RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18086
(166 letters)
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 94.9 bits (237), Expect = 4e-25
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 22/96 (22%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
++ VE + +GK +L+I+VQG +QVK+ AV +F+
Sbjct: 80 KSPVEEALAAGKDVLLEIDVQGARQVKKK----------------------FPDAVSIFI 117
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSY 109
PPS+EELE RLR RGT++E+ + RRL A++++++
Sbjct: 118 LPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAH 153
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 92.1 bits (230), Expect = 8e-24
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 22/96 (22%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
R+ VE + +GK +L+I+ QG +QVK+ M AV +F+
Sbjct: 85 RSPVEEALAAGKDVLLEIDWQGARQVKKK----------------------MPDAVSIFI 122
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSY 109
PPS+EELE RLRGRGT++E+ + RRL AR ++++
Sbjct: 123 LPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAH 158
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 87.6 bits (217), Expect = 5e-21
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 22/98 (22%)
Query: 16 AVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKP 75
AVE V +SGK C+LDI+VQG + V+ + A+++F+ P
Sbjct: 218 AVEVVTDSGKRCILDIDVQGARSVRASS----------------------LEAIFIFICP 255
Query: 76 PSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDS 113
PS+EELE RLR RGTETE+ +++RL A ++ GK S
Sbjct: 256 PSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSS 293
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 84.1 bits (209), Expect = 7e-21
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 22/96 (22%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
R VE + GK +LDI+VQG QVK+ M AV +F+
Sbjct: 83 REPVEQALAEGKDVILDIDVQGALQVKKK----------------------MPNAVSIFI 120
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSY 109
PPS+EELE RL+GRGT++E+ + RRL+ A++++S+
Sbjct: 121 LPPSLEELERRLKGRGTDSEEVIARRLENAKKEISH 156
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 76.2 bits (188), Expect = 6e-18
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 22/101 (21%)
Query: 9 SYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGA 68
Y ++ A+E + SGK C+LD+++QGV+Q+++A
Sbjct: 78 YYGTSKEAIEQIAESGKICILDVDIQGVKQLRKA----------------------ELSP 115
Query: 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSY 109
+ VF+KPPS++ L+ RL+ RGTE E+ + +R++ A ++ +
Sbjct: 116 ISVFIKPPSLKVLQRRLKRRGTEQEEKINKRMEAAEQEFQH 156
>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues. Active enzymes
catalyze ATP-dependent phosphorylation of GMP to GDP.
Structure resembles that of adenylate kinase. So-called
membrane-associated guanylate kinase homologues (MAGUKs)
do not possess guanylate kinase activities; instead at
least some possess protein-binding functions.
Length = 174
Score = 73.9 bits (182), Expect = 4e-17
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 22/99 (22%)
Query: 9 SYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGA 68
Y ++ + V GK C+LDI+ QGV+Q+++A
Sbjct: 68 YYGTSKETIRQVAEKGKHCLLDIDPQGVKQLRKA----------------------QLYP 105
Query: 69 VYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDM 107
+ +F+ PPS EELE RLR RGTET + +++RL A+++
Sbjct: 106 IVIFIAPPSSEELERRLRQRGTETSERIQKRLAAAQKEA 144
>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional.
Length = 206
Score = 58.6 bits (142), Expect = 4e-11
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 22/103 (21%)
Query: 5 IYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGA 64
+Y Y V +A V + SG+ ++ ++VQG +KR
Sbjct: 84 VYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRL---------------------- 121
Query: 65 MAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDM 107
+ AV++F+ PPS++EL RL R TE+ + L RRL A ++
Sbjct: 122 VPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLEL 164
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 50.6 bits (122), Expect = 1e-08
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 10 YMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVF 53
Y ++AAVE + GK +L+I+VQG +QVK+ + AV +F
Sbjct: 76 YGTSKAAVEEALAEGKIVILEIDVQGARQVKK---SYPDAVSIF 116
>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional.
Length = 186
Score = 47.7 bits (113), Expect = 3e-07
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 21/92 (22%)
Query: 10 YMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAV 69
Y +A +E G++ ++DI+VQG + +K K V
Sbjct: 80 YGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKE-----------------KFPERI----V 118
Query: 70 YVFVKPPSIEELETRLRGRGTETEDSLRRRLD 101
+F++PPS EE E RL RGT++E+S+ +R++
Sbjct: 119 TIFIEPPSEEEWEERLIHRGTDSEESIEKRIE 150
>gnl|CDD|165451 PHA03180, PHA03180, helicase-primase primase subunit; Provisional.
Length = 1071
Score = 30.2 bits (68), Expect = 0.62
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 50 VYVFGVQQVKRAGGAMAGAVYVFVKPP--SIEELETRLRGRGTETEDSLRRRLDLARRDM 107
VY G+ + K+A G + + + P + + ++L + D DL RDM
Sbjct: 552 VYRIGMSKGKQAFGVLTADCWERIIPSPGTFKAHLSKLGMSEGLSTD------DLIARDM 605
Query: 108 SYGKDSLRSYGIISELAFF 126
+ RS+G + EL +
Sbjct: 606 FITSEVERSFGNVQELPYI 624
>gnl|CDD|227112 COG4771, FepA, Outer membrane receptor for ferrienterochelin and
colicins [Inorganic ion transport and metabolism].
Length = 699
Score = 29.3 bits (66), Expect = 0.97
Identities = 15/86 (17%), Positives = 31/86 (36%)
Query: 40 KRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRR 99
K+ G G+V + Q + G + P ++L RL G + ++
Sbjct: 164 KKVGDKWHGSVTLDTNLQEHKKEGDTYQTNFYLSGPLIDDKLGLRLYGSLAKRQEDDVDI 223
Query: 100 LDLARRDMSYGKDSLRSYGIISELAF 125
A G++ + + I L++
Sbjct: 224 NTTAAGRTPAGREGVNNKDINGRLSW 249
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 28.9 bits (65), Expect = 1.6
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRD 106
KP S EEL L G E ++LRRRL RD
Sbjct: 33 KPASREELAVELNIEGEEQLEALRRRLRAMERD 65
>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase.
Length = 505
Score = 28.3 bits (63), Expect = 2.0
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 75 PPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAG 134
PP EE++ RL R +TE+ ++ RL + Y K++ S++ ++ N
Sbjct: 137 PPESEEIKARLITRPDDTEEKVKARLQI------YKKNAEAILSTYSDIMVKIDGNRPKE 190
Query: 135 EIFEHFGLKSSEIQ 148
+FE S+IQ
Sbjct: 191 VVFEEISSLLSQIQ 204
>gnl|CDD|223816 COG0745, OmpR, Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription].
Length = 229
Score = 27.6 bits (62), Expect = 2.5
Identities = 17/66 (25%), Positives = 20/66 (30%), Gaps = 11/66 (16%)
Query: 60 RAGGAMAGAVYVFVKPPSIEELETR----LRGRGTETEDSLRR-------RLDLARRDMS 108
R G AGA KP S EL R LR + LD R ++
Sbjct: 87 RVLGLEAGADDYLTKPFSPRELLARLRALLRRNAGASRAEASEVLVFGDLTLDPDTRTVT 146
Query: 109 YGKDSL 114
L
Sbjct: 147 LNGREL 152
>gnl|CDD|214688 smart00483, POLXc, DNA polymerase X family. includes vertebrate
polymerase beta and terminal
deoxynucleotidyltransferases.
Length = 334
Score = 27.3 bits (61), Expect = 4.0
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 98 RRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFGLKSSEIQSHRN 152
RR ++ + D Y E FL+ S +IF+H GL E RN
Sbjct: 286 RRYATSKFKLML--DGHELYDKTKEK--FLKVESEE-DIFDHLGLPYIE-PEERN 334
>gnl|CDD|222716 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal
domain. This family is found at the very C-terminal of
60 ribosomal L4 proteins.
Length = 80
Score = 26.0 bits (58), Expect = 4.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 142 LKSSEIQSH-RNPNLQLRRRIFLKK 165
+ S EIQS R P + +RR+ KK
Sbjct: 19 INSDEIQSVLRAPKKKAKRRVVQKK 43
>gnl|CDD|146221 pfam03465, eRF1_3, eRF1 domain 3. The release factor eRF1
terminates protein biosynthesis by recognising stop
codons at the A site of the ribosome and stimulating
peptidyl-tRNA bond hydrolysis at the peptidyl
transferase centre. The crystal structure of human eRF1
is known. The overall shape and dimensions of eRF1
resemble a tRNA molecule with domains 1, 2, and 3 of
eRF1 corresponding to the anticodon loop, aminoacyl
acceptor stem, and T stem of a tRNA molecule,
respectively. The position of the essential GGQ motif at
an exposed tip of domain 2 suggests that the Gln residue
coordinates a water molecule to mediate the hydrolytic
activity at the peptidyl transferase centre. A conserved
groove on domain 1, 80 A from the GGQ motif, is proposed
to form the codon recognition site. This family also
includes other proteins for which the precise molecular
function is unknown. Many of them are from
Archaebacteria. These proteins may also be involved in
translation termination but this awaits experimental
verification.
Length = 100
Score = 26.0 bits (58), Expect = 5.5
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 28/94 (29%)
Query: 51 YVFGVQQVKRAGGAMAGAVYVFVKPPSIEEL---ETRLRGRGTETEDSLRRRLDLARRDM 107
V+GV++V +A GAV E L + LR R T + + ++ A
Sbjct: 22 AVYGVEEVLKA--LEMGAV---------ETLLISDELLRSRDVATRNKIEWLVENAE--- 67
Query: 108 SYGKDSLRSYGIISELAFFLEYNSAAGEIFEHFG 141
G I+S+ S GE + FG
Sbjct: 68 ESGGKVE----IVSDE-------SEEGEQLKGFG 90
>gnl|CDD|221365 pfam11995, DUF3490, Domain of unknown function (DUF3490). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 160
amino acids in length. This domain is found associated
with pfam00225. This domain is found associated with
pfam00225. This domain has two conserved sequence
motifs: EVE and ESA.
Length = 162
Score = 26.6 bits (59), Expect = 5.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 94 DSLRRRLDLARR------DMSYGKDSLRSYGIISELAFFLEYNSAAGEIFE 138
+S RRRL LA + DM + ++S ++++L F+E A+ E+F
Sbjct: 108 NSKRRRLQLANKLWSNPKDMEHVRESA---SLVAKLVGFVEQGLASKEMFG 155
>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional.
Length = 184
Score = 26.6 bits (59), Expect = 6.3
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 83 TRL--RGRGTETEDSLRRRLDLARRD 106
RL RGR +TE+ +RRRL++ R
Sbjct: 123 ERLLARGRKDDTEEVIRRRLEVYREQ 148
>gnl|CDD|238088 cd00156, REC, Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the
sensor partner in a two-component systems; contains a
phosphoacceptor site that is phosphorylated by histidine
kinase homologs; usually found N-terminal to a DNA
binding effector domain; forms homodimers.
Length = 113
Score = 25.6 bits (57), Expect = 7.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 63 GAMAGAVYVFVKPPSIEELETRLR 86
AGA KP S EEL R+R
Sbjct: 87 ALKAGADDYLTKPFSPEELLARIR 110
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 26.4 bits (59), Expect = 7.8
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 10 YMVNRAAVEAVINSGKTCVLDIEVQGV 36
+ + AVE +++ + + GV
Sbjct: 75 GLCDEEAVEFIVSEAPEAIEWLIDLGV 101
>gnl|CDD|203025 pfam04472, DUF552, Protein of unknown function (DUF552). Family
of uncharacterized proteins.
Length = 73
Score = 25.1 bits (56), Expect = 8.1
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVK 59
V+ +SY + +A+ + GK ++++ Q +R +AGAVY G +
Sbjct: 2 VVAEPRSYEDAQEIADALRD-GKIVIVNLTRLEKDQARRILDFLAGAVYALGGDIQR 57
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR). This
family consists of several mammalian alpha helical
coiled-coil rod HCR proteins. The function of HCR is
unknown but it has been implicated in psoriasis in
humans and is thought to affect keratinocyte
proliferation.
Length = 739
Score = 26.6 bits (58), Expect = 9.6
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 78 IEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLR 115
+ E+ETRLR + ++TE RRL+ ARR+ + SLR
Sbjct: 580 VAEVETRLREQLSDTE----RRLNEARREHAKAVVSLR 613
>gnl|CDD|216717 pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolate cyclo-ligase
family. 5-formyltetrahydrofolate cyclo-ligase or
methenyl-THF synthetase EC:6.3.3.2 catalyzes the
interchange of 5-formyltetrahydrofolate (5-FTHF) to
5-10-methenyltetrahydrofolate, this requires ATP and
Mg2+. 5-FTHF is used in chemotherapy where it is
clinically known as Leucovorin.
Length = 182
Score = 25.8 bits (57), Expect = 9.9
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 95 SLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSAA 133
LR++L RR +S + + S + +L F+ A
Sbjct: 3 ELRKQLLAKRRALSEEERAAASRALHQKLPSFVGAQKAK 41
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.379
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,825,676
Number of extensions: 840275
Number of successful extensions: 962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 49
Length of query: 166
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 76
Effective length of database: 6,945,742
Effective search space: 527876392
Effective search space used: 527876392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)