Query psy18087
Match_columns 74
No_of_seqs 101 out of 376
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 22:16:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2046|consensus 99.7 2E-17 4.4E-22 117.5 2.8 58 1-68 30-87 (193)
2 KOG2128|consensus 99.6 8E-16 1.7E-20 130.7 3.2 58 1-67 47-104 (1401)
3 COG5199 SCP1 Calponin [Cytoske 99.4 4.5E-14 9.7E-19 98.5 2.6 57 1-68 18-74 (178)
4 cd00014 CH Calponin homology d 99.3 1.6E-12 3.5E-17 80.1 2.9 42 1-42 6-48 (107)
5 COG5261 IQG1 Protein involved 99.2 5.1E-12 1.1E-16 104.9 2.7 54 1-57 49-102 (1054)
6 smart00033 CH Calponin homolog 99.2 9.6E-12 2.1E-16 75.8 1.8 41 2-42 6-47 (103)
7 PF00307 CH: Calponin homology 99.0 4.2E-11 9.2E-16 73.7 0.5 60 2-68 5-66 (108)
8 KOG2996|consensus 97.8 1.1E-05 2.5E-10 66.2 2.6 35 18-52 32-66 (865)
9 PF11971 CAMSAP_CH: CAMSAP CH 97.7 1.9E-05 4.1E-10 49.6 1.5 39 12-50 9-47 (85)
10 KOG0532|consensus 97.6 4.9E-05 1.1E-09 62.4 3.0 42 4-49 584-625 (722)
11 KOG0046|consensus 96.9 0.00043 9.4E-09 56.2 1.3 62 2-69 125-195 (627)
12 KOG0046|consensus 95.5 0.011 2.3E-07 48.4 2.6 61 2-68 394-454 (627)
13 PF06294 DUF1042: Domain of Un 87.5 0.59 1.3E-05 32.0 2.7 39 2-42 2-40 (158)
14 PF06395 CDC24: CDC24 Calponin 69.5 3.3 7.2E-05 26.4 1.6 25 15-39 2-26 (89)
15 KOG3000|consensus 65.0 5.7 0.00012 30.2 2.3 44 2-49 21-64 (295)
16 cd08531 SAM_PNT-ERG_FLI-1 Ster 60.2 5.8 0.00012 24.3 1.3 33 1-34 13-47 (75)
17 cd08203 SAM_PNT Sterile alpha 60.0 5.6 0.00012 23.4 1.2 33 1-34 10-43 (66)
18 cd08535 SAM_PNT-Tel_Yan Steril 59.2 6 0.00013 23.8 1.3 33 1-34 11-44 (68)
19 COG5069 SAC6 Ca2+-binding acti 57.7 9.6 0.00021 31.5 2.5 38 4-41 133-172 (612)
20 KOG0517|consensus 56.6 13 0.00029 35.1 3.4 40 3-42 55-94 (2473)
21 cd08538 SAM_PNT-ESE-2-like Ste 56.5 6.9 0.00015 24.3 1.3 34 1-34 15-50 (78)
22 smart00251 SAM_PNT SAM / Point 55.7 5.6 0.00012 24.5 0.7 33 1-34 25-58 (82)
23 cd08532 SAM_PNT-PDEF-like Ster 55.2 7.1 0.00015 24.0 1.1 32 1-34 18-50 (76)
24 KOG3170|consensus 53.0 11 0.00024 27.9 2.1 40 22-62 118-165 (240)
25 cd08536 SAM_PNT-Mae Sterile al 52.7 6.6 0.00014 23.4 0.7 33 1-34 10-43 (66)
26 KOG3631|consensus 49.8 18 0.00039 28.1 2.8 36 2-38 96-132 (365)
27 cd08541 SAM_PNT-FLI-1 Sterile 48.8 12 0.00026 23.8 1.5 33 1-34 25-59 (91)
28 cd08534 SAM_PNT-GABP-alpha Ste 48.5 12 0.00025 23.7 1.4 33 1-34 27-60 (89)
29 cd08533 SAM_PNT-ETS-1,2 Steril 48.2 8.9 0.00019 23.3 0.8 33 1-34 12-45 (71)
30 PF05622 HOOK: HOOK protein; 47.8 13 0.00028 30.5 1.9 37 2-41 13-49 (713)
31 cd08757 SAM_PNT_ESE Sterile al 45.1 10 0.00023 22.5 0.7 34 1-34 10-45 (68)
32 cd08543 SAM_PNT-ETS-2 Sterile 44.9 9.7 0.00021 24.2 0.6 33 1-34 27-60 (89)
33 cd08542 SAM_PNT-ETS-1 Sterile 44.7 9.7 0.00021 24.2 0.6 33 1-34 27-60 (88)
34 cd08540 SAM_PNT-ERG Sterile al 42.7 15 0.00032 22.5 1.1 33 1-34 13-47 (75)
35 cd08537 SAM_PNT-ESE-1-like Ste 41.8 18 0.00038 22.7 1.4 32 2-34 19-53 (78)
36 COG5069 SAC6 Ca2+-binding acti 41.6 17 0.00037 30.1 1.6 54 14-69 395-449 (612)
37 PF11436 DUF3199: Protein of u 40.9 20 0.00044 24.2 1.7 34 2-37 33-68 (124)
38 KOG0035|consensus 38.3 14 0.0003 32.1 0.7 50 15-66 162-212 (890)
39 cd08539 SAM_PNT-ESE-3-like Ste 35.4 26 0.00057 21.6 1.4 33 2-34 14-48 (74)
40 PF02198 SAM_PNT: Sterile alph 35.3 18 0.00039 21.9 0.7 33 1-34 25-58 (84)
41 PF05020 zf-NPL4: NPL4 family, 33.4 21 0.00047 24.7 0.9 14 58-71 118-131 (147)
42 PF12247 MKT1_N: Temperature d 30.2 37 0.0008 21.4 1.5 35 5-41 4-38 (90)
43 PF05681 Fumerase: Fumarate hy 28.6 85 0.0019 23.4 3.5 41 10-50 71-113 (271)
44 COG3115 ZipA Cell division pro 27.2 18 0.00039 28.0 -0.3 34 25-64 233-267 (324)
45 KOG2734|consensus 25.5 57 0.0012 26.9 2.2 29 9-37 158-186 (536)
46 TIGR00434 cysH phosophoadenyly 25.3 75 0.0016 21.7 2.5 16 24-39 24-39 (212)
47 COG5261 IQG1 Protein involved 22.7 30 0.00065 30.5 0.1 47 21-68 35-106 (1054)
48 KOG2065|consensus 21.7 58 0.0013 27.2 1.6 34 3-36 62-98 (679)
49 PRK04306 50S ribosomal protein 21.6 79 0.0017 20.4 1.9 34 25-63 23-57 (98)
50 KOG3631|consensus 20.8 37 0.00081 26.4 0.3 54 16-69 277-333 (365)
51 PF02206 WSN: Domain of unknow 20.4 80 0.0017 18.2 1.6 19 18-36 2-20 (69)
No 1
>KOG2046|consensus
Probab=99.67 E-value=2e-17 Score=117.48 Aligned_cols=58 Identities=26% Similarity=0.457 Sum_probs=49.9
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||+.++..+.+...+|+++|||||+||+|+|+|+|++++ +++ .|.|+|..||||.
T Consensus 30 l~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~--~~~--------~s~~~f~qmEnIs 87 (193)
T KOG2046|consen 30 LREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYPGVVK--KIN--------ESKMAFVQMENIS 87 (193)
T ss_pred HHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCcCccc--ccc--------cccccHHHHHHHH
Confidence 478999987777765569999999999999999999997774 555 7899999999984
No 2
>KOG2128|consensus
Probab=99.58 E-value=8e-16 Score=130.70 Aligned_cols=58 Identities=40% Similarity=0.787 Sum_probs=48.5
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCcccccccc
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHT 67 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~ 67 (74)
+|.|||+|+|+.+||..+|++.|||||+||+|+|.|+|.. .+..|+..+++|||.|||
T Consensus 47 ~k~W~e~cl~edL~pttele~~LRNGV~LAkL~~~f~PD~---------~~~~~~~~~~~frHtdNi 104 (1401)
T KOG2128|consen 47 AKRWIEECLGEDLPPTTELEEGLRNGVYLAKLGQFFAPDL---------EQTIYKANDLHFRHTDNI 104 (1401)
T ss_pred HHHHHHHHhcccCCCchHHHHHhhhhhHHHHHHhhcCCcc---------eeeeeecCCceeecchhH
Confidence 5899999999999999999999999999999999999943 345556666666666665
No 3
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.44 E-value=4.5e-14 Score=98.55 Aligned_cols=57 Identities=21% Similarity=0.405 Sum_probs=50.8
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
++.|||.++++++.|..+|.+.|||||+|||+.|.-.|+. ++||+|+|||-.||||-
T Consensus 18 v~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~-----------I~yKeSkmpFVQmenIs 74 (178)
T COG5199 18 VTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLD-----------IKYKESKMPFVQMENIS 74 (178)
T ss_pred HHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCccc-----------ceecccCCceeeHHHHH
Confidence 4689999999999877799999999999999888877654 57999999999999983
No 4
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.29 E-value=1.6e-12 Score=80.09 Aligned_cols=42 Identities=29% Similarity=0.603 Sum_probs=38.6
Q ss_pred ChhHHHHHhccCCC-CchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087 1 MSIWIESCIKETLP-PSTELESNLRNGIVLAKLGHYLDPEMVP 42 (74)
Q Consensus 1 ik~WIe~vlge~l~-~~~~~~e~LkdGvvLckL~N~l~P~~v~ 42 (74)
+.+||++++++..+ +..+|.+.|+||++||+|+|++.|+.++
T Consensus 6 l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~ 48 (107)
T cd00014 6 LLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLID 48 (107)
T ss_pred HHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCccccc
Confidence 36899999999987 6779999999999999999999999886
No 5
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.22 E-value=5.1e-12 Score=104.90 Aligned_cols=54 Identities=39% Similarity=0.708 Sum_probs=46.4
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCccccccc
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRV 57 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~s 57 (74)
+|.|||+|+++++| ...|++.|||||+|++|.+.++|..+. +|+.+++++|||+
T Consensus 49 aK~WIee~~~~~l~-~~~fe~slRnGV~La~l~q~f~pd~~~--~iF~~~~LQfrHt 102 (1054)
T COG5261 49 AKIWIEEVIEEALP-ELCFEDSLRNGVFLAKLTQRFNPDLTT--VIFPADKLQFRHT 102 (1054)
T ss_pred HHHHHHHHhccCCc-hhhHHHHHhccchHHHHHHHhCCCcee--Eeeecccceeecc
Confidence 57899999999999 458999999999999999999999984 8887765555543
No 6
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.17 E-value=9.6e-12 Score=75.81 Aligned_cols=41 Identities=37% Similarity=0.596 Sum_probs=37.1
Q ss_pred hhHHHHHhccCC-CCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087 2 SIWIESCIKETL-PPSTELESNLRNGIVLAKLGHYLDPEMVP 42 (74)
Q Consensus 2 k~WIe~vlge~l-~~~~~~~e~LkdGvvLckL~N~l~P~~v~ 42 (74)
.+|+.+++++.. .+.++|.+.|+||++||+|+|++.|+.++
T Consensus 6 ~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~ 47 (103)
T smart00033 6 LRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVD 47 (103)
T ss_pred HHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCC
Confidence 689999999875 45678999999999999999999999887
No 7
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.04 E-value=4.2e-11 Score=73.66 Aligned_cols=60 Identities=27% Similarity=0.334 Sum_probs=45.4
Q ss_pred hhHHHHHhccC--CCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKET--LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~--l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||.++++.. -.+..+|.+.|+||++||+|+|++.|+.++.+++.... + .+|..++|++
T Consensus 5 l~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~--~-----~~~~~~~Ni~ 66 (108)
T PF00307_consen 5 LKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNL--K-----SPFDKLENIE 66 (108)
T ss_dssp HHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSS--S-----SHHHHHHHHH
T ss_pred HHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccc--h-----hhhHHHHHHH
Confidence 58999999876 23445899999999999999999999988766773211 1 5666666654
No 8
>KOG2996|consensus
Probab=97.82 E-value=1.1e-05 Score=66.21 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=32.4
Q ss_pred HHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcc
Q psy18087 18 ELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFA 52 (74)
Q Consensus 18 ~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~ 52 (74)
+|..+|||||+||+|+|.|.|+++.+|+|+-.+|+
T Consensus 32 dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQm 66 (865)
T KOG2996|consen 32 DLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQM 66 (865)
T ss_pred HHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCc
Confidence 78999999999999999999999999999977764
No 9
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.68 E-value=1.9e-05 Score=49.62 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=33.4
Q ss_pred CCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCC
Q psy18087 12 TLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50 (74)
Q Consensus 12 ~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~ 50 (74)
..++..+|...|+||++||.|++...|+.+|++.|.-.+
T Consensus 9 ~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~ 47 (85)
T PF11971_consen 9 YFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKT 47 (85)
T ss_pred CCcchhhhhhhhccHHHHHHHHHHhCcceecHhHccccc
Confidence 446677999999999999999999999999987777443
No 10
>KOG0532|consensus
Probab=97.59 E-value=4.9e-05 Score=62.37 Aligned_cols=42 Identities=33% Similarity=0.565 Sum_probs=32.6
Q ss_pred HHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCC
Q psy18087 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA 49 (74)
Q Consensus 4 WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~ 49 (74)
=||.-+..++|- +|..+|-||||||+|||.+.|-+|+ .|..+
T Consensus 584 ~iEtRLk~sLp~--Dl~aALtDGViLChLaN~lRPRSV~--SIHVP 625 (722)
T KOG0532|consen 584 LIETRLKVSLPE--DLAAALTDGVILCHLANHLRPRSVA--SIHVP 625 (722)
T ss_pred HHHHHhcccCch--hHHHHhhcchhhHhhhcccCCCCcc--ceecC
Confidence 345455555554 8999999999999999999998886 66543
No 11
>KOG0046|consensus
Probab=96.87 E-value=0.00043 Score=56.22 Aligned_cols=62 Identities=23% Similarity=0.323 Sum_probs=45.7
Q ss_pred hhHHHHHhccC------CC---CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccCC
Q psy18087 2 SIWIESCIKET------LP---PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQL 69 (74)
Q Consensus 2 k~WIe~vlge~------l~---~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~~ 69 (74)
..||-+.|+.+ +| ...+|.+..||||+||||+|.=-|+.+-.+-||+ |+.==||+-.||.+|
T Consensus 125 v~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~------kk~Lnp~~~~EN~~l 195 (627)
T KOG0046|consen 125 VNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINT------KKKLNPFERNENLNL 195 (627)
T ss_pred HHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhcc------CCcCChhhhccchhh
Confidence 36888888753 22 3447999999999999999999999886666774 233346777777654
No 12
>KOG0046|consensus
Probab=95.51 E-value=0.011 Score=48.40 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=46.8
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+.||-++ |-. |...++.+-||||.||-.+-.++.||.|.+++.+.++ .-.+|+|+-+||.+
T Consensus 394 r~WmNSl-gv~-p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~----~~~~~~~kklENcN 454 (627)
T KOG0046|consen 394 RLWMNSL-GVN-PYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPP----SPLKMPFKKVENCN 454 (627)
T ss_pred HHHHHhc-CCc-HHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCC----CcccccHHHhhcch
Confidence 4577663 221 2234788999999999999999999999999988665 24578899998864
No 13
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=87.54 E-value=0.59 Score=32.01 Aligned_cols=39 Identities=21% Similarity=0.538 Sum_probs=26.9
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP 42 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~ 42 (74)
.+|+.+ +.-+.++. .+...+.||+++|++.+.+.|..|.
T Consensus 2 ~~WL~~-l~ls~~~~-n~~rDfsdG~lvAEIl~~y~p~~vd 40 (158)
T PF06294_consen 2 LKWLQS-LDLSRPPK-NIRRDFSDGYLVAEILSRYYPKLVD 40 (158)
T ss_dssp HHHHHH-S--S--SS--HHHHHTTSHHHHHHHHHH-TTT--
T ss_pred hHHHhc-CCCCCCCC-chHHHcccccHHHHHHHHHCCCCcc
Confidence 479998 55555543 7889999999999999999998764
No 14
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=69.45 E-value=3.3 Score=26.36 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=21.6
Q ss_pred CchHHHHhhhhhHHHHHhhhhhCCC
Q psy18087 15 PSTELESNLRNGIVLAKLGHYLDPE 39 (74)
Q Consensus 15 ~~~~~~e~LkdGvvLckL~N~l~P~ 39 (74)
|.+.+-+.+|-|.-||-|-|+++|.
T Consensus 2 PVt~LW~~fr~G~PLc~lfNal~p~ 26 (89)
T PF06395_consen 2 PVTQLWKLFRQGYPLCVLFNALQPE 26 (89)
T ss_pred cHHHHHHHHhCcCcHHHHHHccCCc
Confidence 3446778999999999999999996
No 15
>KOG3000|consensus
Probab=65.02 E-value=5.7 Score=30.18 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=35.5
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA 49 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~ 49 (74)
..|+-+++.-.+... +-|..|-+-|.++..+.|+.+|++|+.-.
T Consensus 21 laW~N~~l~~n~~kI----Ee~~tGaaycqlmd~l~p~~i~lkkVkf~ 64 (295)
T KOG3000|consen 21 LAWINDLLQLNLTKI----EELCTGAAYCQLMDMLFPPDIPLKKVKFA 64 (295)
T ss_pred HHHHHhhhhcchhhh----hhhcccchhhhhhhhccCCcccccccccc
Confidence 578888887666443 45678999999999999999999998643
No 16
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=60.18 E-value=5.8 Score=24.27 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=23.6
Q ss_pred ChhHHHHHhcc-CCCCchHHHHh-hhhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLPPSTELESN-LRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~~~~~~~e~-LkdGvvLckL~N 34 (74)
+++|++=+..| ++++. ++... -.||--||+|..
T Consensus 13 V~~WL~Wa~~ef~L~~i-~~~~F~~m~Gk~LC~lt~ 47 (75)
T cd08531 13 VRQWLEWAVKEYGLQDV-DVSRFQNIDGKELCKMTK 47 (75)
T ss_pred HHHHHHHHHHHcCCCCC-ChhhccCCChHHHHcCCH
Confidence 46788855544 67653 66665 789999999874
No 17
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=59.98 E-value=5.6 Score=23.41 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=24.1
Q ss_pred ChhHHHHHhc-cCCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIK-ETLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlg-e~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+++|+.-+.. -++++ .++..---||.-||.|..
T Consensus 10 V~~Wl~w~~~~f~L~~-~~~~~F~m~G~~Lc~ls~ 43 (66)
T cd08203 10 VLQWLEWAVKEFSLPP-IDFSKFNMNGKELCLLTK 43 (66)
T ss_pred HHHHHHHHHHhcCCCC-CChhhcCCCHHHHHhCCH
Confidence 4689996665 46665 356666789999999874
No 18
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=59.22 E-value=6 Score=23.75 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=23.3
Q ss_pred ChhHHHHHhc-cCCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIK-ETLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlg-e~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+.+|+.-+.. -++++ .++...=.||--||.|..
T Consensus 11 V~~WL~wa~~ef~L~~-i~~~~F~mnGk~LC~ls~ 44 (68)
T cd08535 11 VLQWLRWAENEFSLPP-IDSNTFEMNGKALCLLTK 44 (68)
T ss_pred HHHHHHHHHHhcCCCC-CChhccCCCHHHHhcCCH
Confidence 4678884444 35655 366767789999999874
No 19
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=57.74 E-value=9.6 Score=31.53 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=27.3
Q ss_pred HHHHHhccCCCC--chHHHHhhhhhHHHHHhhhhhCCCCc
Q psy18087 4 WIESCIKETLPP--STELESNLRNGIVLAKLGHYLDPEMV 41 (74)
Q Consensus 4 WIe~vlge~l~~--~~~~~e~LkdGvvLckL~N~l~P~~v 41 (74)
|=.+.+|--.|+ .-+|-..-|||.++|+|+|-..|..+
T Consensus 133 wc~~~t~~y~p~vd~~df~rswrdGLaf~aLIh~~rPDtl 172 (612)
T COG5069 133 WCDEDTGGYKPEVDTFDFFRSWRDGLAFSALIHDSRPDTL 172 (612)
T ss_pred eccccccCcCCCccHHHHHHHhhhhHHHHHHHhhcCCccc
Confidence 333444444453 33688999999999999999999844
No 20
>KOG0517|consensus
Probab=56.55 E-value=13 Score=35.11 Aligned_cols=40 Identities=33% Similarity=0.507 Sum_probs=31.6
Q ss_pred hHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087 3 IWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP 42 (74)
Q Consensus 3 ~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~ 42 (74)
.|+-+.++.--=.+.||..-||||+.|-||...|.....|
T Consensus 55 KWvNShL~rv~c~I~DLy~DlrDG~~LlkLLEvlSGE~Lp 94 (2473)
T KOG0517|consen 55 KWVNSHLARVSCRIGDLYTDLRDGIMLLKLLEVLSGERLP 94 (2473)
T ss_pred HHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHHccccCC
Confidence 5888888543324568999999999999999999765555
No 21
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=56.53 E-value=6.9 Score=24.31 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=25.4
Q ss_pred ChhHHHHHhcc-CCCC-chHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLPP-STELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~~-~~~~~e~LkdGvvLckL~N 34 (74)
+++|++=+..| ++++ ..+|...--||--||+|..
T Consensus 15 V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~ 50 (78)
T cd08538 15 VWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQ 50 (78)
T ss_pred HHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCH
Confidence 46899955544 6764 2578888999999999974
No 22
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=55.65 E-value=5.6 Score=24.49 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=23.1
Q ss_pred ChhHHHHHhcc-CCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+.+|++-+..+ ++++ .++...--||--||.|..
T Consensus 25 V~~Wl~w~~~ef~L~~-~~~~~f~m~G~~Lc~ls~ 58 (82)
T smart00251 25 VLEWLEWAVKEFSLSP-IDFSKFDMSGKELCSMSK 58 (82)
T ss_pred HHHHHHHHHHhcCCCC-CCcccCCCCHHHHHcCCH
Confidence 46799966654 4444 356666779999999873
No 23
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=55.16 E-value=7.1 Score=23.95 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=23.9
Q ss_pred ChhHHHHHhcc-CCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+++|+.-+..+ ++++ ++...-.||.-||.|..
T Consensus 18 V~~WL~w~~~ef~L~~--~~~~F~mnG~~LC~ls~ 50 (76)
T cd08532 18 VQKWLLWTEHQYRLPP--PPRCFELNGKDLCALSE 50 (76)
T ss_pred HHHHHHHHHHHhCCCC--chhcCCCCHHHHHcCCH
Confidence 46788855544 6776 67777889999999874
No 24
>KOG3170|consensus
Probab=53.03 E-value=11 Score=27.92 Aligned_cols=40 Identities=20% Similarity=0.090 Sum_probs=24.3
Q ss_pred hhhhhHHHHHhhhhh-------CCCCcccccccCCCcc-cccccCCccc
Q psy18087 22 NLRNGIVLAKLGHYL-------DPEMVPESKIYDADFA-VYNRVAEKTE 62 (74)
Q Consensus 22 ~LkdGvvLckL~N~l-------~P~~v~~kkI~~~~~~-~~k~sg~~F~ 62 (74)
.-+||+.+|+|.+.. .|..--+ ||-..+++ .|..++||--
T Consensus 118 Ly~~gvp~c~Ll~~~l~~la~kfp~iKFV-ki~at~cIpNYPe~nlPTl 165 (240)
T KOG3170|consen 118 LYKQGVPLCALLSHHLQSLACKFPQIKFV-KIPATTCIPNYPESNLPTL 165 (240)
T ss_pred eeccccHHHHHHHHHHHHHhhcCCcceEE-ecccccccCCCcccCCCeE
Confidence 458999999999765 3332221 33333333 6777777743
No 25
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=52.74 E-value=6.6 Score=23.42 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=23.2
Q ss_pred ChhHHHHHhcc-CCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+.+|+.-+..+ ++++. ++...-.||--||.|..
T Consensus 10 V~~WL~w~~~ef~L~~~-~~~~F~m~Gk~LC~ls~ 43 (66)
T cd08536 10 VRTWLRWVSARYQLEVV-DLDKFLMNGKGLCLMSL 43 (66)
T ss_pred HHHHHHHHHHHhCCCCC-CccccCCCHHHHHcCCH
Confidence 46788865554 66653 55555679999999874
No 26
>KOG3631|consensus
Probab=49.79 E-value=18 Score=28.10 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=27.5
Q ss_pred hhHHHHHhc-cCCCCchHHHHhhhhhHHHHHhhhhhCC
Q psy18087 2 SIWIESCIK-ETLPPSTELESNLRNGIVLAKLGHYLDP 38 (74)
Q Consensus 2 k~WIe~vlg-e~l~~~~~~~e~LkdGvvLckL~N~l~P 38 (74)
..||-+++- |.|- .-.++|.|-||.||-+|-.+|+.
T Consensus 96 i~WiN~~L~~erIv-Vr~LeEDlfDGqilqkL~ekL~~ 132 (365)
T KOG3631|consen 96 IDWINDVLVPERIV-VRSLEEDLFDGQILQKLFEKLAA 132 (365)
T ss_pred HHHHHHhhcchhhh-HHhhHHhhhhhHHHHHHHHHHHh
Confidence 479987663 3342 23799999999999999999864
No 27
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=48.82 E-value=12 Score=23.85 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=22.4
Q ss_pred ChhHHHHHhcc-CCCCchHHHHhh-hhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLPPSTELESNL-RNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~~~~~~~e~L-kdGvvLckL~N 34 (74)
+++|+.=+..| ++++ .++...- .||--||.|..
T Consensus 25 V~~WL~Wa~~ef~L~~-vd~~~F~~m~Gk~LC~Lsk 59 (91)
T cd08541 25 VRQWLEWAIKEYGLME-IDTSFFQNMDGKELCKMNK 59 (91)
T ss_pred HHHHHHHHHHHcCCCC-CChhhccCCCHHHHHhCCH
Confidence 46788844443 6764 3666654 69999999874
No 28
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=48.47 E-value=12 Score=23.72 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=23.6
Q ss_pred ChhHHHHHhcc-CCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+.+|+.-+..| ++++. ++...-.||--||.|..
T Consensus 27 V~~WL~Wa~~ef~L~~v-~~~~F~m~Gk~LC~Ls~ 60 (89)
T cd08534 27 VLHWVVWAVKEFSLTDI-DLSDWNITGRELCSLTQ 60 (89)
T ss_pred HHHHHHHHHHHcCCCCC-ChhhcCCCHHHHhcCCH
Confidence 36788855544 67654 66666779999999874
No 29
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=48.19 E-value=8.9 Score=23.27 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=23.2
Q ss_pred ChhHHHHHhcc-CCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+++|+.=+..| +++.. ++...-.||--||.|..
T Consensus 12 V~~WL~Wa~~ef~L~~v-~~~~F~m~Gk~LC~ls~ 45 (71)
T cd08533 12 VRQWLLWAVNEFSLEGV-NFQKFCMSGRDLCALGK 45 (71)
T ss_pred HHHHHHHHHHHcCCCCC-CcccCCCCHHHHHcCCH
Confidence 46788844443 66543 66667889999999874
No 30
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=47.84 E-value=13 Score=30.51 Aligned_cols=37 Identities=27% Similarity=0.602 Sum_probs=22.9
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCc
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMV 41 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v 41 (74)
..||.. ++ ++.+..=.+.|-|||+|..+...|.|...
T Consensus 13 v~Wv~t-f~--~~~~~~~~~dL~DGv~L~evL~qIDp~~F 49 (713)
T PF05622_consen 13 VTWVQT-FN--LSAPCSSYEDLSDGVALAEVLHQIDPEYF 49 (713)
T ss_dssp HHHHTT------SS---SHHHHTTSHHHHHHHHHH-TTTS
T ss_pred HHHHHH-CC--CCCCcCCHHHccchHHHHHHHHHhCcccc
Confidence 468876 33 22111223579999999999999999643
No 31
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=45.08 E-value=10 Score=22.46 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=24.3
Q ss_pred ChhHHHHHhc-cCCCC-chHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIK-ETLPP-STELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlg-e~l~~-~~~~~e~LkdGvvLckL~N 34 (74)
+.+|+.-+.. -+++. ..++...-.||--||.|..
T Consensus 10 V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~ 45 (68)
T cd08757 10 VLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTE 45 (68)
T ss_pred HHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCH
Confidence 4689986665 45653 2356666889999999874
No 32
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=44.90 E-value=9.7 Score=24.23 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=22.5
Q ss_pred ChhHHH-HHhccCCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIE-SCIKETLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe-~vlge~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+++|+. ++-.-++++. ++...--||--||.|..
T Consensus 27 V~~WL~Wa~~ef~L~~i-~~~~F~m~Gk~LC~Ls~ 60 (89)
T cd08543 27 VCQWLLWATNEFSLVNV-NFQQFGMNGQELCNLGK 60 (89)
T ss_pred HHHHHHHHHHHcCCCCC-CcccCCCChHHHHcCCH
Confidence 357888 3333466653 56666789999999874
No 33
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=44.68 E-value=9.7 Score=24.16 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=22.2
Q ss_pred ChhHHHHHhc-cCCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIK-ETLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlg-e~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+++|++=+.. -++++. ++...--||--||.|..
T Consensus 27 V~~WL~Wa~~ef~L~~i-~~~~F~m~Gk~LC~Ls~ 60 (88)
T cd08542 27 VRDWVMWAVNEFSLKGV-DFQKFCMNGAALCALGK 60 (88)
T ss_pred HHHHHHHHHHHcCCCCC-CcccCCCCHHHHHcCCH
Confidence 3578884443 356543 56666689999999874
No 34
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=42.71 E-value=15 Score=22.53 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=22.4
Q ss_pred ChhHHHHHhcc-CCCCchHHHHh-hhhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLPPSTELESN-LRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~~~~~~~e~-LkdGvvLckL~N 34 (74)
+++|+.=+..| ++++. ++... -.||--||.|..
T Consensus 13 V~~WL~Wa~~ef~L~~~-~~~~F~~m~Gk~LC~Lsk 47 (75)
T cd08540 13 VRQWLEWAVKEYGLPDV-DVLLFQNIDGKELCKMTK 47 (75)
T ss_pred HHHHHHHHHHHhCCCCC-CcccccCCCHHHHHhCCH
Confidence 46788855544 77664 55544 269999999974
No 35
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=41.83 E-value=18 Score=22.67 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=24.2
Q ss_pred hhHHHHHhcc---CCCCchHHHHhhhhhHHHHHhhh
Q psy18087 2 SIWIESCIKE---TLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 2 k~WIe~vlge---~l~~~~~~~e~LkdGvvLckL~N 34 (74)
.+|+.-.++. ++.+ .+|..-..||--||.|+.
T Consensus 19 leWL~~~~e~n~~dl~~-v~f~~F~MnG~~LC~l~~ 53 (78)
T cd08537 19 LEWISYHVEKNKYDASS-IDFSRCDMDGATLCNCAL 53 (78)
T ss_pred HHHHHHHHHhccCCccc-CCHHHhCCchHHHHccCH
Confidence 5788877643 3333 479999999999999873
No 36
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=41.56 E-value=17 Score=30.15 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=38.3
Q ss_pred CCchHHHHhhhhhHHHH-HhhhhhCCCCcccccccCCCcccccccCCccccccccCC
Q psy18087 14 PPSTELESNLRNGIVLA-KLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQL 69 (74)
Q Consensus 14 ~~~~~~~e~LkdGvvLc-kL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~~ 69 (74)
|+..++...+|||.+|- .|-+++.|..|..++++..++.. ..-+.|++.+|.++
T Consensus 395 p~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~asG--~E~~rfka~en~ny 449 (612)
T COG5069 395 PEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQPASG--IEENRFKAFENENY 449 (612)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhcCCceechhhhccccccc--chhhhhhhhcccch
Confidence 34567889999997655 56788889998877777655221 23467888888765
No 37
>PF11436 DUF3199: Protein of unknown function (DUF3199); InterPro: IPR013514 This entry represents the hypothetical protein YqbG from Bacillus species, as well as related proteins from other bacteria. YqbG exists as a monomer, consisting of four alpha-helices with a right-handed twist, arranged in a left-handed superhelix [].; PDB: 1XN8_A 1ZTS_A.
Probab=40.90 E-value=20 Score=24.24 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=20.6
Q ss_pred hhHHHHHhccCCCCchH--HHHhhhhhHHHHHhhhhhC
Q psy18087 2 SIWIESCIKETLPPSTE--LESNLRNGIVLAKLGHYLD 37 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~--~~e~LkdGvvLckL~N~l~ 37 (74)
..||+.++|.+|++... +.+.+| +.++|||..++
T Consensus 33 e~~I~~~~~~~F~~~~~~p~pe~v~--lA~~kLAqy~A 68 (124)
T PF11436_consen 33 EAEIFRITGHDFSDEDYKPLPEKVR--LALLKLAQYFA 68 (124)
T ss_dssp HHHHHHHHT-----CCG----HHHH--HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcccccChHHHH--HHHHHHHHHHH
Confidence 46999999999975333 556665 78999998875
No 38
>KOG0035|consensus
Probab=38.29 E-value=14 Score=32.11 Aligned_cols=50 Identities=10% Similarity=0.253 Sum_probs=33.9
Q ss_pred CchHHHHhhhhhHHHHHhhhhhCCCCcc-cccccCCCcccccccCCccccccc
Q psy18087 15 PSTELESNLRNGIVLAKLGHYLDPEMVP-ESKIYDADFAVYNRVAEKTEMLSH 66 (74)
Q Consensus 15 ~~~~~~e~LkdGvvLckL~N~l~P~~v~-~kkI~~~~~~~~k~sg~~F~~~~~ 66 (74)
...+|.+.-+||-.+|.+++...|..++ ..+.... ..-...+.+|...+-
T Consensus 162 ~v~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~lt~~--~~~~n~~~A~~iAek 212 (890)
T KOG0035|consen 162 NVQNFHTSWKDGLAFCALIHRHRPDLIDQYDKLTKQ--DPVENLNLAFDIAEK 212 (890)
T ss_pred ccccceecccchHHHHHHHHhcChhhhhhhhhcCcc--chhHHhhhhhhhhhh
Confidence 4568999999999999999999998886 4333322 222233555554443
No 39
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=35.35 E-value=26 Score=21.63 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=23.6
Q ss_pred hhHHHHHhc-cCCC-CchHHHHhhhhhHHHHHhhh
Q psy18087 2 SIWIESCIK-ETLP-PSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 2 k~WIe~vlg-e~l~-~~~~~~e~LkdGvvLckL~N 34 (74)
.+|+.-++. .+++ ...+|+.-..||--||.++.
T Consensus 14 ~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~ 48 (74)
T cd08539 14 WEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSL 48 (74)
T ss_pred HHHHHHHHHHcCCCcccccHHHcCCChHHHHccCH
Confidence 578875543 3444 23478999999999999874
No 40
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=35.30 E-value=18 Score=21.88 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=20.3
Q ss_pred ChhHHHHHhcc-CCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+.+||.-+..+ ++++ .++...=-||.-||.|..
T Consensus 25 V~~Wl~w~~~~f~l~~-~~~~~f~~~G~~Lc~lt~ 58 (84)
T PF02198_consen 25 VLQWLRWVVREFDLPA-IDFSRFNMNGRELCSLTK 58 (84)
T ss_dssp HHHHHHHHHHHTT-SS-CHGGGGTS-HHHHHHSHH
T ss_pred HHHHHHHHHHhcCCCc-CchhccCCCHHHHHHcCH
Confidence 35788855554 3433 355555669999999874
No 41
>PF05020 zf-NPL4: NPL4 family, putative zinc binding region; InterPro: IPR007716 The HRD4 gene is identical to NPL4, a gene previously implicated in nuclear transport. Using a diverse set of substrates and direct ubiquitination assays, analysis revealed that HRD4/NPL4 is required for a poorly characterised step in ER-associated degradation after ubiquitination of target proteins but before their recognition by the 26S proteasome []. This region of the protein contains possibly two zinc binding motifs. Npl4p physically associates with Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 complex functions in the recognition of several polyubiquitin-tagged proteins and facilitates their presentation to the 26S proteasome for processive degradation or even more specific processing.
Probab=33.36 E-value=21 Score=24.70 Aligned_cols=14 Identities=7% Similarity=0.275 Sum_probs=11.9
Q ss_pred CCccccccccCCCC
Q psy18087 58 AEKTEMLSHTQLTD 71 (74)
Q Consensus 58 g~~F~~~~~~~~~~ 71 (74)
-.+|||+||+++-+
T Consensus 118 ~Q~fR~VDhVeF~n 131 (147)
T PF05020_consen 118 RQPFRHVDHVEFEN 131 (147)
T ss_pred CcccccccceeecC
Confidence 56899999999865
No 42
>PF12247 MKT1_N: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022040 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the N-terminal region of MKT1.
Probab=30.19 E-value=37 Score=21.37 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=29.9
Q ss_pred HHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCc
Q psy18087 5 IESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMV 41 (74)
Q Consensus 5 Ie~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v 41 (74)
+.+++|..+|+ ++.-.+--|.+-.+|.|.|.-|.+
T Consensus 4 ~h~~iG~rLP~--elYfyls~GLi~~~ll~~lt~G~~ 38 (90)
T PF12247_consen 4 LHEVIGQRLPD--ELYFYLSIGLISPRLLNALTSGEW 38 (90)
T ss_pred HHHhhccCCCH--HHHHHHHccccChHHHhHhccceE
Confidence 45789999997 788888999999999999987755
No 43
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4.2.1.32 from EC) and class 1 fumarate hydratases (4.2.1.2 from EC), which includes both aerobic (FumA) and anaerobic (FumB) types []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this group is unknown. Fumarate hydratase (also known as fumarase) is a component of the citric acid cycle. In facultative anaerobes such as E. coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre [].; GO: 0016829 lyase activity
Probab=28.59 E-value=85 Score=23.45 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=30.9
Q ss_pred ccCCCCchHHHHhhhhhHHHHHhhhhhCCCCc--ccccccCCC
Q psy18087 10 KETLPPSTELESNLRNGIVLAKLGHYLDPEMV--PESKIYDAD 50 (74)
Q Consensus 10 ge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v--~~kkI~~~~ 50 (74)
|+.++-..++++++..||..+---+-|.|..| |+.+.|+.+
T Consensus 71 G~~~~~~g~l~~ai~~gv~~a~~~~~LR~s~V~~pl~r~Ntgd 113 (271)
T PF05681_consen 71 GQDVPIEGDLEEAINEGVRKAYKEGPLRPSVVSDPLTRKNTGD 113 (271)
T ss_pred CCCCCcChhHHHHHHHHHHHHHhcCCCCccccCCccccccCCC
Confidence 44444333899999999999999999999887 666666554
No 44
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=27.24 E-value=18 Score=28.01 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=25.2
Q ss_pred hhHHHHHhhhhhCCCCcccccccCC-CcccccccCCccccc
Q psy18087 25 NGIVLAKLGHYLDPEMVPESKIYDA-DFAVYNRVAEKTEML 64 (74)
Q Consensus 25 dGvvLckL~N~l~P~~v~~kkI~~~-~~~~~k~sg~~F~~~ 64 (74)
+|=+|.-+||..+||.. +. .-..|-.-|+-|+|+
T Consensus 233 ~gpvLFSvANm~kPGTF------d~dnm~dFsT~gIs~FMq 267 (324)
T COG3115 233 SGPVLFSVANMVKPGTF------DPDNMADFSTPGISFFMQ 267 (324)
T ss_pred CCcceeehhhccCCCCC------CccchhhccccceEEEEe
Confidence 67899999999999987 44 223566667777763
No 45
>KOG2734|consensus
Probab=25.51 E-value=57 Score=26.87 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=22.4
Q ss_pred hccCCCCchHHHHhhhhhHHHHHhhhhhC
Q psy18087 9 IKETLPPSTELESNLRNGIVLAKLGHYLD 37 (74)
Q Consensus 9 lge~l~~~~~~~e~LkdGvvLckL~N~l~ 37 (74)
++++..+++.|-++|.||-|++-|++-+.
T Consensus 158 ~~es~egAevLidaLvdg~vlaLLvqnve 186 (536)
T KOG2734|consen 158 LYESEEGAEVLIDALVDGQVLALLVQNVE 186 (536)
T ss_pred cccccccHHHHHHHHHhccHHHHHHHHHH
Confidence 34444456679999999999999998774
No 46
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=25.33 E-value=75 Score=21.74 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=13.9
Q ss_pred hhhHHHHHhhhhhCCC
Q psy18087 24 RNGIVLAKLGHYLDPE 39 (74)
Q Consensus 24 kdGvvLckL~N~l~P~ 39 (74)
||++||..|+....|.
T Consensus 24 KDS~Vll~L~~~~~~~ 39 (212)
T TIGR00434 24 IQGAVLLDLVSKISPD 39 (212)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 6899999999998764
No 47
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=22.70 E-value=30 Score=30.50 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=30.3
Q ss_pred HhhhhhHHHHHhhhhh--------------------CCCCccc----ccccCC-CcccccccCCccccccccC
Q psy18087 21 SNLRNGIVLAKLGHYL--------------------DPEMVPE----SKIYDA-DFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 21 e~LkdGvvLckL~N~l--------------------~P~~v~~----kkI~~~-~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||-==+|||+-.+= .-|.+ + +++++. ...-|-.+.++|||.|||+
T Consensus 35 ~~lraYeyLCRv~EaK~WIee~~~~~l~~~~fe~slRnGV~-La~l~q~f~pd~~~~iF~~~~LQfrHtdNIN 106 (1054)
T COG5261 35 SALRAYEYLCRVSEAKIWIEEVIEEALPELCFEDSLRNGVF-LAKLTQRFNPDLTTVIFPADKLQFRHTDNIN 106 (1054)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhccCCchhhHHHHHhccch-HHHHHHHhCCCceeEeeecccceeeccccHH
Confidence 5677778999986431 11111 1 234432 3456777999999999996
No 48
>KOG2065|consensus
Probab=21.68 E-value=58 Score=27.23 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=22.6
Q ss_pred hHHHHHhccCCCCchHHHHhhh---hhHHHHHhhhhh
Q psy18087 3 IWIESCIKETLPPSTELESNLR---NGIVLAKLGHYL 36 (74)
Q Consensus 3 ~WIe~vlge~l~~~~~~~e~Lk---dGvvLckL~N~l 36 (74)
.||+++++.+.+...+....++ -|++|-.++|-|
T Consensus 62 swIrsvTsH~~~r~~~~s~q~~~~lhg~Ylra~a~Gi 98 (679)
T KOG2065|consen 62 SWIRSVTSHSSGRKSDTSGQLPDSLHGYYLRALAKGI 98 (679)
T ss_pred HHHHHhccCcccccccccccCCCccchHHHHHHHhhH
Confidence 6999999988763333333333 367877777766
No 49
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=21.60 E-value=79 Score=20.40 Aligned_cols=34 Identities=9% Similarity=-0.035 Sum_probs=23.5
Q ss_pred hhHH-HHHhhhhhCCCCcccccccCCCcccccccCCcccc
Q psy18087 25 NGIV-LAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEM 63 (74)
Q Consensus 25 dGvv-LckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~ 63 (74)
-|++ |++.+..+..|..-..+|+.+- +.|||++.
T Consensus 23 ~G~~~ls~~l~~y~~Gd~V~I~~d~sv-----~kGmPh~~ 57 (98)
T PRK04306 23 RGLSPLSRALQEFEEGDKVHIVIDPSV-----HKGMPHPR 57 (98)
T ss_pred cCCCcHHHHHHhccCCCEEEEEecCce-----ecCCcccc
Confidence 4555 8899999998765434555443 67999874
No 50
>KOG3631|consensus
Probab=20.76 E-value=37 Score=26.39 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=38.6
Q ss_pred chHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcc---cccccCCccccccccCC
Q psy18087 16 STELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFA---VYNRVAEKTEMLSHTQL 69 (74)
Q Consensus 16 ~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~---~~k~sg~~F~~~~~~~~ 69 (74)
..++.....|||+|.-|+-.|.-=-+|++..|-.++. +-+.-.+.|+.|....|
T Consensus 277 Vt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp~S~eekv~NVsfAfeLm~D~GL 333 (365)
T KOG3631|consen 277 VTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTPNSFEEKVHNVSFAFELMKDGGL 333 (365)
T ss_pred eehhhhhhccchHHHHHHHhhccceeecceeecCCCCHHHHHHHHHHHHHHHHccCc
Confidence 3478889999999999999987557776666554432 33445677888876655
No 51
>PF02206 WSN: Domain of unknown function; InterPro: IPR003125 This domain has no known function and is found in Caenorhabditis elegans proteins normally at the N-terminal.
Probab=20.44 E-value=80 Score=18.23 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=13.8
Q ss_pred HHHHhhhhhHHHHHhhhhh
Q psy18087 18 ELESNLRNGIVLAKLGHYL 36 (74)
Q Consensus 18 ~~~e~LkdGvvLckL~N~l 36 (74)
+|.+...+=-.|+|++|++
T Consensus 2 ~l~~~~~~l~~laRv~NaI 20 (69)
T PF02206_consen 2 NLETIVEKLSILARVTNAI 20 (69)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4566666777888888877
Done!