RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18087
         (74 letters)



>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2
          {Fission yeast (Schizosaccharomyces pombe) [TaxId:
          4896]}
          Length = 159

 Score = 42.7 bits (100), Expect = 3e-07
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVP 42
          WIE C+   L P++  E +LRNG+VLA L     P+ + 
Sbjct: 19 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI 57


>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 144

 Score = 40.3 bits (94), Expect = 2e-06
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 4  WIESCIKETLPPSTELESN----LRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAE 59
          WI       +             L+NG++L+KL + L PE     K+ +   ++  +  E
Sbjct: 17 WIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPSMVFKQME 76


>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId:
          9031]}
          Length = 108

 Score = 38.7 bits (90), Expect = 4e-06
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 4  WIESCIKETLPPSTELESNLRNGIVLAKLGHYLDPEMVPE 43
          WIE      +         L++G++L +L + L P  V +
Sbjct: 11 WIEGATGRRIGD--NFMDGLKDGVILCELINKLQPGSVQK 48


>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 108

 Score = 26.9 bits (59), Expect = 0.13
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 17 TELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNRVAEK--TEMLSHTQLTDGED 74
              ++ R+G+    L H   P+++   K+  ++     + A     + L  T+L D ED
Sbjct: 24 HNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPED 83


>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 505

 Score = 26.2 bits (57), Expect = 0.40
 Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 4   WIESCIKETLPPS--TELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD 50
           W    +K    P   +    ++ +G     L + L PE+   + +   D
Sbjct: 161 WFNYHLKAANWPRTVSNFSKDVSDGENYTVLLNQLAPELCSRAPLQTTD 209



 Score = 23.1 bits (49), Expect = 4.6
 Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 14/57 (24%)

Query: 4  WIESCIKE---------TLPPSTELESNLRNGIVLAKL-----GHYLDPEMVPESKI 46
           I S +               + E     ++G++L+KL        +D  ++ + + 
Sbjct: 12 HINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRN 68


>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 110

 Score = 24.5 bits (53), Expect = 1.1
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 17 TELESNLRNGIVLAKLGHYLDPEMVPESKIYDAD----FAVYNRVAEKTEMLSHTQLTDG 72
              ++ R+G +   + H   P ++  +K+Y             VAE+   L  T+L D 
Sbjct: 28 DNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAER--DLGVTRLLDP 85

Query: 73 ED 74
          ED
Sbjct: 86 ED 87


>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking
          domain {Thale cress (Arabidopsis thaliana) [TaxId:
          3702]}
          Length = 500

 Score = 24.6 bits (53), Expect = 1.2
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 9/52 (17%)

Query: 4  WIESCIKETL---------PPSTELESNLRNGIVLAKLGHYLDPEMVPESKI 46
           I   + +           P S +L   +++G++L KL +   P  + E  I
Sbjct: 9  HINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAI 60


>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 127

 Score = 24.1 bits (52), Expect = 1.6
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 17 TELESNLRNGIVLAKLGHYLDPEMVPESKIYDADFAVYNR---VAEKTEMLSHTQLTDGE 73
              ++  +G+ L  L H   P++   + +     A              L   +L D E
Sbjct: 38 INFTTSWSDGLALNALIHSHRPDLFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPE 97

Query: 74 D 74
          D
Sbjct: 98 D 98


>d1riia_ c.60.1.1 (A:) Phosphoglycerate mutase {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 243

 Score = 22.2 bits (46), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 3/22 (13%)

Query: 18  ELESNLRNGIVLAKLGHYLDPE 39
           +L+S +R    L + G YLDPE
Sbjct: 215 DLDSAMR---PLVRGGTYLDPE 233


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 278,259
Number of extensions: 10119
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 10
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)