RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18087
(74 letters)
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain. The CH domain is
found in both cytoskeletal proteins and signal
transduction proteins. The CH domain is involved in
actin binding in some members of the family. However in
calponins there is evidence that the CH domain is not
involved in its actin binding activity. Most member
proteins have from two to four copies of the CH domain,
however some proteins such as calponin have only a
single copy.
Length = 104
Score = 40.3 bits (95), Expect = 5e-06
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 4 WIESCIKETLP-PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADF-AVYN 55
WI + E P T +LR+G+ L L + L P ++ K+ F + N
Sbjct: 7 WINEVLGEYGGLPVTNFFEDLRDGLALCALLNKLRPGLIDLKKVNKNRFDKLEN 60
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which
may be present as a single copy or in tandem repeats
(which increases binding affinity). The CH domain is
found in cytoskeletal and signal transduction proteins,
including actin-binding proteins like spectrin,
alpha-actinin, dystrophin, utrophin, and fimbrin,
proteins essential for regulation of cell shape
(cortexillins), and signaling proteins (Vav).
Length = 107
Score = 39.2 bits (92), Expect = 1e-05
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 4 WIESCIKETLPP-STELESNLRNGIVLAKLGHYLDPEMVPESKIYD 48
WI + E P ++L++GI L KL + L P+++ + KI
Sbjct: 9 WINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINP 54
>gnl|CDD|214479 smart00033, CH, Calponin homology domain. Actin binding domains
present in duplicate at the N-termini of spectrin-like
proteins (including dystrophin, alpha-actinin). These
domains cross-link actin filaments into bundles and
networks. A calponin homology domain is predicted in
yeasst Cdc24p.
Length = 101
Score = 38.5 bits (90), Expect = 2e-05
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 4 WIESCIKETLPPS-TELESNLRNGIVLAKLGHYLDPEMVPESKI 46
W+ S + E P T S+L++G+ L L + L P +V + K+
Sbjct: 6 WVNSLLAEYDKPPVTNFSSDLKDGVALCALLNSLSPGLVDKKKV 49
>gnl|CDD|227586 COG5261, IQG1, Protein involved in regulation of cellular
morphogenesis/cytokinesis [Cell division and chromosome
partitioning / Signal transduction mechanisms].
Length = 1054
Score = 36.4 bits (84), Expect = 4e-04
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 3 IWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50
IWIE I+E LP E +LRNG+ LAKL +P++ + I+ AD
Sbjct: 51 IWIEEVIEEALPEL-CFEDSLRNGVFLAKLTQRFNPDLT--TVIFPAD 95
>gnl|CDD|173936 cd08177, MAR, Maleylacetate reductase is involved in many aromatic
compounds degradation pathways of aerobic microbes.
Maleylacetate reductases (MAR) play an important role in
the degradation of aromatic compounds in aerobic
microbes. In fungi and yeasts, the enzymes are involved
in the catabolism of compounds such as phenol, tyrosine,
benzoate, 4-hydroxybenzoate and resorcinol. In bacteria,
the enzymes contribute to the degradation of resorcinol,
2,4-dihydroxybenzoate ([beta]-resorcylate) and
2,6-dihydroxybenzoate ([gamma]-resorcylate) via
hydroxyquinol and maleylacetate. Maleylacetate
reductases catalyze NADH- or NADPH-dependent reduction,
at the carbon-carbon double bond, of maleylacetate or
2-chloromaleylacetate to 3-oxoadipate. In the case of
2-chloromaleylacetate, Maleylacetate reductases
initially catalyses the NAD(P)H-dependent dechlorination
to maleylacetate, which is then reduced to 3-oxoadipate.
This enzyme is a homodimer. It is inhibited by
thiol-blocking reagents such as p-chloromercuribenzoate
and Hg++, indicating that the cysteine residue is
probably necessary for the catalytic activity of
maleylacetate reductase.
Length = 337
Score = 28.7 bits (65), Expect = 0.18
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 34 HYLDPEMVPESKIYDADFAVY 54
DPE++P + IYD + +
Sbjct: 130 TGRDPEVLPRTVIYDPELTLT 150
>gnl|CDD|227526 COG5199, SCP1, Calponin [Cytoskeleton].
Length = 178
Score = 26.4 bits (58), Expect = 1.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 3 IWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDP 38
+WIE+ + E P +L S L++G+ L ++ + P
Sbjct: 20 LWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASP 55
>gnl|CDD|225430 COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism].
Length = 254
Score = 26.1 bits (58), Expect = 1.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 33 GHYLDPEMVPESKIYDADFA 52
G LDPE SK+YD DF+
Sbjct: 228 GDVLDPEGFRRSKLYDPDFS 247
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII
and plant B3 proteins. This family contains the
N-terminal DNA binding domain of type IIE restriction
endonuclease EcoRII-like proteins, the C-terminal DNA
binding domain of type IIS restriction endonuclease
BfiI-like proteins and plant-specific B3 proteins. Type
II restriction endonucleases are components of
restriction modification (RM) systems that protect
bacteria and archaea against invading foreign DNA. They
usually function as homodimers or homotetramers that
cleave DNA at defined sites of 4 to 8 bp in length, and
they require Mg2+, not ATP or GTP, for catalysis.
EcoRII is specific for the 5'-CCWGG sequence (W stands
for A or T). EcoRII consists of 2 domains, the
C-terminal catalytic/dimerization domain (EcoRII-C),
and the N-terminal effector DNA binding domain
(EcoRII-N). BfiI is unique in cleaving DNA at fixed
positions downstream of an asymmetric sequence in the
absence of Mg2+. BfiI consists of two discrete domains
with distinct functions: an N-terminal catalytic domain
with non-specific nuclease activity and dimerization
function that is more closely related to Nuc, an
EDTA-resistant nuclease from the phospholipase D (PLD)
superfamily; and a C-terminal domain that specifically
recognizes its target sequences, 5'-ACTGGG-3'. B3
proteins are a family of plant-specific transcription
factors, involved in a great variety of processes,
including seed development and auxin response.
Length = 109
Score = 25.3 bits (55), Expect = 2.7
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 2 SIWIESCIKETLPPSTELESNLRNGIVLA 30
++I I E PPS I L
Sbjct: 21 GLYIPKGIVEKFPPSINHTREANPSIFLT 49
>gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 25.2 bits (55), Expect = 3.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 5 IESCIKETLPPSTELESNLR 24
+E CI TLPP+ LE L
Sbjct: 12 VEVCITRTLPPALTLELGLE 31
>gnl|CDD|165159 PHA02800, PHA02800, hypothetical protein; Provisional.
Length = 161
Score = 24.5 bits (53), Expect = 6.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 36 LDPEMVPESKIYDADFAVYNRVAEKTEMLSHTQLT 70
++ +P SK Y DF Y+ +K QLT
Sbjct: 1 METNTLPFSKRYIHDFTDYDNFEKKNSFSMSYQLT 35
>gnl|CDD|200107 TIGR01465, cobM_cbiF, precorrin-4 C11-methyltransferase. This
model represents precorrin-4 C11-methyltransferase, one
of two methyltransferases commonly referred to as
precorrin-3 methylase (the other is precorrin-3B
C17-methyltransferase, EC 2.1.1.131). This enzyme
participates in the pathway toward the biosynthesis of
cobalamin and related products [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 247
Score = 24.6 bits (54), Expect = 6.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 33 GHYLDPEMVPESKIYDADF 51
G LDP + SK+YD DF
Sbjct: 224 GPALDPRIGKRSKLYDPDF 242
>gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated.
Length = 459
Score = 24.3 bits (54), Expect = 7.7
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 52 AVYNRVAEKTE 62
AVYNR EKT+
Sbjct: 17 AVYNRTPEKTD 27
>gnl|CDD|224193 COG1274, PckA, Phosphoenolpyruvate carboxykinase (GTP) [Energy
production and conversion].
Length = 608
Score = 23.9 bits (52), Expect = 9.1
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 4 WIESCIKETLPP-------STELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNR 56
WIE + T P S E L +V A L+PE P S + ++ + R
Sbjct: 23 WIEEVAELTEPDDVVVCDGSPEEYDYLCWKMVEAGEEIKLNPEKHPNSYLARSNPSDVAR 82
Query: 57 VAEKTEMLSHTQLTDG 72
V E+T + S + G
Sbjct: 83 VEERTFICSPKEEDAG 98
>gnl|CDD|215596 PLN03133, PLN03133, beta-1,3-galactosyltransferase; Provisional.
Length = 636
Score = 24.0 bits (52), Expect = 9.2
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 1 MSIWIESCIKETLPPSTELESNLRN-----GIVLAKLGHYLDP-EM 40
M IWI KE L E + + N G V+A HY P EM
Sbjct: 575 MGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVA---HYQSPREM 617
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.131 0.378
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,756,858
Number of extensions: 280819
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 16
Length of query: 74
Length of database: 10,937,602
Length adjustment: 44
Effective length of query: 30
Effective length of database: 8,986,026
Effective search space: 269580780
Effective search space used: 269580780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)