RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18086
(166 letters)
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 107 bits (271), Expect = 3e-30
Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 22/100 (22%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
+ AV AV + CVLD+++QGV+ +K+ +Y+FV
Sbjct: 85 KEAVRAVQAMNRICVLDVDLQGVRSIKKT----------------------DLCPIYIFV 122
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDS 113
+PPS++ LE RLR R TETE+SL +RL AR DM K+
Sbjct: 123 QPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEP 162
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 106 bits (268), Expect = 6e-30
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 21/107 (19%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
A+V+ V SGKTC+LDI++QGV+ VK A ++F+
Sbjct: 82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPEL---------------------NARFLFI 120
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGII 120
PPS+E+L+ RL GRGTETE+S+ +RL A+ +++Y + I+
Sbjct: 121 APPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIV 167
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 104 bits (261), Expect = 1e-28
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 20/107 (18%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
++ + + GK C+ ++ + GV+Q+K + + +Y+FV
Sbjct: 93 KSEYDLAVGEGKICLFEMNINGVKQLKESK--------------------HIQDGIYIFV 132
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGII 120
KPPSI+ L RL+ R TE + + +R+ R+M +Y I+
Sbjct: 133 KPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIV 179
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 102 bits (257), Expect = 6e-28
Identities = 20/98 (20%), Positives = 46/98 (46%), Gaps = 20/98 (20%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
++ + K C+ ++ + GV+Q+K++ + A+Y+F+
Sbjct: 104 KSEYDKAKEQNKICLFEMNINGVKQLKKSTH--------------------IKNALYIFI 143
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGK 111
KPPS + L +RL R TE ++ +++R++ ++
Sbjct: 144 KPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEAN 181
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 101 bits (255), Expect = 7e-28
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 22/99 (22%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
V+ ++ G L+IEV+G +QV++ A+++F+
Sbjct: 87 VQYVKDTMDEGHDVFLEIEVEGAKQVRKK----------------------FPDALFIFL 124
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKD 112
PPS+E L RL GRGTE+++ ++ R++ AR+++
Sbjct: 125 APPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNL 163
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 101 bits (254), Expect = 1e-27
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 22/99 (22%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
VE + +G L+IEVQG QV++A M +++F+
Sbjct: 89 LEYVEEKLAAGVDIFLEIEVQGAMQVRKA----------------------MPEGIFIFL 126
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKD 112
PP + EL+ R+ GRGTE+ + + R++ A++++
Sbjct: 127 TPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMAS 165
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 101 bits (254), Expect = 1e-27
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 22/96 (22%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
V A +G ++++++ G + +K+ M AV VF+
Sbjct: 102 AQPVRAAAATGVPVLIEVDLAGARAIKKT----------------------MPEAVTVFL 139
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSY 109
PPS ++L+ RL GRGTET D ++RRLD AR +++
Sbjct: 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAA 175
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 88.3 bits (220), Expect = 1e-22
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 22/99 (22%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
+ V + +G+ +L+I+ QG +Q++ A+ +F+
Sbjct: 87 KDWVLRQLKAGRDVLLEIDWQGARQIREL----------------------FPPALSIFI 124
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKD 112
PPSIE L RL R + + +RL LAR +M++ K+
Sbjct: 125 LPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKE 163
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 88.8 bits (221), Expect = 1e-22
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 22/99 (22%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
R A+E V+ +G LDI+ QG QQ+++ M A +F+
Sbjct: 98 REAIEQVLATGVDVFLDIDWQGAQQIRQK----------------------MPHARSIFI 135
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKD 112
PPS EL+ RLRGRG ++E+ + +R+ A +MS+ +
Sbjct: 136 LPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAE 174
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 84.2 bits (209), Expect = 7e-21
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
R +E ++ G + +L I+ QG + V +F+
Sbjct: 108 RKNLEDNVDKGVSTLLVIDWQGAFKFMEMMRE---------------------HVVSIFI 146
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKD 112
PPS+EEL RL GR + + + RL A ++S+ +
Sbjct: 147 MPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEA 185
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 82.1 bits (203), Expect = 1e-19
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 22/99 (22%)
Query: 10 YMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAV 69
Y + A+V V GK C+LD+ +++++ A V
Sbjct: 175 YGTSVASVREVAEKGKHCILDVSGNAIKRLQVA----------------------QLYPV 212
Query: 70 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMS 108
VF+KP S++ + R E R ++
Sbjct: 213 AVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFG 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 77.2 bits (191), Expect = 2e-18
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 22/80 (27%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
V + K +LDIE Q ++ V+ A VF+
Sbjct: 100 FETVHQIHKQNKIAILDIEPQTLKIVRT----------------------AELSPFIVFI 137
Query: 74 KPPSIEELETRLRGRGTETE 93
P L+ ++E
Sbjct: 138 APTDQGTQTEALQQLQKDSE 157
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 73.7 bits (182), Expect = 3e-17
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 31/98 (31%)
Query: 14 RAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFV 73
+ + G +LD+E Q ++ ++ A VF+
Sbjct: 86 LETIRKIHEQGLIAILDVEPQALKVLRT----------------------AEFAPFVVFI 123
Query: 74 KPPSIEELETRLRGRGTETEDSLRRRLDLARR-DMSYG 110
P+I G ++SL+R + +Y
Sbjct: 124 AAPTIT--------PGLNEDESLQRLQKESDILQRTYA 153
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 74.4 bits (183), Expect = 8e-17
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 25/99 (25%)
Query: 10 YMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAV 69
Y + +V V GK C+LD+ V++++ A +
Sbjct: 180 YGTSVQSVREVAEQGKHCILDVSANAVRRLQA----------------------AHLHPI 217
Query: 70 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMS 108
+F++P S+E + TE+ R+ D A +
Sbjct: 218 AIFIRPRSLENVL---EINKRITEEQARKAFDRATKLEQ 253
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 64.5 bits (156), Expect = 7e-13
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 26/102 (25%)
Query: 10 YMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAV 69
Y + +V V GK C+LD+ V++++ A + +
Sbjct: 606 YGTSVQSVREVAEQGKHCILDVSANAVRRLQAA--------------HLH--------PI 643
Query: 70 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR-DMSYG 110
+F++P S+E + TE+ R+ D A + + +
Sbjct: 644 AIFIRPRSLENVL---EINKRITEEQARKAFDRATKLEQEFT 682
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 60.6 bits (146), Expect = 9e-12
Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 23/105 (21%)
Query: 8 KSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAG 67
S ++ V + K +LD+ ++++
Sbjct: 182 PSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYY---------------------- 219
Query: 68 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR-DMSYGK 111
+ VF P S L+ + + S RR A++
Sbjct: 220 PIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSH 264
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 60.6 bits (146), Expect = 1e-11
Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 23/107 (21%)
Query: 7 LKSYMVNRAAVEAVINSGKTCVLDIE-VQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAM 65
L + + + + VLD + + Q+ + A
Sbjct: 212 LAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLA-------------------- 251
Query: 66 AGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKD 112
+ V+VK S + L+ ++ RG L ++ A + +
Sbjct: 252 --PIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPE 296
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 56.8 bits (136), Expect = 3e-10
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 22/98 (22%)
Query: 8 KSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAG 67
S ++ ++ +I+ K +LD+ V ++ A
Sbjct: 265 SSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWY---------------------- 302
Query: 68 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR 105
+ VF+ P S + ++T E+ S R+ + + +
Sbjct: 303 PIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHK 340
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 56.0 bits (134), Expect = 5e-10
Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 22/98 (22%)
Query: 8 KSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAG 67
S ++ ++ +I+ K +LD+ V ++ A
Sbjct: 273 SSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWY---------------------- 310
Query: 68 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARR 105
+ VF+ P S + ++T E+ S R+ + + +
Sbjct: 311 PIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHK 348
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.017
Identities = 28/164 (17%), Positives = 46/164 (28%), Gaps = 66/164 (40%)
Query: 34 QGVQQVKRAGGAMAGAVY-VFGV-QQV-KRAGGAMAGAVYVF-----VK--PPSIEELET 83
QG Q+ G M +Y Q V RA Y F V P ++
Sbjct: 1624 QGSQEQ----G-MGMDLYKTSKAAQDVWNRADNHF-KDTYGFSILDIVINNPVNLTIHFG 1677
Query: 84 RLRGR----------------GTETEDSLRRRLDLARRDMSYGKDS-------------- 113
+G+ G + + + ++ ++ +
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 114 ---------LRSYGIISELAFF----L-EYNSA----AGEI-FE 138
L+S G+I A F L EY +A A + E
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEY-AALASLADVMSIE 1780
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.1
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 21/43 (48%)
Query: 77 SIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGI 119
++++L+ L+ L Y DS + I
Sbjct: 21 ALKKLQASLK---------L------------YADDSAPALAI 42
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier
protein FA structural genomics, PSI, protein structure
initiative; NMR {Nostoc SP} PDB: 2afe_A
Length = 88
Score = 27.0 bits (60), Expect = 1.4
Identities = 12/67 (17%), Positives = 31/67 (46%)
Query: 73 VKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEYNSA 132
++P S+E++++ L + + D +D+ +Y +S ++ ++ L +L
Sbjct: 7 IQPASVEDIQSWLIDQFAQQLDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELN 66
Query: 133 AGEIFEH 139
IF +
Sbjct: 67 PVLIFNY 73
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein,
ALPH-beta sandwich, winged-helix, helix helix, DNA
binding protein; HET: DNA MSE; 1.50A {Thermotoga
maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Length = 225
Score = 27.8 bits (63), Expect = 1.6
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 73 VKPPSIEELETRLRG---RGTETEDSLRR----RLDLARR 105
KP + EL R+R R +E++ + LD A +
Sbjct: 102 PKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATK 141
>1w25_A Stalked-cell differentiation controlling protein; two-component
system, ggdef domain, cyclic dinucleotide, cyclic-digmp;
HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1
c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Length = 459
Score = 27.8 bits (62), Expect = 1.6
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 60 RAGGAMAGAVYVFVKPPSIEELETRLRG--RGTETEDSLRRRLDLARRDMSY 109
R G +GA KP L R+R R D LR+R RR
Sbjct: 90 RIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVI 141
Score = 27.8 bits (62), Expect = 1.8
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 66 AGAVYVFVKPPSIEELETRLRGR------GTETEDSLRRRLDLARRD 106
G + +P +EL R++ + ++L L+LA D
Sbjct: 245 IGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAVTD 291
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 27.2 bits (61), Expect = 2.3
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 67 GAVY-VFVKPPSIEELETRLRGRGTETEDSLRRRLD 101
G +Y + PP EE+ +RL R +TE+ ++ RL+
Sbjct: 136 GKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLE 171
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 27.1 bits (61), Expect = 2.3
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 79 EELETRLRGRGTE--TEDSLRRRLD 101
E L RL+GRG T+D + R+
Sbjct: 138 EVLLERLKGRGRADDTDDVILNRMK 162
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0
junctions, AQP0, lens MIP, lipid-protein interac
membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries}
SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Length = 263
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 61 AGGAMAGAVYVFVKPPSIEELETRLRG-RGTETEDSLRRRLDLARR 105
G + +Y F+ P ++ + RL +GT +S +
Sbjct: 210 IGAGLGSLLYDFLLFPRLKSVSERLSILKGTRPSESNGQPEVTGEP 255
>1z3e_A Regulatory protein SPX; bacterial transcription regulation,
disulfide stress; 1.50A {Bacillus subtilis} SCOP:
c.47.1.12 PDB: 3gfk_A 3ihq_A
Length = 132
Score = 26.4 bits (59), Expect = 3.4
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 75 PPSIEELETRLRGRGTETEDSLRRR------LDLARRDMS 108
P SI+E++ LR T++ + R L++ M
Sbjct: 37 PLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMP 76
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 26.3 bits (59), Expect = 4.1
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 79 EELETRLRGRGTE------TEDSLRRRLD 101
E + RL RG E+++++RL+
Sbjct: 124 ETMTQRLLKRGETSGRVDDNEETIKKRLE 152
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 26.6 bits (59), Expect = 4.3
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 61 AGGAMAGAVYVFVKPPSIEELETRLRG-RGTETEDSLRRRLDLARR 105
G A+A +Y F+ P +L R++ + E+ D+ R
Sbjct: 220 IGAALAVLIYDFILAPRSSDLTDRVKVWTSGQVEEYDLDADDINSR 265
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional
crystal, electron diffraction, electron microscopy,
membrane protein; HET: PEE; 2.80A {Rattus norvegicus}
PDB: 2d57_A
Length = 301
Score = 26.6 bits (59), Expect = 4.4
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 61 AGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSL 114
G +AGA+Y +V P +E + + +++ + L
Sbjct: 217 IGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETEDL 270
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
nucleotide-binding, transferase, structural genomics;
1.80A {Thermus thermophilus}
Length = 186
Score = 26.3 bits (59), Expect = 4.4
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 79 EELETRLRGRGTE------TEDSLRRRLD 101
EEL R+ R E+++RRRL+
Sbjct: 117 EELVRRILRRAELEGRSDDNEETVRRRLE 145
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG,
structural genomics structure initiative; 2.20A
{Corynebacterium glutamicum}
Length = 87
Score = 25.5 bits (56), Expect = 4.7
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 3 VIIYLKSYMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAG 62
V + L S+ + A + G V D+ + ++ +R AG + + K
Sbjct: 8 VPVELHSFEDAQVIGGAFRD-GDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQK--- 63
Query: 63 GAMAGAVYVFVKPPSIE 79
+ + V P
Sbjct: 64 --IDSVTFAVV-PELSN 77
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single
chain FV, immune system; 2.67A {Homo sapiens}
Length = 143
Score = 26.0 bits (58), Expect = 4.8
Identities = 4/26 (15%), Positives = 8/26 (30%), Gaps = 2/26 (7%)
Query: 58 VKRAGGAMAGAVYVFVKPPSIEELET 83
+K A A + P + +
Sbjct: 104 IKAAADDDDKAGWSH--PQFEKGGGS 127
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water
transport, X-RAY diffraction, lipid, phosphatidylserine,
PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo
sapiens}
Length = 266
Score = 26.5 bits (59), Expect = 4.9
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 61 AGGAMAGAVYVFVKPPSIEELETRLRGRGTETED 94
G +A +Y ++ P+ L R+ E
Sbjct: 213 VGAVLAAILYFYLLFPNSLSLSERVAIIKGTYEP 246
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 26.0 bits (58), Expect = 5.0
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 6/29 (20%)
Query: 79 EELETRLRGRGTE------TEDSLRRRLD 101
+ + RL T ++ +RL+
Sbjct: 127 DTMTNRLLQMSRSSLPVDDTTKTIAKRLE 155
>3bre_A Probable two-component response regulator; protein-nucleotide
complex, signaling protein; HET: C2E; 2.40A {Pseudomonas
aeruginosa} PDB: 3i5a_A*
Length = 358
Score = 26.2 bits (58), Expect = 5.6
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 66 AGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAF 125
AGA VK P EL R+R + + +L++R + R + L + ++ L
Sbjct: 114 AGANDYLVKLPDAIELVARIR-YHSRSYIALQQRDEAYRALRESQQQLLETNLVLQRLMN 172
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 26.2 bits (58), Expect = 6.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 70 YVFVKPPSIEELETRLRGRGTETE 93
Y V E ++T LR R E+
Sbjct: 56 YEPVTSGLFEYVDTLLRARSPESS 79
>3l78_A Regulatory protein SPX; transcription, transcriptional factor,
disulfide bond, redox-active center, transcription
regulati; 1.90A {Streptococcus mutans}
Length = 120
Score = 25.2 bits (56), Expect = 6.2
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 75 PPSIEELETRLRGRGTETEDSLRRR------LDLARRDMS 108
P S +EL L TED + R LD+ ++S
Sbjct: 36 PLSRDELLKILSYTENGTEDIISTRSKVFQKLDIDVDELS 75
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA
binding domain, phosphorylation; 1.58A {Mycobacterium
tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Length = 233
Score = 25.9 bits (58), Expect = 6.5
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 11/46 (23%)
Query: 70 YVFVKPPSIEELETRLR-------GRGTETEDSLRR---RLDLARR 105
Y+ VKP + EL R++ T + +++ +D+ R
Sbjct: 105 YL-VKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGR 149
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
membrane protein, baculovirus expression system,
glycoprote membrane; 10.00A {Rattus norvegicus}
Length = 340
Score = 25.9 bits (57), Expect = 7.1
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 61 AGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSL 114
G +AGA+Y +V P +E + + +++ + L
Sbjct: 256 IGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETEDL 309
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich,
fibronecti receptor, cell adhesion-immune system
complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB:
3vi4_A*
Length = 632
Score = 26.0 bits (56), Expect = 7.7
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 23 SGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFG------VQQVKRAGGAMAGAVYVF 72
+G + + G + R G ++ + G G V+VF
Sbjct: 332 AGIEPTPTLTLTGHDEFGRFGSSLTPLGDLDQDGYNDVAIGAPFGGETQQGVVFVF 387
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 25.6 bits (57), Expect = 8.2
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 79 EELETRLRGRGTE------TEDSLRRRLD 101
+ + RL RG +S+++R +
Sbjct: 132 DIMLERLLERGKTSGRSDDNIESIKKRFN 160
>3q9v_A DNA-binding response regulator; response regulator protein, DNA
binding protein; 1.60A {Deinococcus radiodurans}
Length = 133
Score = 24.8 bits (55), Expect = 9.9
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Query: 67 GAVYVFVKPPSIEEL-------ETRLRGRGTETEDSLRR---RLDLARRDMSYG 110
G+ + S E L + G+ +SL LD +R ++Y
Sbjct: 2 GSSHHHHHHSSGENLYFEGSHMASMTGGQQMGRSESLSMGDLTLDPQKRLVTYK 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.379
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,615,893
Number of extensions: 158766
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 65
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)