RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18087
(74 letters)
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical,
calmodulin-binding, cell membrane, membrane,
phosphoprotein, protein binding; 2.50A {Homo sapiens}
Length = 193
Score = 60.4 bits (146), Expect = 3e-13
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYN 55
W+E+C+ E LPP+TELE LRNG+ LAKLG++ P++V KIYD + Y
Sbjct: 55 WMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYK 106
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR
{Homo sapiens}
Length = 190
Score = 59.6 bits (144), Expect = 5e-13
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYN 55
W+E+C+ E LPP+TELE LRNG+ LAKLG++ P++V KIYD + Y
Sbjct: 33 WMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYK 84
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle,
cytokine; 2.22A {Schizosaccharomyces pombe} SCOP:
a.40.1.1
Length = 203
Score = 56.1 bits (135), Expect = 1e-11
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA 49
WIE C+ L P++ E +LRNG+VLA L P+ + KI+ +
Sbjct: 63 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI--KIFYS 106
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices,
bundle, protein binding; 2.21A {Schizosaccharomyces
pombe} SCOP: a.40.1.1
Length = 159
Score = 54.1 bits (130), Expect = 3e-11
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA 49
WIE C+ L P++ E +LRNG+VLA L P+ + KI+ +
Sbjct: 19 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI--KIFYS 62
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin
binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Length = 108
Score = 48.9 bits (117), Expect = 1e-09
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP 42
WIE + L++G++L +L + L P V
Sbjct: 11 WIEGATGRRIGD--NFMDGLKDGVILCELINKLQPGSVQ 47
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural
genomics, NPPSFA, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 136
Score = 43.3 bits (102), Expect = 4e-07
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNR 56
WIE + L++GI+L + + L P V KI ++ +
Sbjct: 25 WIEGVTGRRIGN--NFMDGLKDGIILCEFINKLQPGSVK--KINESTQNWHQL 73
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha,
NPPSFA, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens}
Length = 121
Score = 42.2 bits (99), Expect = 7e-07
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 4 WIESCIKETLP------PSTELESNLRNGIVLAKLGHYLDPEMVPESKIYD 48
W+ S P P L+S+L+NG+VL KL + L P V K
Sbjct: 14 WLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVE--KFCL 62
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix,
structural genomics, NPPSFA, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens}
Length = 146
Score = 39.9 bits (93), Expect = 7e-06
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA 49
WIE ++ P + + L++G +L L + L P VP KI +
Sbjct: 25 WIEGLTGLSIGP--DFQKGLKDGTILCTLMNKLQPGSVP--KINRS 66
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics,
northeast structural genomics consortiu PSI-biology,
calponin-homology domain; NMR {Homo sapiens}
Length = 126
Score = 39.6 bits (92), Expect = 8e-06
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 4 WIESC------IKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50
W+ + K P L+++L++G+VL +L L P + K+Y
Sbjct: 20 WLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIE--KVYPEP 70
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Length = 144
Score = 38.4 bits (89), Expect = 3e-05
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 4 WIESCIKETLPPST----ELESNLRNGIVLAKLGHYLDPEMVPESKIYD 48
WI + + L+NG++L+KL + L PE K+ +
Sbjct: 17 WIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPE 65
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Length = 155
Score = 35.7 bits (82), Expect = 2e-04
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 4 WIESCIKE----TLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDA 49
WI + ++ P ++ L++G VL +L + L PE K A
Sbjct: 25 WITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQA 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.025
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 15/46 (32%)
Query: 5 IESCIKET---LPPSTELESNLRNG---IVLAKLGHYLDPEMVPES 44
++ + +T LP ++E +L NG +V++ G P+S
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS--GP-------PQS 385
Score = 27.3 bits (60), Expect = 0.36
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 4 WIESCIKETLPPSTELESNLR--NGIVLAKLGHYL 36
W+E+ P L S I + +L HY+
Sbjct: 218 WLEN--PSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 30.3 bits (68), Expect = 0.034
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 21 SNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYN-----RVAEKTEMLSHTQLTDGED 74
++ +G+ L L H P++ + + A +A L +L D ED
Sbjct: 161 TSWSDGLALNALIHSHRPDLFDWNSVVSQQSATQRLEHAFNIARYQ--LGIEKLLDPED 217
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 29.2 bits (65), Expect = 0.071
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESK 45
W +K L+++L +G+ L L L + +
Sbjct: 55 WCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKH 96
Score = 25.0 bits (54), Expect = 2.6
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 21 SNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYN-----RVAEKTEMLSHTQLTDGED 74
+ ++G L L P + P+ +DA V N + A+ L Q+ E+
Sbjct: 193 RDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQADDW--LGIPQVITPEE 249
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction,
alternative splicing, calponin homology domain,
actin-binding, cell membrane; 1.05A {Homo sapiens} PDB:
2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Length = 131
Score = 27.5 bits (61), Expect = 0.23
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY 47
++ + + TELE+ +G+ L L L+ VP +
Sbjct: 30 FVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFF 73
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding,
phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1
a.40.1.1
Length = 275
Score = 27.2 bits (60), Expect = 0.41
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 14 PPSTELESNLRNGIVLAKLGHYLDPEMVPESKI 46
P + +L + +GIVL K+ + P+ + E I
Sbjct: 51 PNTDDLFKAVGDGIVLCKMINLSVPDTIDERAI 83
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology
domain, pleckst homology domain, C1 domain,
guanine-nucleotide releasing FA metal-binding; 2.73A
{Homo sapiens} PDB: 2d86_A
Length = 587
Score = 27.3 bits (60), Expect = 0.41
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 12/53 (22%)
Query: 4 WIESCIKETLPPS----------TELESNLRNGIVLAKLGHYLDPEMVPESKI 46
W+ C LPPS EL LR+G++L +L + L P + ++
Sbjct: 13 WLIQC--RVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAINLREV 63
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 26.9 bits (59), Expect = 0.48
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESK 45
W +K L+++L +G+ L L L + +
Sbjct: 28 WCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKY 69
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 26.6 bits (58), Expect = 0.78
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 1 MSIWIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY 47
+WI S + + ++RNG +L ++ + P V
Sbjct: 281 YRLWINSLGID--SYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHAS 325
Score = 26.6 bits (58), Expect = 0.84
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 14 PPSTELESNLRNGIVLAKLGHYLDPEMVPESKIY 47
P S +L +++G++L KL + P + E I
Sbjct: 34 PHSNQLYELVKDGVLLCKLINVAVPGTIDERAIN 67
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 26.1 bits (57), Expect = 0.97
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 4 WI-ESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYN-----RV 57
W ++ ++G+ L L H P+++ +K+ D + N V
Sbjct: 148 WCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDD-PIGNLNTAFEV 206
Query: 58 AEKTEMLSHTQLTDGED 74
AEK L ++ D ED
Sbjct: 207 AEK--YLDIPKMLDAED 221
Score = 26.1 bits (57), Expect = 1.2
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP 42
W S +++ +E + RNG+ L L + E +P
Sbjct: 35 WCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLP 73
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 25.6 bits (56), Expect = 1.7
Identities = 4/26 (15%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 25 NGIVLAKL-GHYLDPEMVPESKIYDA 49
+ + +++ GH+++ P + Y+
Sbjct: 111 HALDISQQEGHFIETHQSPLTNHYNK 136
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 25.2 bits (55), Expect = 2.1
Identities = 6/41 (14%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 4 WIESCIKETLPPS--TELESNLRNGIVLAKLGHYLDPEMVP 42
W + ++ +L+ ++ +G++LA++ + E +
Sbjct: 26 WANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE 66
>3abd_X REV3, HREV3, DNA polymerase zeta catalytic subunit; horma, DNA
replication, translesion DNA SYNT cell cycle, cell
division, mitosis, DNA damage; HET: DNA; 1.90A {Homo
sapiens} PDB: 3abe_Z*
Length = 52
Score = 24.2 bits (51), Expect = 2.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 11 ETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESK 45
++ P ST S +NG + + L P M P S+
Sbjct: 7 DSSPRSTSSPSQSKNGSFTPRTANILKPLMSPPSR 41
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy,
helical reconstruction, structural protein; 4.00A
{Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Length = 494
Score = 25.1 bits (54), Expect = 2.6
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 5/21 (23%)
Query: 43 ESKIYDADFAVYNRVAEKTEM 63
S+I D+D+A E + M
Sbjct: 450 RSRIEDSDYA-----TEVSNM 465
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A
{Rhodobacter capsulatus} PDB: 3nei_A
Length = 264
Score = 24.8 bits (55), Expect = 2.8
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 33 GHYLDPEMVPESKIYDADFA 52
G L E ES++Y D+
Sbjct: 228 GRSLATEDFDESRLYAGDYD 247
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA,
riken structural genomics/proteomics initiative,
unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Length = 164
Score = 23.9 bits (51), Expect = 6.0
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 4 WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEKTEM 63
W+++ +T P +++ L NG+ +A++ H +D ES + V + K
Sbjct: 17 WLQTF--KTASPCQDVKQ-LTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASN 73
Query: 64 LSH 66
L
Sbjct: 74 LKK 76
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 23.8 bits (50), Expect = 6.2
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 24/43 (55%)
Query: 10 KETLPPSTELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFA 52
K+ L +L+++L K+Y D A
Sbjct: 19 KQAL---KKLQASL---------------------KLYADDSA 37
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling,
lyase; HET: APC; 1.9A {Spirulina platensis} SCOP:
d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A*
1wc6_A*
Length = 219
Score = 23.7 bits (52), Expect = 7.3
Identities = 3/13 (23%), Positives = 5/13 (38%)
Query: 32 LGHYLDPEMVPES 44
H+ +VP
Sbjct: 6 HHHHHSSGLVPRG 18
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.378
Gapped
Lambda K H
0.267 0.0828 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,154,360
Number of extensions: 54191
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 34
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.2 bits)