR01360 182 CTAID 186 (188)
T ss_pred HHHHh
Confidence 77764
No 39
>PRK13946 shikimate kinase; Provisional
Probab=95.57 E-value=0.42 Score=37.90 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=44.9
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCCC------CHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcC-CCCCCHhHHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGTE------TEDSLRRRLDLARRDMSYGKDSLRSYGIISELA-FFLEYNSAAGEIFEH 139 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgte------tee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ 139 (166)
..+.||+..| .+++.+|+..|... +..+.-+++...+... | . .+|++|+.+ ..+ +++++.+.+
T Consensus 103 ~~~~v~L~a~-~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~-y-~----~~dl~i~~~~~~~---~~~~~~i~~ 172 (184)
T PRK13946 103 KGISVWLKAD-LDVLWERVSRRDTRPLLRTADPKETLARLMEERYPV-Y-A----EADLTVASRDVPK---EVMADEVIE 172 (184)
T ss_pred CCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHH-H-H----hCCEEEECCCCCH---HHHHHHHHH
Confidence 3577999986 89999999887642 2223333444443322 2 2 468887554 355 788888888
Q ss_pred HHHhhhhh
Q psy18086 140 FGLKSSEI 147 (166)
Q Consensus 140 ii~~~~~~ 147 (166)
.+.+...+
T Consensus 173 ~i~~~~~~ 180 (184)
T PRK13946 173 ALAAYLEK 180 (184)
T ss_pred HHHHhhcc
Confidence 88765443
No 40
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.39 E-value=0.35 Score=37.10 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=38.0
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCH-----HHHHHHHHHHHHHhhcCCCCCCccc-EEEEcCCCCCCHhHHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETE-----DSLRRRLDLARRDMSYGKDSLRSYG-IISELAFFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtete-----e~I~~Rl~~A~~e~~~~~~~~~~fD-~vIvNd~dl~~~e~a~~~l~~ii~ 142 (166)
.+||+.+| .+++.+|+.+|+...+ .+..+++..+-..+.... ..+ ++|.++.++ ++..+++.+.|.
T Consensus 128 ~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~----~~~~~~id~~~~~---e~i~~~i~~~i~ 199 (200)
T cd01672 128 LTILLDID-PEVGLARIEARGRDDRDEQEGLEFHERVREGYLELAAQE----PERIIVIDASQPL---EEVLAEILKAIL 199 (200)
T ss_pred EEEEEeCC-HHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHhC----CCeEEEEeCCCCH---HHHHHHHHHHHh
Confidence 67777775 7999999999985332 345555555433332211 123 344444455 677777766553
No 41
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.13 E-value=0.63 Score=35.50 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=38.1
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHhhcCCCCCCcccEE-EEcCCCCCCHhHHHHHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGTE--TEDSLRRRLDLARRDMSYGKDSLRSYGII-SELAFFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgte--tee~I~~Rl~~A~~e~~~~~~~~~~fD~v-IvNd~dl~~~e~a~~~l~~ii~ 142 (166)
...+||+.+| .+++.+|+..|+.. ..+.+..+.... .... .. ..+++ |.+++.. ++..+++.+.+.
T Consensus 94 ~~~~i~l~~~-~e~~~~R~~~R~~~~~~~~~i~~~~~~~----~~~~-~~-e~~~~~id~~~~~---~~~~~~~~~~~~ 162 (163)
T TIGR01313 94 NLHFIYLSGD-KDVILERMKARKGHFMKADMLESQFAAL----EEPL-AD-ETDVLRVDIDQPL---EGVEEDCIAVVL 162 (163)
T ss_pred CEEEEEEeCC-HHHHHHHHHhccCCCCCHHHHHHHHHHh----CCCC-CC-CCceEEEECCCCH---HHHHHHHHHHHh
Confidence 4566788765 89999999998631 234444444332 2211 11 23545 4555566 677777766653
No 42
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.93 E-value=0.27 Score=37.25 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=42.3
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHH-H----hh-c---CCCCCCcccEEEEcCCCCCCHhHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR-D----MS-Y---GKDSLRSYGIISELAFFLEYNSAAGEIFEH 139 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~-e----~~-~---~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ 139 (166)
+.|||.+| .+...+|+..|+..++++...++..-.. + .. + +.++. .||.+|..+ .+.. ++ .+.+..
T Consensus 94 ~~v~v~a~-~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~-~ydl~i~t~-~~~~-~~-~~~i~~ 168 (171)
T TIGR02173 94 VKIWLKAP-LEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLS-IYDLVINTS-NWDP-NN-VDIILD 168 (171)
T ss_pred EEEEEECC-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-cccEEEECC-CCCH-HH-HHHHHH
Confidence 78999986 8888999999877777777766553321 1 11 1 12244 899888887 4411 33 444444
Q ss_pred H
Q psy18086 140 F 140 (166)
Q Consensus 140 i 140 (166)
+
T Consensus 169 ~ 169 (171)
T TIGR02173 169 A 169 (171)
T ss_pred H
Confidence 3
No 43
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=94.90 E-value=0.014 Score=47.24 Aligned_cols=54 Identities=20% Similarity=0.108 Sum_probs=35.9
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCC
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFL 127 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl 127 (166)
.+|+|..| .++-.+|+.+|..-+++++..|+..=-...+... ..|+||.|++++
T Consensus 125 ~vi~V~a~-~e~ri~Rl~~R~~~~~~~~~~ri~~Q~~~~~k~~----~ad~vI~N~g~~ 178 (180)
T PF01121_consen 125 EVIVVYAP-EEIRIKRLMERDGLSEEEAEARIASQMPDEEKRK----RADFVIDNNGSL 178 (180)
T ss_dssp EEEEEE---HHHHHHHHHHHHTSTHHHHHHHHHTS--HHHHHH----H-SEEEE-SSHH
T ss_pred eEEEEECC-HHHHHHHHHhhCCCcHHHHHHHHHhCCCHHHHHH----hCCEEEECCCCC
Confidence 57788876 7777889998866899999999875322222222 679999999776
No 44
>PRK14531 adenylate kinase; Provisional
Probab=94.77 E-value=0.16 Score=40.21 Aligned_cols=67 Identities=22% Similarity=0.147 Sum_probs=45.1
Q ss_pred EEEEEeCCCHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHh----hcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGT--ETEDSLRRRLDLARRDM----SYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFG 141 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgt--etee~I~~Rl~~A~~e~----~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii 141 (166)
.+||+.+| .+++.+||..|++ ++++.|++|++..+... +|-...+ . =+.|.+++++ +..++++...+
T Consensus 110 ~vi~l~~~-~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~-~-~~~id~~~~~---~~v~~~i~~~l 182 (183)
T PRK14531 110 AVVLLELD-DAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQRG-L-LQSVEAQGSI---EAITERIEKVL 182 (183)
T ss_pred eEEEEECC-HHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-C-EEEEECCCCH---HHHHHHHHHHh
Confidence 46777875 8999999988765 57888999998775432 2222111 1 1455666678 88888877654
No 45
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.73 E-value=0.42 Score=37.38 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=17.8
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCC
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTE 91 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgte 91 (166)
++||+..| .+++.+|+..|+..
T Consensus 130 ~~i~l~~~-~~~~~~R~~~r~~~ 151 (195)
T TIGR00041 130 LTIYLDID-PEVALERLRKRGEL 151 (195)
T ss_pred EEEEEeCC-HHHHHHHHHhcCCc
Confidence 67888875 88999999988753
No 46
>KOG3812|consensus
Probab=94.48 E-value=0.086 Score=48.16 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=55.2
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhhh
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKSS 145 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~~ 145 (166)
-|++|||+..|..+|.+-|+.||+-.-..+...|-.+...-++. +. .||.++.-+ .| ++|++.|.+++++.-
T Consensus 284 aPI~v~ikvSspKvLqrLirsrGksq~K~lnvq~va~~klaQc~--~e-~FdvildEN-qL---edAcehla~yLEaYw 355 (475)
T KOG3812|consen 284 APIIVYIKVSSPKVLQRLIRSRGKSQSKHLNVQMVAADKLAQCP--PE-GFDVILDEN-QL---EDACEHLAEYLEAYW 355 (475)
T ss_pred cceEEEEEeCCHHHHHHHHHhcCchhhhhchHhhhhcchhhhCC--hh-hhheeeccc-cH---HHHHHHHHHHHHHHH
Confidence 69999999999999999899999744444555555554333332 22 899999888 89 999999999998764
No 47
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.40 E-value=0.17 Score=40.55 Aligned_cols=70 Identities=20% Similarity=0.079 Sum_probs=37.0
Q ss_pred EEEEEeCCCHHHHHHHhhcCC----CCCHHHHHHHHHHHHHH--hhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRG----TETEDSLRRRLDLARRD--MSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rg----tetee~I~~Rl~~A~~e--~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~ 142 (166)
..|||.+|....+ +|+..|. ..+++++..+....... ..+-...-...|++|.|+++- +.+++.+.+-+.
T Consensus 128 ~~I~v~~~~~~~~-~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~---~~~~~~l~~~i~ 203 (209)
T PRK05480 128 IKIFVDTPLDIRL-IRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKN---RVAIDILKAKIR 203 (209)
T ss_pred eeEEEeCChhHHH-HHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCCCcc---hHHHHHHHHHHH
Confidence 6799998844444 4443342 24777776666554221 111111112789999987533 444444444443
No 48
>KOG3220|consensus
Probab=94.39 E-value=0.38 Score=41.07 Aligned_cols=95 Identities=17% Similarity=0.044 Sum_probs=60.6
Q ss_pred HHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCCCCCHHHHH
Q psy18086 18 EAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLR 97 (166)
Q Consensus 18 ~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgtetee~I~ 97 (166)
.-++.--+.|++|+-.-=--.+-+. +. .+|.+..+ .+.--+||.+|..-|+++.+
T Consensus 101 ~~~l~G~r~ivlDiPLLFE~~~~~~---~~---------------------~tvvV~cd-~~~Ql~Rl~~Rd~lse~dAe 155 (225)
T KOG3220|consen 101 KLLLRGYRVIVLDIPLLFEAKLLKI---CH---------------------KTVVVTCD-EELQLERLVERDELSEEDAE 155 (225)
T ss_pred HHHhcCCeEEEEechHHHHHhHHhh---ee---------------------eEEEEEEC-cHHHHHHHHHhccccHHHHH
Confidence 3344455688888876432233333 32 33444444 45555689889877999999
Q ss_pred HHHHHHH-HHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhhh
Q psy18086 98 RRLDLAR-RDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKSS 145 (166)
Q Consensus 98 ~Rl~~A~-~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~~ 145 (166)
.|++.-- -+.... .-|++|.|.+++ +...+++..+.....
T Consensus 156 ~Rl~sQmp~~~k~~-----~a~~Vi~Nng~~---~~l~~qv~~v~~~~~ 196 (225)
T KOG3220|consen 156 NRLQSQMPLEKKCE-----LADVVIDNNGSL---EDLYEQVEKVLALLQ 196 (225)
T ss_pred HHHHhcCCHHHHHH-----hhheeecCCCCh---HHHHHHHHHHHHHhc
Confidence 9987421 011111 458999999999 999999988876543
No 49
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.59 E-value=0.63 Score=38.82 Aligned_cols=73 Identities=22% Similarity=0.149 Sum_probs=47.5
Q ss_pred ceEEEEEeCCC-HHHHHHHhhc----CCCCCHHHHHHHHHHHHH-HhhcCCCCCCcccEEEEc-CCCCCCHhHHHHHHHH
Q psy18086 67 GAVYVFVKPPS-IEELETRLRG----RGTETEDSLRRRLDLARR-DMSYGKDSLRSYGIISEL-AFFLEYNSAAGEIFEH 139 (166)
Q Consensus 67 ~~~~IFI~PPS-~e~Le~RL~~----Rgtetee~I~~Rl~~A~~-e~~~~~~~~~~fD~vIvN-d~dl~~~e~a~~~l~~ 139 (166)
+|=+|+|.-.+ .+.|.+|++. |.-+|.++|++.++.++. -|.|+-..| .-=.||.| ++++ +.|..++..
T Consensus 109 ~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~g-atVkIV~n~~~~~---e~Aa~eiv~ 184 (189)
T COG2019 109 NPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYAILLG-ATVKIVENHEGDP---EEAAEEIVE 184 (189)
T ss_pred CCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEeCCCCCH---HHHHHHHHH
Confidence 34333333334 4567778765 344799999999998875 466655444 22345555 4688 999999998
Q ss_pred HHHh
Q psy18086 140 FGLK 143 (166)
Q Consensus 140 ii~~ 143 (166)
++..
T Consensus 185 ~l~~ 188 (189)
T COG2019 185 LLDR 188 (189)
T ss_pred HHhc
Confidence 8753
No 50
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=93.50 E-value=0.62 Score=37.83 Aligned_cols=100 Identities=22% Similarity=0.245 Sum_probs=56.7
Q ss_pred ccCcHHHHHHHHhcCCcEEEEe---CHHH-HHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHh
Q psy18086 10 YMVNRAAVEAVINSGKTCVLDI---EVQG-VQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRL 85 (166)
Q Consensus 10 YGTs~~~V~~v~~~Gk~~vldi---d~~G-v~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL 85 (166)
|-.-..+|....+.|..+|+|- +... ...+++. +.+ ..+.+|=|.+| .++|++|-
T Consensus 69 ~~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~---L~~-----------------~~vl~VgV~Cp-leil~~RE 127 (174)
T PF07931_consen 69 YAAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRL---LAG-----------------LPVLFVGVRCP-LEILERRE 127 (174)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHH---HTT-----------------S-EEEEEEE---HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHH---hCC-----------------CceEEEEEECC-HHHHHHHH
Confidence 4444678888899999999982 2222 2344454 221 15788888987 89999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcC-CCCCCHhHHHHHHHHHH
Q psy18086 86 RGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELA-FFLEYNSAAGEIFEHFG 141 (166)
Q Consensus 86 ~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ii 141 (166)
+.||..... .|+.....-+... .||+.|... ... ++|.+++.+.+
T Consensus 128 ~~RgDR~~G-------~a~~q~~~Vh~~~-~YDleVDTs~~sp---~ecA~~I~~~~ 173 (174)
T PF07931_consen 128 RARGDRPIG-------LAAWQAEHVHEGG-RYDLEVDTSATSP---EECAREILARL 173 (174)
T ss_dssp HHHTSSSTT-------HHHHHTTGGGTT----SEEEETTSS-H---HHHHHHHHTT-
T ss_pred HhcCCcchH-------HHHHHHhhcccCC-CCCEEEECCCCCH---HHHHHHHHHHh
Confidence 999843322 2322222234344 899998776 244 66766665543
No 51
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.39 E-value=0.56 Score=40.60 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=44.9
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCCC--------CHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCC-CCCCHhHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGTE--------TEDSLRRRLDLARRDMSYGKDSLRSYGIISELAF-FLEYNSAAGEIF 137 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgte--------tee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~-dl~~~e~a~~~l 137 (166)
..++|||..| .+++.+|+.+|+.. ..+.++.... .+. .+.+ .+|++|.|++ ++ +++.+++
T Consensus 227 ~~~~V~L~a~-~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~-~R~--~~y~----~ad~~I~t~~~s~---ee~~~~I 295 (309)
T PRK08154 227 HCYTVWLKAS-PEEHMARVRAQGDLRPMADNREAMEDLRRILA-SRE--PLYA----RADAVVDTSGLTV---AQSLARL 295 (309)
T ss_pred CCEEEEEECC-HHHHHHHHhcCCCCCCCCCCCChHHHHHHHHH-HHH--HHHH----hCCEEEECCCCCH---HHHHHHH
Confidence 4679999986 89999999877522 1245554432 222 2223 5799998884 67 8888888
Q ss_pred HHHHHhh
Q psy18086 138 EHFGLKS 144 (166)
Q Consensus 138 ~~ii~~~ 144 (166)
.+++...
T Consensus 296 ~~~l~~~ 302 (309)
T PRK08154 296 RELVRPA 302 (309)
T ss_pred HHHHHHH
Confidence 8887544
No 52
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.36 E-value=1.9 Score=35.62 Aligned_cols=107 Identities=10% Similarity=0.127 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCCCCCH-
Q psy18086 15 AAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETE- 93 (166)
Q Consensus 15 ~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgtete- 93 (166)
..++..++.|..+|+|-.. .....+.. + .+.+-+......+||+.+| .+++.+|...|+...+
T Consensus 59 ~~i~~~l~~~~~VI~D~~~-~~~~~r~~---l-----------~~~ak~~~~~~~~I~l~~p-~e~~~~Rn~~R~~~~~~ 122 (249)
T TIGR03574 59 YLIKTALKNKYSVIVDDTN-YYNSMRRD---L-----------INIAKEYNKNYIIIYLKAP-LDTLLRRNIERGEKIPN 122 (249)
T ss_pred HHHHHHHhCCCeEEEeccc-hHHHHHHH---H-----------HHHHHhCCCCEEEEEecCC-HHHHHHHHHhCCCCCCH
Confidence 4577778889888887532 22222211 0 0000001114567888876 8899999988875433
Q ss_pred HHHHHHHHHHHHH-hhc-CCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHH
Q psy18086 94 DSLRRRLDLARRD-MSY-GKDSLRSYGIISELAFFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 94 e~I~~Rl~~A~~e-~~~-~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~ 142 (166)
+.+......-+.. ..+ +. ..+++|..+.++ -.++.++.+.+++.
T Consensus 123 ~~i~~l~~r~e~p~~~~~wd----~~~~~vd~~~~~-~~~ei~~~i~~~~~ 168 (249)
T TIGR03574 123 EVIKDMYEKFDEPGTKYSWD----LPDLTIDTTKKI-DYNEILEEILEISE 168 (249)
T ss_pred HHHHHHHHhhCCCCCCCCcc----CceEEecCCCCC-CHHHHHHHHHHHhh
Confidence 3344433322111 111 22 456777655323 11577777776654
No 53
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.70 E-value=0.97 Score=34.95 Aligned_cols=67 Identities=16% Similarity=0.108 Sum_probs=43.1
Q ss_pred EEEEEeCCCHHHHHHHhhcCCC------CCHHHHHHHHHHHHHH----hhcCCCCCCcccEEEEcCCCCCCHhHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGT------ETEDSLRRRLDLARRD----MSYGKDSLRSYGIISELAFFLEYNSAAGEIFE 138 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgt------etee~I~~Rl~~A~~e----~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~ 138 (166)
++|++..| .+++.+|+.+|+. ++.+.+++|+...... +++-..++ . =++|.+++++ ++.++++.
T Consensus 106 ~~i~l~~~-~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~-~-~~~Id~~~~~---~~v~~~i~ 179 (183)
T TIGR01359 106 FVLFFDCP-EEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG-K-VKEINAEGSV---EEVFEDVE 179 (183)
T ss_pred EEEEEECC-HHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC-C-EEEEECCCCH---HHHHHHHH
Confidence 56777775 7889999998864 3678899999866443 22222111 1 1456666677 77777777
Q ss_pred HHH
Q psy18086 139 HFG 141 (166)
Q Consensus 139 ~ii 141 (166)
+++
T Consensus 180 ~~l 182 (183)
T TIGR01359 180 KIF 182 (183)
T ss_pred HHh
Confidence 654
No 54
>PRK13975 thymidylate kinase; Provisional
Probab=92.60 E-value=4 Score=31.83 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=39.1
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCC--CHHHHHHHHHHHHHHhhcC--CCCCCcccEEEEcC--CCCCCHhHHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTE--TEDSLRRRLDLARRDMSYG--KDSLRSYGIISELA--FFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgte--tee~I~~Rl~~A~~e~~~~--~~~~~~fD~vIvNd--~dl~~~e~a~~~l~~ii~ 142 (166)
++||+.+ |.+++.+|+.+|+++ ...+...++...-.++... ..+ .+.++++|. .+. ++.++++.+.+.
T Consensus 116 ~vi~L~~-~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~Id~~~~~~---eev~~~I~~~i~ 189 (196)
T PRK13975 116 LVFLLDV-DIEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNEKFMP--KYGFIVIDTTNKSI---EEVFNEILNKIK 189 (196)
T ss_pred EEEEEcC-CHHHHHHHHhccCccccchHHHHHHHHHHHHHHHhhcccCC--cCCEEEEECCCCCH---HHHHHHHHHHHH
Confidence 5677776 589999999988743 2234444444332332211 111 234455554 366 788888877765
Q ss_pred h
Q psy18086 143 K 143 (166)
Q Consensus 143 ~ 143 (166)
.
T Consensus 190 ~ 190 (196)
T PRK13975 190 D 190 (196)
T ss_pred H
Confidence 4
No 55
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.51 E-value=3.5 Score=30.97 Aligned_cols=66 Identities=20% Similarity=0.114 Sum_probs=40.0
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCC---C---C-HHHHHHHHHHHHHHhhcCCCCCCcccEEEEcC-CCCCCHhHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGT---E---T-EDSLRRRLDLARRDMSYGKDSLRSYGIISELA-FFLEYNSAAGEIFE 138 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgt---e---t-ee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~ 138 (166)
..+.||+.+| .+.+.+|+..|.. . . .+.+......- .-.|.. .+|++|..+ .++ +++.+.+.
T Consensus 97 ~~~~v~l~~~-~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~----~~dl~idt~~~~~---~e~~~~I~ 166 (175)
T PRK00131 97 RGTVVYLDAS-FEELLRRLRRDRNRPLLQTNDPKEKLRDLYEER--DPLYEE----VADITVETDGRSP---EEVVNEIL 166 (175)
T ss_pred CCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHH--HHHHHh----hcCeEEeCCCCCH---HHHHHHHH
Confidence 3578999886 8889999987543 1 1 12222222211 112333 689888754 466 78888888
Q ss_pred HHHH
Q psy18086 139 HFGL 142 (166)
Q Consensus 139 ~ii~ 142 (166)
+.+.
T Consensus 167 ~~v~ 170 (175)
T PRK00131 167 EKLE 170 (175)
T ss_pred HHHH
Confidence 8775
No 56
>PRK05541 adenylylsulfate kinase; Provisional
Probab=91.60 E-value=0.47 Score=36.87 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=34.4
Q ss_pred eEEEEEeCCCHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHH
Q psy18086 68 AVYVFVKPPSIEELETRLRGRG--TETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFG 141 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~Rg--tetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii 141 (166)
.++||+.+| .+++.+|+..+. ..+.++++.++. ..+ ..... ..|++|.|+ ++.-.+++++++.+.+
T Consensus 103 ~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~~~~~~~---~~~--~~~~~-~Ad~vI~~~-~~~~~~~~v~~i~~~l 170 (176)
T PRK05541 103 YFEVYLKCD-MEELIRRDQKGLYTKALKGEIKNVVG---VDI--PFDEP-KADLVIDNS-CRTSLDEKVDLILNKL 170 (176)
T ss_pred eEEEEEeCC-HHHHHHhchhhHHHHHHcCccccccc---CCC--cccCC-CCCEEEeCC-CCCCHHHHHHHHHHHH
Confidence 367888875 889999976321 011122222221 111 11111 469999998 3311266666666555
No 57
>PRK08233 hypothetical protein; Provisional
Probab=90.36 E-value=3.1 Score=31.78 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=40.6
Q ss_pred EEEEEeCCCHHHHHHHhhcCCC--CCHHHHHHHHHHH----HH-HhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGT--ETEDSLRRRLDLA----RR-DMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFG 141 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgt--etee~I~~Rl~~A----~~-e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii 141 (166)
.+||+.+| .+++.+|+.+|.. .+.+++..++..- +. ..++.+......+++|.++.++ ++..+++.+++
T Consensus 100 ~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~---e~i~~~i~~~l 175 (182)
T PRK08233 100 VTIFIDTP-LDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSV---EEIINQIEEEL 175 (182)
T ss_pred EEEEEcCC-HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCH---HHHHHHHHHHH
Confidence 78999987 6776666555531 2333343333322 11 1121111111457888777677 88888888887
Q ss_pred Hhh
Q psy18086 142 LKS 144 (166)
Q Consensus 142 ~~~ 144 (166)
...
T Consensus 176 ~~~ 178 (182)
T PRK08233 176 YRR 178 (182)
T ss_pred HhC
Confidence 654
No 58
>PRK02496 adk adenylate kinase; Provisional
Probab=90.22 E-value=2.2 Score=33.27 Aligned_cols=67 Identities=24% Similarity=0.271 Sum_probs=43.5
Q ss_pred EEEEEeCCCHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHh----hcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGT--ETEDSLRRRLDLARRDM----SYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFG 141 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgt--etee~I~~Rl~~A~~e~----~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii 141 (166)
.+||+.+| .+++.+|+..|++ ++++.+++|++..+... ++.+..+ . =+.|..++++ +..++++.+.+
T Consensus 110 ~vi~l~~~-~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~-~-~~~Ida~~~~---~~V~~~i~~~l 182 (184)
T PRK02496 110 RVVNLDVP-DDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQ-K-LLTIDGNQSV---EAVTTELKAAL 182 (184)
T ss_pred EEEEEeCC-HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-C-EEEEECCCCH---HHHHHHHHHHh
Confidence 56777765 8899999998875 46788999998775522 2222111 1 1344545577 77777777665
No 59
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=89.91 E-value=1.8 Score=31.79 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCcEEEEeCH---HHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCCC
Q psy18086 14 RAAVEAVINSGKTCVLDIEV---QGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 90 (166)
Q Consensus 14 ~~~V~~v~~~Gk~~vldid~---~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgt 90 (166)
.+.++..+..|..+|+|-.. .....+.+. . ++. .....+|++.+| .+++.+|+..|+.
T Consensus 60 ~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~---~------------~~~---~~~~~~v~l~~~-~~~~~~R~~~R~~ 120 (143)
T PF13671_consen 60 NAAIRKALRNGNSVVVDNTNLSREERARLREL---A------------RKH---GYPVRVVYLDAP-EETLRERLAQRNR 120 (143)
T ss_dssp HHHHHHHHHTT-EEEEESS--SHHHHHHHHHH---H------------HHC---TEEEEEEEECHH-HHHHHHHHHTTHC
T ss_pred HHHHHHHHHcCCCceeccCcCCHHHHHHHHHH---H------------HHc---CCeEEEEEEECC-HHHHHHHHHhcCC
Confidence 45677788999999998322 222222222 1 000 014677888875 8999999999876
Q ss_pred CC
Q psy18086 91 ET 92 (166)
Q Consensus 91 et 92 (166)
..
T Consensus 121 ~~ 122 (143)
T PF13671_consen 121 EG 122 (143)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 60
>PLN02200 adenylate kinase family protein
Probab=89.72 E-value=3 Score=34.89 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=49.1
Q ss_pred EEEEEeCCCHHHHHHHhhcCC----CCCHHHHHHHHHHHHHH----hhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRG----TETEDSLRRRLDLARRD----MSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHF 140 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rg----tetee~I~~Rl~~A~~e----~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~i 140 (166)
++||+..| .+++.+|+.+|+ .++++.+++|++..... +++....+ . =+.|.+++++ ++.++.+.++
T Consensus 148 ~vi~Ld~~-~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~-~-~~~IDa~~~~---eeV~~~v~~~ 221 (234)
T PLN02200 148 VVLFFDCP-EEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKG-K-LYTINAVGTV---DEIFEQVRPI 221 (234)
T ss_pred EEEEEECC-HHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-C-EEEEECCCCH---HHHHHHHHHH
Confidence 56777765 688889998874 24678889999866543 22222111 1 1345555688 9999999998
Q ss_pred HHhhhhhhh
Q psy18086 141 GLKSSEIQS 149 (166)
Q Consensus 141 i~~~~~~~~ 149 (166)
+.....+.+
T Consensus 222 l~~~~~~~~ 230 (234)
T PLN02200 222 FAACEAMKE 230 (234)
T ss_pred HHHcCCccc
Confidence 877665544
No 61
>PRK06696 uridine kinase; Validated
Probab=89.72 E-value=1.5 Score=35.81 Aligned_cols=58 Identities=14% Similarity=0.089 Sum_probs=32.5
Q ss_pred eEEEEEeCCCHHHHHHHhhcCC-----C--CCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCC
Q psy18086 68 AVYVFVKPPSIEELETRLRGRG-----T--ETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFL 127 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~Rg-----t--etee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl 127 (166)
...|||.+| .++..+|+..|. . +.......|...+.........|-...|++|.|+ +.
T Consensus 148 d~~i~v~~~-~e~~~~R~~~Rd~~~~g~~~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~-~~ 212 (223)
T PRK06696 148 DYKIFLDTD-FEVSRRRGAKRDTEAFGSYEEAEKMYLARYHPAQKLYIAEANPKERADVVIDNS-DP 212 (223)
T ss_pred CEEEEEECC-HHHHHHHHHHhhhhhhCCchHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECC-CC
Confidence 478999997 688888887663 2 1122233343333221111111222689999999 65
No 62
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=89.72 E-value=2.3 Score=36.99 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=36.8
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCC--C---CCHHHHHHHHHHHHHHhh-cCCCCCCcccEEEEcCC-CCCCHhHHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRG--T---ETEDSLRRRLDLARRDMS-YGKDSLRSYGIISELAF-FLEYNSAAGEIFEH 139 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rg--t---etee~I~~Rl~~A~~e~~-~~~~~~~~fD~vIvNd~-dl~~~e~a~~~l~~ 139 (166)
...+||+..| .++|.+|+..+. + .+ .++.+.+..-+..+. +.. ..|++|.+++ ++ ++..+++.+
T Consensus 86 ~~~iI~L~a~-~e~L~~Rl~~~rr~RPLl~~-~~l~e~I~~eR~~l~pl~~----~ADivIDTs~ls~---~el~e~I~~ 156 (288)
T PRK05416 86 DVRVLFLDAS-DEVLIRRYSETRRRHPLSGD-GSLLEGIELERELLAPLRE----RADLVIDTSELSV---HQLRERIRE 156 (288)
T ss_pred cEEEEEEECC-HHHHHHHHhhcccCCCccCC-ccHHHHHHHHHhhhhhHHH----hCCEEEECCCCCH---HHHHHHHHH
Confidence 4577999985 899999996421 1 11 222222332222221 222 4689998872 34 556666666
Q ss_pred HH
Q psy18086 140 FG 141 (166)
Q Consensus 140 ii 141 (166)
.+
T Consensus 157 ~l 158 (288)
T PRK05416 157 RF 158 (288)
T ss_pred HH
Confidence 55
No 63
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=88.94 E-value=1.2 Score=36.45 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=37.8
Q ss_pred EEEEEeCCCHHHHHHHhhcCC---CCCHHHHHHHHHHHHH---H-h-hcCCCCCCcccEEEEcCCCC
Q psy18086 69 VYVFVKPPSIEELETRLRGRG---TETEDSLRRRLDLARR---D-M-SYGKDSLRSYGIISELAFFL 127 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rg---tetee~I~~Rl~~A~~---e-~-~~~~~~~~~fD~vIvNd~dl 127 (166)
.+|||.+| .++..+|+..|. .-|++++..|+..... + . ...+ ..|+||.|++.-
T Consensus 163 ~vi~v~~~-~~~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~----~ad~vI~n~~~~ 224 (229)
T PRK09270 163 FTIFLDAP-AEVLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSR----PADLVLEMTATG 224 (229)
T ss_pred EEEEEECC-HHHHHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCC----CCCEEEEecCCc
Confidence 78999987 788888888772 2488889988874311 1 1 2233 779999998554
No 64
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=88.89 E-value=4.5 Score=33.84 Aligned_cols=66 Identities=29% Similarity=0.286 Sum_probs=40.8
Q ss_pred HHHHHHhcCCcEEEEeCHHH---HHHHHH---hhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCC
Q psy18086 16 AVEAVINSGKTCVLDIEVQG---VQQVKR---AGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRG 89 (166)
Q Consensus 16 ~V~~v~~~Gk~~vldid~~G---v~~lk~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rg 89 (166)
.+...+..|..+|+|-.... ...+.. ..+. ...+|++.+ +.+++.+|+..|+
T Consensus 67 ~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~~---------------------~~~~v~l~~-~~e~~~~R~~~R~ 124 (300)
T PHA02530 67 AALAALKSGKSVIISDTNLNPERRRKWKELAKELGA---------------------EFEEKVFDV-PVEELVKRNRKRG 124 (300)
T ss_pred HHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcCC---------------------eEEEEEeCC-CHHHHHHHHHccC
Confidence 34556688999999854322 222221 1111 455688877 5999999999995
Q ss_pred C--CCHHHHHHHHHHH
Q psy18086 90 T--ETEDSLRRRLDLA 103 (166)
Q Consensus 90 t--etee~I~~Rl~~A 103 (166)
. .+++.|+.+.++-
T Consensus 125 ~~~~~~~~i~~~~~~~ 140 (300)
T PHA02530 125 ERAVPEDVLRSMFKQM 140 (300)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 3 3577777444443
No 65
>PRK14532 adenylate kinase; Provisional
Probab=87.71 E-value=8.2 Score=30.08 Aligned_cols=66 Identities=17% Similarity=0.066 Sum_probs=42.9
Q ss_pred EEEEEeCCCHHHHHHHhhcCC------CCCHHHHHHHHHHHHHHh----h-cCCCCCCcccEEEEcC-CCCCCHhHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRG------TETEDSLRRRLDLARRDM----S-YGKDSLRSYGIISELA-FFLEYNSAAGEI 136 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rg------tetee~I~~Rl~~A~~e~----~-~~~~~~~~fD~vIvNd-~dl~~~e~a~~~ 136 (166)
++|++..| .+++.+|+.+|. .++++.+.+|+.....+. . |.+ .+ -++.++. .++ ++.+++
T Consensus 109 ~vi~L~v~-~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~-~~---~~~~id~~~~~---eev~~~ 180 (188)
T PRK14532 109 VVIRLKVD-DEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAG-QG---KLTEVDGMGSI---EAVAAS 180 (188)
T ss_pred EEEEEECC-HHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cC---CEEEEECCCCH---HHHHHH
Confidence 56777776 788999998774 246778899998765433 2 222 11 1344443 477 888888
Q ss_pred HHHHHH
Q psy18086 137 FEHFGL 142 (166)
Q Consensus 137 l~~ii~ 142 (166)
+.+.+.
T Consensus 181 I~~~l~ 186 (188)
T PRK14532 181 IDAALE 186 (188)
T ss_pred HHHHHh
Confidence 887774
No 66
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=87.33 E-value=5.2 Score=30.63 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=38.9
Q ss_pred eEEEEEeCCCHHHHHHHhhcCCC----------CCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHH
Q psy18086 68 AVYVFVKPPSIEELETRLRGRGT----------ETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIF 137 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~Rgt----------etee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l 137 (166)
.++||+..| .+++.+|+..|.. +-.+++...+..- .-.|.. ..+++|.++... ++..+++
T Consensus 95 ~~~v~l~~~-~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r--~~~y~~----~a~~~Id~~~~~---e~v~~~i 164 (171)
T PRK03731 95 GIVIYLCAP-VSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAER--EALYRE----VAHHIIDATQPP---SQVVSEI 164 (171)
T ss_pred CEEEEEECC-HHHHHHHHccccccccCCcCCCCChHHHHHHHHHHH--HHHHHH----hCCEEEcCCCCH---HHHHHHH
Confidence 468888886 8899999987631 1123333333321 112222 335777666566 7888888
Q ss_pred HHHHHh
Q psy18086 138 EHFGLK 143 (166)
Q Consensus 138 ~~ii~~ 143 (166)
.+.+.+
T Consensus 165 ~~~l~~ 170 (171)
T PRK03731 165 LSALAQ 170 (171)
T ss_pred HHHHhc
Confidence 777653
No 67
>PRK14526 adenylate kinase; Provisional
Probab=87.31 E-value=6 Score=32.64 Aligned_cols=69 Identities=17% Similarity=0.089 Sum_probs=44.4
Q ss_pred eEEEEEeCCCHHHHHHHhhcCC---------------------------------CCCHHHHHHHHHHHHHHh----hcC
Q psy18086 68 AVYVFVKPPSIEELETRLRGRG---------------------------------TETEDSLRRRLDLARRDM----SYG 110 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~Rg---------------------------------tetee~I~~Rl~~A~~e~----~~~ 110 (166)
..+|++..| .+++.+||.+|. .++++.|++||+....+. +|-
T Consensus 103 ~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y 181 (211)
T PRK14526 103 IKIINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFY 181 (211)
T ss_pred CEEEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 345555554 688888887653 357999999999886543 332
Q ss_pred CCCCCcccEEEEc-CCCCCCHhHHHHHHHHHHHh
Q psy18086 111 KDSLRSYGIISEL-AFFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 111 ~~~~~~fD~vIvN-d~dl~~~e~a~~~l~~ii~~ 143 (166)
...+ . ++.+| +.++ ++.++++.+++.+
T Consensus 182 ~~~~-~--~~~id~~~~~---~~V~~~i~~~l~~ 209 (211)
T PRK14526 182 SKCN-R--LNNIDASKDI---DEVKKKLIEIISK 209 (211)
T ss_pred HhcC-C--EEEEECCCCH---HHHHHHHHHHHcc
Confidence 2112 1 23334 3477 8888888888764
No 68
>PRK14527 adenylate kinase; Provisional
Probab=87.28 E-value=5.7 Score=31.36 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=42.0
Q ss_pred EEEEEeCCCHHHHHHHhhcCC------CCCHHHHHHHHHHHHHHhh----cCCCCCCcccEEEEcC-CCCCCHhHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRG------TETEDSLRRRLDLARRDMS----YGKDSLRSYGIISELA-FFLEYNSAAGEIF 137 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rg------tetee~I~~Rl~~A~~e~~----~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l 137 (166)
.+||+..| .+++.+||.+|+ .++++.+++|+........ |-...+ . ++.+|. +++ ++.++++
T Consensus 114 ~vi~l~~~-~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~-~--~~~id~~~~~---~~v~~~i 186 (191)
T PRK14527 114 AVVLLEVP-DEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARG-H--LKRVDGLGTP---DEVYARI 186 (191)
T ss_pred EEEEEECC-HHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcC-C--EEEEECCCCH---HHHHHHH
Confidence 35677665 789999998875 2468889999988765443 212112 1 333443 467 7777777
Q ss_pred HHHH
Q psy18086 138 EHFG 141 (166)
Q Consensus 138 ~~ii 141 (166)
...+
T Consensus 187 ~~~l 190 (191)
T PRK14527 187 LKAL 190 (191)
T ss_pred HHhh
Confidence 6654
No 69
>PRK13808 adenylate kinase; Provisional
Probab=87.25 E-value=4.8 Score=36.03 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=44.8
Q ss_pred EEEEEeCCCHHHHHHHhhcC------------CCCCHHHHHHHHHHHHHH----hhcCCCCCCcccEEEEc-CCCCCCHh
Q psy18086 69 VYVFVKPPSIEELETRLRGR------------GTETEDSLRRRLDLARRD----MSYGKDSLRSYGIISEL-AFFLEYNS 131 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~R------------gtetee~I~~Rl~~A~~e----~~~~~~~~~~fD~vIvN-d~dl~~~e 131 (166)
++||+..| .+++.+|+..| ..++++.+++||...+.. ++|-...+ -++.+| +.++ +
T Consensus 109 lVI~LDVp-~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~---~lv~IDa~~si---E 181 (333)
T PRK13808 109 AVVELRVN-EGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKR---KLLTVDGMMTI---D 181 (333)
T ss_pred eEEEEECC-HHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccC---cEEEEECCCCH---H
Confidence 45666654 68888898775 234788899999765544 33322111 133444 4467 8
Q ss_pred HHHHHHHHHHHhhh
Q psy18086 132 AAGEIFEHFGLKSS 145 (166)
Q Consensus 132 ~a~~~l~~ii~~~~ 145 (166)
+.+++|..+|....
T Consensus 182 EV~eeI~~~L~~~~ 195 (333)
T PRK13808 182 EVTREIGRVLAAVG 195 (333)
T ss_pred HHHHHHHHHHHHHh
Confidence 88899998887654
No 70
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=86.97 E-value=1.5 Score=34.88 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=34.4
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHH----hh--c---CCCCCCcccEEEEcC
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRD----MS--Y---GKDSLRSYGIISELA 124 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e----~~--~---~~~~~~~fD~vIvNd 124 (166)
+++-|||..| .+.=.+|+.+|..-++++..+.+..-... .. + +.++. .||.+|..+
T Consensus 114 ~~l~V~i~A~-~~~Rv~ri~~~~~~s~~~A~~~i~~~D~~R~~~~~~~~~~~~~d~~-~YDLvint~ 178 (179)
T PF13189_consen 114 NVLHVFIYAP-LEFRVERIMEREGISEEEAEKLIKKEDKRRRAYYKYYTGIDWGDPS-NYDLVINTS 178 (179)
T ss_dssp TEEEEEEEE--HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHH-SS-TTBGG-G-SEEEEES
T ss_pred CeEEEEEECC-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCch-hceEEEeCc
Confidence 7899999986 77767788777556777777776654332 11 1 22344 789888764
No 71
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=86.70 E-value=7.8 Score=36.51 Aligned_cols=103 Identities=18% Similarity=0.146 Sum_probs=61.3
Q ss_pred HHHHHHhcCCcEEEE---eCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCCCCC
Q psy18086 16 AVEAVINSGKTCVLD---IEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTET 92 (166)
Q Consensus 16 ~V~~v~~~Gk~~vld---id~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgtet 92 (166)
-|+..+..|..+|+| +.+.-+...... + ...+.++|..+|.++.++|+..|++.+
T Consensus 351 vI~r~l~eG~SvIIEGVHl~P~~i~~~~~~-~---------------------~~~i~flv~isdeeeH~~Rf~~Ra~~~ 408 (475)
T PRK12337 351 IQERSAQEGTSLVLEGVHLVPGYLRHPYQA-G---------------------ALVVPMLVTLPDEALHRRRFELRDRET 408 (475)
T ss_pred HHHHHHHcCCeEEEECCCCCHHHHHHHHhc-C---------------------CceEEEEEEECCHHHHHHHHHHHhhhc
Confidence 356678899999986 344332211111 1 156777888889999999998887655
Q ss_pred H-----HHHHHHHHHHHH----HhhcCCCCCCcccE-EEEcCCCCCCHhHHHHHHHHHHHhhhhhh
Q psy18086 93 E-----DSLRRRLDLARR----DMSYGKDSLRSYGI-ISELAFFLEYNSAAGEIFEHFGLKSSEIQ 148 (166)
Q Consensus 93 e-----e~I~~Rl~~A~~----e~~~~~~~~~~fD~-vIvNd~dl~~~e~a~~~l~~ii~~~~~~~ 148 (166)
- +.--+-+..-+. -+..++ .++. +|.|. ++ +.+.+.+.+.+......+
T Consensus 409 ~~~r~~~ky~~~f~~IR~IQdyLv~~A~----~~~ipvI~n~-ni---d~tv~~~l~~i~~~~~~~ 466 (475)
T PRK12337 409 GASRPRERYLRHFEEIRLIQDHLLRLAR----QEGVPVLPGE-DL---DESIDKALEVVLRRVMAA 466 (475)
T ss_pred cCCCchhHHHHhHHHHHHHHHHHHHHHH----HcCCCeecCc-cH---HHHHHHHHHHHHHHHHHh
Confidence 1 111111111111 112233 3342 56777 99 999999999887665443
No 72
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=86.34 E-value=5.6 Score=31.89 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=40.0
Q ss_pred EEEEEeCCCHHHHHHHhhc----CCCCCHHHHHHHHHHH-HHHh-hcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRG----RGTETEDSLRRRLDLA-RRDM-SYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~----Rgtetee~I~~Rl~~A-~~e~-~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~ 142 (166)
.+|||.+|....+.+|+.. || .+.+++..+.... +... .+-...-..+|.||.|+.+. +.+++-+..-+.
T Consensus 128 ~~I~v~~~~~~~l~R~~~R~~~~rg-~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~---~~~~~~~~~~~~ 203 (207)
T TIGR00235 128 LKIFVDTPLDIRLIRRIERDINERG-RSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGRN---EVAINVLDTKIK 203 (207)
T ss_pred EEEEEECChhHHHHHHHHHHHHhhC-CCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCCCCc---hHHHHHHHHHHH
Confidence 6799999855545554433 45 3455444443322 1111 22111112789999988677 888887666554
Q ss_pred h
Q psy18086 143 K 143 (166)
Q Consensus 143 ~ 143 (166)
.
T Consensus 204 ~ 204 (207)
T TIGR00235 204 H 204 (207)
T ss_pred H
Confidence 3
No 73
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=86.15 E-value=3.7 Score=36.45 Aligned_cols=68 Identities=13% Similarity=0.001 Sum_probs=45.4
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCCCC------------HHHHHHHHHHHHHHhhcCCCCCCccc-EEEEcCCCCCCHhHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGTET------------EDSLRRRLDLARRDMSYGKDSLRSYG-IISELAFFLEYNSAA 133 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgtet------------ee~I~~Rl~~A~~e~~~~~~~~~~fD-~vIvNd~dl~~~e~a 133 (166)
+.+..++..+|.+..+.|+-+|.++| -++|....+.. +..++ .++ =+|.|+ |+ ++|
T Consensus 209 n~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~~Ryl~yf~EiR~I~Dyl---~~~Ar----e~gVPvI~n~-di---~et 277 (299)
T COG2074 209 NVFMFMLYIADEELHRERFYDRIRYTHASRPGGRYLEYFKEIRTIHDYL---VERAR----EHGVPVIEND-DI---DET 277 (299)
T ss_pred ceEEEEEEeCCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH---HHHHH----hcCCCeeccc-cH---HHH
Confidence 46667777789999999999887665 12222222221 12233 445 378888 99 999
Q ss_pred HHHHHHHHHhhh
Q psy18086 134 GEIFEHFGLKSS 145 (166)
Q Consensus 134 ~~~l~~ii~~~~ 145 (166)
..++.+.+.+..
T Consensus 278 v~~il~~i~~~~ 289 (299)
T COG2074 278 VDRILEDIRKRT 289 (299)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 74
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=85.49 E-value=7 Score=30.09 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=34.9
Q ss_pred eEEEEEeCCCHHHHHHHhhcCCC----CCHH---HHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHH
Q psy18086 68 AVYVFVKPPSIEELETRLRGRGT----ETED---SLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHF 140 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~Rgt----etee---~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~i 140 (166)
..+|||..| .+++.+||..+.. .... ++...+. +++-.|.. .-|+++..+ .. -.++..+++.+.
T Consensus 86 g~vI~L~~~-~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~--~R~~~Y~~----~a~~~v~~~-~~-~~~~i~~~i~~~ 156 (158)
T PF01202_consen 86 GLVIYLDAD-PEELAERLRARDNRPLLKGKMEHEEILELLF--EREPLYEQ----AADIVVDTD-GS-PPEEIAEEILEF 156 (158)
T ss_dssp SEEEEEE---HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH--HHHHHHHH----HSSEEEETS-SC-HHHHHHHHHHHH
T ss_pred CEEEEEeCC-HHHHHHHHhCCCCCCCCCCCChHHHHHHHHH--HHHHHHHh----cCeEEEeCC-CC-CHHHHHHHHHHH
Confidence 468999874 9999999987654 1222 2222222 33444443 446676666 44 014555655554
Q ss_pred H
Q psy18086 141 G 141 (166)
Q Consensus 141 i 141 (166)
|
T Consensus 157 l 157 (158)
T PF01202_consen 157 L 157 (158)
T ss_dssp H
T ss_pred h
Confidence 4
No 75
>PRK07667 uridine kinase; Provisional
Probab=85.19 E-value=5.8 Score=31.69 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=34.8
Q ss_pred eEEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEE
Q psy18086 68 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIIS 121 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vI 121 (166)
-..|||.+| .++..+|+.+|..++.++...|-..|+...-....|-...|++|
T Consensus 140 d~~v~V~~~-~~~~~~R~~~r~~~~~~~~~~r~~~a~~~y~~~~~~~~~ad~i~ 192 (193)
T PRK07667 140 HYMVYLDCP-RETRFLRESEETQKNLSKFKNRYWKAEDYYLETESPKDRADLVI 192 (193)
T ss_pred eEEEEEECC-HHHHHHHHhcccHhHHHHHHHHhHHHHHHHHhhcChHhhCcEEe
Confidence 478999987 77888888888667888888887766432211111222567665
No 76
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=85.18 E-value=13 Score=29.79 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=43.0
Q ss_pred EEEEEeCCCHHHHHHHhhcCC---------------------------------CCCHHHHHHHHHHHHHHh----hcCC
Q psy18086 69 VYVFVKPPSIEELETRLRGRG---------------------------------TETEDSLRRRLDLARRDM----SYGK 111 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rg---------------------------------tetee~I~~Rl~~A~~e~----~~~~ 111 (166)
.+|++..| .+++.+|+.+|. .++++.|++||....... +|-+
T Consensus 106 ~vi~L~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~ 184 (210)
T TIGR01351 106 AVIELDVP-DEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYK 184 (210)
T ss_pred EEEEEECC-HHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHH
Confidence 56777776 688888887763 257889999999876543 2322
Q ss_pred CCCCcccEEEEcC-CCCCCHhHHHHHHHHHH
Q psy18086 112 DSLRSYGIISELA-FFLEYNSAAGEIFEHFG 141 (166)
Q Consensus 112 ~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ii 141 (166)
..+ -++.+|. +++ ++.++.+.+++
T Consensus 185 ~~~---~~~~id~~~~~---~~v~~~i~~~l 209 (210)
T TIGR01351 185 KRG---ILVQIDGNGPI---DEVWKRILEAL 209 (210)
T ss_pred hCC---CEEEEECCCCH---HHHHHHHHHhh
Confidence 111 2344454 477 78888777765
No 77
>PRK00279 adk adenylate kinase; Reviewed
Probab=84.49 E-value=5.1 Score=32.32 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=44.5
Q ss_pred EEEEEeCCCHHHHHHHhhcCC---------------------------------CCCHHHHHHHHHHHHHHh----hcCC
Q psy18086 69 VYVFVKPPSIEELETRLRGRG---------------------------------TETEDSLRRRLDLARRDM----SYGK 111 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rg---------------------------------tetee~I~~Rl~~A~~e~----~~~~ 111 (166)
++|++..| .+++.+|+..|. .++++.|++||...+... +|-+
T Consensus 109 ~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~ 187 (215)
T PRK00279 109 AVIEIDVP-DEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYK 187 (215)
T ss_pred EEEEEECC-HHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHH
Confidence 57778876 678888888763 367899999998876532 2322
Q ss_pred CCCCcccEEEEc-CCCCCCHhHHHHHHHHHHHh
Q psy18086 112 DSLRSYGIISEL-AFFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 112 ~~~~~fD~vIvN-d~dl~~~e~a~~~l~~ii~~ 143 (166)
..+ . ++-+| +.+. ++.++++..++.+
T Consensus 188 ~~~-~--~~~id~~~~~---~~v~~~i~~~l~~ 214 (215)
T PRK00279 188 KKG-K--LKKIDGTGSI---DEVFADILKALGK 214 (215)
T ss_pred hCC-C--EEEEECCCCH---HHHHHHHHHHHhc
Confidence 111 1 33344 3567 8888888777653
No 78
>PRK13947 shikimate kinase; Provisional
Probab=84.23 E-value=16 Score=27.74 Aligned_cols=63 Identities=10% Similarity=0.092 Sum_probs=35.2
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHh-hcCCCCCCcccEEEEcC-CCCCCHhHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTE---TEDSLRRRLDLARRDM-SYGKDSLRSYGIISELA-FFLEYNSAAGEIFEH 139 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgte---tee~I~~Rl~~A~~e~-~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ 139 (166)
++||+..| .+.+.+|+..|+.. ...+...++...-.+. .+.. .+|++|..+ .++ +++.+++.+
T Consensus 96 ~vv~L~~~-~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~----~ad~~Idt~~~~~---~~i~~~I~~ 163 (171)
T PRK13947 96 VVICLKAR-PEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYD----FADYTIDTGDMTI---DEVAEEIIK 163 (171)
T ss_pred EEEEEECC-HHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHH----hcCEEEECCCCCH---HHHHHHHHH
Confidence 58999885 89999999876421 1122333332211111 1112 458777654 355 777777777
No 79
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=83.62 E-value=9.7 Score=31.00 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=37.1
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHH----HHHHHHHH-Hhh--cCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLR----RRLDLARR-DMS--YGKDSLRSYGIISELAFFLEYNSAAGEIFEHFG 141 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~----~Rl~~A~~-e~~--~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii 141 (166)
++||+.+| .+.+.+|+.+|+++.+..+. .++...-. .+. +.. ..+++++|. +. ....+.+.+-|
T Consensus 145 ~~i~l~~~-~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~----~~~~i~id~-~~---~~~~e~i~~~I 215 (219)
T cd02030 145 LVIYLDVP-VPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISE----HSEVLQYDW-TE---AGDTEKVVEDI 215 (219)
T ss_pred EEEEEeCC-HHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhcc----CCCEEEEeC-CC---hhhHHHHHHHH
Confidence 78888886 69999999999865333322 34443322 211 222 336666665 43 45555555544
Q ss_pred H
Q psy18086 142 L 142 (166)
Q Consensus 142 ~ 142 (166)
.
T Consensus 216 ~ 216 (219)
T cd02030 216 E 216 (219)
T ss_pred H
Confidence 3
No 80
>PRK14528 adenylate kinase; Provisional
Probab=82.33 E-value=9.1 Score=30.45 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=28.4
Q ss_pred EEEEEeCCCHHHHHHHhhcCC------CCCHHHHHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRG------TETEDSLRRRLDLARRD 106 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rg------tetee~I~~Rl~~A~~e 106 (166)
.+|++..| .+++.+||.+|. .++++.|.+||+.....
T Consensus 110 ~vI~Ld~~-~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~ 152 (186)
T PRK14528 110 KAINLEVP-DGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKK 152 (186)
T ss_pred EEEEEECC-HHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHH
Confidence 45667765 788999988763 36899999999987654
No 81
>PRK13973 thymidylate kinase; Provisional
Probab=81.97 E-value=26 Score=28.40 Aligned_cols=115 Identities=10% Similarity=0.093 Sum_probs=58.0
Q ss_pred HHHHHHhcCCcEEEEeCHHHHHHHHHh-hccCCccchhhchhhhh-h-ccCCCCceEEEEEeCCCHHHHHHHhhcCCCCC
Q psy18086 16 AVEAVINSGKTCVLDIEVQGVQQVKRA-GGAMAGAVYVFGVQQVK-R-AGGAMAGAVYVFVKPPSIEELETRLRGRGTET 92 (166)
Q Consensus 16 ~V~~v~~~Gk~~vldid~~Gv~~lk~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgtet 92 (166)
.|...+++|+++|+|==......+... .++ +. -. +..+. . .|+-.. -.+||+..| .+++.+|+.+|+..+
T Consensus 81 ~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~-~~-~~---~~~l~~~~~~~~~P-D~vi~Ldv~-~e~~~~Rl~~R~~~~ 153 (213)
T PRK13973 81 VIRPALARGKIVLCDRFIDSTRAYQGVTGNV-DP-AL---LAALERVAINGVMP-DLTLILDIP-AEVGLERAAKRRGSD 153 (213)
T ss_pred HHHHHHHCCCEEEEcchhhhHHHHcccccCC-CH-HH---HHHHHHHHhCCCCC-CEEEEEeCC-HHHHHHHHHhccCCC
Confidence 366678899999988655332222111 000 00 00 11111 1 122222 256777775 789999998886321
Q ss_pred ---------HHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhh
Q psy18086 93 ---------EDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 93 ---------ee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~ 144 (166)
.+-++++.... .++.. ..+. .+ .+|.+++++ ++-.+++..++...
T Consensus 154 ~~~~~e~~~~~~~~~~~~~y-~~l~~-~~~~-~~-~~Ida~~~~---e~V~~~I~~~i~~~ 207 (213)
T PRK13973 154 TPDRFEKEDLAFHEKRREAF-LQIAA-QEPE-RC-VVIDATASP---EAVAAEIWAAVDQR 207 (213)
T ss_pred ccCchhhchHHHHHHHHHHH-HHHHH-hCCC-cE-EEEcCCCCH---HHHHHHHHHHHHHH
Confidence 12223333222 23321 1111 11 345666788 88888888888654
No 82
>KOG3079|consensus
Probab=81.94 E-value=7.7 Score=32.65 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=70.4
Q ss_pred HHHHHHHhcCCcEEEEeCHHHHHH-HHHhhccCCccchhhc----hhhhhhccCCC--CceEEEEEeCCCHHHHHHHhhc
Q psy18086 15 AAVEAVINSGKTCVLDIEVQGVQQ-VKRAGGAMAGAVYVFG----VQQVKRAGGAM--AGAVYVFVKPPSIEELETRLRG 87 (166)
Q Consensus 15 ~~V~~v~~~Gk~~vldid~~Gv~~-lk~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~IFI~PPS~e~Le~RL~~ 87 (166)
+.|++.+++|+++=.++-.+=+.. |+.... +...++-| ..|.+-....+ +--+++|+-.| .|++.+|+..
T Consensus 56 ~~I~~~i~~G~iVP~ei~~~LL~~am~~~~~--~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~-ee~~l~Rll~ 132 (195)
T KOG3079|consen 56 ALIKEIIKNGDLVPVEITLSLLEEAMRSSGD--SNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCP-EETMLKRLLH 132 (195)
T ss_pred HHHHHHHHcCCcCcHHHHHHHHHHHHHhcCC--CCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCC-HHHHHHHHHh
Confidence 357888889987765544433222 222211 00001111 13333222222 23478999997 8999999988
Q ss_pred CCC------CCHHHHHHHHHHHHHH----hhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHh
Q psy18086 88 RGT------ETEDSLRRRLDLARRD----MSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 88 Rgt------etee~I~~Rl~~A~~e----~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~ 143 (166)
|++ +++++|++|+..-... ++|-...|.. +.|.-+.+. ++-+.++...+..
T Consensus 133 R~q~~~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l--~~i~a~~~~---d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 133 RGQSNSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKL--LKINAERSV---DDVFEEVVTAIDA 193 (195)
T ss_pred hcccCCCCCCchHHHHHHHHHHHHcchHHHHHHHccCcE--EEecCCCCH---HHHHHHHHHHhhc
Confidence 775 4788999999976542 3454433412 234334588 8899988887764
No 83
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=81.84 E-value=16 Score=29.98 Aligned_cols=68 Identities=22% Similarity=0.185 Sum_probs=41.6
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCC------CCCH-HHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRG------TETE-DSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEH 139 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rg------tete-e~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ 139 (166)
...+||+..| +|+|.+||.... ++++ +.++.-++. +.--|.. ..|+++..+..- ++..+++.+
T Consensus 95 ~g~vv~L~~~-~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~--R~~~Y~e----~a~~~~~~~~~~---~~v~~~i~~ 164 (172)
T COG0703 95 RGIVVYLDAP-FETLYERLQRDRKRPLLQTEDPREELEELLEE--RQPLYRE----VADFIIDTDDRS---EEVVEEILE 164 (172)
T ss_pred CCeEEEEeCC-HHHHHHHhccccCCCcccCCChHHHHHHHHHH--HHHHHHH----hCcEEecCCCCc---HHHHHHHHH
Confidence 5689999986 999999998321 2344 334443332 2223443 457788777233 677777777
Q ss_pred HHHhh
Q psy18086 140 FGLKS 144 (166)
Q Consensus 140 ii~~~ 144 (166)
.+...
T Consensus 165 ~l~~~ 169 (172)
T COG0703 165 ALEGS 169 (172)
T ss_pred HHHHh
Confidence 66543
No 84
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=81.64 E-value=10 Score=29.89 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=33.5
Q ss_pred EEEEEeCCCHHHHHHHhh----cCCCCCHHHHHHHHHH-HHHHh-hcCCCCCCcccEEEEcCCCCCCHhHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLR----GRGTETEDSLRRRLDL-ARRDM-SYGKDSLRSYGIISELAFFLEYNSAAGEI 136 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~----~Rgtetee~I~~Rl~~-A~~e~-~~~~~~~~~fD~vIvNd~dl~~~e~a~~~ 136 (166)
.+|||.+|....+++|+. .|+ .+.++...+... ..... .+-..+-..+|++|.|+.+. +.+..-
T Consensus 121 ~~i~v~~~~~~~~~R~~~Rd~~~rg-~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~~~---~~~~~~ 190 (198)
T cd02023 121 LKIFVDTDADVRLIRRIERDIVERG-RDLESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGGDN---HVAIDL 190 (198)
T ss_pred eEEEEECChhHHHHHHHHHHhhhcC-CCHHHHHHHHHHhhhhhHHHhCccchhceeEEECCCCCc---cHHHHH
Confidence 679998874444655552 345 355554444432 22111 11111111789999988555 555553
No 85
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=81.54 E-value=6.8 Score=32.58 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=39.1
Q ss_pred EEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCccc----EEEEcCCCCCCHhHHHHHHHHHHHh
Q psy18086 71 VFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYG----IISELAFFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 71 IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD----~vIvNd~dl~~~e~a~~~l~~ii~~ 143 (166)
|+|.--.+++|.+||++|| .+++.|+.=+..---..-+...-. .|| +-..|. ++ +++.+.+..++..
T Consensus 86 VvVLR~~p~~L~~RLk~RG-y~~eKI~ENveAEi~~vi~~EA~E-~~~~v~evdtt~~-s~---ee~~~~i~~ii~~ 156 (180)
T COG1936 86 VVVLRADPEVLYERLKGRG-YSEEKILENVEAEILDVILIEAVE-RFEAVIEVDTTNR-SP---EEVAEEIIDIIGG 156 (180)
T ss_pred EEEEcCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHH-hcCceEEEECCCC-CH---HHHHHHHHHHHcc
Confidence 3333335789999999999 688877654432111110100000 223 223455 78 9999999999875
No 86
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=80.31 E-value=4.4 Score=33.64 Aligned_cols=47 Identities=36% Similarity=0.608 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCcEEEEeCHH----HHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHH
Q psy18086 14 RAAVEAVINSGKTCVLDIEVQ----GVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETR 84 (166)
Q Consensus 14 ~~~V~~v~~~Gk~~vldid~~----Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~R 84 (166)
.++|++++.+++.++..+... .++.+|+. ..+++||.|-+.+.+-.+
T Consensus 120 ~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~------------------------~~v~v~lt~~NR~~i~~~ 170 (179)
T COG1618 120 REAVEEVLKSGKPLIATLHRRSRHPLVQRIKKL------------------------GGVYVFLTPENRNRILNE 170 (179)
T ss_pred HHHHHHHhcCCCcEEEEEecccCChHHHHhhhc------------------------CCEEEEEccchhhHHHHH
Confidence 367889999999999999888 88888877 457888888776654433
No 87
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=79.94 E-value=6.8 Score=32.60 Aligned_cols=64 Identities=17% Similarity=-0.009 Sum_probs=36.3
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhh
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~ 144 (166)
+.+.|=|.. |.++-.+|.... |+. .+.+..|- +-+.-..||++|.||++. +...++|..++...
T Consensus 115 ~~~~VRV~A-seetR~~Rgw~F---t~g-----vdd~~SEc--~lDd~~~~D~vi~Nd~~~---~~l~~~l~~l~~~i 178 (182)
T TIGR01223 115 VTQTVRVVA-LEQSRQQRGWVF---TPG-----VDDAESEC--GLDNFGDFDWVIENHGVE---QRLEEQLENLIEFI 178 (182)
T ss_pred ceEEEEEec-CHHHHHHHHHhc---ccc-----cccccccc--CCCcccceeEEEecCCCh---HHHHHHHHHHHHHH
Confidence 677777776 466655555322 111 12222222 211111599999999888 77777777776543
No 88
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=79.61 E-value=27 Score=27.12 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhch-hhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCCC
Q psy18086 15 AAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGV-QQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 90 (166)
Q Consensus 15 ~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgt 90 (166)
..|...++.|++||+|=-.-........ .+ .+-..-+ +..+...+...+ ++||+..| .++..+|+.+|+.
T Consensus 71 ~~I~~~l~~g~~VI~DRy~~S~lay~~~---~~-~~~~~~~~~~~~~~~~~~PD-l~~~Ldv~-pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 71 RVIRPALKRGKIVICDRYIYSTLAYQGA---KG-ELDIDWIWRLNKDIFLPKPD-LTFFLDVD-PEEALKRIAKRGE 141 (186)
T ss_dssp HTHHHHHHTTSEEEEESEHHHHHHHHTT---TT-SSTHHHHHHHHHHHHTTE-S-EEEEEECC-HHHHHHHHHHTSS
T ss_pred HHHHHHHcCCCEEEEechhHHHHHhCcc---cc-CCcchhhhHHHHHhcCCCCC-EEEEEecC-HHHHHHHHHcCCc
Confidence 3567778899999999766655544433 11 0000001 222222222222 66777764 7999999999886
No 89
>PRK03839 putative kinase; Provisional
Probab=79.03 E-value=18 Score=27.95 Aligned_cols=68 Identities=10% Similarity=0.073 Sum_probs=37.4
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh---h-cCCCCCCcccEEEEcC-CCCCCHhHHHHHHHHHHHh
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDM---S-YGKDSLRSYGIISELA-FFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~---~-~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ii~~ 143 (166)
++||+..| .+++.+|+..|+... ..+..++.....++ . +.. . ...++|..+ .++ ++.++++..++..
T Consensus 82 ~vi~L~~~-~~~~~~Rl~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~-r--~~~~~Id~~~~s~---eev~~~I~~~l~~ 153 (180)
T PRK03839 82 YVIVLRAH-PKIIKERLKERGYSK-KKILENVEAELVDVCLCEALEE-K--EKVIEVDTTGKTP---EEVVEEILELIKS 153 (180)
T ss_pred EEEEEECC-HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHh-c--CCEEEEECCCCCH---HHHHHHHHHHHhc
Confidence 56788764 899999999887432 22322221110111 1 111 1 112455443 267 8888888888865
Q ss_pred h
Q psy18086 144 S 144 (166)
Q Consensus 144 ~ 144 (166)
.
T Consensus 154 ~ 154 (180)
T PRK03839 154 G 154 (180)
T ss_pred C
Confidence 3
No 90
>PRK00889 adenylylsulfate kinase; Provisional
Probab=78.82 E-value=5 Score=31.00 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=35.8
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHhhcCCCCCCcccEEEEcC-CCCCCHhHHHHHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGTET---EDSLRRRLDLARRDMSYGKDSLRSYGIISELA-FFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgtet---ee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ii~ 142 (166)
...+|||..| .+++.+|.+ |+... .++|..++.. +..+ |. |. ..|++|..+ .++ +++++++.+.+.
T Consensus 100 ~~~~v~l~~~-~e~~~~R~~-~~l~~~~~~~~i~~~~~~-~~~~-~~--p~-~ad~~i~~~~~~~---~~~~~~i~~~l~ 169 (175)
T PRK00889 100 NFLEVFVDAP-LEVCEQRDV-KGLYAKARAGEIKHFTGI-DDPY-EP--PL-NPEVECRTDLESL---EESVDKVLQKLE 169 (175)
T ss_pred CeEEEEEcCC-HHHHHHhCc-ccHHHHHHcCCCCCCccc-CCCC-CC--CC-CCcEEEECCCCCH---HHHHHHHHHHHH
Confidence 4678999987 888888852 21000 1112212111 0111 11 22 457777655 367 888888888775
Q ss_pred h
Q psy18086 143 K 143 (166)
Q Consensus 143 ~ 143 (166)
.
T Consensus 170 ~ 170 (175)
T PRK00889 170 E 170 (175)
T ss_pred H
Confidence 3
No 91
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=77.87 E-value=19 Score=27.66 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=28.7
Q ss_pred eEEEEEeCCCHHHHHHHhhcCC-------------------------CCCHHHHHHHHHHHHH
Q psy18086 68 AVYVFVKPPSIEELETRLRGRG-------------------------TETEDSLRRRLDLARR 105 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~Rg-------------------------tetee~I~~Rl~~A~~ 105 (166)
.++||+..| .+++.+||..|. .++++.+++|+.....
T Consensus 106 ~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~R~~~y~~ 167 (194)
T cd01428 106 DKVIELDVP-DEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKE 167 (194)
T ss_pred CEEEEEECC-HHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHHHHHHHHH
Confidence 466777776 788999998775 3568889999987764
No 92
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=77.72 E-value=32 Score=26.99 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=38.8
Q ss_pred eEEEEEeCCCHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCC-CCCCHhHHHHHHHHH
Q psy18086 68 AVYVFVKPPSIEELETRLRGRGT------ETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAF-FLEYNSAAGEIFEHF 140 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~Rgt------etee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~-dl~~~e~a~~~l~~i 140 (166)
..+||+..| .+++.+|+..+.. ....+.-..+...+ +--|.. ..|++|.+++ +. ++..+++.+.
T Consensus 98 ~~vv~L~~~-~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R-~~~Y~~----~Ad~~idt~~~s~---~ei~~~i~~~ 168 (172)
T PRK05057 98 GVVVYLETT-IEKQLARTQRDKKRPLLQVDDPREVLEALANER-NPLYEE----IADVTIRTDDQSA---KVVANQIIHM 168 (172)
T ss_pred CEEEEEeCC-HHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHh----hCCEEEECCCCCH---HHHHHHHHHH
Confidence 368999986 8999999975432 12222323333433 333544 6789998772 34 5666666665
Q ss_pred H
Q psy18086 141 G 141 (166)
Q Consensus 141 i 141 (166)
+
T Consensus 169 l 169 (172)
T PRK05057 169 L 169 (172)
T ss_pred H
Confidence 5
No 93
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=77.67 E-value=16 Score=26.57 Aligned_cols=36 Identities=8% Similarity=0.011 Sum_probs=26.1
Q ss_pred eEEEEEeCCCHHHHHHHhhc-----CCCCCHHHHHHHHHHHH
Q psy18086 68 AVYVFVKPPSIEELETRLRG-----RGTETEDSLRRRLDLAR 104 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~-----Rgtetee~I~~Rl~~A~ 104 (166)
.+.||+..| ++...+|+.+ +...|++++..++..-.
T Consensus 84 ~~~i~l~~~-~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d 124 (147)
T cd02020 84 DLKIFLTAS-PEVRAKRRAKQLQAKGEGVDLEEILAEIIERD 124 (147)
T ss_pred CEEEEEECC-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 367888876 7777777766 54568888888877653
No 94
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=77.52 E-value=26 Score=25.82 Aligned_cols=53 Identities=25% Similarity=0.299 Sum_probs=33.0
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCC
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGT------ETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFL 127 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgt------etee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl 127 (166)
..++|||..| .+++.+|+..|.. ...+.+..+...- ...|.. .+|++|..+ ++
T Consensus 92 ~~~~i~l~~~-~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r--~~~Y~~----~ad~~i~~~-~~ 150 (154)
T cd00464 92 NGIVVWLDAS-PEELLERLARDKTRPLLQDEDPERLRELLEER--EPLYRE----VADLTIDTD-EL 150 (154)
T ss_pred CCeEEEEeCC-HHHHHHHhccCCCCCCCCCCCHHHHHHHHHHH--HHHHHH----hCcEEEECC-CC
Confidence 4578999987 8999999987741 1222444444432 222333 578898777 44
No 95
>PRK13976 thymidylate kinase; Provisional
Probab=77.33 E-value=39 Score=27.74 Aligned_cols=116 Identities=9% Similarity=0.042 Sum_probs=59.0
Q ss_pred HHHHHhcCCcEEEEeCHHHHHHHHHh-hccCCccchhhchhhhhh-ccCCCCceEEEEEeCCCHHHHHHHhhcCCCCC-H
Q psy18086 17 VEAVINSGKTCVLDIEVQGVQQVKRA-GGAMAGAVYVFGVQQVKR-AGGAMAGAVYVFVKPPSIEELETRLRGRGTET-E 93 (166)
Q Consensus 17 V~~v~~~Gk~~vldid~~Gv~~lk~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgtet-e 93 (166)
|...+++|+++|+|=-.......... .|+ +.-.+ ..+.+ .++-.. -++||+..| .++..+|+++++-|. .
T Consensus 79 I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~--~~~~i---~~l~~~~~~~~P-Dl~i~Ldv~-~e~a~~Ri~~~~~e~~~ 151 (209)
T PRK13976 79 ILPALLQGKIVICDRFIDSTIAYQGYGCGV--DLSLI---RDLNDLVVDKYP-DITFVLDID-IELSLSRADKNGYEFMD 151 (209)
T ss_pred HHHHHHCCCEEEECCCcCHHHHhccccCCC--CHHHH---HHHHHHhhCCCC-CEEEEEeCC-HHHHHHHhcccchhccc
Confidence 56667899999998544433322111 000 00011 11111 122222 367777775 888889987765442 3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccEEEEcC---CC---CCCHhHHHHHHHHHHHhhh
Q psy18086 94 DSLRRRLDLARRDMSYGKDSLRSYGIISELA---FF---LEYNSAAGEIFEHFGLKSS 145 (166)
Q Consensus 94 e~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd---~d---l~~~e~a~~~l~~ii~~~~ 145 (166)
.+...|+..+-.++.... +. .+. +|.+. .+ + ++..+++.+++.+..
T Consensus 152 ~~~l~~v~~~Y~~l~~~~-~~-~~~-~id~~~~~~~~~~~---e~v~~~i~~~i~~~~ 203 (209)
T PRK13976 152 LEFYDKVRKGFREIVIKN-PH-RCH-VITCIDAKDNIEDI---NSVHLEIVKLLHAVT 203 (209)
T ss_pred HHHHHHHHHHHHHHHHhC-CC-CeE-EEECCCCccCcCCH---HHHHHHHHHHHHHHH
Confidence 456667776655543211 11 222 23331 13 5 777788877775543
No 96
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=74.57 E-value=5.1 Score=35.18 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCCCC-C
Q psy18086 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE-T 92 (166)
Q Consensus 14 ~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgte-t 92 (166)
++.|++++++|+++||+ -|..-+.++ +. ..+ +..||+.+.+++||+.+.++ .
T Consensus 83 ~~~i~~i~~~gk~pIlv---GGt~~Y~~a---l~-------------------~g~--~~~p~~~~~~r~~l~~~~~~~g 135 (307)
T PRK00091 83 LAAIADILARGKLPILV---GGTGLYIKA---LL-------------------EGL--SPLPPADPELRAELEALAAEEG 135 (307)
T ss_pred HHHHHHHHhCCCCEEEE---CcHHHHHHH---hc-------------------cCC--CCCCCCCHHHHHHHHHHHHhcC
Confidence 56778889999999997 444443445 21 112 26789889999999877543 2
Q ss_pred HHHHHHHHHH
Q psy18086 93 EDSLRRRLDL 102 (166)
Q Consensus 93 ee~I~~Rl~~ 102 (166)
.+.+-.+|..
T Consensus 136 ~~~l~~~L~~ 145 (307)
T PRK00091 136 WEALHAELAE 145 (307)
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 97
>PRK12338 hypothetical protein; Provisional
Probab=74.23 E-value=13 Score=33.08 Aligned_cols=62 Identities=10% Similarity=-0.037 Sum_probs=37.9
Q ss_pred EeCCCHHHHHHHhhcCCCCC---------HHHHHHHHHHHHHHhhcCCCCCCcccEE-EEcCCCCCCHhHHHHHHHHHHH
Q psy18086 73 VKPPSIEELETRLRGRGTET---------EDSLRRRLDLARRDMSYGKDSLRSYGII-SELAFFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 73 I~PPS~e~Le~RL~~Rgtet---------ee~I~~Rl~~A~~e~~~~~~~~~~fD~v-IvNd~dl~~~e~a~~~l~~ii~ 142 (166)
+.-|+.++..+|...|...+ .+.|+...+. -...+. .++.. |.|+ ++ ++|++++.++|.
T Consensus 135 vl~~dee~h~~Rf~~R~~~~~r~~~~l~~f~~Ir~Iq~~---l~~~A~----e~~VpvI~N~-di---d~Tv~~ile~I~ 203 (319)
T PRK12338 135 ILSADEEVHKERFVKRAMEIKRGGKQLEYFRENRIIHDH---LVEQAR----EHNVPVIKND-DI---DCTVKKMLSYIR 203 (319)
T ss_pred EEECCHHHHHHHHHHhhhccCCchhhhhChHHHHHHHHH---HHHhHh----hCCCceeCCC-cH---HHHHHHHHHHHH
Confidence 33378999999998865322 1222211111 112233 55655 7888 99 999999999987
Q ss_pred hhh
Q psy18086 143 KSS 145 (166)
Q Consensus 143 ~~~ 145 (166)
...
T Consensus 204 e~s 206 (319)
T PRK12338 204 EVC 206 (319)
T ss_pred hhe
Confidence 553
No 98
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=73.54 E-value=53 Score=30.92 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=42.5
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCC-CCCCHhHHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGT------ETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAF-FLEYNSAAGEIFEH 139 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgt------etee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~-dl~~~e~a~~~l~~ 139 (166)
...+||+..| ++++.+|+..+.. .+.+++.+.++ +++--|.. ..|++|.+++ +. +++.+++.+
T Consensus 103 ~g~vv~L~~~-~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~--~R~~~Y~~----~Ad~~i~~~~~~~---~~~~~~i~~ 172 (542)
T PRK14021 103 GGRVVYLDAD-PKEAMERANRGGGRPMLNGDANKRWKKLFK--QRDPVFRQ----VANVHVHTRGLTP---QAAAKKLID 172 (542)
T ss_pred CCEEEEEECC-HHHHHHHHhCCCCCCCCCCCcHHHHHHHHH--HHHHHHHh----hCCEEEECCCCCH---HHHHHHHHH
Confidence 3478999985 9999999864321 12344544333 23444544 6788887662 55 778888877
Q ss_pred HHHh
Q psy18086 140 FGLK 143 (166)
Q Consensus 140 ii~~ 143 (166)
.+..
T Consensus 173 ~~~~ 176 (542)
T PRK14021 173 MVAE 176 (542)
T ss_pred HHHh
Confidence 7753
No 99
>PLN02842 nucleotide kinase
Probab=72.90 E-value=39 Score=32.07 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=36.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHhhc-CCCCCCcc-c-EE-EEcCCCCCCHhHHHHHHHHHHHhhh
Q psy18086 79 EELETRLRGRGTETEDSLRRRLDLARRDMSY-GKDSLRSY-G-II-SELAFFLEYNSAAGEIFEHFGLKSS 145 (166)
Q Consensus 79 e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~-~~~~~~~f-D-~v-IvNd~dl~~~e~a~~~l~~ii~~~~ 145 (166)
++...||..|..++++.|++||...+..... .. .| . ++ |..+.++ ++-++++.+++....
T Consensus 141 ~~~~~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl~----~Y~~rl~~IDAsqs~---EeVfeeI~~iL~~~L 204 (505)
T PLN02842 141 EEIKARLITRPDDTEEKVKARLQIYKKNAEAILS----TYSDIMVKIDGNRPK---EVVFEEISSLLSQIQ 204 (505)
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHhhhHHH----hcCcEEEEEECCCCH---HHHHHHHHHHHHHHH
Confidence 3344455566677899999999987654421 11 12 2 22 3333467 888888888887553
No 100
>PRK07933 thymidylate kinase; Validated
Probab=69.75 E-value=29 Score=28.33 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=36.1
Q ss_pred EEEEEeCCCHHHHHHHhhcCCC----------CCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcC-CCCCCHhHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGT----------ETEDSLRRRLDLARRDMSYGKDSLRSYGIISELA-FFLEYNSAAGEIF 137 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgt----------etee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l 137 (166)
++||+..| .++..+|+.+|+. |+..+...|+..+-.++.....+. .++++|. .++ ++-.+++
T Consensus 135 l~i~Ldv~-~e~a~~Ri~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~---~~~~ida~~~~---e~v~~~i 207 (213)
T PRK07933 135 LQVLLDVP-VELAAERARRRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGG---PWLVVDPDVDP---AALAARL 207 (213)
T ss_pred EEEEecCC-HHHHHHHHHhhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCC---CeEEeCCCCCH---HHHHHHH
Confidence 66777765 7899999988863 122355566666544443221111 3344443 345 5555555
Q ss_pred HHHH
Q psy18086 138 EHFG 141 (166)
Q Consensus 138 ~~ii 141 (166)
.+.+
T Consensus 208 ~~~~ 211 (213)
T PRK07933 208 AAAL 211 (213)
T ss_pred HHHh
Confidence 5543
No 101
>PLN02674 adenylate kinase
Probab=69.48 E-value=26 Score=29.87 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=42.1
Q ss_pred EEEEEeCCCHHHHHHHhhcC---------------------------------CCCCHHHHHHHHHHHHHHh----hcCC
Q psy18086 69 VYVFVKPPSIEELETRLRGR---------------------------------GTETEDSLRRRLDLARRDM----SYGK 111 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~R---------------------------------gtetee~I~~Rl~~A~~e~----~~~~ 111 (166)
.+|++..| .+++.+||.+| ..++++.|++||+....+. +|-.
T Consensus 140 ~vi~l~v~-~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~ 218 (244)
T PLN02674 140 KVLNFAID-DAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYA 218 (244)
T ss_pred EEEEEECC-HHHHHHHHhccccccccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46777765 68888998876 2357899999999886543 3322
Q ss_pred CCCCcccEEEEcC-CCCCCHhHHHHHHHHHH
Q psy18086 112 DSLRSYGIISELA-FFLEYNSAAGEIFEHFG 141 (166)
Q Consensus 112 ~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ii 141 (166)
..+ . ++.+|. .++ ++.++++..++
T Consensus 219 ~~g-~--l~~Ida~~~~---~eV~~~i~~~l 243 (244)
T PLN02674 219 KKG-V--VANLHAEKPP---KEVTAEVQKAL 243 (244)
T ss_pred hcC-C--EEEEECCCCH---HHHHHHHHHHh
Confidence 111 1 233443 467 77777777665
No 102
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=69.43 E-value=46 Score=28.45 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=41.9
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCH-------HHHHHHHHHH-HHHhhcCCCCCCcccEEEEcC--CCCCCHhHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETE-------DSLRRRLDLA-RRDMSYGKDSLRSYGIISELA--FFLEYNSAAGEIFE 138 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtete-------e~I~~Rl~~A-~~e~~~~~~~~~~fD~vIvNd--~dl~~~e~a~~~l~ 138 (166)
.+||+.. |.+++.+|+.+||+.=| ++--++|... ..++..-. .+..+.+|. -|+-.|+++++.+.
T Consensus 129 llIyLd~-~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~----~~~~l~i~~~~~D~~~~~~d~~~v~ 203 (216)
T COG1428 129 LLIYLDA-SLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYD----ACPVLGIDGDSIDFVNNEQDLEKVL 203 (216)
T ss_pred EEEEEeC-CHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcc----cCCeeeeccceecccCCHHHHHHHH
Confidence 7899998 79999999999997422 1233444443 33554322 122222221 13334577777777
Q ss_pred HHHHhhh
Q psy18086 139 HFGLKSS 145 (166)
Q Consensus 139 ~ii~~~~ 145 (166)
..|....
T Consensus 204 ~~I~~~~ 210 (216)
T COG1428 204 DQILAKL 210 (216)
T ss_pred HHHHHHH
Confidence 7776554
No 103
>PLN02459 probable adenylate kinase
Probab=68.81 E-value=26 Score=30.41 Aligned_cols=48 Identities=8% Similarity=0.003 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHh----hcCCCCCCcccEEEEcC-CCCCCHhHHHHHHHHHHHh
Q psy18086 90 TETEDSLRRRLDLARRDM----SYGKDSLRSYGIISELA-FFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 90 tetee~I~~Rl~~A~~e~----~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ii~~ 143 (166)
.++++.|++||...+.+. +|-...+ . ++.+|. +++ ++.++++..++..
T Consensus 199 DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g-~--l~~id~~~~~---~eV~~~i~~~l~~ 251 (261)
T PLN02459 199 DDTEEVVKARLRVYKEESQPVEDFYRKRG-K--LLEFELPGGI---PETWPRLLQALNL 251 (261)
T ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHhcC-C--eEEEeCCCCH---HHHHHHHHHHhch
Confidence 357889999999876543 3322122 1 233443 477 8888888888854
No 104
>PRK03846 adenylylsulfate kinase; Provisional
Probab=68.80 E-value=21 Score=28.38 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=48.7
Q ss_pred HHHhcCCcEEEEeC---HHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCCCC---C
Q psy18086 19 AVINSGKTCVLDIE---VQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE---T 92 (166)
Q Consensus 19 ~v~~~Gk~~vldid---~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgte---t 92 (166)
..+..|.+|+.+.. ..-...+++. ++. ...++||+..| .+++.+|-. |... .
T Consensus 91 ~~~~~G~~VI~~~~~~~~~~R~~~r~~---l~~-----------------~~~i~V~L~~~-~e~~~~R~~-r~l~~~~~ 148 (198)
T PRK03846 91 LMVDAGLVVLTAFISPHRAERQMVRER---LGE-----------------GEFIEVFVDTP-LAICEARDP-KGLYKKAR 148 (198)
T ss_pred HHhhCCCEEEEEeCCCCHHHHHHHHHH---ccc-----------------CCEEEEEEcCC-HHHHHhcCc-hhHHHHhh
Confidence 35567888887653 2344455555 321 02447999986 788888821 1100 0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccEEEEcC-CCCCCHhHHHHHHHHHHH
Q psy18086 93 EDSLRRRLDLARRDMSYGKDSLRSYGIISELA-FFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 93 ee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ii~ 142 (166)
.+++.. +. .....|. .|. ..|++|.++ ..+ ++.++++.+.+.
T Consensus 149 ~~~~~~-l~--~~r~~Y~-~p~-~ad~~Idt~~~~~---~~vv~~Il~~l~ 191 (198)
T PRK03846 149 AGEIRN-FT--GIDSVYE-APE-SPEIHLDTGEQLV---TNLVEQLLDYLR 191 (198)
T ss_pred cCCccC-cc--cccccCC-CCC-CCCEEEECCCCCH---HHHHHHHHHHHH
Confidence 111211 11 1111243 123 568888865 255 677777777664
No 105
>PRK00625 shikimate kinase; Provisional
Probab=68.67 E-value=47 Score=26.49 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=18.8
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCC
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGT 90 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgt 90 (166)
...+||+..| .+++.+||..|+.
T Consensus 96 ~~~Vv~L~~~-~e~l~~Rl~~R~~ 118 (173)
T PRK00625 96 RGLLVLLSLP-IATIYQRLQKRGL 118 (173)
T ss_pred CCEEEEEECC-HHHHHHHHhcCCC
Confidence 3568999886 8999999998864
No 106
>PRK13948 shikimate kinase; Provisional
Probab=67.90 E-value=63 Score=26.06 Aligned_cols=64 Identities=16% Similarity=0.019 Sum_probs=36.9
Q ss_pred EEEEEeCCCHHHHHHHhhcCCC------CCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCC-CCCCHhHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGT------ETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAF-FLEYNSAAGEIFEHFG 141 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgt------etee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~-dl~~~e~a~~~l~~ii 141 (166)
.+||+..| .++|.+||..+.+ ...+++...++. ++--| . ..|++|.+++ .. ++..+++.+.+
T Consensus 105 ~vV~L~~~-~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~--R~~~Y-~----~a~~~i~t~~~~~---~ei~~~i~~~l 173 (182)
T PRK13948 105 PVVVLWAS-PETIYERTRPGDRPLLQVEDPLGRIRTLLNE--REPVY-R----QATIHVSTDGRRS---EEVVEEIVEKL 173 (182)
T ss_pred eEEEEECC-HHHHHHHhcCCCCCCCCCCChHHHHHHHHHH--HHHHH-H----hCCEEEECCCCCH---HHHHHHHHHHH
Confidence 46788865 8999999964421 112334433322 22224 2 3588888762 45 66667766666
Q ss_pred Hh
Q psy18086 142 LK 143 (166)
Q Consensus 142 ~~ 143 (166)
..
T Consensus 174 ~~ 175 (182)
T PRK13948 174 WA 175 (182)
T ss_pred HH
Confidence 44
No 107
>PRK13949 shikimate kinase; Provisional
Probab=67.33 E-value=59 Score=25.51 Aligned_cols=18 Identities=39% Similarity=0.342 Sum_probs=14.9
Q ss_pred EEEEEeCCCHHHHHHHhhc
Q psy18086 69 VYVFVKPPSIEELETRLRG 87 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~ 87 (166)
++||+..| .+++.+|++.
T Consensus 96 ~vi~L~~~-~~~~~~Ri~~ 113 (169)
T PRK13949 96 TTVYLKVS-PEVLFVRLRL 113 (169)
T ss_pred eEEEEECC-HHHHHHHHhc
Confidence 57899986 8899999973
No 108
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=67.29 E-value=3 Score=32.16 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETE 93 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtete 93 (166)
.+||+..| .+++.+|+++||++-|
T Consensus 70 l~IYL~~~-~e~~~~RI~kRgR~~E 93 (146)
T PF01712_consen 70 LIIYLDAS-PETCLERIKKRGREEE 93 (146)
T ss_dssp EEEEEE---HHHHHHHHHHCTTGGG
T ss_pred eEEEEeCC-HHHHHHHHHHhCCchh
Confidence 78999985 9999999999997543
No 109
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=66.79 E-value=33 Score=26.65 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=27.5
Q ss_pred HHHHhcCCcEEEEeCHHHHHHHHHhh-ccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHH
Q psy18086 18 EAVINSGKTCVLDIEVQGVQQVKRAG-GAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETR 84 (166)
Q Consensus 18 ~~v~~~Gk~~vldid~~Gv~~lk~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~R 84 (166)
+..+.+|.+||+|.- ..-...|... .+.+. ....+||+..| .+++.+|
T Consensus 84 ~~~~~~G~~VI~d~~-~~~~~~r~~~~~~~~~-----------------~~~~~v~l~~~-~e~~~~R 132 (184)
T TIGR00455 84 KLFVRNGIIVITSFI-SPYRADRQMVRELIEK-----------------GEFIEVFVDCP-LEVCEQR 132 (184)
T ss_pred HHHHcCCCEEEEecC-CCCHHHHHHHHHhCcC-----------------CCeEEEEEeCC-HHHHHHh
Confidence 446788999999864 2223333220 00110 13467888876 7888777
No 110
>PRK00023 cmk cytidylate kinase; Provisional
Probab=64.91 E-value=43 Score=27.65 Aligned_cols=76 Identities=12% Similarity=0.019 Sum_probs=37.7
Q ss_pred ceEEEEEeCCCHHHHHHHhhcC---C-CCCHHHHHHHHHHHHH-HhhcCCCC-CCcccEEEEcCCCCCCHhHHHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGR---G-TETEDSLRRRLDLARR-DMSYGKDS-LRSYGIISELAFFLEYNSAAGEIFEHF 140 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~R---g-tetee~I~~Rl~~A~~-e~~~~~~~-~~~fD~vIvNd~dl~~~e~a~~~l~~i 140 (166)
..+.|||.+|.....+.|.+.+ + ..+.+++.+.+..-.. +..+...| ...-|++++|...+ -.+++++.+.++
T Consensus 140 a~~~ifl~a~~e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l-~~ee~v~~I~~~ 218 (225)
T PRK00023 140 AELKIFLTASAEERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGL-SIEEVVEKILAL 218 (225)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCC-CHHHHHHHHHHH
Confidence 4578999987543333333332 2 2456555555543322 22222222 11234455554232 127788888887
Q ss_pred HHh
Q psy18086 141 GLK 143 (166)
Q Consensus 141 i~~ 143 (166)
+.+
T Consensus 219 i~~ 221 (225)
T PRK00023 219 VEE 221 (225)
T ss_pred HHH
Confidence 754
No 111
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=64.34 E-value=15 Score=25.87 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=17.9
Q ss_pred EEEeCCCHHHHHHHhhcCCCCCHH
Q psy18086 71 VFVKPPSIEELETRLRGRGTETED 94 (166)
Q Consensus 71 IFI~PPS~e~Le~RL~~Rgtetee 94 (166)
|||.+| .+++.+|+.+|++..+.
T Consensus 96 i~L~~~-~e~~~~R~~~R~~~~~~ 118 (129)
T PF13238_consen 96 IFLDCS-PEELRKRLKKRGRKEEK 118 (129)
T ss_dssp EEEE---HHHHHHHHHCTTTSCHH
T ss_pred EEEECC-HHHHHHHHHhCCCCCCC
Confidence 889986 69999999999876654
No 112
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=61.38 E-value=56 Score=31.06 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCcEEEEeC---H---HHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcC
Q psy18086 15 AAVEAVINSGKTCVLDIE---V---QGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGR 88 (166)
Q Consensus 15 ~~V~~v~~~Gk~~vldid---~---~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~R 88 (166)
+.+++.+++|+.||+|-- . .....+-+.+|+ .+.++++..| .+++..|++.|
T Consensus 411 ~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv---------------------~v~~i~~~~p-~e~~~~Rn~~R 468 (526)
T TIGR01663 411 TACERALDQGKRCAIDNTNPDAASRAKFLQCARAAGI---------------------PCRCFLFNAP-LAQAKHNIAFR 468 (526)
T ss_pred HHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCC---------------------eEEEEEeCCC-HHHHHHHHHhh
Confidence 456678889999998743 1 122222222232 5667777775 89999999888
Q ss_pred CC
Q psy18086 89 GT 90 (166)
Q Consensus 89 gt 90 (166)
..
T Consensus 469 ~~ 470 (526)
T TIGR01663 469 EL 470 (526)
T ss_pred cc
Confidence 53
No 113
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=60.71 E-value=39 Score=26.30 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=17.1
Q ss_pred EEEEEeCCCHHHHHHHhhcCCC
Q psy18086 69 VYVFVKPPSIEELETRLRGRGT 90 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgt 90 (166)
.+||+..| .++..+|+.+|+.
T Consensus 127 ~~i~l~~~-~~~~~~Ri~~R~r 147 (193)
T cd01673 127 LVIYLDAS-PETCLKRIKKRGR 147 (193)
T ss_pred EEEEEeCC-HHHHHHHHHhcCc
Confidence 66777764 8999999999885
No 114
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=60.63 E-value=1.1e+02 Score=26.33 Aligned_cols=108 Identities=12% Similarity=0.015 Sum_probs=50.8
Q ss_pred cCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCCC
Q psy18086 11 MVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 90 (166)
Q Consensus 11 GTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgt 90 (166)
|.-+++|+..+..+.++|+| |.+-.+.+|-. +| +-+=.+.-...+||+..| .|...+|=.+|+.
T Consensus 58 ~~l~s~v~r~ls~~~iVI~D-d~nYiKg~RYe--ly------------clAr~~~~~~c~i~~~~~-~e~~~~~N~~R~~ 121 (270)
T PF08433_consen 58 GSLKSAVERALSKDTIVILD-DNNYIKGMRYE--LY------------CLARAYGTTFCVIYCDCP-LETCLQRNSKRPE 121 (270)
T ss_dssp HHHHHHHHHHHTT-SEEEE--S---SHHHHHH--HH------------HHHHHTT-EEEEEEEE---HHHHHHHHHHTT-
T ss_pred HHHHHHHHHhhccCeEEEEe-CCchHHHHHHH--HH------------HHHHHcCCCEEEEEECCC-HHHHHHhhhccCC
Confidence 44567888888888878776 34444544422 11 000011114567999987 7887777677753
Q ss_pred ---CCHHHHHHHHHHHHH--HhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHH
Q psy18086 91 ---ETEDSLRRRLDLARR--DMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 91 ---etee~I~~Rl~~A~~--e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~ 142 (166)
.+++.|.....+-+. ....|+ ..-++|.++ +- +..++++.+.+.
T Consensus 122 ~~~~~~e~i~~m~~RfE~P~~~nrWD----~plf~i~~~-~~---~~~~~~I~~~l~ 170 (270)
T PF08433_consen 122 PERYPEETIDDMIQRFEEPDPKNRWD----SPLFTIDSS-DE---ELPLEEIWNALF 170 (270)
T ss_dssp S--S-HHHHHHHHHH---TTSS-GGG----S-SEEEE-T-TS------HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCCcc----CCeEEEecC-CC---CCCHHHHHHHHH
Confidence 346666655544322 112233 234566644 44 566677777664
No 115
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=60.61 E-value=51 Score=31.40 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=36.6
Q ss_pred eEEEEEeCCCHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcC-CCCCCHhHHHHHHHHHHH
Q psy18086 68 AVYVFVKPPSIEELETRLRGRGT--ETEDSLRRRLDLARRDMSYGKDSLRSYGIISELA-FFLEYNSAAGEIFEHFGL 142 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~Rgt--etee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ii~ 142 (166)
.++||+..| .+++.+|+++.-- ...++|+..+. ....|-. +. ..|++|.++ .++ +++++++...+.
T Consensus 493 fivV~L~~p-~e~l~~R~rr~Ll~~~~~~~i~~l~~---~R~~yy~-p~-~Adl~IDt~~~s~---~eiv~~Il~~L~ 561 (568)
T PRK05537 493 FIEVHVATP-LEVCEQRDRKGLYAKAREGKIKGFTG---ISDPYEP-PA-NPELVIDTTNVTP---DECAHKILLYLE 561 (568)
T ss_pred EEEEEEcCC-HHHHHHhccccccccchhchhhcccc---ccccccC-CC-CCcEEEECCCCCH---HHHHHHHHHHHH
Confidence 467899986 9999999753210 01122322211 0111211 12 468888876 256 778787777764
No 116
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=58.62 E-value=8.8 Score=26.48 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhh
Q psy18086 15 AAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQV 58 (166)
Q Consensus 15 ~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~ 58 (166)
.++-+.+.+|+++++|++.-.....++...|+++.+|.-+.++.
T Consensus 13 ~~i~~~l~~g~~Vivnl~~l~~~~~~Ri~Dfl~G~~~al~G~i~ 56 (73)
T PF04472_consen 13 REIVDALREGKIVIVNLENLDDEEAQRILDFLSGAVYALDGDIQ 56 (73)
T ss_dssp HHHHHHHHTT--EEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHhchheeeCCEEE
Confidence 34667789999999999877777666665545544444444333
No 117
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=55.82 E-value=71 Score=28.27 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=30.6
Q ss_pred EEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHh
Q psy18086 72 FVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 72 FI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~ 143 (166)
++.|.|.+.|.+.+..=-..+++..+..-+.|++.... .| ++ +...+++.+++..
T Consensus 351 lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~------~f--------~~---~~~~~~l~~~~~~ 405 (406)
T PRK15427 351 LVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVET------DF--------NQ---QVINRELASLLQA 405 (406)
T ss_pred EeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH------hc--------CH---HHHHHHHHHHHhh
Confidence 34455899998877653321444444444455433321 12 66 7777777777643
No 118
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=53.23 E-value=1.3e+02 Score=24.96 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=56.1
Q ss_pred HHHHHHhcCCcEEEEeCHHHHHHHHHh-hccCCccchhhchh-hhhhccC-CCCceEEEEEeCCCHHHHHHHhhcCCCC-
Q psy18086 16 AVEAVINSGKTCVLDIEVQGVQQVKRA-GGAMAGAVYVFGVQ-QVKRAGG-AMAGAVYVFVKPPSIEELETRLRGRGTE- 91 (166)
Q Consensus 16 ~V~~v~~~Gk~~vldid~~Gv~~lk~~-~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~IFI~PPS~e~Le~RL~~Rgte- 91 (166)
.|...++.|++||+|=-.-+...+.-. .++ -..-+. .-+.+-| -+.+ +++|+..| .++--+|+.+|+..
T Consensus 80 ~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~-----~~~~~~~l~~~~~~~~~PD-~ti~Ldv~-~e~al~R~~~r~~~~ 152 (208)
T COG0125 80 VIKPALKEGKVVICDRYVDSSLAYQGGGRGL-----DLDWVLALNEFAPGGLKPD-LTLYLDVP-PEVALERIRKRGELR 152 (208)
T ss_pred HHHHhhcCCCEEEECCcccHHHHhhhhccCC-----CHHHHHHHHHhccCCCCCC-EEEEEeCC-HHHHHHHHHhcCCcc
Confidence 455567889999998666555554421 111 001111 1122222 2222 56677665 67888889888643
Q ss_pred C----HHH-HHHHHHHHHHHhhcCCCCCCcccEEEEc-CCCCCCHhHHHHHHHHHHHh
Q psy18086 92 T----EDS-LRRRLDLARRDMSYGKDSLRSYGIISEL-AFFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 92 t----ee~-I~~Rl~~A~~e~~~~~~~~~~fD~vIvN-d~dl~~~e~a~~~l~~ii~~ 143 (166)
+ ++. ...++...-.++.... +. -++++| +.++ ++-.+++..++..
T Consensus 153 ~r~E~~~~~f~~kvr~~Y~~la~~~-~~---r~~vIda~~~~---e~v~~~i~~~l~~ 203 (208)
T COG0125 153 DRFEKEDDEFLEKVREGYLELAAKF-PE---RIIVIDASRPL---EEVHEEILKILKE 203 (208)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhC-CC---eEEEEECCCCH---HHHHHHHHHHHHH
Confidence 2 111 3444444323332211 11 244444 4456 6666666666654
No 119
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=52.35 E-value=81 Score=25.33 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=42.1
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCC---CCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRG---TETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHF 140 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rg---tetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~i 140 (166)
.-+++.+..|. +.+-.|+..|. .++++.+++|+.........-. . +|...|...+.+ ++.++.+...
T Consensus 107 ~d~v~~~~~~~-~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli--~-~y~~~id~~~~i---~~v~~~i~~~ 176 (178)
T COG0563 107 LDMVIELDVPE-ELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLI--E-YYSVTIDGSGEI---EEVLADILKA 176 (178)
T ss_pred cceEEeeeCCH-HHHHHHHhCccccccCCHHHHHHHHHHHHhcccchh--h-hheeeccCCCCH---HHHHHHHHHh
Confidence 45778888886 88999988874 4689999999987754321110 1 333333444455 6666655554
No 120
>PRK13974 thymidylate kinase; Provisional
Probab=51.16 E-value=1.2e+02 Score=24.42 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=35.5
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHH----HHHHHHHHHHHHhhcCCCCCCcccEEEEc-CCCCCCHhHHHHHHHHHHHh
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETED----SLRRRLDLARRDMSYGKDSLRSYGIISEL-AFFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee----~I~~Rl~~A~~e~~~~~~~~~~fD~vIvN-d~dl~~~e~a~~~l~~ii~~ 143 (166)
.+||+..| .+++.+|+..|+.+..+ +...+...+-. .|.. .+ -+..+| +.++ ++..+++..++.+
T Consensus 137 ~~i~ld~~-~~~~~~R~~~R~dD~~e~~~~~y~~~v~~~y~--~y~~-~~---~~~~Ida~~~~---eeV~~~I~~~l~~ 206 (212)
T PRK13974 137 LTFFLEIS-VEESIRRRKNRKPDRIEAEGIEFLERVAEGFA--LIAE-ER---NWKVISADQSI---ETISNEIKETLLN 206 (212)
T ss_pred EEEEEeCC-HHHHHHHHHhcccCchhhhhHHHHHHHHHHHH--HHHh-cC---CEEEEeCCCCH---HHHHHHHHHHHHH
Confidence 46777765 78899999888643322 12222222211 2332 11 233334 3467 8888888887764
No 121
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=51.10 E-value=42 Score=28.75 Aligned_cols=56 Identities=11% Similarity=0.215 Sum_probs=31.6
Q ss_pred eEEEEEeCCCHHHHH---HHhhc-CCCCCHHHHHHHHHHHHHHh-hcCCCCCCcccEEEEcC
Q psy18086 68 AVYVFVKPPSIEELE---TRLRG-RGTETEDSLRRRLDLARRDM-SYGKDSLRSYGIISELA 124 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le---~RL~~-Rgtetee~I~~Rl~~A~~e~-~~~~~~~~~fD~vIvNd 124 (166)
-+.|||.+|....++ +|... || .|.+++..++..-..+. .|-...-...|++|.++
T Consensus 117 D~~I~vd~~~e~r~~r~i~Rd~~rrG-~s~e~v~~~i~~r~~~~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 117 DFSVYLDISDEVKFAWKIQRDMAERG-HSLEDVLASIEARKPDFEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred cEEEEEECChhHHHHHHHHHHHHHhC-CCHHHHHHHHHhhchhHHHHhccccccCcEEEEcc
Confidence 378999988544433 34433 45 57888888886432222 22110011668888766
No 122
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=51.04 E-value=94 Score=24.10 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=19.4
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCC
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGT 90 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgt 90 (166)
...+|++.+| .++|++|++.|..
T Consensus 91 ~~~~v~l~a~-~~~l~~Rl~~R~~ 113 (163)
T PRK11545 91 NLSFIYLKGD-FDVIESRLKARKG 113 (163)
T ss_pred CEEEEEEECC-HHHHHHHHHhccC
Confidence 4688888886 8999999999963
No 123
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=50.34 E-value=1e+02 Score=22.80 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=31.4
Q ss_pred hcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCCC
Q psy18086 22 NSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT 90 (166)
Q Consensus 22 ~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgt 90 (166)
..|..||+|...- ....+.. +.. -+ ......+|++..| .+++.+|+..|..
T Consensus 70 ~~~~~vVid~~~~-~~~~r~~---~~~-----------~~--~~~~~~~v~l~~~-~~~~~~R~~~R~~ 120 (150)
T cd02021 70 SAGEGVVVACSAL-KRIYRDI---LRG-----------GA--ANPRVRFVHLDGP-REVLAERLAARKG 120 (150)
T ss_pred hCCCCEEEEeccc-cHHHHHH---HHh-----------cC--CCCCEEEEEEECC-HHHHHHHHHhccc
Confidence 4788999986643 2333333 110 00 0124667888875 8899999999853
No 124
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=48.85 E-value=1.4e+02 Score=26.41 Aligned_cols=101 Identities=11% Similarity=0.093 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCcEEEE---eCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCCCC
Q psy18086 15 AAVEAVINSGKTCVLD---IEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 91 (166)
Q Consensus 15 ~~V~~v~~~Gk~~vld---id~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgte 91 (166)
+-|++.+..|..+|++ +.|.-+...... ++ +.+.+.+.-+|.+..++|...|+..
T Consensus 181 ~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~---~~-------------------~~i~~~l~i~~ee~h~~RF~~R~~~ 238 (301)
T PRK04220 181 AVIERALKEGISVIIEGVHIVPGFIKEKYLE---NP-------------------NVFMFVLTLSDEEAHKARFYARARV 238 (301)
T ss_pred HHHHHHHHhCCcEEEecCCCCHHHHHHhhhc---CC-------------------CEEEEEEEECCHHHHHHHHHHHHhh
Confidence 3467778899988884 233222221112 23 4455555557899999997766533
Q ss_pred C----HH---HHHHHHHHHHHHhhcCCCCCCccc-EEEEcCCCCCCHhHHHHHHHHHHHhhh
Q psy18086 92 T----ED---SLRRRLDLARRDMSYGKDSLRSYG-IISELAFFLEYNSAAGEIFEHFGLKSS 145 (166)
Q Consensus 92 t----ee---~I~~Rl~~A~~e~~~~~~~~~~fD-~vIvNd~dl~~~e~a~~~l~~ii~~~~ 145 (166)
+ +. .+.....-.+.-++.+. .++ -+|.|. |+ +.|.+.+.+.+....
T Consensus 239 ~~r~~~~y~~~~~~ir~iq~~l~~~a~----~~~ip~I~n~-~i---~~s~~~~~~~i~~~~ 292 (301)
T PRK04220 239 SRRPAERYLKNFEIIREINDYIVEKAK----KHGVPVIENI-SI---EETVDKILEIITERL 292 (301)
T ss_pred hCCchhhHHHHHHHHHHHHHHHHHHHH----HhCCCeecCc-cH---HHHHHHHHHHHHHHH
Confidence 2 11 11111111111112222 222 247888 99 999999998876554
No 125
>PLN02924 thymidylate kinase
Probab=48.59 E-value=1.6e+02 Score=24.42 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCce-EEEEEeCCCHHHHHHHhhcCC--CC
Q psy18086 15 AAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGA-VYVFVKPPSIEELETRLRGRG--TE 91 (166)
Q Consensus 15 ~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~IFI~PPS~e~Le~RL~~Rg--te 91 (166)
..|...++.|+++|+|=-.-.........|+ ..+ .+ ..+. . +. ..| ++||+..| .++..+|...++ .|
T Consensus 91 ~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~-~~~-~~---~~~~-~-~~-~~PDlvi~Ld~~-~~~a~~R~~~~~~~~E 161 (220)
T PLN02924 91 SLMERKLKSGTTLVVDRYSYSGVAFSAAKGL-DLE-WC---KAPE-V-GL-PAPDLVLYLDIS-PEEAAERGGYGGERYE 161 (220)
T ss_pred HHHHHHHHCCCEEEEccchhHHHHHHHhcCC-CHH-HH---HHHH-h-CC-CCCCEEEEEeCC-HHHHHHHhccCccccc
Confidence 4577788899999998544422222111010 000 00 0000 0 11 134 66777764 677777765332 12
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhhhh
Q psy18086 92 TEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKSSE 146 (166)
Q Consensus 92 tee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~~~ 146 (166)
+ .+..+|+..+-.++. . . .+ ++|.++.++ ++-.+++.+++.....
T Consensus 162 ~-~~~~~rv~~~Y~~la--~--~-~~-~vIDa~~si---eeV~~~I~~~I~~~l~ 206 (220)
T PLN02924 162 K-LEFQKKVAKRFQTLR--D--S-SW-KIIDASQSI---EEVEKKIREVVLDTVQ 206 (220)
T ss_pred c-HHHHHHHHHHHHHHh--h--c-CE-EEECCCCCH---HHHHHHHHHHHHHHHH
Confidence 2 345566665544442 2 1 21 344444567 7777888887765443
No 126
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=48.25 E-value=52 Score=24.70 Aligned_cols=34 Identities=29% Similarity=0.554 Sum_probs=26.3
Q ss_pred EEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRD 106 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e 106 (166)
.+|++..| .+.+.+|+.. ++++.+++||+.-+..
T Consensus 105 ~vi~L~~~-~~~~~~R~~~---d~~~~i~~Rl~~y~~~ 138 (151)
T PF00406_consen 105 LVIFLDCP-DETLIERLSQ---DNEEVIKKRLEEYREN 138 (151)
T ss_dssp EEEEEE---HHHHHHHHHT---GSHHHHHHHHHHHHHH
T ss_pred eeeccccc-hhhhhhhccc---CCHHHHHHHHHHHHHH
Confidence 56777775 6899999886 7899999999987653
No 127
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.64 E-value=28 Score=28.64 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=40.6
Q ss_pred HHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCC
Q psy18086 16 AVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPS 77 (166)
Q Consensus 16 ~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS 77 (166)
.|-+.+..++.+++++..-+=.+.|+...|.++++++-+.++.+-+ -.||+..|+
T Consensus 89 ~ia~~lk~~k~Vvinl~~m~~~qArRivDFlaG~~~al~G~~qkVg-------~~ifL~tP~ 143 (167)
T COG1799 89 EIADYLKNRKAVVINLQRMDPAQARRIVDFLAGAVFALRGSIQKVG-------SKIFLLTPS 143 (167)
T ss_pred HHHHHHhcCceEEEEeeeCCHHHHHHHHHHhcchhhhhcccHHhhc-------ceeEEeccc
Confidence 5566789999999998877777777776667877777777666543 357777664
No 128
>PTZ00301 uridine kinase; Provisional
Probab=44.38 E-value=1.5e+02 Score=24.39 Aligned_cols=70 Identities=21% Similarity=0.073 Sum_probs=37.5
Q ss_pred EEEEEeCCCHHHHHHHhhc-----CCCCCHHHHHH-HHHHHHH-HhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHH
Q psy18086 69 VYVFVKPPSIEELETRLRG-----RGTETEDSLRR-RLDLARR-DMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFG 141 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~-----Rgtetee~I~~-Rl~~A~~-e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii 141 (166)
+.|||.+| .++...|+.. ||. +.+++.. .....+. .-.|-...-...|+||.+..+. +.++.-|...+
T Consensus 129 ~~ifvd~~-~d~~~~Rr~~Rd~~~rG~-~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~---~~~~~~~~~~~ 203 (210)
T PTZ00301 129 CLIFVDTP-LDICLIRRAKRDMRERGR-TFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDN---SVAVGVLRAKL 203 (210)
T ss_pred EEEEEeCC-hhHHHHHHHhhhHHhcCC-CHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCCCcc---hHHHHHHHHHH
Confidence 56999987 4554444332 554 5555443 3333322 1112111112679999877565 78877665555
Q ss_pred Hh
Q psy18086 142 LK 143 (166)
Q Consensus 142 ~~ 143 (166)
..
T Consensus 204 ~~ 205 (210)
T PTZ00301 204 NH 205 (210)
T ss_pred HH
Confidence 43
No 129
>COG0645 Predicted kinase [General function prediction only]
Probab=44.11 E-value=1.8e+02 Score=23.95 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=35.9
Q ss_pred HHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcCCC-CCHHHH
Q psy18086 18 EAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGT-ETEDSL 96 (166)
Q Consensus 18 ~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgt-etee~I 96 (166)
+..+.+|..+|+|--. +-.+-|...--.... ..-++.+|..+-..+++..|+..|.- .+++..
T Consensus 70 ~l~l~~G~~VVlDa~~-~r~~~R~~~~~~A~~---------------~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~ 133 (170)
T COG0645 70 ELLLSSGHSVVLDATF-DRPQERALARALARD---------------VGVAFVLIRLEAPEEVLRGRLAARKGDASDATF 133 (170)
T ss_pred HHHHhCCCcEEEeccc-CCHHHHHHHHHHHhc---------------cCCceEEEEcCCcHHHHHHHHHHhCCCcccchH
Confidence 5678999999998532 112222210001100 00246666665569999999999964 354444
Q ss_pred H
Q psy18086 97 R 97 (166)
Q Consensus 97 ~ 97 (166)
.
T Consensus 134 ~ 134 (170)
T COG0645 134 D 134 (170)
T ss_pred H
Confidence 3
No 130
>KOG3327|consensus
Probab=43.18 E-value=2.1e+02 Score=24.41 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCcEEEEeCH-HHHHHHHHhhccCCccchhhchhhh-hhccCCCCceEEEEEeCCCHHHHHHHhhcCCCC
Q psy18086 14 RAAVEAVINSGKTCVLDIEV-QGVQQVKRAGGAMAGAVYVFGVQQV-KRAGGAMAGAVYVFVKPPSIEELETRLRGRGTE 91 (166)
Q Consensus 14 ~~~V~~v~~~Gk~~vldid~-~Gv~~lk~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~IFI~PPS~e~Le~RL~~Rgte 91 (166)
.+.|.+-+++|.+||+|=-. .|+..--.. |+ + -.-+ +-+=|-..-=.++|+..| +++ ..|..++|.|
T Consensus 79 ~~~i~e~l~kg~~~ivDRY~~SGvAyS~AK-gl-~-------~dWc~~pd~gL~KPDlvlfL~v~-p~~-~a~rggfG~E 147 (208)
T KOG3327|consen 79 VSLIKEKLAKGTTLIVDRYSFSGVAYSAAK-GL-D-------LDWCKQPDVGLPKPDLVLFLDVS-PED-AARRGGFGEE 147 (208)
T ss_pred HHHHHHHHhcCCeEEEecceecchhhhhhc-CC-C-------cchhhCCccCCCCCCeEEEEeCC-HHH-HHHhcCcchh
Confidence 45788889999999997322 222211111 11 0 0000 111111111257888875 666 4566677765
Q ss_pred CH--HHHHHHHHHHHHHhhcCCCCCCcccEEEEcC-CCCCCHhHHHHHHHHHHHhhh
Q psy18086 92 TE--DSLRRRLDLARRDMSYGKDSLRSYGIISELA-FFLEYNSAAGEIFEHFGLKSS 145 (166)
Q Consensus 92 te--e~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ii~~~~ 145 (166)
-- ..++++.....+.+.... + . ...+++. ..+ +.-.+++..+++...
T Consensus 148 rye~v~fqekv~~~~q~l~r~e--~-~-~~~~vDAs~sv---e~V~~~V~~i~e~~~ 197 (208)
T KOG3327|consen 148 RYETVAFQEKVLVFFQKLLRKE--D-L-NWHVVDASKSV---EKVHQQVRSLVENVL 197 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--C-C-CeEEEecCccH---HHHHHHHHHHHHHhc
Confidence 32 345666665544443212 2 2 2234443 455 555555555555544
No 131
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=42.82 E-value=1.3e+02 Score=28.58 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=36.2
Q ss_pred eEEEEEeCCCHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHhhcCCCCCCcccEEEEcC-CCCCCHhHHHHHHHHHHHh
Q psy18086 68 AVYVFVKPPSIEELETRLRGRGTET---EDSLRRRLDLARRDMSYGKDSLRSYGIISELA-FFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~Rgtet---ee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd-~dl~~~e~a~~~l~~ii~~ 143 (166)
..+||+.+| .+++.+|. .|+-.. .++++. +. .....|. .|. ..|++|.++ .++ +++++++.+.+..
T Consensus 559 ~~~v~L~~~-~e~~~~R~-~r~L~~~~~~~~l~~-l~--~~r~~y~-~P~-~a~~~Id~~~~s~---~e~v~~Ii~~l~~ 628 (632)
T PRK05506 559 FVEVFVDTP-LEVCEARD-PKGLYAKARAGEIKN-FT--GIDSPYE-APE-NPELRLDTTGRSP---EELAEQVLELLRR 628 (632)
T ss_pred eEEEEECCC-HHHHHhhC-Ccchhhhcccccccc-cc--ccccCCC-CCC-CCeEEEeCCCCCH---HHHHHHHHHHHHH
Confidence 477888876 89999884 243211 122221 11 1112232 123 567888875 356 7777777776643
No 132
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=42.36 E-value=19 Score=25.14 Aligned_cols=17 Identities=47% Similarity=0.585 Sum_probs=14.7
Q ss_pred ccccCcHHHHHHHHhcC
Q psy18086 8 KSYMVNRAAVEAVINSG 24 (166)
Q Consensus 8 n~YGTs~~~V~~v~~~G 24 (166)
-.||.|++.|++++-+|
T Consensus 47 F~YsLSR~DvE~Ai~~G 63 (63)
T PF11341_consen 47 FPYSLSREDVEAAIFSG 63 (63)
T ss_pred ccCcCCHHHHHHHHhcC
Confidence 36999999999998766
No 133
>PRK14529 adenylate kinase; Provisional
Probab=41.61 E-value=1.6e+02 Score=24.72 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=40.4
Q ss_pred EEEEEeCCCHHHHHHHhhcCC-----------------------------------CCC-HHHHHHHHHHHHHHh-----
Q psy18086 69 VYVFVKPPSIEELETRLRGRG-----------------------------------TET-EDSLRRRLDLARRDM----- 107 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rg-----------------------------------tet-ee~I~~Rl~~A~~e~----- 107 (166)
.+|++..| .++|.+||..|. .++ +|.|++||+....+.
T Consensus 108 ~vi~l~~~-~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~ 186 (223)
T PRK14529 108 YVIEILLP-REVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLA 186 (223)
T ss_pred EEEEEECC-HHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccch
Confidence 46777765 688888887762 144 578999999886541
Q ss_pred --hcCCC-----CCCcccEEEEcC-CCCCCHhHHHHHHHHHH
Q psy18086 108 --SYGKD-----SLRSYGIISELA-FFLEYNSAAGEIFEHFG 141 (166)
Q Consensus 108 --~~~~~-----~~~~fD~vIvNd-~dl~~~e~a~~~l~~ii 141 (166)
.|-.. .+ . ++.+|. +++ ++.++++.+++
T Consensus 187 ~~~~y~~~~~~~~~-~--~~~id~~~~~---~~V~~~i~~~l 222 (223)
T PRK14529 187 AAYFFKDLAAKGST-K--YIELDGEGSI---DEIKETLLKQL 222 (223)
T ss_pred HHHHHhhcccccCC-e--EEEEECCCCH---HHHHHHHHHHh
Confidence 22221 22 1 344444 466 77777776654
No 134
>PRK09087 hypothetical protein; Validated
Probab=38.81 E-value=63 Score=26.71 Aligned_cols=17 Identities=24% Similarity=0.120 Sum_probs=9.3
Q ss_pred eEEEEEeCCCHHHHHHH
Q psy18086 68 AVYVFVKPPSIEELETR 84 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~R 84 (166)
+.++-|.||+.+.+.+-
T Consensus 145 gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 145 ATVVEIGEPDDALLSQV 161 (226)
T ss_pred CceeecCCCCHHHHHHH
Confidence 45566666665554443
No 135
>PRK06217 hypothetical protein; Validated
Probab=38.12 E-value=1.8e+02 Score=22.58 Aligned_cols=20 Identities=40% Similarity=0.401 Sum_probs=16.1
Q ss_pred EEEEEeCCCHHHHHHHhhcCC
Q psy18086 69 VYVFVKPPSIEELETRLRGRG 89 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rg 89 (166)
.+||+.+| .++...|+..|.
T Consensus 86 ~~i~Ld~~-~~~~~~Rl~~R~ 105 (183)
T PRK06217 86 LVVFLTIP-PELRLERLRLRE 105 (183)
T ss_pred EEEEEECC-HHHHHHHHHcCc
Confidence 57899886 888889988774
No 136
>PRK07429 phosphoribulokinase; Provisional
Probab=37.28 E-value=80 Score=27.96 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=30.8
Q ss_pred EEEEEeCCCHHHHH----HHhhc-CCCCCHHHHHHHHHHHHHHhh-cCCCCCCcccEEEEcC
Q psy18086 69 VYVFVKPPSIEELE----TRLRG-RGTETEDSLRRRLDLARRDMS-YGKDSLRSYGIISELA 124 (166)
Q Consensus 69 ~~IFI~PPS~e~Le----~RL~~-Rgtetee~I~~Rl~~A~~e~~-~~~~~~~~fD~vIvNd 124 (166)
+.|||.+| .++-. +|... || -+.+++..++.....+.. |-...-...|+||.|-
T Consensus 127 ~~I~Vda~-~evr~~Rri~Rd~~rrG-~s~eei~~~i~~r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 127 FKVYLDPP-EEVKIAWKIKRDMAKRG-HTYEQVLAEIEAREPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred EEEEEECC-HHHHHHHHHHHHHhhcC-CCHHHHHHHHHHhCccHhhhhcccccCCCEEEEcC
Confidence 67999987 44443 33333 44 478888888765332222 2110111679999886
No 137
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=36.22 E-value=2.3e+02 Score=25.49 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=24.9
Q ss_pred CceEEEEEeCCCHHHHHHHhhcCCCC-CHHHHHHHHH
Q psy18086 66 AGAVYVFVKPPSIEELETRLRGRGTE-TEDSLRRRLD 101 (166)
Q Consensus 66 ~~~~~IFI~PPS~e~Le~RL~~Rgte-tee~I~~Rl~ 101 (166)
....+||+..| .+++.+|..+|+.. +++.+.....
T Consensus 154 ~~~~~V~ld~p-le~~l~RN~~R~~~v~devie~m~~ 189 (340)
T TIGR03575 154 LGFCQLFLDCP-VESCLLRNKQRPVPLPDETIQLMGR 189 (340)
T ss_pred CCEEEEEEeCC-HHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 35678889887 89999999999754 4555544443
No 138
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=36.04 E-value=52 Score=21.38 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=20.5
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q psy18086 80 ELETRLRGRGTETEDSLRRRLDLARRDM 107 (166)
Q Consensus 80 ~Le~RL~~Rgtetee~I~~Rl~~A~~e~ 107 (166)
+|+..|..+|. ++++|..+++..+..+
T Consensus 15 elrd~LEe~g~-~~eeIe~kv~~~R~~L 41 (46)
T PF08312_consen 15 ELRDELEEQGY-SEEEIEEKVDELRKKL 41 (46)
T ss_dssp HHHHHHHHHT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 46777888885 9999999999987654
No 139
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=34.30 E-value=1.7e+02 Score=29.42 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=42.8
Q ss_pred cHHHHHHHH---------hcCCcEEEE----eCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHH
Q psy18086 13 NRAAVEAVI---------NSGKTCVLD----IEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIE 79 (166)
Q Consensus 13 s~~~V~~v~---------~~Gk~~vld----id~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e 79 (166)
+.+.|+++. ...|++||| |..++...|.+..+-.+ ...++||+. .+.+
T Consensus 101 ~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP------------------~~~~fIl~t-t~~~ 161 (824)
T PRK07764 101 GVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP------------------EHLKFIFAT-TEPD 161 (824)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC------------------CCeEEEEEe-CChh
Confidence 456666653 345677877 56677777777622122 256777776 3555
Q ss_pred HHHHHhhcCCC------CCHHHHHHHHHH
Q psy18086 80 ELETRLRGRGT------ETEDSLRRRLDL 102 (166)
Q Consensus 80 ~Le~RL~~Rgt------etee~I~~Rl~~ 102 (166)
.|-.-|++|.. -++++|...|..
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~ 190 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLER 190 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHH
Confidence 55555666642 467777766654
No 140
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=34.10 E-value=1.5e+02 Score=20.85 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=33.0
Q ss_pred HHHHHHHhcC-CcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHH
Q psy18086 15 AAVEAVINSG-KTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELET 83 (166)
Q Consensus 15 ~~V~~v~~~G-k~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~ 83 (166)
.-++...+.+ +++++|.|++-+..++.. ++ .+++--|-+.+.|++
T Consensus 12 ~i~~~L~~~~~~vvvid~d~~~~~~~~~~-~~-----------------------~~i~gd~~~~~~l~~ 57 (116)
T PF02254_consen 12 EIAEQLKEGGIDVVVIDRDPERVEELREE-GV-----------------------EVIYGDATDPEVLER 57 (116)
T ss_dssp HHHHHHHHTTSEEEEEESSHHHHHHHHHT-TS-----------------------EEEES-TTSHHHHHH
T ss_pred HHHHHHHhCCCEEEEEECCcHHHHHHHhc-cc-----------------------ccccccchhhhHHhh
Confidence 3456677777 699999999999999988 33 356666767777765
No 141
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=33.84 E-value=1.5e+02 Score=26.25 Aligned_cols=67 Identities=10% Similarity=0.027 Sum_probs=39.8
Q ss_pred ceEEEEEeCCCHHHHHHHhhcC---CC-----CCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGR---GT-----ETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFE 138 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~R---gt-----etee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~ 138 (166)
.+-+||+.+ |-++|.+|-.+- .- -..+.| +.-++.++.-+. ..|++|... ++ ...+|+
T Consensus 82 ~~~ilFLdA-~d~~LirRy~eTRR~HPL~~~~~~le~I----~~Er~~L~~lr~---~Ad~vIDTs-~l-----~~~~Lr 147 (284)
T PF03668_consen 82 DVRILFLDA-SDEVLIRRYSETRRRHPLSSDGSLLEAI----EKERELLEPLRE---RADLVIDTS-NL-----SVHQLR 147 (284)
T ss_pred ceEEEEEEC-ChHHHHHHHHhccCCCCCCCCCCcHHHH----HHHHHHHHHHHH---hCCEEEECC-CC-----CHHHHH
Confidence 688999998 578998886431 11 122223 222223322111 568999888 55 457788
Q ss_pred HHHHhhhhh
Q psy18086 139 HFGLKSSEI 147 (166)
Q Consensus 139 ~ii~~~~~~ 147 (166)
+.+......
T Consensus 148 ~~i~~~~~~ 156 (284)
T PF03668_consen 148 ERIRERFGG 156 (284)
T ss_pred HHHHHHhcc
Confidence 877766543
No 142
>KOG3347|consensus
Probab=33.71 E-value=53 Score=27.23 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=21.1
Q ss_pred EEEEeCCCHHHHHHHhhcCCCCCHHHHHHHH
Q psy18086 70 YVFVKPPSIEELETRLRGRGTETEDSLRRRL 100 (166)
Q Consensus 70 ~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl 100 (166)
++.++.| -++|-+||.+|| .++..|+.-+
T Consensus 96 VvVLr~~-~s~LY~RL~sRg-Y~e~Ki~eNi 124 (176)
T KOG3347|consen 96 VVVLRTP-NSVLYDRLKSRG-YSEKKIKENI 124 (176)
T ss_pred EEEEecC-chHHHHHHHHcC-CCHHHHhhhc
Confidence 3445555 689999999999 6777776543
No 143
>KOG0025|consensus
Probab=33.68 E-value=87 Score=28.55 Aligned_cols=33 Identities=39% Similarity=0.610 Sum_probs=25.6
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCC---CCHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGT---ETEDSLRRR 99 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgt---etee~I~~R 99 (166)
+.+-|.=--|++|+|.++|+.-|. .||+++..|
T Consensus 187 ktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~ 222 (354)
T KOG0025|consen 187 KTINVVRDRPNIEELKKQLKSLGATEVITEEELRDR 222 (354)
T ss_pred ceEEEeecCccHHHHHHHHHHcCCceEecHHHhcch
Confidence 556565667899999999998775 389988755
No 144
>COG1935 Uncharacterized conserved protein [Function unknown]
Probab=33.25 E-value=84 Score=24.69 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=41.0
Q ss_pred cccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHH
Q psy18086 9 SYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELE 82 (166)
Q Consensus 9 ~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le 82 (166)
+-|++...|+..+..+..-+--.+.+-...+.+. -++ + .||++|.|.+.|.
T Consensus 6 LtGIs~~vie~l~~~~~rTieiRsa~N~~tv~rl---~~G------------------D--lVFlT~~~~~Dl~ 56 (122)
T COG1935 6 LTGISRRVIESLLRNPIRTIEIRSARNLLTVLRL---HEG------------------D--LVFLTSTSLEDLT 56 (122)
T ss_pred EechhHHHHHHHHhCCceEEEEEcccchHHhhcC---CCC------------------C--EEEEehhHhhHhh
Confidence 4699999999999999888777777777777766 442 2 6899999988875
No 145
>PRK13695 putative NTPase; Provisional
Probab=33.16 E-value=1.6e+02 Score=22.53 Aligned_cols=8 Identities=13% Similarity=0.447 Sum_probs=3.8
Q ss_pred cCCcEEEE
Q psy18086 23 SGKTCVLD 30 (166)
Q Consensus 23 ~Gk~~vld 30 (166)
...++++|
T Consensus 96 ~~~~lllD 103 (174)
T PRK13695 96 EADVIIID 103 (174)
T ss_pred CCCEEEEE
Confidence 34445554
No 146
>PHA00729 NTP-binding motif containing protein
Probab=32.97 E-value=55 Score=27.82 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.3
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCCC
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRGT 90 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rgt 90 (166)
.+..+.+.|++.++|.++|++||.
T Consensus 118 R~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 118 RVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred hCcEEEEecCCHHHHHHHHHhCCC
Confidence 466677888899999999999984
No 147
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=32.95 E-value=1.7e+02 Score=28.38 Aligned_cols=80 Identities=13% Similarity=-0.014 Sum_probs=45.3
Q ss_pred eEEEEEeCCCHHH-HHHHhhcCCCCCHHHHHHHHHHHH-HHhhcCCCCCCccc--EEEEcCCCCCCHhHHHHHHHHHHHh
Q psy18086 68 AVYVFVKPPSIEE-LETRLRGRGTETEDSLRRRLDLAR-RDMSYGKDSLRSYG--IISELAFFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 68 ~~~IFI~PPS~e~-Le~RL~~Rgtetee~I~~Rl~~A~-~e~~~~~~~~~~fD--~vIvNd~dl~~~e~a~~~l~~ii~~ 143 (166)
.+=||+..+ .++ .++|...-...+.+++..-|..=+ .+. ....|...+| ++|.++ ++ -.++.++.+.+++..
T Consensus 156 ~~K~~l~A~-~~~Ra~Rr~~~~~~~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts-~~-~~~~v~~~i~~~i~~ 231 (712)
T PRK09518 156 EVRILLTAR-EEVRQARRSGQDRSETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNS-DL-DFDETLDLLIGLVED 231 (712)
T ss_pred CeEEEEECC-HHHHHHHHHHhhhcCCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECC-CC-CHHHHHHHHHHHHHh
Confidence 466889985 454 444443322245555554443221 233 3334555665 666666 33 228888888888888
Q ss_pred hhhhhhcc
Q psy18086 144 SSEIQSHR 151 (166)
Q Consensus 144 ~~~~~~~~ 151 (166)
..+.|.-.
T Consensus 232 ~~~~~~~~ 239 (712)
T PRK09518 232 AIEEQEYD 239 (712)
T ss_pred hhhhhhHH
Confidence 87776633
No 148
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=32.70 E-value=49 Score=28.35 Aligned_cols=23 Identities=9% Similarity=-0.172 Sum_probs=19.9
Q ss_pred cccEEEEcCCCCCCHhHHHHHHHHHH
Q psy18086 116 SYGIISELAFFLEYNSAAGEIFEHFG 141 (166)
Q Consensus 116 ~fD~vIvNd~dl~~~e~a~~~l~~ii 141 (166)
.+|++|.|++++ ++-..+|..++
T Consensus 203 ~~D~vI~NdGtl---eeL~~qV~~ll 225 (227)
T PHA02575 203 PGDIVITNNGTL---EELKSKILNLI 225 (227)
T ss_pred CCCEEEEcCCCH---HHHHHHHHHHh
Confidence 789999999999 88888887765
No 149
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=32.00 E-value=51 Score=28.26 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=25.1
Q ss_pred CeEEEccccccCcHHHHHH-----HHhcC-CcEEEEeCHHHH
Q psy18086 1 MNVIIYLKSYMVNRAAVEA-----VINSG-KTCVLDIEVQGV 36 (166)
Q Consensus 1 ~~~~~~gn~YGTs~~~V~~-----v~~~G-k~~vldid~~Gv 36 (166)
|++-+.| .-|+.|..+-. ..+.| |++++|+|+||-
T Consensus 1 m~ia~~g-KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n 41 (290)
T CHL00072 1 MKLAVYG-KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHD 41 (290)
T ss_pred CeEEEEC-CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCc
Confidence 6666677 88888766432 33578 588899999974
No 150
>PLN02318 phosphoribulokinase/uridine kinase
Probab=31.36 E-value=1.5e+02 Score=29.27 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=29.6
Q ss_pred eEEEEEeCCCHHHHHHHhh----cCCCCCHHHHHHHHHHHHH--HhhcCCCCCCcccEEEEcC
Q psy18086 68 AVYVFVKPPSIEELETRLR----GRGTETEDSLRRRLDLARR--DMSYGKDSLRSYGIISELA 124 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~----~Rgtetee~I~~Rl~~A~~--e~~~~~~~~~~fD~vIvNd 124 (166)
-+.|||.+|.-..|.+|+. .||. +.+++..+...... ...|-...-...|++|+|+
T Consensus 178 DlkIFVDtdvDirL~RRI~RD~~eRGr-s~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~ 239 (656)
T PLN02318 178 DLRVSVTGGVHFDLVKRVLRDIQRAGQ-EPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNK 239 (656)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHhCC-CHHHHHHHHHHhhcchHHHHhCcchhcceEEEecC
Confidence 3789999764445666654 4565 55555444433222 1122221112568888884
No 151
>KOG3354|consensus
Probab=31.03 E-value=3.2e+02 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.2
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCC
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRG 89 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rg 89 (166)
...+||+.. |.|++.+||.+|.
T Consensus 118 ~l~fi~l~~-s~evi~~Rl~~R~ 139 (191)
T KOG3354|consen 118 QLHFILLSA-SFEVILKRLKKRK 139 (191)
T ss_pred eEEEeeeec-cHHHHHHHHhhcc
Confidence 346777777 8999999999884
No 152
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=30.25 E-value=83 Score=24.78 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=28.5
Q ss_pred EEEEEeCCCHHHHHHHhh----cCCCCCHHHHHHHHHHHHH-HhhcCCCCCCcccEEEEcC
Q psy18086 69 VYVFVKPPSIEELETRLR----GRGTETEDSLRRRLDLARR-DMSYGKDSLRSYGIISELA 124 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~----~Rgtetee~I~~Rl~~A~~-e~~~~~~~~~~fD~vIvNd 124 (166)
+.|||.+|.--.|++|+. .||. +.+++..+....+. +..|-...-...|++|.+.
T Consensus 129 ~~ifld~~~~~~l~Rri~RD~~~rG~-~~~~~~~~~~~~~~~~~~~I~p~~~~ADivi~~~ 188 (194)
T PF00485_consen 129 LKIFLDADEDLRLERRIQRDVAERGR-SPEEVIAQYERVRPGYERYIEPQKERADIVIPSG 188 (194)
T ss_dssp EEEEEEE-HHHHHHHHHHHHHHHS-S--HHHHHHHHHTHHHHHHHCTGGGGGG-SEEEESC
T ss_pred eEEEecccHHHHHHHHhhhhccccCC-cceeEEEEeecCChhhhhheeccccccEEEECCC
Confidence 689999864334666653 4674 66666666664433 2222111111788998776
No 153
>TIGR02563 cas_Csy4 CRISPR-associated protein, Csy4 family. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.
Probab=27.95 E-value=74 Score=26.21 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=25.8
Q ss_pred EEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHH
Q psy18086 70 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLA 103 (166)
Q Consensus 70 ~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A 103 (166)
-++.+ ||.+-+++|+.+|+.+++|+.+.++...
T Consensus 100 r~~~~-~s~~r~~rR~~~r~~~~~e~~~~~~~~~ 132 (185)
T TIGR02563 100 RKQTK-SSAARLRRRLERRQGINDEEARPRAPDK 132 (185)
T ss_pred EEecc-CCHHHHHHHHHHhcCCchHHHhhhhhhh
Confidence 34444 4899999999999999999888887643
No 154
>PHA02757 hypothetical protein; Provisional
Probab=27.89 E-value=60 Score=23.20 Aligned_cols=25 Identities=16% Similarity=0.555 Sum_probs=21.9
Q ss_pred ccCcHHHHHHHHhcCCcEEEEeCHH
Q psy18086 10 YMVNRAAVEAVINSGKTCVLDIEVQ 34 (166)
Q Consensus 10 YGTs~~~V~~v~~~Gk~~vldid~~ 34 (166)
-|+.-+.++++++..|.|++++|..
T Consensus 31 C~v~Qe~~~eildkdK~CiiE~de~ 55 (75)
T PHA02757 31 CGVDQEKANEILDKDKACIIEIDED 55 (75)
T ss_pred cCccHHHHHHHhcccceEEEEEcCC
Confidence 3667788899999999999999986
No 155
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=27.25 E-value=1.2e+02 Score=25.76 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=27.5
Q ss_pred ccccCcHHHHHHHHhcCC------cEEEEeCHHHHHHHHHh
Q psy18086 8 KSYMVNRAAVEAVINSGK------TCVLDIEVQGVQQVKRA 42 (166)
Q Consensus 8 n~YGTs~~~V~~v~~~Gk------~~vldid~~Gv~~lk~~ 42 (166)
-||||+.+.+..++++|- -|-|..|...+.++=..
T Consensus 123 LyhGTs~~~l~~I~~~Gi~Pm~R~~VHLS~~~~~A~~vg~r 163 (211)
T COG1859 123 LYHGTSPEFLPSILEEGLKPMKRRHVHLSADYETAKQVGLR 163 (211)
T ss_pred EEecCChhhhHHHHHhcCccccCceEEecCCHHHHHHHhhc
Confidence 578999999999999985 45567777777777555
No 156
>PRK14530 adenylate kinase; Provisional
Probab=27.06 E-value=2e+02 Score=23.00 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=16.9
Q ss_pred EEEEEeCCCHHHHHHHhhcCCC
Q psy18086 69 VYVFVKPPSIEELETRLRGRGT 90 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rgt 90 (166)
.+||+..| .+++.+||.+|..
T Consensus 108 ~vI~Ld~~-~~~l~~Rl~~R~~ 128 (215)
T PRK14530 108 VVLYLDVS-EEELVDRLTGRRV 128 (215)
T ss_pred EEEEEeCC-HHHHHHHHhCCCc
Confidence 57778876 7899999998864
No 157
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=26.46 E-value=2.4e+02 Score=23.25 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=12.5
Q ss_pred EEEeCCCHHHHHHHhhcC
Q psy18086 71 VFVKPPSIEELETRLRGR 88 (166)
Q Consensus 71 IFI~PPS~e~Le~RL~~R 88 (166)
+++.|.|.+.|.+.+..-
T Consensus 316 ~~~~~~d~~~l~~~i~~l 333 (367)
T cd05844 316 LLVPEGDVAALAAALGRL 333 (367)
T ss_pred EEECCCCHHHHHHHHHHH
Confidence 455566889898877643
No 158
>PLN02199 shikimate kinase
Probab=26.39 E-value=4.7e+02 Score=23.37 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=44.4
Q ss_pred EEEccccccCcHHHHHHHHhc-CCcEEEEeCHHHHHH--------HHHhhccCCccchhhch--------------hhhh
Q psy18086 3 VIIYLKSYMVNRAAVEAVINS-GKTCVLDIEVQGVQQ--------VKRAGGAMAGAVYVFGV--------------QQVK 59 (166)
Q Consensus 3 ~~~~gn~YGTs~~~V~~v~~~-Gk~~vldid~~Gv~~--------lk~~~~~~~~~~~~~~~--------------~~~~ 59 (166)
+..-|.. |+.|..|-..+++ =...++|+|.---+. +-.. ++.+ .|+. .+|-
T Consensus 105 I~LIG~~-GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~---~GE~--~FR~~E~e~L~~L~~~~~~VIS 178 (303)
T PLN02199 105 MYLVGMM-GSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVH---HGEN--FFRGKETDALKKLSSRYQVVVS 178 (303)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHH---hCHH--HHHHHHHHHHHHHHhcCCEEEE
Confidence 3444444 8888888888875 345677877533222 1122 1111 1111 1233
Q ss_pred hccCCC---------CceEEEEEeCCCHHHHHHHhhc
Q psy18086 60 RAGGAM---------AGAVYVFVKPPSIEELETRLRG 87 (166)
Q Consensus 60 ~~~~~~---------~~~~~IFI~PPS~e~Le~RL~~ 87 (166)
--||+. ...++||+..| +|+|.+||..
T Consensus 179 tGGG~V~~~~n~~~L~~G~vV~Ldas-~E~l~~RL~~ 214 (303)
T PLN02199 179 TGGGAVIRPINWKYMHKGISIWLDVP-LEALAHRIAA 214 (303)
T ss_pred CCCcccCCHHHHHHHhCCeEEEEECC-HHHHHHHHhh
Confidence 334433 34478999986 9999999985
No 159
>PHA01630 putative group 1 glycosyl transferase
Probab=26.33 E-value=2.9e+02 Score=24.06 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=31.2
Q ss_pred EeCCCHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHh
Q psy18086 73 VKPPSIEELETRLRGRGTE-TEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLK 143 (166)
Q Consensus 73 I~PPS~e~Le~RL~~Rgte-tee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~ 143 (166)
+.||+.+.+.+.+.+--.+ ++++.+.++..+..... + .| ++ +...+++.+++++
T Consensus 276 ~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~--~----~f--------s~---~~ia~k~~~l~~~ 330 (331)
T PHA01630 276 FLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYR--E----NY--------SY---NAIAKMWEKILEK 330 (331)
T ss_pred ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--H----hC--------CH---HHHHHHHHHHHhc
Confidence 4567888877666543322 34566666666544332 1 12 66 7777777777643
No 160
>COG4639 Predicted kinase [General function prediction only]
Probab=25.63 E-value=3.9e+02 Score=22.12 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCcEEEEeCH---HHHHHH---HHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhcC
Q psy18086 15 AAVEAVINSGKTCVLDIEV---QGVQQV---KRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGR 88 (166)
Q Consensus 15 ~~V~~v~~~Gk~~vldid~---~Gv~~l---k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~R 88 (166)
+.++.-++.|+.-|+|-.. .-.+.+ -+.+|+ .+++|.+..| .+.+.+|-+.|
T Consensus 60 ~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~---------------------~~~~ivfdtp-~~~c~aRNk~~ 117 (168)
T COG4639 60 KQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGY---------------------KIYAIVFDTP-LELCLARNKLR 117 (168)
T ss_pred HHHHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHhCC---------------------eEEEEEEeCC-HHHHHHHhhcc
Confidence 4556778899999998654 333333 344453 4566666655 78888885444
Q ss_pred CCC-CHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcC
Q psy18086 89 GTE-TEDSLRRRLDLARRDMSYGKDSLRSYGIISELA 124 (166)
Q Consensus 89 gte-tee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd 124 (166)
.+. .++-|.+.+... ..+.-.. .|-++..+.
T Consensus 118 ~Rqv~~~VI~r~~r~~-~~~l~~e----~~~~~~~~~ 149 (168)
T COG4639 118 ERQVPEEVIPRMLRET-IDLLEKE----PFRYVWTLS 149 (168)
T ss_pred chhCCHHHHHHHHHHH-HhhccCC----CeEEEEecC
Confidence 333 455555554442 2222222 455666665
No 161
>PRK06547 hypothetical protein; Provisional
Probab=25.03 E-value=3.3e+02 Score=21.54 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=23.1
Q ss_pred eEEEEEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q psy18086 68 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLAR 104 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A~ 104 (166)
.++||+..| .++-.+|+.+|..+ ....-.|-..++
T Consensus 119 v~~I~ld~~-~~vr~~R~~~Rd~~-~~~~~~~w~~~e 153 (172)
T PRK06547 119 VLTVWLDGP-EALRKERALARDPD-YAPHWEMWAAQE 153 (172)
T ss_pred EEEEEEECC-HHHHHHHHHhcCch-hhHHHHHHHHHH
Confidence 379999986 78888888888543 333344444443
No 162
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=24.67 E-value=4.5e+02 Score=25.33 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=37.6
Q ss_pred ceEEEEEeCCCHHHHHHHhh---cCCC-CCHHHHHHHHHH-HHHHhhcCCCCCCc--ccEEEEcCCCCCCHhHHHHHHHH
Q psy18086 67 GAVYVFVKPPSIEELETRLR---GRGT-ETEDSLRRRLDL-ARRDMSYGKDSLRS--YGIISELAFFLEYNSAAGEIFEH 139 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~---~Rgt-etee~I~~Rl~~-A~~e~~~~~~~~~~--fD~vIvNd~dl~~~e~a~~~l~~ 139 (166)
-.+=||+..+..+--++|.. ++|. .+-+++..-+.. =+.+......|... .+++|.|+ ++ --++.++++.+
T Consensus 574 a~~kifl~a~~~~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts-~~-~~~~v~~~i~~ 651 (661)
T PRK11860 574 AALKVFLTASAEARAERRYKQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNS-DL-TIEQAVAQVLD 651 (661)
T ss_pred CCeEEEEECChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECC-CC-CHHHHHHHHHH
Confidence 34779999864444555544 3443 245555444432 12244333334422 34666677 43 11666666666
Q ss_pred HHH
Q psy18086 140 FGL 142 (166)
Q Consensus 140 ii~ 142 (166)
++.
T Consensus 652 ~i~ 654 (661)
T PRK11860 652 WWQ 654 (661)
T ss_pred HHH
Confidence 664
No 163
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=23.67 E-value=2e+02 Score=23.84 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=40.7
Q ss_pred cCcHHHHHHHHh-cCCcEEEEeCHHHHHHHHHhhccCC--ccchhhch---hhhhhccCCCCceEEEEEeCC
Q psy18086 11 MVNRAAVEAVIN-SGKTCVLDIEVQGVQQVKRAGGAMA--GAVYVFGV---QQVKRAGGAMAGAVYVFVKPP 76 (166)
Q Consensus 11 GTs~~~V~~v~~-~Gk~~vldid~~Gv~~lk~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~IFI~PP 76 (166)
|+.-=.+|++-+ ..+.+++|.|..+++.+++....+. ..+.+++. ...+..|+.. ..-+||+-||
T Consensus 53 GSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~-~FDlVflDPP 123 (187)
T COG0742 53 GSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTRE-PFDLVFLDPP 123 (187)
T ss_pred CccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCC-cccEEEeCCC
Confidence 566566777766 6678899999999999987632222 22333322 2233344442 2458999999
No 164
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=23.39 E-value=1.1e+02 Score=21.23 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=24.6
Q ss_pred EEeCCCHHHHHHHhhcCCCCCHHHHHHHHHHH
Q psy18086 72 FVKPPSIEELETRLRGRGTETEDSLRRRLDLA 103 (166)
Q Consensus 72 FI~PPS~e~Le~RL~~Rgtetee~I~~Rl~~A 103 (166)
|..+.++++|+++|.+.. .+.++|..+|...
T Consensus 38 f~~~~~i~~le~~L~G~~-~~~~~i~~~l~~~ 68 (86)
T PF10437_consen 38 FFGPEDIEELEEALIGCP-YDREAIKEALNSV 68 (86)
T ss_dssp BS-CCCHHHHHHHHTTCB-SSHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHHhcC-CCHHHHHHHHHHh
Confidence 344567999999999874 6889999998876
No 165
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=23.34 E-value=3.7e+02 Score=21.12 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=18.6
Q ss_pred ceEEEEEeCCCHHHHHHHhhcCC
Q psy18086 67 GAVYVFVKPPSIEELETRLRGRG 89 (166)
Q Consensus 67 ~~~~IFI~PPS~e~Le~RL~~Rg 89 (166)
...+||+..| .+++.+|+.+|.
T Consensus 99 ~~~~v~l~a~-~~~l~~Rl~~R~ 120 (176)
T PRK09825 99 NVHFLWLDGD-YETILARMQRRA 120 (176)
T ss_pred CEEEEEEeCC-HHHHHHHHhccc
Confidence 4678888875 899999999996
No 166
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.13 E-value=2e+02 Score=24.17 Aligned_cols=72 Identities=10% Similarity=-0.050 Sum_probs=47.6
Q ss_pred CHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhhhhhhhccCCccc
Q psy18086 77 SIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKSSEIQSHRNPNLQ 156 (166)
Q Consensus 77 S~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~~~~~~~~~~~~~ 156 (166)
+.+...++.. .+| .++..||+.|+.-.+.+-.-+-.||=||.-+ ++ ++.|.+|.+-+............++-
T Consensus 55 np~~Ii~~~E-~~T---~sl~~Rl~Aa~k~a~aGy~Vg~~~~PIi~~e-gW---~e~Y~~l~~~l~~~l~~~~~~dl~~e 126 (199)
T TIGR00620 55 NADYVIKNFE-PGT---SPLDKRIEAAVKVAKAGYPLGFIIAPIYIHE-GW---KEGYRNLLEKLDEALPQDLRHDITFE 126 (199)
T ss_pred CHHHHHHHhc-CCC---CCHHHHHHHHHHHHHcCCeEEEEeeceEeeC-Ch---HHHHHHHHHHHHHhCCHhhhcCeEEE
Confidence 3455555554 344 4589999999765443332233677777788 99 99999999999877765554444433
No 167
>PF00836 Stathmin: Stathmin family; InterPro: IPR000956 Stathmin is a ubiquitous phosphorylated protein thought to act as an intracellular relay for diverse regulatory pathways [], functioning through a variety of secondary messengers. Its phosphorylation and gene expression are regulated throughout development [] and in response to extracellular signals regulating cell proliferation, differentiation and function []. Stathmin, and the related proteins SCG10 and XB3, contain a N-terminal domain (XB3 contains an additional N-terminal hydrophobic region), a 78 amino acid coiled-coil region, and a short C-terminal domain.; GO: 0035556 intracellular signal transduction; PDB: 3RYC_E 3RYH_E 3N2K_E 1Z2B_E 1SA1_E 3HKD_E 3DU7_E 3HKC_E 3HKB_E 3HKE_E ....
Probab=23.10 E-value=9 Score=30.58 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=25.2
Q ss_pred hhhhhccCCCCceEEEEEeCCCHHHHHHHhh---cCCCCCHHHHHHHHHHHHH
Q psy18086 56 QQVKRAGGAMAGAVYVFVKPPSIEELETRLR---GRGTETEDSLRRRLDLARR 105 (166)
Q Consensus 56 ~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~---~Rgtetee~I~~Rl~~A~~ 105 (166)
++-+++|| .++=|.+.|||....-.++. .+..-|-++|+..|..|+.
T Consensus 7 ~~~kr~sG---~aFEVIL~pps~~~~p~~~~s~pk~k~~SleeIqkKLeAAEE 56 (140)
T PF00836_consen 7 ELNKRASG---QAFEVILKPPSPDSPPPRPLSPPKKKDPSLEEIQKKLEAAEE 56 (140)
T ss_dssp EEEEETTE---EEEEEEES--SSSSS--SS--SS------HSCTTSHHHHHHH
T ss_pred hhcccCCC---cceEeeeCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Confidence 34466777 57778899998653222321 2234578889999998864
No 168
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=22.30 E-value=52 Score=21.09 Aligned_cols=14 Identities=36% Similarity=0.850 Sum_probs=11.5
Q ss_pred CCCHHHHHHHhhcC
Q psy18086 75 PPSIEELETRLRGR 88 (166)
Q Consensus 75 PPS~e~Le~RL~~R 88 (166)
||++|+|-++|..|
T Consensus 20 PPDLdel~r~l~~k 33 (42)
T PF12221_consen 20 PPDLDELFRKLQDK 33 (42)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999998877654
No 169
>PTZ00088 adenylate kinase 1; Provisional
Probab=22.26 E-value=4.6e+02 Score=21.81 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=17.2
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHH
Q psy18086 84 RLRGRGTETEDSLRRRLDLARRD 106 (166)
Q Consensus 84 RL~~Rgtetee~I~~Rl~~A~~e 106 (166)
+|..|..++++.|++||+..+.+
T Consensus 169 ~l~~R~DD~~e~i~~Rl~~Y~~~ 191 (229)
T PTZ00088 169 KLQKRSDDTEEIVAHRLNTYEST 191 (229)
T ss_pred cccCCCCCCHHHHHHHHHHHHHH
Confidence 34455567899999999988654
No 170
>PF12909 DUF3832: Protein of unknown function (DUF3832); InterPro: IPR024308 This domain found in bacteria and Acanthamoeba polyphaga mimivirus (APMV) L591 protein has no known function. In Q0AZ30 from SWISSPROT and other uncharacterised proteins this domain is found C-terminal, while the N terminus shows remote homology to the bacterial toxin/antitoxin 'addiction module' (PF12910 from PFAM).; PDB: 3K6Q_C.
Probab=22.24 E-value=1.1e+02 Score=22.54 Aligned_cols=46 Identities=20% Similarity=0.042 Sum_probs=34.2
Q ss_pred cccEEEEcCCCCCCHhHHHHHHHHHHHhhh----------hhhhccCCcccchhhhhccc
Q psy18086 116 SYGIISELAFFLEYNSAAGEIFEHFGLKSS----------EIQSHRNPNLQLRRRIFLKK 165 (166)
Q Consensus 116 ~fD~vIvNd~dl~~~e~a~~~l~~ii~~~~----------~~~~~~~~~~~~~~~~~~~~ 165 (166)
.+|.+.+.+ ++ ++|.++|.+.+.... ..-+-|.+|.+..|||.+.+
T Consensus 25 ~ldi~~~g~-T~---eeA~~~lie~l~dYAedy~~~~~~~~~apnR~~H~pYv~rI~l~~ 80 (89)
T PF12909_consen 25 ELDIYANGP-TL---EEAIEDLIEDLRDYAEDYMNRFPLFYNAPNRRHHYPYVRRILLCD 80 (89)
T ss_dssp CGTEEEEES-SH---HHHHHHHHHHHHHHHHHHHHTHHHHHTSTTTGGGHHHHHHHHHSS
T ss_pred CeeEEecCC-CH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHhC
Confidence 577666666 88 999988888775432 34667889999999998763
No 171
>PRK00886 2-phosphosulfolactate phosphatase; Provisional
Probab=22.14 E-value=1.3e+02 Score=25.60 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=30.6
Q ss_pred EccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHh
Q psy18086 5 IYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRA 42 (166)
Q Consensus 5 ~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~ 42 (166)
+.|-.||-|..++....-.||.+|| ..++|.+.+.+.
T Consensus 77 i~GFd~gNSP~e~~~~~~~gk~lVl-tTtNGT~al~~a 113 (240)
T PRK00886 77 IEGFDLGNSPLEYTPEVVEGKRLFM-TTTNGTRALKRV 113 (240)
T ss_pred CCCCCCCCCHHHHHhhccCCCEEEE-ECCcHHHHHHHh
Confidence 4566799999999876678999888 678899999876
No 172
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=22.02 E-value=6.1e+02 Score=24.17 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=37.3
Q ss_pred eEEEEEeCCCHHHHHHH----hhcCCC--CCHHHHHHHHHHHH-HHhhcCCCCCC-ccc-EEEEcCC-CCCCHhHHHHHH
Q psy18086 68 AVYVFVKPPSIEELETR----LRGRGT--ETEDSLRRRLDLAR-RDMSYGKDSLR-SYG-IISELAF-FLEYNSAAGEIF 137 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~R----L~~Rgt--etee~I~~Rl~~A~-~e~~~~~~~~~-~fD-~vIvNd~-dl~~~e~a~~~l 137 (166)
.+-||+..| .+++.+| +..|+- .+.+++..-+..=. .+......|.. ..| ++|.+++ ++ ++.++++
T Consensus 422 dlKIfL~As-~evRa~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsi---eeVv~~I 497 (512)
T PRK13477 422 ELKIFLTAS-VEERARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSI---EEVVDKI 497 (512)
T ss_pred CEEEEEECC-HHHHHHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCH---HHHHHHH
Confidence 577899985 7888776 344553 23445544443211 12211111211 224 5666552 45 7777777
Q ss_pred HHHHHh
Q psy18086 138 EHFGLK 143 (166)
Q Consensus 138 ~~ii~~ 143 (166)
.+.+.+
T Consensus 498 l~~i~~ 503 (512)
T PRK13477 498 IDLYRD 503 (512)
T ss_pred HHHHHH
Confidence 777643
No 173
>PRK14100 2-phosphosulfolactate phosphatase; Provisional
Probab=21.95 E-value=1.2e+02 Score=26.02 Aligned_cols=38 Identities=13% Similarity=-0.003 Sum_probs=31.1
Q ss_pred EEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHh
Q psy18086 4 IIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRA 42 (166)
Q Consensus 4 ~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~ 42 (166)
.+.|-.||-|..++....-.|+.+|| ..++|.+.+++.
T Consensus 69 ~i~GFd~gNSP~e~~~~~~~gk~lVl-tTtNGT~~l~~~ 106 (237)
T PRK14100 69 KPPGFDLGNSPVEALEAQVAGRTVVM-STTNGTKAAHLA 106 (237)
T ss_pred cCCCCCCCCCHHHHHhcccCCCEEEE-ECCcHHHHHHHH
Confidence 35677899999998777779999888 678899998764
No 174
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=21.87 E-value=85 Score=25.54 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=14.1
Q ss_pred EEEEEeCCCHHHHHHHhhcCC
Q psy18086 69 VYVFVKPPSIEELETRLRGRG 89 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~~Rg 89 (166)
+.|||.+| .++..+|+.+|.
T Consensus 133 ~~Ifvd~~-~d~~~~Rr~~R~ 152 (187)
T cd02024 133 IRYFLRVP-YETCKRRREART 152 (187)
T ss_pred ceeEecCC-HHHHHHHHHHcC
Confidence 57888876 677666766664
No 175
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=21.38 E-value=2.1e+02 Score=22.64 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCcEEEEeCH
Q psy18086 15 AAVEAVINSGKTCVLDIEV 33 (166)
Q Consensus 15 ~~V~~v~~~Gk~~vldid~ 33 (166)
..++..+++|+.+++|...
T Consensus 84 ~~~~~a~~~~~nii~E~tl 102 (199)
T PF06414_consen 84 KLIEYAIENRYNIIFEGTL 102 (199)
T ss_dssp HHHHHHHHCT--EEEE--T
T ss_pred HHHHHHHHcCCCEEEecCC
Confidence 3567788999999998644
No 176
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=21.27 E-value=1.3e+02 Score=27.08 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=41.8
Q ss_pred eEEEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCC
Q psy18086 2 NVIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPS 77 (166)
Q Consensus 2 ~~~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS 77 (166)
.+...+..||-+..-++..+....+-+--+|......+++. +.+ ++..||+-+|+
T Consensus 96 ~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~---l~~------------------~t~~v~~Esps 150 (386)
T PF01053_consen 96 HIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAA---LRP------------------NTKLVFLESPS 150 (386)
T ss_dssp EEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHH---HCT------------------TEEEEEEESSB
T ss_pred ceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhh---ccc------------------cceEEEEEcCC
Confidence 35667888999988888877776666777788777888877 432 68889998774
No 177
>smart00485 XPGN Xeroderma pigmentosum G N-region. domain in nucleases
Probab=21.20 E-value=1.2e+02 Score=21.53 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=11.5
Q ss_pred ceEEEE--EeCCC-HHHHHHHhhcC
Q psy18086 67 GAVYVF--VKPPS-IEELETRLRGR 88 (166)
Q Consensus 67 ~~~~IF--I~PPS-~e~Le~RL~~R 88 (166)
.|++|| ..||. .+++++|...|
T Consensus 72 ~PifVFDG~~~~~K~~t~~~R~~~r 96 (99)
T smart00485 72 KPIFVFDGKPPPLKSETLAKRRERR 96 (99)
T ss_pred eEEEEECCCCchhhHHHHHHHHHHH
Confidence 688888 33443 33445554443
No 178
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=21.06 E-value=3.7e+02 Score=22.01 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=11.4
Q ss_pred EEEEEeCCCHHHHHHHhh
Q psy18086 69 VYVFVKPPSIEELETRLR 86 (166)
Q Consensus 69 ~~IFI~PPS~e~Le~RL~ 86 (166)
+.|||.+| .+++..||.
T Consensus 131 ~~ifvd~~-~~~~~~rl~ 147 (220)
T cd02025 131 FSIYVDAD-EDDIEKWYI 147 (220)
T ss_pred eEEEEECC-HHHHHHHHH
Confidence 67999998 466544443
No 179
>PLN02348 phosphoribulokinase
Probab=21.04 E-value=2e+02 Score=26.58 Aligned_cols=34 Identities=9% Similarity=0.287 Sum_probs=21.1
Q ss_pred eEEEEEeCCCHHHHHHHh----hcCCCCCHHHHHHHHHH
Q psy18086 68 AVYVFVKPPSIEELETRL----RGRGTETEDSLRRRLDL 102 (166)
Q Consensus 68 ~~~IFI~PPS~e~Le~RL----~~Rgtetee~I~~Rl~~ 102 (166)
-+.|||.+|....++.|+ .+|| -|.+++..++..
T Consensus 184 D~~IyVd~~~dvrl~RRI~RD~~eRG-~S~EeV~~~i~a 221 (395)
T PLN02348 184 DFSIYLDISDDVKFAWKIQRDMAERG-HSLESIKASIEA 221 (395)
T ss_pred cEEEEEECCHHHHHHHHHHhhHhhcC-CCHHHHHHHHHh
Confidence 378999987333333332 3456 488888888763
No 180
>PF04029 2-ph_phosp: 2-phosphosulpholactate phosphatase; InterPro: IPR005238 2-phosphosulpholactate phosphatase (ComB; 3.1.3.71 from EC) is a magnesium-dependent acid phosphatase that catalyzes the second step in coenzyme M (CoM; 2-mercaptoethanesulphonic acid) biosynthesis, namely, the hydrolysis of (2R)-2-phospho-3-sulpholactate to yield (2R)-3-sulpholactate and phosphate. CoM is an essential cofactor that acts as the terminal methyl carrier in methanogenesis []. Homologues of ComB have been identified in all available cyanobacterial genome sequences and in genomes from phylogenetically diverse bacteria and archaea. However, many of these organisms lack homologues of other CoM biosynthetic genes. ComB has a complex alpha/beta topology. The monomer is composed of two domains thought to be related by a common ancestral gene, plus a C-terminal helical and beta-hairpin region []. ; GO: 0000287 magnesium ion binding, 0050532 2-phosphosulfolactate phosphatase activity, 0019295 coenzyme M biosynthetic process; PDB: 2YZO_B 2YYV_A 3HKZ_G 1VR0_C 2Z0J_G.
Probab=20.61 E-value=1.3e+02 Score=25.40 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=28.6
Q ss_pred EEccccccCcHHHHHHHHhcCCcEEEEeCHHHHHHHHHh
Q psy18086 4 IIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRA 42 (166)
Q Consensus 4 ~~~gn~YGTs~~~V~~v~~~Gk~~vldid~~Gv~~lk~~ 42 (166)
.+.|-.||-|..++....-.||.+|| ..++|.+.+.+.
T Consensus 70 ~i~GFd~gNSP~e~~~~~v~gk~lVl-tTtNGT~al~~a 107 (233)
T PF04029_consen 70 KIEGFDLGNSPLELTREDVKGKRLVL-TTTNGTRALHKA 107 (233)
T ss_dssp --TTSSB-S-GGGHHHHHHTTSEEEE-E-CCHHHHHHHC
T ss_pred cCCCCCCCCCHHHHHhcccCCCEEEE-ECCcHHHHHHHh
Confidence 45677899999999987778999998 677899999987
No 181
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=20.52 E-value=6.5e+02 Score=23.51 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=16.8
Q ss_pred EEEEeCCCHHHHHHHhhcCCCC
Q psy18086 70 YVFVKPPSIEELETRLRGRGTE 91 (166)
Q Consensus 70 ~IFI~PPS~e~Le~RL~~Rgte 91 (166)
+||+..| .+++.+|+..+++.
T Consensus 95 vI~L~as-~e~l~~Rl~~~~RP 115 (488)
T PRK13951 95 TLFLYAP-PEVLMERVTTENRP 115 (488)
T ss_pred EEEEECC-HHHHHHHhccCCCC
Confidence 6888875 89999999877653
No 182
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.19 E-value=3.3e+02 Score=24.41 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=30.2
Q ss_pred HHHHhcCCcEEEEeCHHHHHHHHHhhccCCccchhhchhhhhhccCCCCceEEEEEeCCCHHHHHHHhhc
Q psy18086 18 EAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRG 87 (166)
Q Consensus 18 ~~v~~~Gk~~vldid~~Gv~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IFI~PPS~e~Le~RL~~ 87 (166)
+..-..|.-|++|.+-+.+.+.-+. .| .+|+| +.+||+.-.-.
T Consensus 153 ~~~~~~g~~vilD~Sg~~L~~~L~~------------------------~P--~lIKP-N~~EL~~~~g~ 195 (310)
T COG1105 153 RILRQQGAKVILDTSGEALLAALEA------------------------KP--WLIKP-NREELEALFGR 195 (310)
T ss_pred HHHHhcCCeEEEECChHHHHHHHcc------------------------CC--cEEec-CHHHHHHHhCC
Confidence 3344669999999999887765554 33 45665 89999986543
No 183
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=20.03 E-value=1.1e+02 Score=21.91 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhcCCCCCCcccEEEEcCCCCCCHhHHHHHHHHHHHhh
Q psy18086 76 PSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKS 144 (166)
Q Consensus 76 PS~e~Le~RL~~Rgtetee~I~~Rl~~A~~e~~~~~~~~~~fD~vIvNd~dl~~~e~a~~~l~~ii~~~ 144 (166)
|+++.|++++.. +++++..|+..|...+.-+ +. +.|++.|.+++...
T Consensus 6 ~~~~al~~~~a~----~P~D~~ar~~lA~~~~~~g---------------~~---e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 6 PDIAALEAALAA----NPDDLDARYALADALLAAG---------------DY---EEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT----------------H---HHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHc----CCCCHHHHHHHHHHHHHCC---------------CH---HHHHHHHHHHHHhC
Confidence 568888888874 5667888888887666443 44 77777777777654
Done!