BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18087
(74 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6X|A Chain A, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|B Chain B, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|C Chain C, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
pdb|3I6X|D Chain D, Crystal Structure Of The Calponin Homology Domain Of
Iqgap1
Length = 193
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
W+E+C+ E LPP+TELE LRNG+ LAKLG++ P++V KIYD + Y
Sbjct: 55 WMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRY 105
>pdb|2RR8|A Chain A, Solution Structure Of Calponin Homology Domain Of Iqgap1
Length = 190
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVY 54
W+E+C+ E LPP+TELE LRNG+ LAKLG++ P++V KIYD + Y
Sbjct: 33 WMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRY 83
>pdb|1P5S|A Chain A, Structure And Function Of The Calponin-Homology Domain
Of An Iqgap Protein From Schizosaccharomyces Pombe
Length = 203
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPE 39
WIE C+ L P++ E +LRNG+VLA L P+
Sbjct: 63 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPD 98
>pdb|1P2X|A Chain A, Crystal Structure Of The Calponin-Homology Domain Of
Rng2 From Schizosaccharomyces Pombe
Length = 159
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPE 39
WIE C+ L P++ E +LRNG+VLA L P+
Sbjct: 19 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPD 54
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 5 IESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMV 41
+ES K P L+S+L+NG+VL KL + L P V
Sbjct: 21 LESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSV 57
>pdb|3LB6|D Chain D, The Structure Of Il-13 In Complex With Il-13ralpha2
Length = 380
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 5 IESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYN 55
IE+ I LP S +++ A+ +++ P+ +PE+K+ D D YN
Sbjct: 101 IEAKIHTLLPWQCTNGSEVQSS--WAETTYWISPQGIPETKVQDMDCVYYN 149
>pdb|1EO0|A Chain A, Conserved Domain Common To Transcription Factors Tfiis,
Elongin A, Crsp70
Length = 77
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 10 KETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKI 46
KE L LE N N + ++ H LD E VP K+
Sbjct: 4 KEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTEKL 40
>pdb|1PQV|S Chain S, Rna Polymerase Ii-Tfiis Complex
Length = 309
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 10 KETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKI 46
KE L LE N N + ++ H LD E VP K+
Sbjct: 4 KEVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTEKL 40
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 16 STELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68
ST+ + R+ I AK G L+ V YD ++ NRV + ++ TQ
Sbjct: 284 STDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 336
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 16 STELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68
ST+ + R+ I AK G L+ V YD ++ NRV + ++ TQ
Sbjct: 285 STDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337
>pdb|1UJO|A Chain A, Solution Structure Of The Ch Domain From Mouse Trangelin
Length = 144
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 15/67 (22%)
Query: 23 LRNGIVLAKLGHYLDPE-----MVPE---SKIYDA--DFAVYNRVAE-----KTEMLSHT 67
L+NG++L+KL + L PE VPE S ++ A + + AE KT+M
Sbjct: 40 LKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTV 99
Query: 68 QLTDGED 74
L +G+D
Sbjct: 100 DLYEGKD 106
>pdb|3LB6|C Chain C, The Structure Of Il-13 In Complex With Il-13ralpha2
Length = 380
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 5 IESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYN 55
IE+ I LP S +++ A+ +++ P+ +PE+ + D D YN
Sbjct: 101 IEAXIHTLLPWQCTNGSEVQSS--WAETTYWISPQGIPETXVQDMDCVYYN 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,281,448
Number of Sequences: 62578
Number of extensions: 71082
Number of successful extensions: 161
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 16
length of query: 74
length of database: 14,973,337
effective HSP length: 44
effective length of query: 30
effective length of database: 12,219,905
effective search space: 366597150
effective search space used: 366597150
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)