Query psy18087
Match_columns 74
No_of_seqs 101 out of 376
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:16:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i6x_A P195, RAS GTPase-activa 99.9 2.3E-23 7.8E-28 145.5 4.0 68 1-68 52-119 (193)
2 2rr8_A Iqgap1 protein; F-actin 99.9 6.3E-23 2.2E-27 142.4 3.6 68 1-68 30-97 (190)
3 1p2x_A RNG2 protein, RAS GTPas 99.8 7.5E-21 2.6E-25 128.8 3.8 59 1-68 16-74 (159)
4 1h67_A Calponin alpha; cytoske 99.8 7.6E-21 2.6E-25 121.5 2.2 56 1-68 8-63 (108)
5 1wym_A Transgelin-2; CH domain 99.8 3.6E-20 1.2E-24 125.0 2.8 58 1-68 22-86 (155)
6 1p5s_A RAS GTPase-activating-l 99.8 1.2E-19 4.2E-24 127.3 3.7 59 1-68 60-118 (203)
7 1wyp_A Calponin 1; CH domain, 99.8 5.5E-20 1.9E-24 121.9 1.6 56 1-68 22-77 (136)
8 1wyn_A Calponin-2; CH domain, 99.8 9.7E-20 3.3E-24 122.0 2.0 56 1-68 22-77 (146)
9 1ujo_A Transgelin; CH domain, 99.8 1.1E-19 3.7E-24 121.4 2.1 59 1-68 14-79 (144)
10 2l3g_A RHO guanine nucleotide 99.8 2.4E-19 8.2E-24 118.0 2.7 59 1-68 17-81 (126)
11 1wyr_A RHO guanine nucleotide 99.7 1.3E-18 4.4E-23 113.5 2.3 59 1-68 11-75 (121)
12 3ky9_A Proto-oncogene VAV; cal 99.4 2E-14 6.8E-19 110.6 2.6 62 1-68 10-79 (587)
13 2qjz_A Microtubule-associated 99.4 7.1E-14 2.4E-18 92.1 2.1 58 1-69 10-67 (123)
14 1wyo_A Protein EB3, microtubul 99.3 2.3E-13 8E-18 93.2 2.2 58 1-69 27-84 (159)
15 2yrn_A Neuron navigator 2 isof 99.2 2.8E-12 9.6E-17 83.3 2.9 58 2-68 24-83 (129)
16 1aoa_A T-fimbrin; actin-bindin 99.0 1.2E-10 4.1E-15 83.1 3.5 60 2-68 30-98 (275)
17 1pxy_A Fimbrin-like protein; c 99.0 1.3E-10 4.5E-15 88.8 3.0 61 2-68 13-82 (506)
18 1wku_A Alpha-actinin 3; calpon 99.0 5.5E-11 1.9E-15 84.5 0.5 57 2-68 33-89 (254)
19 1rt8_A Fimbrin; filamentous ac 98.9 3.8E-10 1.3E-14 86.5 3.5 64 2-68 18-90 (513)
20 2wa7_A Filamin-B; disease muta 98.8 1.1E-09 3.7E-14 77.2 0.9 59 2-68 26-84 (245)
21 1sh5_A Plectin 1, PLTN, PCN; a 98.6 8.5E-09 2.9E-13 72.3 0.4 56 2-68 18-78 (245)
22 1dxx_A Dystrophin; structural 98.5 1.1E-08 3.9E-13 71.9 0.1 56 2-68 22-78 (246)
23 3f7p_A Plectin-1; plakin, hemi 98.5 1.3E-08 4.5E-13 74.4 0.4 57 2-69 79-135 (296)
24 1rt8_A Fimbrin; filamentous ac 98.4 8.3E-08 2.8E-12 73.5 2.9 63 2-68 291-353 (513)
25 1sjj_A Actinin; 3-helix bundle 98.4 2.4E-08 8.3E-13 78.5 -0.7 57 2-68 14-70 (863)
26 2vzc_A Alpha-parvin; membrane, 98.4 4.9E-08 1.7E-12 63.9 0.9 60 2-68 28-87 (131)
27 3hoc_A Filamin-A; calponin hom 98.2 2.5E-07 8.5E-12 66.9 0.1 59 2-68 53-111 (272)
28 1pxy_A Fimbrin-like protein; c 98.1 1.1E-06 3.6E-11 67.2 2.1 59 2-68 282-340 (506)
29 4b7l_A Filamin-B; structural p 97.7 9.2E-06 3.2E-10 60.0 0.8 48 2-50 23-70 (347)
30 2r8u_A Microtubule-associated 97.2 0.00036 1.2E-08 50.9 4.4 45 2-50 21-65 (268)
31 4abo_I MAL3, microtubule integ 96.3 0.0036 1.2E-07 42.1 3.6 44 2-50 12-55 (145)
32 2d89_A EHBP1 protein; all alph 96.2 0.0027 9.4E-08 40.4 2.5 47 2-48 15-62 (119)
33 2d87_A Smoothelin splice isofo 96.1 0.0028 9.4E-08 41.1 2.1 46 2-47 13-59 (128)
34 2d88_A Protein mical-3; all al 96.0 0.0036 1.2E-07 40.0 2.3 46 2-47 15-61 (121)
35 1wyl_A NEDD9 interacting prote 95.8 0.0037 1.3E-07 39.7 1.9 46 2-47 13-59 (116)
36 2qjx_A Protein BIM1; calponin 95.8 0.0074 2.5E-07 39.6 3.2 43 2-49 16-58 (127)
37 1wjo_A T-plastin; CH domain, a 95.7 0.0062 2.1E-07 39.7 2.5 45 2-46 13-60 (124)
38 1bkr_A Spectrin beta chain; fi 95.6 0.0044 1.5E-07 38.9 1.5 47 2-48 9-56 (109)
39 1wyq_A Spectrin beta chain, br 95.2 0.0073 2.5E-07 38.9 1.5 47 2-48 13-60 (127)
40 1wku_A Alpha-actinin 3; calpon 95.0 0.012 4.1E-07 41.3 2.4 46 2-47 146-192 (254)
41 1sh5_A Plectin 1, PLTN, PCN; a 94.8 0.01 3.4E-07 41.2 1.5 46 2-47 139-185 (245)
42 1aoa_A T-fimbrin; actin-bindin 94.8 0.0051 1.8E-07 43.4 0.0 41 2-42 174-215 (275)
43 1sjj_A Actinin; 3-helix bundle 94.7 0.014 4.8E-07 45.9 2.3 47 1-48 126-174 (863)
44 1bhd_A Utrophin; calponin homo 94.7 0.0091 3.1E-07 38.0 0.9 46 2-47 14-60 (118)
45 2wa7_A Filamin-B; disease muta 94.5 0.011 3.8E-07 41.2 1.2 39 2-42 149-187 (245)
46 1dxx_A Dystrophin; structural 93.9 0.016 5.4E-07 40.3 0.9 45 2-46 141-186 (246)
47 4b7l_A Filamin-B; structural p 92.0 0.047 1.6E-06 40.1 1.2 39 2-42 146-184 (347)
48 3hoc_A Filamin-A; calponin hom 91.6 0.057 1.9E-06 38.7 1.2 39 2-42 176-214 (272)
49 3f7p_A Plectin-1; plakin, hemi 91.6 0.048 1.7E-06 39.6 0.8 61 2-64 195-256 (296)
50 2ee7_A Sperm flagellar protein 65.1 7.1 0.00024 25.1 3.5 38 2-42 21-59 (127)
51 1wix_A HOOK homolog 1, RSGI RU 64.4 3.6 0.00012 27.2 2.0 37 2-41 15-51 (164)
52 1sv0_C Modulator of the activi 46.4 6.3 0.00022 23.2 0.8 34 1-34 19-54 (82)
53 2dkx_A SAM pointed domain-cont 42.9 13 0.00045 22.6 1.9 33 1-34 32-65 (96)
54 1x66_A Friend leukemia integra 42.3 8.1 0.00028 23.7 0.8 33 1-34 32-66 (98)
55 1sv0_A ETS DNA-binding protein 40.4 5.7 0.0002 23.8 -0.1 33 1-34 18-51 (85)
56 1sxd_A GA repeat binding prote 39.2 8.2 0.00028 23.4 0.5 32 2-34 32-64 (91)
57 2ytu_A Friend leukemia integra 31.0 10 0.00034 24.5 -0.1 33 1-34 46-80 (128)
58 1sxe_A Transcriptional regulat 30.8 7.7 0.00026 23.8 -0.6 33 1-34 35-69 (97)
59 2jv3_A ETS1 proto-oncogene; ET 28.6 13 0.00044 23.3 0.1 32 2-34 50-82 (110)
60 1rij_A E6APN1 peptide; Trp-CAG 26.3 24 0.00082 16.9 0.8 8 19-26 6-13 (26)
61 3c5t_B Exendin-4, exenatide; l 25.9 26 0.00088 17.6 1.0 11 17-27 12-22 (31)
62 2qb0_B Telsam domain - lysozym 23.2 13 0.00045 25.6 -0.6 32 1-33 20-52 (241)
63 2e8p_A ELF3 protein; cell-free 20.4 15 0.00052 22.4 -0.7 34 1-34 32-67 (92)
64 2qar_B Telsam domain; polymer, 20.0 13 0.00043 22.5 -1.1 33 1-34 20-53 (93)
No 1
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=99.87 E-value=2.3e-23 Score=145.51 Aligned_cols=68 Identities=40% Similarity=0.742 Sum_probs=64.2
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||++++|+++|+.++|+++|||||+||+|+|+|+|+++|.+||+++++.+|+.++++|++||||+
T Consensus 52 ~~~WIe~~lg~~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~ 119 (193)
T 3i6x_A 52 AKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVI 119 (193)
T ss_dssp HHHHHHHHHSSCCCCGGGHHHHHTTSHHHHHHHHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHH
T ss_pred HHHHHHHHhCCCCCChHHHHHHhccHHHHHHHHHHHCCCCCCccccCCcccccccCcccchHHHHHHH
Confidence 47899999999999877999999999999999999999999989999988889999999999999985
No 2
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=99.86 E-value=6.3e-23 Score=142.44 Aligned_cols=68 Identities=40% Similarity=0.742 Sum_probs=63.4
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||++++|+++|+.++|.++|||||+||+|+|+++|+++|.+||++.+..+|..++++|++||||+
T Consensus 30 ~~~WIe~~lg~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~ 97 (190)
T 2rr8_A 30 AKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVI 97 (190)
T ss_dssp HHHHHHHHSCCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHH
T ss_pred HHHHHHHHhCCCCCChhHHHHHHcchhhHHHHHHHhCCCCcccccccccccccccCCCCcchHHHHHH
Confidence 47899999999999877999999999999999999999999888999888888889999999999985
No 3
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.81 E-value=7.5e-21 Score=128.80 Aligned_cols=59 Identities=31% Similarity=0.545 Sum_probs=53.3
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||++++|+++|+.++|.++|||||+||+|+|+++|++++ ||+.. ++++|++||||+
T Consensus 16 ~~~WIe~~l~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~--kI~~~-------~~~~f~~~eNI~ 74 (159)
T 1p2x_A 16 AKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI--KIFYS-------NELQFRHSDNIN 74 (159)
T ss_dssp HHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCC--CCCCC-------SSCCTTHHHHHH
T ss_pred HHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc--ccccc-------cCCcchHHHHHH
Confidence 478999999999998779999999999999999999999985 88732 588999999985
No 4
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=99.80 E-value=7.6e-21 Score=121.50 Aligned_cols=56 Identities=21% Similarity=0.438 Sum_probs=50.6
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||++++|+++++ +|.++|||||+||+|+|+++||+++ ||+ .+.++|+++|||+
T Consensus 8 ~~~WIe~~l~~~~~~--~l~~~L~dGvvLCkL~N~l~P~~v~--ki~--------~~~~~f~~~eNI~ 63 (108)
T 1h67_A 8 LRVWIEGATGRRIGD--NFMDGLKDGVILCELINKLQPGSVQ--KVN--------DPVQNWHKLENIG 63 (108)
T ss_dssp HHHHHHHHHSCCCCS--CHHHHHHHCSHHHHHHHHHSTTSST--TCC--------CTTSSHHHHHHHH
T ss_pred HHHHHHHHhCCCCcH--HHHHHHccHHHHHHHHHHhCCCCcc--ccc--------ccccchHHHHHHH
Confidence 478999999999965 8999999999999999999999996 887 4578999999986
No 5
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.6e-20 Score=125.04 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=51.9
Q ss_pred ChhHHHHHhccCCCCc----hHHHHhhhhhHHHHHhhhhhCC---CCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETLPPS----TELESNLRNGIVLAKLGHYLDP---EMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l~~~----~~~~e~LkdGvvLckL~N~l~P---~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||++++|+++++. ++|.++|||||+||+|+|+|+| ++|+ ||+ .+.++|++||||+
T Consensus 22 ~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~--kIn--------~~~~~F~~~eNI~ 86 (155)
T 1wym_A 22 LIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVK--KIQ--------ASTMAFKQMEQIS 86 (155)
T ss_dssp HHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCC--CCC--------CCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcC--ccc--------CCCccccHHHHHH
Confidence 4789999999999853 6899999999999999999999 9986 887 4579999999985
No 6
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.77 E-value=1.2e-19 Score=127.30 Aligned_cols=59 Identities=31% Similarity=0.538 Sum_probs=53.1
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||++++++++|+.++|.++|||||+||+|+|+|+|++|+ ||+. .+.++|++||||+
T Consensus 60 ~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~--kI~~-------~s~~~f~~~eNI~ 118 (203)
T 1p5s_A 60 AKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI--KIFY-------SNELQFRHSDNIN 118 (203)
T ss_dssp HHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCC--CCCC-------CSSSCCCHHHHHH
T ss_pred HHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc--cccC-------CCCCcchHHHHHH
Confidence 478999999999998779999999999999999999999995 8852 4588999999985
No 7
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.77 E-value=5.5e-20 Score=121.91 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=50.5
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||++++|+++++ +|.++|||||+||+|+|+++|++++ ||+ .+.++|++||||+
T Consensus 22 ~~~WIe~~l~~~~~~--~l~~~L~DGvvLCkL~N~l~P~~v~--ki~--------~~~~~f~~~eNI~ 77 (136)
T 1wyp_A 22 LREWIEGVTGRRIGN--NFMDGLKDGIILCEFINKLQPGSVK--KIN--------ESTQNWHQLENIG 77 (136)
T ss_dssp HHHHHHHHTCCCCCS--CTTHHHHTSHHHHHHHHHHSTTSSS--CCC--------CSSCSHHHHHHHH
T ss_pred HHHHHHHHhCCCCcH--HHHHHHccHHhHHHHHHhhCCCCcc--ccc--------ccccchHHHHHHH
Confidence 478999999999965 8999999999999999999999996 887 4578999999986
No 8
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.76 E-value=9.7e-20 Score=122.03 Aligned_cols=56 Identities=29% Similarity=0.539 Sum_probs=50.5
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||++++|++++. +|.++|||||+||+|+|+++||+++ ||+ .+.++|++||||+
T Consensus 22 ~~~WIe~~l~~~i~~--~l~~~L~DGvvLCkL~N~l~P~~v~--kin--------~~~~~f~~~eNI~ 77 (146)
T 1wyn_A 22 LRTWIEGLTGLSIGP--DFQKGLKDGTILCTLMNKLQPGSVP--KIN--------RSMQNWHQLENLS 77 (146)
T ss_dssp HHHHHHHHHCCCCCS--CHHHHHHTTSHHHHHHHHHCTTSCS--CCC--------CSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcH--HHHHHHccHHHHHHHHHHhCCCCcc--ccc--------cccccccHHHHHH
Confidence 478999999999964 8999999999999999999999996 887 4578999999985
No 9
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=99.76 E-value=1.1e-19 Score=121.44 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=50.4
Q ss_pred ChhHHHHHhccCCCC----chHHHHhhhhhHHHHHhhhhhCC---CCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETLPP----STELESNLRNGIVLAKLGHYLDP---EMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l~~----~~~~~e~LkdGvvLckL~N~l~P---~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||++++|+++++ .++|.++|||||+||+|+|+|+| ++|+ .||+ .++++|++||||+
T Consensus 14 ~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~-~kin--------~~~~~f~~~eNI~ 79 (144)
T 1ujo_A 14 LVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVK-VPEN--------PPSMVFKQMEQVA 79 (144)
T ss_dssp HHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSC-CCSS--------CCCSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcc-eeec--------CCCchhHHHHHHH
Confidence 478999999999962 35899999999999999999999 7774 2555 5679999999985
No 10
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-19 Score=118.04 Aligned_cols=59 Identities=24% Similarity=0.454 Sum_probs=49.2
Q ss_pred ChhHHHHHhc-cC----CCCchHH-HHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIK-ET----LPPSTEL-ESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlg-e~----l~~~~~~-~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||+++++ ++ +++.++| +++|||||+||+|+|+++||++| ||+. .++++|++||||+
T Consensus 17 ~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~--kI~~-------~~~~~f~~~eNI~ 81 (126)
T 2l3g_A 17 TVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIE--KVYP-------EPRSESECLSNIR 81 (126)
T ss_dssp HHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCS--CCCS-------SCCSHHHHHHHHH
T ss_pred HHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCC--ccCC-------CCCcchHHHHHHH
Confidence 3689999976 43 4456677 79999999999999999999997 8873 3468999999986
No 11
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-18 Score=113.54 Aligned_cols=59 Identities=27% Similarity=0.332 Sum_probs=48.3
Q ss_pred ChhHHHHHhccCC-----CCchH-HHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETL-----PPSTE-LESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l-----~~~~~-~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||+++++.+. ++.++ |.++|||||+||+|+|+++||+++ ||+.+ ++++|++||||+
T Consensus 11 ~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~--ki~~~-------~~~~f~~~eNI~ 75 (121)
T 1wyr_A 11 IVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVE--KFCLD-------PQTEADCINNIN 75 (121)
T ss_dssp HHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCS--CCCSS-------CCSHHHHHHHHH
T ss_pred HHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCC--cCCCC-------CcchHHHHHHHH
Confidence 3689999987543 23444 689999999999999999999997 88743 367999999986
No 12
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.45 E-value=2e-14 Score=110.62 Aligned_cols=62 Identities=19% Similarity=0.288 Sum_probs=49.0
Q ss_pred ChhHHHHHhccCCC--------CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 1 MSIWIESCIKETLP--------PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 1 ik~WIe~vlge~l~--------~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
+++||+++..-+.. +.++|.++|||||+||+|+|+|+|+++|.++|+..+ +..+|++||||.
T Consensus 10 ~~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~~~~~~~~~------~~~~f~~~~ni~ 79 (587)
T 3ky9_A 10 CTHWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREVNLRP------QMSQFLCLKNIR 79 (587)
T ss_dssp HHHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSCGGGSCSSC------TTBHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCCccccCCCc------cccchHHHHHHH
Confidence 36899998653321 246899999999999999999999999888888543 233699999884
No 13
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=99.40 E-value=7.1e-14 Score=92.15 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=50.3
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccCC
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQL 69 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~~ 69 (74)
+.+||.++|+.+++.. |.|+||+++|+|+|+|.||+||++||+- .++++|.+|+|+.+
T Consensus 10 lL~WIN~~L~~~~~ki----E~L~~Ga~yCqlmd~l~Pg~v~l~KVkf-------~a~~e~e~~~N~k~ 67 (123)
T 2qjz_A 10 MLAWINESLQLNLTKI----EQLCSGAAYCQFMDMLFPGSIALKKVKF-------QAKLEHEYIQNFKI 67 (123)
T ss_dssp HHHHHHHHHTCCCCCG----GGGGGSHHHHHHHHHHSTTSSCGGGCCT-------TCCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchH----HHcCchHHHHHHHHHHccCCCcHHHhcc-------CCCChHHHHHHHHH
Confidence 3689999999999875 4799999999999999999999888872 45788999998753
No 14
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.3e-13 Score=93.19 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=50.4
Q ss_pred ChhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccCC
Q psy18087 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQL 69 (74)
Q Consensus 1 ik~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~~ 69 (74)
+.+||+++|+++++.. |.|+||+++|+|+|+|.||+||++||+- .++++|++|+|+.+
T Consensus 27 lL~WIN~~L~~~~~ki----E~L~~GaayCQLmd~L~PgsV~l~KVkf-------~a~~e~e~~~N~k~ 84 (159)
T 1wyo_A 27 MLAWVNDSLHLNYTKI----EQLCSGAAYCQFMDMLFPGCVHLRKVKF-------QAKLEHEYIHNFKV 84 (159)
T ss_dssp HHHHHHHHSCCCCSSG----GGGGGCHHHHHHHHHHSTTSSCTTSCCT-------TCCSSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchh----hhcCccHHHHHHHHHHccCCCcHhhhcc-------CCCChHHHHHHHHH
Confidence 3689999999999875 4799999999999999999999888872 45889999999753
No 15
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.8e-12 Score=83.27 Aligned_cols=58 Identities=14% Similarity=0.361 Sum_probs=48.0
Q ss_pred hhHHHHHhccCCC--CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKETLP--PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~l~--~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||.++|++... ...+|.+.||||++||+|+|.|.|+.++ +++..+ .++|+.|+|++
T Consensus 24 ~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~--~~~~~p-------~~~~~~~eNv~ 83 (129)
T 2yrn_A 24 TDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE--DINGCP-------KNRSQMIENID 83 (129)
T ss_dssp HHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCT--TCCSSC-------CSTTHHHHHHH
T ss_pred HHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcc--cccCCC-------CcHHHHHHHHH
Confidence 5799999998643 3568999999999999999999999886 666333 57888999875
No 16
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=99.03 E-value=1.2e-10 Score=83.08 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=48.0
Q ss_pred hhHHHHHhccC--------CC-CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKET--------LP-PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~--------l~-~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||.++|++. ++ ...+|.+.||||++||+|+|.+.|+.+++++++..+ -.+|+.++|++
T Consensus 30 ~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~-------~~~~~~~eNv~ 98 (275)
T 1aoa_A 30 VNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKK-------LTPFIIQENLN 98 (275)
T ss_dssp HHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSS-------CCHHHHHHHHH
T ss_pred HHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCC-------CCHHHHHHHHH
Confidence 57999999973 32 346899999999999999999999999877777322 23678888875
No 17
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.00 E-value=1.3e-10 Score=88.77 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=49.4
Q ss_pred hhHHHHHhccC------CC---CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKET------LP---PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~------l~---~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||.++|++. +| ...+|.+.||||++||+|+|++.|+.+..++|+.++ ...+|+.++||+
T Consensus 13 ~~WIN~~L~~~~~~~~~l~~~~~v~~l~~dL~DGv~L~~Lin~l~~~~i~~~~in~~~------~~~~~~~~eNi~ 82 (506)
T 1pxy_A 13 VQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKR------VLNPWERNENHT 82 (506)
T ss_dssp HHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCS------SCCHHHHHHHHH
T ss_pred HHHHHHHhccCccccccCCCCCchhHHHHHhcchHHHHHHHHHHcCCCCCccccCccc------cccHHHHHHHHH
Confidence 47999999987 32 355899999999999999999999998666787442 234789999986
No 18
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=98.99 E-value=5.5e-11 Score=84.52 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=48.7
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||.++|++.-++..+|.+.||||++||+|+|.|.|+.++ +++ .+.++|+.++|++
T Consensus 33 ~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~--k~~--------~~~~~~~~~eNi~ 89 (254)
T 1wku_A 33 TAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP--RPD--------KGKMRFHKIANVN 89 (254)
T ss_dssp HHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCC--CCC--------SCCSHHHHHHHHH
T ss_pred HHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCC--CCC--------CCccHHHHHHhHH
Confidence 57999999987776778999999999999999999999886 432 3468899999986
No 19
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.94 E-value=3.8e-10 Score=86.47 Aligned_cols=64 Identities=17% Similarity=0.287 Sum_probs=50.8
Q ss_pred hhHHHHHhccC------CC---CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKET------LP---PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~------l~---~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||.++|++. +| ...+|.+.||||++||+|+|++.|+.++.++|+.+ .+++..++|+.++|++
T Consensus 18 ~~WIN~~L~~~~~~~~~lpi~~~v~dl~~dL~DG~~L~~Lie~l~~~~i~~~~i~~~---~~~~~~~~~~~~eNi~ 90 (513)
T 1rt8_A 18 IKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQ---RNNKPLDNFKCIENNN 90 (513)
T ss_dssp HHHHHHHHTTCTTTGGGCSCCTTSTHHHHHTTTSHHHHHHHHHHSTTSSCGGGSCCC---C---CCCHHHHHHHHH
T ss_pred HHHHHHhccCCccccccCCCCCchHHHHHHhhcHHHHHHHHHHHcCCCcchhhcCCc---cccCcccHHHHHHHHH
Confidence 58999999986 22 34589999999999999999999999876778743 2345678999999975
No 20
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=98.77 E-value=1.1e-09 Score=77.24 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=47.5
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||.++|++.-+...+|.+.||||++||+|+|+|.|+.++ ++++.++ .++|+.++|++
T Consensus 26 ~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~-~~~n~~~-------~~~~~~~eNv~ 84 (245)
T 2wa7_A 26 TRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMY-RKYHQRP-------TFRQMQLENVS 84 (245)
T ss_dssp HHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCS-SCCCSSC-------CSHHHHHHHHH
T ss_pred HHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCCc-hhcCCCC-------CcHHHHHHHHH
Confidence 57999999876555668999999999999999999999874 4776443 45677788875
No 21
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=98.56 E-value=8.5e-09 Score=72.28 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=45.0
Q ss_pred hhHHHHHhccC----CC-CchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKET----LP-PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~----l~-~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||.+++++. .+ ...+|.+.|+||++||+|++.+.|+.+| +. ...++|+.++|++
T Consensus 18 ~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~--~~---------~~~~~~~~~eNv~ 78 (245)
T 1sh5_A 18 TKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLP--RE---------KGRMRFHKLQNVQ 78 (245)
T ss_dssp HHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCC--CC---------CCCSHHHHHHHHH
T ss_pred HHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCcccc--CC---------CCcchHHHHHhHH
Confidence 47999999884 32 4558999999999999999999998886 21 2357888898876
No 22
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=98.52 E-value=1.1e-08 Score=71.93 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=45.1
Q ss_pred hhHHHHHhccCC-CCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKETL-PPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~l-~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||.+++++.. ++..+|.+.|+||++||+|+|+|.|+.+| +. ...++|+.++|++
T Consensus 22 ~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~--~~---------~~~~~~~~~eNv~ 78 (246)
T 1dxx_A 22 TKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLP--KE---------KGSTRVHALNNVN 78 (246)
T ss_dssp HHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCC--CC---------CCSSHHHHHHHHH
T ss_pred HHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCC--CC---------CCccHHHHHHHHH
Confidence 579999998764 45668999999999999999999988775 21 2346788888875
No 23
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=98.52 E-value=1.3e-08 Score=74.44 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=46.6
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccCC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQL 69 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~~ 69 (74)
.+||.+.+++.-+...+|.+.||||++||+|++.|.|+.+| + . ...++|+.++|+++
T Consensus 79 t~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~--~-~--------~~~~r~~kleNvn~ 135 (296)
T 3f7p_A 79 TKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLP--R-E--------KGRMRFHKLQNVQI 135 (296)
T ss_dssp HHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCC--C-C--------CCSSHHHHHHHHHH
T ss_pred HHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCccc--c-c--------CCcChhhhhhhHHH
Confidence 47999999876666668999999999999999999999886 2 1 24578888988763
No 24
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.44 E-value=8.3e-08 Score=73.53 Aligned_cols=63 Identities=19% Similarity=0.325 Sum_probs=47.9
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||.+. +.+. ...+|.+.||||++||+|++++.||.+.+++++..|.. .+..++|+.++|++
T Consensus 291 ~~WiN~~-~~~~-~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~--~~~~~r~~~~eNv~ 353 (513)
T 1rt8_A 291 TLWLNSL-DVTP-SIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPAS--GDEMMRFKAVENCN 353 (513)
T ss_dssp HHHHHHT-TCSS-CCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTT--SCCCCHHHHHHHHH
T ss_pred HHHHHhc-CCCC-CccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCccc--ccccchHHHHHHHH
Confidence 4799998 3332 34589999999999999999999999877788754411 01247899999875
No 25
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=98.41 E-value=2.4e-08 Score=78.50 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=47.6
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||.++|++.-++..+|.+.|+||++||+|++.|.|+.+| +++ .+.++|..++|++
T Consensus 14 ~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~--~~~--------~~~~~~~~~eN~~ 70 (863)
T 1sjj_A 14 TAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLA--KPE--------RGKMRVHKISNVN 70 (863)
T ss_dssp HHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCC--CSC--------CCSSHHHHHHHHH
T ss_pred HHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCcee--CCC--------CCccHHHHHHHHH
Confidence 47999999877666778999999999999999999999886 443 2357888888875
No 26
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=98.41 E-value=4.9e-08 Score=63.87 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=46.6
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
..||-+.|.+.-.+..+|.+.|+||++||+|++.+.|+.+|+++++..|. ++|..++|++
T Consensus 28 t~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~-------~r~~kieNv~ 87 (131)
T 2vzc_A 28 ITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPD-------SFEQKVLNVS 87 (131)
T ss_dssp HHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCC-------SHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCC-------cHHHHHHHHH
Confidence 46999888764335668999999999999999999999998777775553 4566666654
No 27
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=98.17 E-value=2.5e-07 Score=66.85 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=44.1
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||-+.|...-+...+|.+.||||++||+|++.|.|+.+ .++++..+. ++|..++|++
T Consensus 53 t~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l-~~~~~~~p~-------~r~~kleNv~ 111 (272)
T 3hoc_A 53 TRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKM-HRKHNQRPT-------FRQMQLENVS 111 (272)
T ss_dssp HHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCC-SSCCCSSCC-------SHHHHHHHHH
T ss_pred HHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCcc-ccccCCCCc-------cHHHHHHHHH
Confidence 4799999876545566899999999999999999999877 247665442 3445566653
No 28
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=98.09 E-value=1.1e-06 Score=67.20 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=44.8
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccccccC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQ 68 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~~~~~ 68 (74)
.+||.+.+-. +...+|.+.|+||++||+|++.|.|+.+++++++.++ ..++|+.++|++
T Consensus 282 ~~WiN~~~~~--~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~------~~~r~~~leNv~ 340 (506)
T 1pxy_A 282 RLWINSLGID--SYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPP------IKMPFRKVENCN 340 (506)
T ss_dssp HHHHTTTTCS--SCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSS------CCCHHHHHHHHH
T ss_pred HHHHHhcCCC--CCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCc------cccHHHHHHHHH
Confidence 4799887532 2345899999999999999999999998876776432 246777788764
No 29
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=97.65 E-value=9.2e-06 Score=59.98 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=37.4
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~ 50 (74)
.+||-+.|...-+...+|.+.|+||++||+|++.|.+..++ ++.+..+
T Consensus 23 t~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~-~~~~~~p 70 (347)
T 4b7l_A 23 TRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMY-RKYHQRP 70 (347)
T ss_dssp HHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCS-SCCCSSC
T ss_pred HHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCccC-hhhcCCc
Confidence 36999888665455668999999999999999999988775 3444333
No 30
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=97.19 E-value=0.00036 Score=50.91 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=39.2
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~ 50 (74)
..||-+.|+-.+...+ .|.+|.+.|.|+..|.||.||++||.-..
T Consensus 21 L~WiN~~L~~~~~kiE----el~tGaayCQlmd~l~P~~i~l~kVkf~a 65 (268)
T 2r8u_A 21 LAWINESLQLNLTKIE----QLCSGAAYCQFMDMLFPGSIALKKVKFQA 65 (268)
T ss_dssp HHHHHHHHTCCCCCGG----GGGGSHHHHHHHHHHSTTSSCGGGCCTTC
T ss_pred HHHHHHHhcCCcchHH----HcccchHHHHHHHHHccCCCchhhccCCC
Confidence 5799999999888754 48999999999999999999999987554
No 31
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=96.29 E-value=0.0036 Score=42.13 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=37.7
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~ 50 (74)
..||-+.|+-.+...+ .|.+|.+-|.|+..|. |+||++|+.-..
T Consensus 12 L~WiN~~L~~n~tkIE----~l~sGAaYCQlmD~lf-g~i~l~kVkf~a 55 (145)
T 4abo_I 12 LAWINQVTSLGLTRIE----DCGKGYAMIQIFDSIY-QDIPLKKVNFEC 55 (145)
T ss_dssp HHHHHHHHTCCCCSGG----GGGGSHHHHHHHHHHH-CCSCTTTSCSSC
T ss_pred HHHHHHHcCCCcchHH----HccccHHHHHHHHHHh-cCcchhhcccCC
Confidence 5799999998887754 5899999999999999 889999987443
No 32
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.19 E-value=0.0027 Score=40.43 Aligned_cols=47 Identities=17% Similarity=0.371 Sum_probs=36.5
Q ss_pred hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccC
Q psy18087 2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD 48 (74)
Q Consensus 2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~ 48 (74)
.+|....+..- --...+|-...+||.++|-|++.+.|+.++...+..
T Consensus 15 L~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~ 62 (119)
T 2d89_A 15 LVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNP 62 (119)
T ss_dssp HHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCT
T ss_pred HHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhcc
Confidence 57999888532 113558999999999999999999999887555543
No 33
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=96.05 E-value=0.0028 Score=41.06 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=36.2
Q ss_pred hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087 2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY 47 (74)
Q Consensus 2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~ 47 (74)
.+|....+..- --...+|-...+||.++|.|++.+.|+.++...+.
T Consensus 13 L~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l~ 59 (128)
T 2d87_A 13 LDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLS 59 (128)
T ss_dssp HHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTSC
T ss_pred HHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHcC
Confidence 57999888642 11355899999999999999999999988755554
No 34
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=95.98 E-value=0.0036 Score=40.05 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=35.8
Q ss_pred hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087 2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY 47 (74)
Q Consensus 2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~ 47 (74)
.+|....+..- --...+|-...+||.++|.|++.+.|+.++...+.
T Consensus 15 L~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~ 61 (121)
T 2d88_A 15 LGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLD 61 (121)
T ss_dssp HHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTSC
T ss_pred HHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHHHcC
Confidence 57999888531 11355899999999999999999999988655554
No 35
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=95.84 E-value=0.0037 Score=39.66 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=35.7
Q ss_pred hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087 2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY 47 (74)
Q Consensus 2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~ 47 (74)
.+|....+..- --...+|-...+||.++|-|++.+.|+.++...+.
T Consensus 13 L~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~ 59 (116)
T 1wyl_A 13 LRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQ 59 (116)
T ss_dssp HHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCCSSGG
T ss_pred HHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCHHHhc
Confidence 57998877531 11355899999999999999999999988755554
No 36
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.0074 Score=39.61 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=36.2
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCC
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA 49 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~ 49 (74)
.+||-+.++-.+...+ .|.+|.+.|.|++.+. |.+|.+|+.-.
T Consensus 16 L~WiN~~L~~n~~kiE----el~tGaayCQl~d~l~-g~v~l~kVkf~ 58 (127)
T 2qjx_A 16 LTWLNGLLNLNYKKIE----ECGTGAAYCQIMDSIY-GDLPMNRVKFN 58 (127)
T ss_dssp HHHHHHHHTCCCCSGG----GGGGSHHHHHHHHHHH-CCSCGGGSCTT
T ss_pred HHHHHHHHcCCccHHH----HccchHHHHHHHhhhc-cccCccccCCC
Confidence 5799999999887754 4689999999999999 56898888743
No 37
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=95.65 E-value=0.0062 Score=39.68 Aligned_cols=45 Identities=9% Similarity=0.273 Sum_probs=34.5
Q ss_pred hhHHHHHhccCC--CCchHHH-HhhhhhHHHHHhhhhhCCCCcccccc
Q psy18087 2 SIWIESCIKETL--PPSTELE-SNLRNGIVLAKLGHYLDPEMVPESKI 46 (74)
Q Consensus 2 k~WIe~vlge~l--~~~~~~~-e~LkdGvvLckL~N~l~P~~v~~kkI 46 (74)
.+|.-..+...- ....+|. ..++||+++|.|++.+.|+.+...-+
T Consensus 13 l~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv 60 (124)
T 1wjo_A 13 VNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLV 60 (124)
T ss_dssp HHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTS
T ss_pred HHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHh
Confidence 478887665422 2355799 89999999999999999999865433
No 38
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=95.56 E-value=0.0044 Score=38.90 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=36.1
Q ss_pred hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccC
Q psy18087 2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD 48 (74)
Q Consensus 2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~ 48 (74)
..|....+..- --...+|-.+.+||.++|.|++.+.|+.++...+..
T Consensus 9 L~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~~ 56 (109)
T 1bkr_A 9 LLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKK 56 (109)
T ss_dssp HHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCCT
T ss_pred HHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcCc
Confidence 57998877531 113568999999999999999999999887555543
No 39
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=95.17 E-value=0.0073 Score=38.94 Aligned_cols=47 Identities=11% Similarity=0.270 Sum_probs=36.3
Q ss_pred hhHHHHHhcc-CCCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccC
Q psy18087 2 SIWIESCIKE-TLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD 48 (74)
Q Consensus 2 k~WIe~vlge-~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~ 48 (74)
..|....+.. +--...+|-...+||.++|.|++.+.|+.++...+..
T Consensus 13 L~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~ 60 (127)
T 1wyq_A 13 LLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKK 60 (127)
T ss_dssp HHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCS
T ss_pred HHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCc
Confidence 5799887753 1113558999999999999999999999887666543
No 40
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=95.00 E-value=0.012 Score=41.35 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=34.8
Q ss_pred hhHHHHHhcc-CCCCchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087 2 SIWIESCIKE-TLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY 47 (74)
Q Consensus 2 k~WIe~vlge-~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~ 47 (74)
..|+...+.. +--+..+|-..++||.++|.|++.+.|+.++...+.
T Consensus 146 L~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~ 192 (254)
T 1wku_A 146 LLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLR 192 (254)
T ss_dssp HHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGCC
T ss_pred HHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCcccccccC
Confidence 5799877741 111355788999999999999999999988755544
No 41
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=94.80 E-value=0.01 Score=41.22 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=35.2
Q ss_pred hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087 2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY 47 (74)
Q Consensus 2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~ 47 (74)
..|+...+..- --...+|...++||.++|.|++.+.|+.++...+.
T Consensus 139 L~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~ 185 (245)
T 1sh5_A 139 LLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVY 185 (245)
T ss_dssp HHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHH
T ss_pred HHHHHHHhccCCCcccCCccccccchHHHHHHHHHHCCCCCCHHHcc
Confidence 47988777541 11345788999999999999999999998755443
No 42
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=94.79 E-value=0.0051 Score=43.44 Aligned_cols=41 Identities=7% Similarity=0.204 Sum_probs=32.0
Q ss_pred hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087 2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVP 42 (74)
Q Consensus 2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~ 42 (74)
.+|.-..+... .+...+|...++||.++|.|++.+.|+.+|
T Consensus 174 L~W~n~~l~~~g~~~I~nF~~s~~DG~a~~aLi~~~~P~~~~ 215 (275)
T 1aoa_A 174 LRWANFHLENSGWQKINNFSADIKDSKAYFHLLNQIAPKGQK 215 (275)
T ss_dssp HHHHHHHHHHTTCCCCSCSSTTTTTSHHHHHHHHHHSCCSCS
T ss_pred HHHHHHHHHhcCCCcchhhhhhhhhhHHHHHHHHHHCCCccc
Confidence 47888776432 222568988999999999999999998654
No 43
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=94.70 E-value=0.014 Score=45.89 Aligned_cols=47 Identities=15% Similarity=0.332 Sum_probs=36.4
Q ss_pred ChhHHHHHhccCCC--CchHHHHhhhhhHHHHHhhhhhCCCCcccccccC
Q psy18087 1 MSIWIESCIKETLP--PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD 48 (74)
Q Consensus 1 ik~WIe~vlge~l~--~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~ 48 (74)
+..|.-..+. ..+ +..+|-.+++||.++|.|++.+.|+.++...+..
T Consensus 126 ll~W~~~~~~-~~~~~~v~nf~~s~~dg~~~~~li~~~~p~~~~~~~~~~ 174 (863)
T 1sjj_A 126 LLLWYQRKTA-PYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRK 174 (863)
T ss_dssp THHHHHHHHT-TSTTCCCCSSSGGGTTSHHHHHHHHTTCCSSSCSGGGGS
T ss_pred HHHHHHHhcc-CCCCCCCCCCccccccHHHHHHHHHHhCCCCcChhhCCC
Confidence 3579987763 221 3558999999999999999999999998665543
No 44
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=94.65 E-value=0.0091 Score=37.98 Aligned_cols=46 Identities=11% Similarity=0.285 Sum_probs=35.4
Q ss_pred hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCccccccc
Q psy18087 2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY 47 (74)
Q Consensus 2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~ 47 (74)
.+|....+..- --...+|-.+.+||.++|-|++.+.|+.++...+.
T Consensus 14 L~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~ 60 (118)
T 1bhd_A 14 LSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVV 60 (118)
T ss_dssp HHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHH
T ss_pred HHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhC
Confidence 47999888521 11355899999999999999999999988654443
No 45
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=94.52 E-value=0.011 Score=41.18 Aligned_cols=39 Identities=31% Similarity=0.501 Sum_probs=31.1
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP 42 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~ 42 (74)
.+|....+.. . ...+|...++||.++|.|++.+.|+.+|
T Consensus 149 L~W~~~~~~~-~-~v~nFs~s~~dG~a~~aLi~~~~P~~i~ 187 (245)
T 2wa7_A 149 LGWIQNKIPY-L-PITNFNQNWQDGKALGALVDSCAPGLCP 187 (245)
T ss_dssp HHHHHHHSTT-S-CCCCSSGGGTTSHHHHHHHHHHSTTSST
T ss_pred HHHHHHhCCC-C-CCCCCcccchhhHHHHHHHHHHCccccc
Confidence 4688876642 2 3457888999999999999999999874
No 46
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=93.88 E-value=0.016 Score=40.34 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=34.5
Q ss_pred hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcccccc
Q psy18087 2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKI 46 (74)
Q Consensus 2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI 46 (74)
.+|....+..- --...+|...++||.++|.|++.+.|+.++...+
T Consensus 141 L~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~~~~~ 186 (246)
T 1dxx_A 141 LSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFDWNSV 186 (246)
T ss_dssp HHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHH
T ss_pred HHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccchhhh
Confidence 47888777531 1135578899999999999999999998865444
No 47
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=92.05 E-value=0.047 Score=40.10 Aligned_cols=39 Identities=31% Similarity=0.501 Sum_probs=30.4
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP 42 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~ 42 (74)
.+|....+.. . +..+|-.+.+||.++|.|++.+.|+.+|
T Consensus 146 L~W~~~~~~~-~-~v~nF~~sw~DG~af~aLi~~~~P~~~~ 184 (347)
T 4b7l_A 146 LGWIQNKIPY-L-PITNFNQNWQDGKALGALVDSCAPGLCP 184 (347)
T ss_dssp HHHHHHHCTT-S-CCCCSSGGGTTSHHHHHHHHHHSTTSST
T ss_pred HHHHHhhCCC-c-ccCCCCCCccchHHHHHHHHHhCCcccc
Confidence 4687765521 2 3457889999999999999999999875
No 48
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=91.60 E-value=0.057 Score=38.69 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=30.0
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP 42 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v~ 42 (74)
.+|....+. .. +..+|....+||.++|.|++.+.|+.+|
T Consensus 176 L~W~n~~~~-~~-~I~nFs~sw~DG~af~aLi~~~~P~li~ 214 (272)
T 3hoc_A 176 LGWIQNKLP-QL-PITNFSRDWQSGRALGALVDSCAPGLCP 214 (272)
T ss_dssp HHHHHHHCT-TS-CCCCSSGGGTTSHHHHHHHHHHSTTSST
T ss_pred HHHHHhhCC-CC-CCCChhhcccchHHHHHHHHHhCccccc
Confidence 467776542 11 3447888999999999999999999884
No 49
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=91.56 E-value=0.048 Score=39.59 Aligned_cols=61 Identities=13% Similarity=0.284 Sum_probs=39.9
Q ss_pred hhHHHHHhccC-CCCchHHHHhhhhhHHHHHhhhhhCCCCcccccccCCCcccccccCCccccc
Q psy18087 2 SIWIESCIKET-LPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEML 64 (74)
Q Consensus 2 k~WIe~vlge~-l~~~~~~~e~LkdGvvLckL~N~l~P~~v~~kkI~~~~~~~~k~sg~~F~~~ 64 (74)
..|....+..- --...+|....+||.++|.|++.+.|+.++...+... .....-.+.|.++
T Consensus 195 L~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~~--~~~~N~~~Af~~A 256 (296)
T 3f7p_A 195 LLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQ--TNLENLDQAFSVA 256 (296)
T ss_dssp HHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTTS--CHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHHHcCcc--cHHHHHHHHHHHH
Confidence 46888777531 1134578899999999999999999998864444322 2222334445554
No 50
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.09 E-value=7.1 Score=25.09 Aligned_cols=38 Identities=24% Similarity=0.646 Sum_probs=28.6
Q ss_pred hhHHHHHhccCCC-CchHHHHhhhhhHHHHHhhhhhCCCCcc
Q psy18087 2 SIWIESCIKETLP-PSTELESNLRNGIVLAKLGHYLDPEMVP 42 (74)
Q Consensus 2 k~WIe~vlge~l~-~~~~~~e~LkdGvvLckL~N~l~P~~v~ 42 (74)
.+|+.+ -++. +.-++.-.+.||+++|++.+.+.|..|.
T Consensus 21 ~~WL~~---l~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vd 59 (127)
T 2ee7_A 21 YLWVDN---IPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVE 59 (127)
T ss_dssp HHHHHH---SCCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCC
T ss_pred HHHHHc---CCCCCCCCchhhhccchhHHHHHHHHHCcCccc
Confidence 368873 2332 2236888899999999999999998774
No 51
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=64.39 E-value=3.6 Score=27.24 Aligned_cols=37 Identities=24% Similarity=0.545 Sum_probs=25.1
Q ss_pred hhHHHHHhccCCCCchHHHHhhhhhHHHHHhhhhhCCCCc
Q psy18087 2 SIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMV 41 (74)
Q Consensus 2 k~WIe~vlge~l~~~~~~~e~LkdGvvLckL~N~l~P~~v 41 (74)
..|+...-. . .+..+ .+.|.||++|.++.+.|.|...
T Consensus 15 l~W~~tf~~-~-~~~~~-~~dL~DG~~L~~iL~~IDp~~F 51 (164)
T 1wix_A 15 IIWLQTFKT-A-SPCQD-VKQLTNGVTMAQVLHQIDVAWF 51 (164)
T ss_dssp HHHHTTCCC-S-SCCCS-HHHHTTSHHHHHHHHHHCTTTS
T ss_pred HHHHHHcCC-C-CCcCc-HHHhccHHHHHHHHHHhCcccc
Confidence 367765322 1 12223 3569999999999999999754
No 52
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=46.43 E-value=6.3 Score=23.18 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=22.2
Q ss_pred ChhHHHHHhcc-CCC-CchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLP-PSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~-~~~~~~e~LkdGvvLckL~N 34 (74)
+++|+.-+..+ .++ +..++...=.||-.||.|..
T Consensus 19 V~~WL~w~~~e~~l~l~~~~~~~f~m~G~~Lc~ls~ 54 (82)
T 1sv0_C 19 VWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSL 54 (82)
T ss_dssp HHHHHHHHHHHHTCCCCTHHHHTCCSCHHHHHHCCH
T ss_pred HHHHHHHHHHHhCCCCCCCccccCCCCHHHHHhCCH
Confidence 35788866555 353 33355544479999999874
No 53
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.93 E-value=13 Score=22.61 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=21.4
Q ss_pred ChhHHHHHh-ccCCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCI-KETLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vl-ge~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+++|+.-+. ..++++. ++...=.||--||.|..
T Consensus 32 V~~WL~W~~~ef~L~~i-~~~~f~m~G~~LC~lsk 65 (96)
T 2dkx_A 32 VQKWLLWTEHQYRLPPM-GKAFQELAGKELCAMSE 65 (96)
T ss_dssp HHHHHHHHHHHTTCCCC-HHHHSSCCHHHHHHSCH
T ss_pred HHHHHHHHHHhcCCCCC-CcccCCCCHHHHHhCCH
Confidence 357888444 3466654 45433369999999874
No 54
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.28 E-value=8.1 Score=23.68 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=21.6
Q ss_pred ChhHHHHHhc-cCCCCchHHHHh-hhhhHHHHHhhh
Q psy18087 1 MSIWIESCIK-ETLPPSTELESN-LRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlg-e~l~~~~~~~e~-LkdGvvLckL~N 34 (74)
+++||.=+.. -++++. ++... =.||--||.|..
T Consensus 32 V~~WL~W~~~ef~L~~v-~~~~F~~m~G~~LC~ls~ 66 (98)
T 1x66_A 32 VRQWLEWAIKEYSLMEI-DTSFFQNMDGKELCKMNK 66 (98)
T ss_dssp HHHHHHHHHHHTTCCSC-CGGGGTTCCHHHHHHCCH
T ss_pred HHHHHHHHHHhcCCCCC-ChhhCCCCCHHHHHcCCH
Confidence 3678884444 355543 55555 479999999874
No 55
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=40.37 E-value=5.7 Score=23.81 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=21.2
Q ss_pred ChhHHHHHhc-cCCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIK-ETLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlg-e~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+++||.=+.. -++++. ++...=.||--||.|..
T Consensus 18 V~~WL~W~~~ef~L~~i-~~~~F~m~G~~LC~ls~ 51 (85)
T 1sv0_A 18 VLVFLRFCVREFDLPKL-DFDLFQMNGKRLCLLTR 51 (85)
T ss_dssp HHHHHHHHHHHTTCCCC-CGGGGCSCHHHHTTCCH
T ss_pred HHHHHHHHHHccCCCCC-ChhhCCCCHHHHHcCCH
Confidence 3578884443 355542 44444589999999874
No 56
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=39.23 E-value=8.2 Score=23.38 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=20.8
Q ss_pred hhHHHHHh-ccCCCCchHHHHhhhhhHHHHHhhh
Q psy18087 2 SIWIESCI-KETLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 2 k~WIe~vl-ge~l~~~~~~~e~LkdGvvLckL~N 34 (74)
++|+.=+. .-++++. ++...=.||--||.|..
T Consensus 32 ~~WL~W~~~ef~L~~v-~~~~f~m~G~~LC~ls~ 64 (91)
T 1sxd_A 32 LHWVVWVMKEFSMTDI-DLTTLNISGRELCSLNQ 64 (91)
T ss_dssp HHHHHHHHHHTTCCCS-CSGGGCSCHHHHHHSCH
T ss_pred HHHHHHHHHccCCCCC-ChhhCCCCHHHHHcCCH
Confidence 57887443 3456543 45555679999999874
No 57
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.97 E-value=10 Score=24.55 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=20.9
Q ss_pred ChhHHHHHhc-cCCCCchHHHHh-hhhhHHHHHhhh
Q psy18087 1 MSIWIESCIK-ETLPPSTELESN-LRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlg-e~l~~~~~~~e~-LkdGvvLckL~N 34 (74)
|++||.=+.. -++++. ++... =.||--||+|..
T Consensus 46 V~~WL~Wa~~ef~L~~i-d~~~Fq~mnGk~LC~Lsk 80 (128)
T 2ytu_A 46 VRQWLEWAIKEYSLMEI-DTSFFQNMDGKELCKMNK 80 (128)
T ss_dssp HHHHHHHHHHHTCCCSC-CCGGGSSCCTTHHHHCCH
T ss_pred HHHHHHHHHHhcCCCCC-ChHhCCCCCHHHHHcCCH
Confidence 3678884444 355542 45444 369999999874
No 58
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=30.80 E-value=7.7 Score=23.76 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=21.6
Q ss_pred ChhHHHHHh-ccCCCCchHHHHh-hhhhHHHHHhhh
Q psy18087 1 MSIWIESCI-KETLPPSTELESN-LRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vl-ge~l~~~~~~~e~-LkdGvvLckL~N 34 (74)
+++|+.-+. ..++++. ++... =.||--||.|..
T Consensus 35 V~~WL~W~~~ef~L~~i-~~~~F~~m~G~~LC~lt~ 69 (97)
T 1sxe_A 35 VRQWLEWAVKEYGLPDV-NILLFQNIDGKELCKMTK 69 (97)
T ss_dssp HHHHHHHHHHHHTCSSC-CGGGSTTCCHHHHTTCCH
T ss_pred HHHHHHHHHHhcCCCCC-CHHhcCCCCHHHHHhCCH
Confidence 357887443 3466543 55555 479999999875
No 59
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=28.55 E-value=13 Score=23.27 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=20.0
Q ss_pred hhHHHHHh-ccCCCCchHHHHhhhhhHHHHHhhh
Q psy18087 2 SIWIESCI-KETLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 2 k~WIe~vl-ge~l~~~~~~~e~LkdGvvLckL~N 34 (74)
++|+.=+. .-++++. ++...=.||--||.|..
T Consensus 50 ~~WL~W~~~ef~L~~v-~~~~F~m~G~~LC~ls~ 82 (110)
T 2jv3_A 50 RDWVMWAVNEFSLKGV-DFQKFCMSGAALCALGK 82 (110)
T ss_dssp HHHHHHHHHHHTCCCC-CTTTTCCCHHHHHHTHH
T ss_pred HHHHHHHHHhcCCCCC-ChhcCCCCHHHHHhCCH
Confidence 56777333 3355542 44444579999999874
No 60
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=26.26 E-value=24 Score=16.90 Aligned_cols=8 Identities=38% Similarity=0.638 Sum_probs=6.3
Q ss_pred HHHhhhhh
Q psy18087 19 LESNLRNG 26 (74)
Q Consensus 19 ~~e~LkdG 26 (74)
+-+|||||
T Consensus 6 lgqwlkdg 13 (26)
T 1rij_A 6 LGQWLKDG 13 (26)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 55799998
No 61
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=25.92 E-value=26 Score=17.63 Aligned_cols=11 Identities=27% Similarity=0.169 Sum_probs=8.5
Q ss_pred hHHHHhhhhhH
Q psy18087 17 TELESNLRNGI 27 (74)
Q Consensus 17 ~~~~e~LkdGv 27 (74)
.+|.+||+||-
T Consensus 12 kdFv~WL~ngk 22 (31)
T 3c5t_B 12 RLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHTTG
T ss_pred HHHHHHHHhCC
Confidence 37888998874
No 62
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}
Probab=23.25 E-value=13 Score=25.65 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=20.4
Q ss_pred ChhHHHHHhcc-CCCCchHHHHhhhhhHHHHHhh
Q psy18087 1 MSIWIESCIKE-TLPPSTELESNLRNGIVLAKLG 33 (74)
Q Consensus 1 ik~WIe~vlge-~l~~~~~~~e~LkdGvvLckL~ 33 (74)
+++|+.-+..+ ++++. ++...-.||--||.|.
T Consensus 20 V~~Wl~w~~~~f~l~~~-~~~~f~~~G~~Lc~m~ 52 (241)
T 2qb0_B 20 VAQWLKWAENEFSLRPI-DSNTFEMNGKALLLLT 52 (241)
T ss_dssp HHHHHHHHHHHTTCSCC-CTTTTCSCHHHHTTCC
T ss_pred HHHHHHHHHHhcCCCCC-CHHhcCCChHHHHHcC
Confidence 36788855443 56542 4555557888888874
No 63
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.42 E-value=15 Score=22.40 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=21.7
Q ss_pred ChhHHHHHhcc-CCC-CchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLP-PSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~-~~~~~~e~LkdGvvLckL~N 34 (74)
+++|+.=+..+ ++. ...++...-.||--||+|..
T Consensus 32 V~~WL~Wavke~~~dl~~i~~~~f~m~G~~LC~msk 67 (92)
T 2e8p_A 32 VLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCAL 67 (92)
T ss_dssp HHHHHHHHHHHTTCCCSSCCTTTCCCCSHHHHHSCH
T ss_pred HHHHHHHHHHHhCCCCCCCChhhcCCCHHHHHcCCH
Confidence 35788855543 442 12255555689999999875
No 64
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=20.00 E-value=13 Score=22.52 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=19.4
Q ss_pred ChhHHHHHhcc-CCCCchHHHHhhhhhHHHHHhhh
Q psy18087 1 MSIWIESCIKE-TLPPSTELESNLRNGIVLAKLGH 34 (74)
Q Consensus 1 ik~WIe~vlge-~l~~~~~~~e~LkdGvvLckL~N 34 (74)
+.+||.-+..+ ++++. ++...=-||-.||.|..
T Consensus 20 V~~WL~w~~~ef~L~~i-~~~~f~mdGk~Lc~Lt~ 53 (93)
T 2qar_B 20 VAQWLKWAENEFSLSPI-DSNTFEMNGKALLLLTK 53 (93)
T ss_dssp HHHHHHHHHHHTTCCCC-CGGGGCSCHHHHTTCCH
T ss_pred HHHHHHHHHHhcCCCCc-chhcCCCCHHHHHcCCH
Confidence 35788755543 34432 33333478888888763
Done!