RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18086
(166 letters)
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 37.6 bits (86), Expect = 3e-04
Identities = 21/51 (41%), Positives = 36/51 (70%)
Query: 70 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGII 120
++F+ PPS+E+L+ RL GRGTETE+S+ +RL A+ +++Y + I+
Sbjct: 117 FLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIV 167
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 35.6 bits (81), Expect = 0.001
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 22/103 (21%)
Query: 10 YMVNRAAVEAVINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAV 69
Y +R A+E V+ +G LDI+ QG QQ+++ M A
Sbjct: 80 YGTSREAIEQVLATGVDVFLDIDWQGAQQIRQK----------------------MPHAR 117
Query: 70 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKD 112
+F+ PPS EL+ RLRGRG ++E+ + +R+ A +MS+ +
Sbjct: 118 SIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAE 160
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 34.2 bits (77), Expect = 0.003
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 68 AVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKD 112
AV VF+ PPS ++L+ RL GRGTET D ++RRLD AR +++ D
Sbjct: 116 AVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGD 160
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 33.0 bits (74), Expect = 0.008
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 55 VQQVKRAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKD 112
+Q V+ +Y+FV+PPS++ LE RLR R TETE+SL +RL AR DM K+
Sbjct: 100 LQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKE 157
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain
{Caulobacter crescentus [TaxId: 155892]}
Length = 139
Score = 31.0 bits (69), Expect = 0.028
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 60 RAGGAMAGAVYVFVKPPSIEELETRLRG--RGTETEDSLRRRLDLARR 105
R G +GA KP L R+R R D LR+R RR
Sbjct: 90 RIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRR 137
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 28.4 bits (62), Expect = 0.45
Identities = 12/93 (12%), Positives = 24/93 (25%), Gaps = 3/93 (3%)
Query: 70 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEY 129
Y ++ P E + RG G T+ + + + +
Sbjct: 35 YKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGT---AAVVRSYIE 91
Query: 130 NSAAGEIFEHFGLKSSEIQSHRNPNLQLRRRIF 162
+ G + L + + R R F
Sbjct: 92 HKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQF 124
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 27.4 bits (59), Expect = 0.91
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 70 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSY 109
+ + PS+E L+ G E +D R+++
Sbjct: 37 FRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTL 76
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54
(NtrC1), N-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 137
Score = 26.5 bits (58), Expect = 0.97
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 66 AGAVYVFVKPPSIEELETRL-----RGRGTETEDSLRRRLDL 102
GA KP +EE+E + + + + LRR DL
Sbjct: 93 MGAYDFLTKPCMLEEIELTINKAIEHRKLRKENELLRREKDL 134
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver
domain {Caulobacter crescentus [TaxId: 155892]}
Length = 153
Score = 26.6 bits (58), Expect = 1.1
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 60 RAGGAMAGAVYVFVKPPSIEELETRLRG--RGTETEDSLRRRLDLARR 105
G + +P +EL R++ + D LR LD +
Sbjct: 100 MVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLE 147
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial
phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId:
1148]}
Length = 144
Score = 26.6 bits (58), Expect = 1.2
Identities = 2/27 (7%), Positives = 8/27 (29%)
Query: 60 RAGGAMAGAVYVFVKPPSIEELETRLR 86
K ++++L ++
Sbjct: 101 VIASYELHVNCYLTKSRNLKDLFKMVQ 127
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator
TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 120
Score = 26.1 bits (57), Expect = 1.4
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 66 AGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLD 101
GA KP + EL R++ +L R+D
Sbjct: 93 MGADDYVTKPLELRELVVRVK--------NLLWRID 120
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial
phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Length = 149
Score = 25.9 bits (56), Expect = 2.1
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 7/45 (15%)
Query: 60 RAGGAMAGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLAR 104
VKP I+ L ++ ++ LD+
Sbjct: 107 IEICYSYSISSYIVKPLEIDRLTETVQTF-------IKYWLDIVV 144
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Length = 249
Score = 25.9 bits (56), Expect = 2.2
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 50 VYVFGVQQVKRAGGAMAGAVYVFVKPPSIEELETRLR 86
++F V G A+A +Y F+ P +L R++
Sbjct: 211 HWIFWVGPF--IGAALAVLIYDFILAPRSSDLTDRVK 245
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein
ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 121
Score = 25.4 bits (55), Expect = 2.2
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 60 RAGGAMAGAVYVFVKPPSIEELETRLR 86
+ G GA KP + EL R R
Sbjct: 88 KILGLEIGADDYITKPFNPRELTIRAR 114
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 119
Score = 25.4 bits (55), Expect = 2.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 66 AGAVYVFVKPPSIEELETRLR 86
AGA KP I EL+ RLR
Sbjct: 92 AGADDYLSKPFGIGELQARLR 112
>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 25.2 bits (55), Expect = 2.5
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 67 GAVYVFVKPPSIE-----------ELETRLRGRGTETEDSLRRRLD 101
G+V F+KP ++ LE RG G ++LR L
Sbjct: 2 GSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRAILL 47
>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon
constant domain 3, CH3-epsilon {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 25.0 bits (54), Expect = 2.8
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 69 VYVFVKPPSIEEL 81
V ++ PS +L
Sbjct: 1 VSAYLSRPSPFDL 13
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 25.8 bits (55), Expect = 3.0
Identities = 11/93 (11%), Positives = 23/93 (24%), Gaps = 5/93 (5%)
Query: 70 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISELAFFLEY 129
Y ++ P +E+ R G E + ++ + G +
Sbjct: 35 YSEIRLPIVEQTPLFKRAIG---EVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIE 91
Query: 130 NSAAGEIFEHFGLKSSEIQSHRNPNLQLRRRIF 162
+ + L + R R F
Sbjct: 92 H--GLLYNQEQRLWYIGPMFRHERPQKGRYRQF 122
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 25.6 bits (55), Expect = 3.3
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 20 VINSGKTCVLDIEVQGVQQVKRAGGAMAGAVYVFGVQQVKRAGGAMAGAVYVFVKPPSIE 79
V+ + ++V V V + + Q+ R G M G V + + + +
Sbjct: 222 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSI---QRRGRTGRHMPGRVIILMAKGTRD 278
Query: 80 E 80
E
Sbjct: 279 E 279
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 25.8 bits (55), Expect = 3.3
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 70 YVFVKPPSIEELETRLRGRGTET---EDSLRRRLDLARRDMSYGKDSLRSYGII 120
Y V PPS E + ++ + + + + ++ D +
Sbjct: 34 YQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRL 87
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial
phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}
Length = 140
Score = 25.0 bits (54), Expect = 3.4
Identities = 2/21 (9%), Positives = 7/21 (33%)
Query: 66 AGAVYVFVKPPSIEELETRLR 86
K ++ +L ++
Sbjct: 106 LHVNCYITKSANLSQLFQIVK 126
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA,
N-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 121
Score = 25.0 bits (54), Expect = 3.5
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 66 AGAVYVFVKPPSIEELETRLRGRGTETEDSLRRR 99
AGA VKP + EL R++ LRRR
Sbjct: 94 AGADDYLVKPFVLAELVARVKAL-------LRRR 120
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2
[TaxId: 382]}
Length = 129
Score = 24.9 bits (54), Expect = 3.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 63 GAMAGAVYVFVKPPSIEELETRLR 86
A GA V KP +IE+++ +
Sbjct: 99 AAALGANNVLAKPFTIEKMKAAIE 122
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Length = 128
Score = 24.9 bits (54), Expect = 3.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 66 AGAVYVFVKPPSIEELETRLR 86
AGA VKP + LE +L
Sbjct: 100 AGASGYVVKPFTAATLEEKLN 120
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F
{Bacillus subtilis [TaxId: 1423]}
Length = 119
Score = 24.9 bits (54), Expect = 4.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 66 AGAVYVFVKPPSIEELETRLR 86
GA+ F KP I+E+ ++
Sbjct: 94 LGALTHFAKPFDIDEIRDAVK 114
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD,
receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Length = 140
Score = 25.0 bits (54), Expect = 4.0
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 66 AGAVYVFVKPPSIEELETRLR-----GRGTETEDSLRRRLDLARRDM 107
GA KP + + L R R SLRR + A +
Sbjct: 93 DGAYDFIAKPFAADRLVQSARRAEEKRRLVMENRSLRRAAEAASEGL 139
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis
[TaxId: 1423]}
Length = 121
Score = 24.6 bits (53), Expect = 4.0
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 60 RAGGAMAGAVYVFVKPPSIEELETRLR 86
+ G GA KP S E+ R++
Sbjct: 89 KVLGLELGADDYMTKPFSPREVNARVK 115
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 25.3 bits (54), Expect = 4.1
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 70 YVFVKPPSIEELETRLRGRGTETEDSLRRRLDLARRDMSY 109
+ + P EE + +G G T+ + R
Sbjct: 35 ALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRS 74
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 123
Score = 24.8 bits (54), Expect = 4.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 66 AGAVYVFVKPPSIEELETRLR 86
GA Y +KP +E L +R
Sbjct: 97 LGASYFILKPFDMENLAHHIR 117
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 133
Score = 24.7 bits (53), Expect = 4.4
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 66 AGAVYVFVKPPSIEELETRLRGRGTETEDSLRRRLDLAR 104
+G KP +++ ++ L R+ +R
Sbjct: 101 SGMDSCLSKPVTLDVIKQTLT--------LYAERVRKSR 131
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga
maritima [TaxId: 2336]}
Length = 122
Score = 24.3 bits (52), Expect = 5.0
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 60 RAGGAMAGAVYVFVKPPSIEELETRLR 86
R G GA KP + EL R+R
Sbjct: 88 RVKGLNMGADDYLPKPFDLRELIARVR 114
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli
[TaxId: 562]}
Length = 119
Score = 24.3 bits (52), Expect = 5.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 66 AGAVYVFVKPPSIEELETRLR 86
AGA KP IEE+ R++
Sbjct: 93 AGADDYVTKPFHIEEVMARMQ 113
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK
{Caulobacter crescentus [TaxId: 155892]}
Length = 123
Score = 24.2 bits (52), Expect = 5.9
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 63 GAMAGAVYVFVKPPSIEELETRLR 86
G KP S+ ++
Sbjct: 93 IREGGCEAYISKPISVVHFLETIK 116
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 134
Score = 24.2 bits (52), Expect = 6.1
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 60 RAGGAMAGAVYVFVKPPSIEELETRLR 86
+ G V +KP S++ + L
Sbjct: 98 KEKCMSFGLDGVLLKPVSLDNIRDVLS 124
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA,
N-terminal domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 117
Score = 24.2 bits (52), Expect = 6.2
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 60 RAGGAMAGAVYVFVKPPSIEELETRLR 86
+ G GA KP S EL+ R++
Sbjct: 86 KVIGLELGADDYVTKPFSNRELQARVK 112
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 551
Score = 24.6 bits (53), Expect = 7.2
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 85 LRGRGTETEDSLRRRLDLARRDMSYGKDSLRSYGIISE 122
L R D L R L Y +D+LR + IIS
Sbjct: 325 LTYRSFCPPDDLADRGLLGVESSFYAQDALRLWEIISR 362
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 128
Score = 24.2 bits (52), Expect = 7.4
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 66 AGAVYVFVKPPSIEELETRLR 86
+G KP +L+T L
Sbjct: 101 SGMNGFLSKPIKRPKLKTILT 121
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli
[TaxId: 562]}
Length = 121
Score = 23.7 bits (51), Expect = 7.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 66 AGAVYVFVKPPSIEELETRLR 86
GA KP S +EL R++
Sbjct: 95 TGADDYITKPFSPKELVARIK 115
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId:
2336]}
Length = 118
Score = 23.7 bits (51), Expect = 8.5
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 66 AGAVYVFVKPPSIEELETRLR 86
AGA VKP + L
Sbjct: 95 AGAKDFIVKPFQPSRVVEALN 115
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 123
Score = 23.9 bits (51), Expect = 8.6
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 63 GAMAGAVYVFVKPPSIEELETRLR 86
GA KP I+E +
Sbjct: 93 AYQQGAFDYLPKPFDIDEAVALVE 116
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ,
receiver domain {Rhizobium meliloti [TaxId: 382]}
Length = 123
Score = 23.8 bits (51), Expect = 8.8
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 66 AGAVYVFVKPPSIEELETRLR 86
AGAV KP + +
Sbjct: 96 AGAVDFIEKPFEDTVIIEAIE 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.379
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,395
Number of extensions: 26859
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 50
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)