Query psy18088
Match_columns 166
No_of_seqs 181 out of 1198
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 22:17:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0194 Gmk Guanylate kinase [ 100.0 2.2E-29 4.8E-34 199.7 7.8 104 59-164 3-113 (191)
2 PRK14737 gmk guanylate kinase; 100.0 5.3E-29 1.2E-33 197.7 7.1 105 59-164 3-114 (186)
3 PF00625 Guanylate_kin: Guanyl 99.9 1.1E-28 2.3E-33 193.8 5.3 105 59-163 1-112 (183)
4 smart00072 GuKc Guanylate kina 99.9 1.9E-26 4.2E-31 181.4 8.2 106 60-165 2-114 (184)
5 KOG0609|consensus 99.9 8.4E-26 1.8E-30 200.5 6.4 142 13-165 298-454 (542)
6 PLN02772 guanylate kinase 99.9 1.5E-25 3.3E-30 195.3 7.0 105 59-163 134-245 (398)
7 PRK14738 gmk guanylate kinase; 99.9 5.5E-24 1.2E-28 170.7 7.5 105 59-164 12-123 (206)
8 cd00071 GMPK Guanosine monopho 99.9 3.9E-23 8.5E-28 156.4 6.6 103 62-164 1-110 (137)
9 PRK00300 gmk guanylate kinase; 99.8 7.4E-20 1.6E-24 144.9 7.4 105 59-164 4-115 (205)
10 TIGR03263 guanyl_kin guanylate 99.8 4E-19 8.7E-24 137.9 7.1 103 60-163 1-110 (180)
11 KOG0707|consensus 99.8 1.5E-19 3.2E-24 147.4 4.8 99 61-159 38-143 (231)
12 COG1116 TauB ABC-type nitrate/ 99.5 1.2E-15 2.5E-20 126.1 1.8 108 30-155 3-124 (248)
13 COG3842 PotA ABC-type spermidi 99.5 1E-14 2.2E-19 126.2 4.2 109 30-155 5-130 (352)
14 PRK10078 ribose 1,5-bisphospho 99.5 5.2E-14 1.1E-18 110.7 5.5 84 60-147 2-87 (186)
15 COG3709 Uncharacterized compon 99.5 1.3E-13 2.8E-18 108.1 7.3 101 58-162 3-116 (192)
16 COG1125 OpuBA ABC-type proline 99.5 9.9E-14 2.2E-18 115.6 6.9 113 30-159 1-132 (309)
17 COG3839 MalK ABC-type sugar tr 99.4 7.4E-14 1.6E-18 120.3 2.5 108 30-154 3-126 (338)
18 TIGR02322 phosphon_PhnN phosph 99.4 8.2E-13 1.8E-17 102.6 7.1 83 61-147 2-88 (179)
19 COG1136 SalX ABC-type antimicr 99.3 5.5E-12 1.2E-16 103.4 7.0 98 42-156 18-136 (226)
20 COG1127 Ttg2A ABC-type transpo 99.3 6.8E-12 1.5E-16 103.6 7.2 114 30-160 8-143 (263)
21 KOG0058|consensus 99.3 3.8E-12 8.1E-17 117.5 5.5 101 29-146 464-575 (716)
22 COG1126 GlnQ ABC-type polar am 99.3 9.2E-12 2E-16 101.6 6.9 109 30-155 2-130 (240)
23 TIGR02868 CydC thiol reductant 99.2 9.5E-12 2.1E-16 111.6 5.9 106 30-153 334-451 (529)
24 COG1132 MdlB ABC-type multidru 99.2 3E-11 6.6E-16 109.4 6.9 103 31-150 329-443 (567)
25 TIGR03797 NHPM_micro_ABC2 NHPM 99.2 2.7E-11 5.9E-16 112.0 6.5 107 30-153 451-569 (686)
26 PRK11174 cysteine/glutathione 99.2 3.9E-11 8.5E-16 108.9 5.9 106 30-153 349-466 (588)
27 COG3840 ThiQ ABC-type thiamine 99.1 2.3E-11 4.9E-16 97.5 3.5 101 34-152 5-120 (231)
28 PRK08356 hypothetical protein; 99.1 2.7E-11 5.9E-16 96.0 3.5 75 61-138 6-81 (195)
29 COG2274 SunT ABC-type bacterio 99.1 3.9E-11 8.4E-16 112.1 5.0 102 29-147 470-581 (709)
30 TIGR00958 3a01208 Conjugate Tr 99.1 7.3E-11 1.6E-15 110.0 6.7 106 30-152 478-597 (711)
31 PRK11176 lipid transporter ATP 99.1 8.1E-11 1.7E-15 106.7 6.5 107 30-153 341-461 (582)
32 COG2884 FtsE Predicted ATPase 99.1 3.5E-11 7.7E-16 96.7 3.5 107 30-153 1-129 (223)
33 TIGR03796 NHPM_micro_ABC1 NHPM 99.1 9.2E-11 2E-15 108.8 6.1 108 29-153 476-596 (710)
34 TIGR01193 bacteriocin_ABC ABC- 99.1 7.7E-11 1.7E-15 109.4 5.4 107 30-153 473-592 (708)
35 COG4525 TauB ABC-type taurine 99.1 3E-11 6.5E-16 97.9 2.3 99 37-155 12-126 (259)
36 COG1135 AbcC ABC-type metal io 99.1 1.5E-10 3.3E-15 98.6 6.6 107 31-154 2-134 (339)
37 COG1131 CcmA ABC-type multidru 99.1 3.1E-11 6.7E-16 102.0 2.2 107 31-155 5-130 (293)
38 PTZ00265 multidrug resistance 99.1 1.3E-10 2.7E-15 115.8 6.3 118 30-152 1165-1338(1466)
39 KOG0055|consensus 99.1 8.2E-11 1.8E-15 114.0 4.8 102 29-147 986-1101(1228)
40 COG1120 FepC ABC-type cobalami 99.1 1.9E-10 4.1E-15 96.0 6.0 113 31-160 3-137 (258)
41 PRK11160 cysteine/glutathione 99.1 1.6E-10 3.5E-15 105.2 6.1 107 30-153 338-457 (574)
42 TIGR02857 CydD thiol reductant 99.1 2.4E-10 5.3E-15 102.5 6.6 106 30-152 320-438 (529)
43 TIGR03375 type_I_sec_LssB type 99.1 1.5E-10 3.3E-15 107.2 5.5 107 30-153 463-582 (694)
44 KOG0055|consensus 99.0 1.1E-10 2.3E-15 113.2 3.9 104 27-147 347-464 (1228)
45 PRK11650 ugpC glycerol-3-phosp 99.0 5.5E-11 1.2E-15 103.0 1.7 107 30-153 3-126 (356)
46 PRK10790 putative multidrug tr 99.0 2.6E-10 5.5E-15 103.8 6.1 107 30-153 340-457 (592)
47 PRK11432 fbpC ferric transport 99.0 4.7E-11 1E-15 103.3 1.2 107 30-153 6-128 (351)
48 TIGR03265 PhnT2 putative 2-ami 99.0 4.8E-11 1E-15 103.3 1.2 107 30-153 4-126 (353)
49 COG1118 CysA ABC-type sulfate/ 99.0 8.2E-11 1.8E-15 100.2 2.3 107 31-154 3-130 (345)
50 COG4175 ProV ABC-type proline/ 99.0 3.3E-10 7.2E-15 97.1 5.6 97 42-155 41-158 (386)
51 PRK13657 cyclic beta-1,2-gluca 99.0 3.6E-10 7.9E-15 102.8 6.0 107 30-153 334-452 (588)
52 TIGR02203 MsbA_lipidA lipid A 99.0 4.1E-10 8.9E-15 101.6 6.3 108 30-154 330-451 (571)
53 COG4987 CydC ABC-type transpor 99.0 3.3E-10 7.1E-15 102.2 5.3 108 30-154 336-456 (573)
54 COG0411 LivG ABC-type branched 99.0 3.6E-10 7.9E-15 93.4 4.9 87 30-133 4-99 (250)
55 TIGR02314 ABC_MetN D-methionin 99.0 4.9E-10 1.1E-14 96.8 5.9 106 31-153 2-132 (343)
56 PRK09452 potA putrescine/sperm 99.0 1.1E-10 2.4E-15 101.9 1.7 107 30-153 14-136 (375)
57 COG4619 ABC-type uncharacteriz 99.0 4.6E-10 9.9E-15 89.2 4.8 93 42-152 16-123 (223)
58 COG4988 CydD ABC-type transpor 99.0 5.1E-10 1.1E-14 101.5 5.7 102 35-153 325-438 (559)
59 TIGR02204 MsbA_rel ABC transpo 99.0 6.1E-10 1.3E-14 100.7 6.2 106 30-152 337-456 (576)
60 PRK00091 miaA tRNA delta(2)-is 99.0 8.8E-11 1.9E-15 100.2 0.6 69 59-127 3-81 (307)
61 PRK10575 iron-hydroxamate tran 99.0 6.2E-10 1.3E-14 92.0 5.1 58 22-84 3-62 (265)
62 TIGR01846 type_I_sec_HlyB type 99.0 9.4E-10 2E-14 102.1 6.4 107 29-152 454-573 (694)
63 TIGR03258 PhnT 2-aminoethylpho 99.0 1.9E-10 4.1E-15 100.0 1.3 110 28-154 3-130 (362)
64 TIGR00960 3a0501s02 Type II (G 98.9 2.6E-10 5.6E-15 91.1 1.8 49 31-84 2-54 (216)
65 TIGR02315 ABC_phnC phosphonate 98.9 6.4E-10 1.4E-14 90.2 3.9 49 31-84 2-53 (243)
66 PRK10851 sulfate/thiosulfate t 98.9 3.2E-10 7E-15 98.1 2.3 106 31-153 3-128 (353)
67 PRK11153 metN DL-methionine tr 98.9 1.3E-09 2.8E-14 93.9 5.8 106 31-153 2-132 (343)
68 PRK11607 potG putrescine trans 98.9 2.6E-10 5.6E-15 99.6 1.3 107 30-153 19-141 (377)
69 PRK10789 putative multidrug tr 98.9 1.8E-09 4E-14 98.1 6.8 106 30-152 313-431 (569)
70 cd03261 ABC_Org_Solvent_Resist 98.9 3.8E-10 8.3E-15 91.3 2.1 47 33-84 3-51 (235)
71 COG1124 DppF ABC-type dipeptid 98.9 2.1E-09 4.6E-14 88.9 6.5 107 30-161 3-140 (252)
72 PLN03232 ABC transporter C fam 98.9 1.5E-09 3.2E-14 108.5 6.6 108 29-153 1233-1352(1495)
73 PRK13537 nodulation ABC transp 98.9 1.1E-09 2.5E-14 92.8 5.0 108 30-155 7-132 (306)
74 PRK13538 cytochrome c biogenes 98.9 8.2E-10 1.8E-14 87.8 3.6 105 31-153 2-121 (204)
75 cd03256 ABC_PhnC_transporter A 98.9 6.1E-10 1.3E-14 90.1 2.6 46 33-83 3-51 (241)
76 cd03258 ABC_MetN_methionine_tr 98.9 5.7E-10 1.2E-14 90.1 2.4 60 31-107 2-69 (233)
77 TIGR01192 chvA glucan exporter 98.9 2.4E-09 5.2E-14 97.8 6.6 106 30-152 334-451 (585)
78 PRK11300 livG leucine/isoleuci 98.9 1.6E-09 3.4E-14 88.6 4.7 49 30-83 5-55 (255)
79 PRK11000 maltose/maltodextrin 98.9 4.5E-10 9.8E-15 97.6 1.5 106 31-153 4-125 (369)
80 PLN03130 ABC transporter C fam 98.9 2.2E-09 4.8E-14 107.9 6.5 107 29-152 1236-1354(1622)
81 PRK13536 nodulation factor exp 98.9 1.3E-09 2.8E-14 94.0 4.1 108 30-155 41-166 (340)
82 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.9 4.7E-10 1E-14 89.6 1.4 47 33-84 3-55 (218)
83 TIGR01194 cyc_pep_trnsptr cycl 98.9 1.8E-09 3.8E-14 98.0 5.2 106 30-152 337-455 (555)
84 PRK13539 cytochrome c biogenes 98.9 1.3E-09 2.8E-14 86.9 3.7 107 30-153 2-119 (207)
85 COG3638 ABC-type phosphate/pho 98.9 1.5E-09 3.3E-14 89.6 4.1 70 30-116 3-77 (258)
86 COG1121 ZnuC ABC-type Mn/Zn tr 98.9 2.1E-09 4.6E-14 89.5 4.9 47 30-81 4-52 (254)
87 cd03218 ABC_YhbG The ABC trans 98.9 3.9E-09 8.4E-14 85.0 6.3 47 32-83 2-50 (232)
88 KOG0056|consensus 98.9 9.7E-10 2.1E-14 99.0 3.1 96 29-141 536-640 (790)
89 PRK10522 multidrug transporter 98.9 1.5E-09 3.3E-14 98.1 4.4 107 30-153 322-436 (547)
90 PTZ00243 ABC transporter; Prov 98.9 2.5E-09 5.4E-14 107.3 6.2 108 29-153 1307-1426(1560)
91 cd03263 ABC_subfamily_A The AB 98.9 3.1E-09 6.7E-14 85.0 5.4 47 33-84 3-53 (220)
92 cd03219 ABC_Mj1267_LivG_branch 98.9 2.2E-09 4.7E-14 86.7 4.5 46 33-83 3-50 (236)
93 COG4181 Predicted ABC-type tra 98.9 1.5E-09 3.2E-14 86.6 3.3 95 42-153 23-138 (228)
94 cd03268 ABC_BcrA_bacitracin_re 98.9 3.5E-09 7.6E-14 84.1 5.4 102 33-153 3-118 (208)
95 TIGR01842 type_I_sec_PrtD type 98.9 3.7E-09 8E-14 95.5 6.3 105 30-151 316-433 (544)
96 PRK13548 hmuV hemin importer A 98.9 4.3E-09 9.4E-14 86.7 6.0 49 31-84 3-53 (258)
97 TIGR00957 MRP_assoc_pro multi 98.9 4E-09 8.6E-14 105.6 6.8 107 29-152 1283-1401(1522)
98 KOG0057|consensus 98.9 1.7E-09 3.8E-14 97.7 3.8 106 29-152 350-467 (591)
99 cd03269 ABC_putative_ATPase Th 98.9 9.3E-10 2E-14 87.5 1.9 46 33-83 3-50 (210)
100 cd03266 ABC_NatA_sodium_export 98.9 1.7E-09 3.8E-14 86.3 3.4 48 31-83 2-55 (218)
101 PRK10908 cell division protein 98.9 1.9E-09 4.2E-14 86.5 3.7 49 31-84 2-53 (222)
102 TIGR03740 galliderm_ABC gallid 98.9 1.2E-09 2.6E-14 87.7 2.5 46 33-83 3-50 (223)
103 PRK11248 tauB taurine transpor 98.8 1.2E-09 2.5E-14 90.2 2.4 48 31-83 2-51 (255)
104 TIGR02211 LolD_lipo_ex lipopro 98.8 1E-09 2.2E-14 87.8 1.8 48 32-84 3-56 (221)
105 PRK11629 lolD lipoprotein tran 98.8 1E-09 2.2E-14 88.9 1.7 50 30-84 5-60 (233)
106 PRK09536 btuD corrinoid ABC tr 98.8 3E-09 6.5E-14 93.8 4.9 109 30-155 3-133 (402)
107 cd03259 ABC_Carb_Solutes_like 98.8 9.2E-10 2E-14 87.7 1.5 46 33-83 3-50 (213)
108 TIGR01288 nodI ATP-binding ABC 98.8 1.4E-09 3.1E-14 91.7 2.7 50 30-84 4-55 (303)
109 TIGR03522 GldA_ABC_ATP gliding 98.8 3.4E-09 7.4E-14 89.4 4.9 107 31-155 3-127 (301)
110 TIGR03411 urea_trans_UrtD urea 98.8 4.1E-09 9E-14 85.5 5.2 49 30-83 2-52 (242)
111 PRK13541 cytochrome c biogenes 98.8 1.3E-09 2.8E-14 86.1 2.1 49 31-84 2-51 (195)
112 cd03293 ABC_NrtD_SsuB_transpor 98.8 7.5E-10 1.6E-14 88.8 0.7 47 33-84 3-55 (220)
113 cd03226 ABC_cobalt_CbiO_domain 98.8 2.7E-09 5.8E-14 84.7 3.9 45 35-84 4-51 (205)
114 PRK11247 ssuB aliphatic sulfon 98.8 1.1E-09 2.3E-14 90.8 1.3 106 30-153 12-125 (257)
115 TIGR01186 proV glycine betaine 98.8 1.2E-09 2.6E-14 95.1 1.7 94 43-153 7-121 (363)
116 COG4674 Uncharacterized ABC-ty 98.8 5.6E-09 1.2E-13 84.7 5.4 108 30-154 5-140 (249)
117 cd03296 ABC_CysA_sulfate_impor 98.8 1.5E-09 3.2E-14 88.2 2.0 48 31-83 3-52 (239)
118 cd03260 ABC_PstB_phosphate_tra 98.8 1.2E-09 2.6E-14 87.9 1.5 46 33-83 3-50 (227)
119 TIGR01189 ccmA heme ABC export 98.8 2.4E-09 5.2E-14 84.6 3.2 47 33-84 3-51 (198)
120 TIGR03005 ectoine_ehuA ectoine 98.8 1.3E-09 2.9E-14 89.1 1.7 48 32-84 2-51 (252)
121 PRK13650 cbiO cobalt transport 98.8 3.9E-09 8.4E-14 88.1 4.5 50 30-84 4-58 (279)
122 PRK09493 glnQ glutamine ABC tr 98.8 1.9E-09 4.1E-14 87.5 2.4 49 31-84 2-52 (240)
123 cd03265 ABC_DrrA DrrA is the A 98.8 2.9E-09 6.2E-14 85.4 3.4 47 32-83 2-50 (220)
124 TIGR03864 PQQ_ABC_ATP ABC tran 98.8 3.3E-09 7.1E-14 86.0 3.7 48 31-83 2-51 (236)
125 PRK15079 oligopeptide ABC tran 98.8 6.8E-09 1.5E-13 89.1 5.8 109 30-155 8-154 (331)
126 cd03295 ABC_OpuCA_Osmoprotecti 98.8 7.4E-09 1.6E-13 84.2 5.5 104 33-153 3-125 (242)
127 PRK10253 iron-enterobactin tra 98.8 8.5E-09 1.8E-13 85.2 6.0 50 30-84 7-58 (265)
128 TIGR02673 FtsE cell division A 98.8 5.7E-09 1.2E-13 83.1 4.7 49 31-84 2-53 (214)
129 cd03231 ABC_CcmA_heme_exporter 98.8 3.9E-09 8.4E-14 83.8 3.8 104 32-153 2-117 (201)
130 PRK13647 cbiO cobalt transport 98.8 4.1E-09 9E-14 87.7 3.9 50 30-84 4-56 (274)
131 PRK14250 phosphate ABC transpo 98.8 8.8E-09 1.9E-13 83.9 5.6 48 31-83 4-53 (241)
132 PRK13547 hmuV hemin importer A 98.8 1E-08 2.2E-13 85.6 6.1 48 31-83 2-51 (272)
133 cd03301 ABC_MalK_N The N-termi 98.8 1.8E-09 3.9E-14 85.9 1.4 46 33-83 3-50 (213)
134 PRK10070 glycine betaine trans 98.8 1.5E-09 3.2E-14 95.6 0.9 96 42-154 41-157 (400)
135 COG4604 CeuD ABC-type enteroch 98.8 8.4E-09 1.8E-13 83.8 5.2 112 31-159 2-133 (252)
136 PRK11144 modC molybdate transp 98.8 2E-09 4.4E-14 92.9 1.7 102 35-154 5-121 (352)
137 PRK10895 lipopolysaccharide AB 98.8 3.5E-09 7.6E-14 86.0 2.8 50 30-84 3-54 (241)
138 TIGR03873 F420-0_ABC_ATP propo 98.8 9.9E-09 2.1E-13 84.2 5.4 48 32-84 3-52 (256)
139 PRK10771 thiQ thiamine transpo 98.8 4.3E-09 9.4E-14 85.1 3.0 48 31-84 2-50 (232)
140 PRK13635 cbiO cobalt transport 98.8 7.8E-09 1.7E-13 86.4 4.6 50 30-84 5-58 (279)
141 cd03298 ABC_ThiQ_thiamine_tran 98.8 5E-09 1.1E-13 83.3 3.3 46 33-84 3-49 (211)
142 PRK11124 artP arginine transpo 98.8 5.9E-09 1.3E-13 84.7 3.5 49 31-84 3-53 (242)
143 TIGR03608 L_ocin_972_ABC putat 98.7 1.8E-09 3.9E-14 85.4 0.4 38 42-84 11-49 (206)
144 PRK10762 D-ribose transporter 98.7 2.8E-09 6E-14 95.5 1.6 49 30-83 4-54 (501)
145 PRK15439 autoinducer 2 ABC tra 98.7 6.4E-09 1.4E-13 93.5 3.9 106 30-152 11-131 (510)
146 TIGR01188 drrA daunorubicin re 98.7 3.8E-09 8.2E-14 89.1 2.3 94 43-154 7-117 (302)
147 cd03224 ABC_TM1139_LivF_branch 98.7 3.5E-09 7.7E-14 84.6 1.8 47 33-84 3-51 (222)
148 PRK11231 fecE iron-dicitrate t 98.7 1.5E-08 3.3E-13 83.1 5.4 48 31-83 3-52 (255)
149 TIGR03410 urea_trans_UrtE urea 98.7 5.3E-09 1.1E-13 84.3 2.5 47 33-84 3-51 (230)
150 PRK13640 cbiO cobalt transport 98.7 1.5E-08 3.3E-13 84.7 5.1 50 29-83 4-57 (282)
151 PRK09984 phosphonate/organopho 98.7 9.7E-09 2.1E-13 84.6 3.8 49 30-83 4-54 (262)
152 PRK14247 phosphate ABC transpo 98.7 1.7E-08 3.7E-13 82.3 5.1 47 31-82 4-52 (250)
153 COG4608 AppF ABC-type oligopep 98.7 1.5E-08 3.3E-13 84.9 4.7 55 42-113 26-83 (268)
154 TIGR01277 thiQ thiamine ABC tr 98.7 5E-09 1.1E-13 83.7 1.6 46 33-84 3-49 (213)
155 PRK10584 putative ABC transpor 98.7 1.2E-08 2.6E-13 82.1 3.8 50 30-84 6-61 (228)
156 cd03292 ABC_FtsE_transporter F 98.7 1.3E-08 2.9E-13 80.8 4.0 47 33-84 3-52 (214)
157 cd03264 ABC_drug_resistance_li 98.7 1.1E-08 2.3E-13 81.5 3.4 46 33-84 3-50 (211)
158 TIGR02769 nickel_nikE nickel i 98.7 1.7E-08 3.8E-13 83.4 4.8 49 31-84 3-62 (265)
159 PRK11614 livF leucine/isoleuci 98.7 4.9E-09 1.1E-13 84.9 1.4 50 30-84 5-56 (237)
160 PRK09700 D-allose transporter 98.7 8.3E-09 1.8E-13 92.6 3.0 50 30-84 5-56 (510)
161 COG1117 PstB ABC-type phosphat 98.7 2.3E-08 4.9E-13 82.0 5.1 91 35-138 12-113 (253)
162 COG0396 sufC Cysteine desulfur 98.7 2E-08 4.3E-13 82.7 4.5 111 30-158 3-139 (251)
163 cd03244 ABCC_MRP_domain2 Domai 98.7 3.3E-08 7.2E-13 79.1 5.7 49 31-84 3-55 (221)
164 cd03257 ABC_NikE_OppD_transpor 98.7 1.4E-08 3.1E-13 81.3 3.6 49 31-84 2-56 (228)
165 PRK13652 cbiO cobalt transport 98.7 2.9E-08 6.3E-13 82.7 5.6 50 30-84 3-55 (277)
166 PRK10247 putative ABC transpor 98.7 1.4E-08 3.1E-13 81.9 3.6 49 30-83 7-57 (225)
167 cd03289 ABCC_CFTR2 The CFTR su 98.7 2.2E-08 4.8E-13 83.9 4.8 105 31-154 3-120 (275)
168 cd03225 ABC_cobalt_CbiO_domain 98.7 1.4E-08 2.9E-13 80.8 3.3 45 35-84 4-52 (211)
169 TIGR01271 CFTR_protein cystic 98.7 2.2E-08 4.8E-13 100.2 5.4 107 29-153 1216-1334(1490)
170 KOG0708|consensus 98.7 8.3E-09 1.8E-13 89.3 2.1 98 50-164 177-283 (359)
171 PRK00098 GTPase RsgA; Reviewed 98.7 1.2E-08 2.7E-13 86.2 2.9 98 60-158 164-284 (298)
172 COG0410 LivF ABC-type branched 98.7 2.1E-08 4.6E-13 82.4 4.2 87 30-133 3-98 (237)
173 PRK13549 xylose transporter AT 98.7 1E-08 2.3E-13 91.9 2.5 49 30-83 5-55 (506)
174 cd03248 ABCC_TAP TAP, the Tran 98.7 2.3E-08 5E-13 80.3 4.1 52 27-83 8-64 (226)
175 COG4152 ABC-type uncharacteriz 98.7 1.7E-08 3.6E-13 84.2 3.3 100 30-146 2-111 (300)
176 cd03294 ABC_Pro_Gly_Bertaine T 98.7 5.2E-09 1.1E-13 86.8 0.3 46 34-84 28-75 (269)
177 TIGR02142 modC_ABC molybdenum 98.6 5.4E-09 1.2E-13 90.3 0.4 44 35-84 4-48 (354)
178 PRK13632 cbiO cobalt transport 98.6 1.6E-08 3.4E-13 84.0 3.0 50 29-83 6-59 (271)
179 cd03299 ABC_ModC_like Archeal 98.6 6.7E-09 1.5E-13 84.3 0.8 47 33-84 3-50 (235)
180 PRK13642 cbiO cobalt transport 98.6 3E-08 6.5E-13 82.6 4.7 50 30-84 4-58 (277)
181 PTZ00265 multidrug resistance 98.6 3E-08 6.6E-13 99.1 5.5 90 30-136 382-483 (1466)
182 COG1122 CbiO ABC-type cobalt t 98.6 2.1E-08 4.5E-13 82.7 3.6 50 30-84 3-55 (235)
183 TIGR01978 sufC FeS assembly AT 98.6 2.7E-08 5.8E-13 80.6 4.2 46 32-82 2-49 (243)
184 cd03214 ABC_Iron-Siderophores_ 98.6 2.6E-08 5.7E-13 77.8 4.0 57 34-107 3-63 (180)
185 PRK11831 putative ABC transpor 98.6 2E-08 4.3E-13 83.3 3.5 49 30-83 7-57 (269)
186 cd03300 ABC_PotA_N PotA is an 98.6 1.1E-08 2.5E-13 82.7 2.0 47 33-84 3-51 (232)
187 PRK13638 cbiO cobalt transport 98.6 2E-08 4.3E-13 83.3 3.4 49 31-84 2-52 (271)
188 PRK15112 antimicrobial peptide 98.6 1.8E-08 3.9E-13 83.4 3.0 50 30-84 4-64 (267)
189 TIGR02324 CP_lyasePhnL phospho 98.6 2.2E-08 4.9E-13 80.3 3.4 48 31-83 2-58 (224)
190 PRK11308 dppF dipeptide transp 98.6 2.5E-08 5.4E-13 85.5 3.8 49 30-83 5-65 (327)
191 TIGR03415 ABC_choXWV_ATP choli 98.6 1.8E-08 3.8E-13 88.4 2.9 95 42-153 37-156 (382)
192 PRK13540 cytochrome c biogenes 98.6 2E-08 4.4E-13 79.5 3.0 49 31-84 2-52 (200)
193 PRK11288 araG L-arabinose tran 98.6 1E-08 2.2E-13 91.9 1.3 50 30-84 4-55 (501)
194 COG1129 MglA ABC-type sugar tr 98.6 2E-08 4.4E-13 90.5 3.2 88 30-134 8-104 (500)
195 CHL00131 ycf16 sulfate ABC tra 98.6 2.7E-08 5.9E-13 81.1 3.7 51 27-82 4-56 (252)
196 COG4559 ABC-type hemin transpo 98.6 5.2E-08 1.1E-12 79.9 5.2 69 31-116 2-74 (259)
197 cd03262 ABC_HisP_GlnQ_permease 98.6 2.6E-08 5.6E-13 79.1 3.4 47 33-84 3-51 (213)
198 PRK10419 nikE nickel transport 98.6 3.7E-08 8E-13 81.7 4.3 50 30-84 3-63 (268)
199 TIGR01184 ntrCD nitrate transp 98.6 1.7E-08 3.6E-13 81.9 2.1 34 46-84 2-36 (230)
200 PRK11264 putative amino-acid A 98.6 2.6E-08 5.7E-13 81.2 3.2 50 30-84 3-54 (250)
201 cd03235 ABC_Metallic_Cations A 98.6 2.1E-08 4.5E-13 79.9 2.5 45 35-84 4-50 (213)
202 PRK13646 cbiO cobalt transport 98.6 2.7E-08 5.9E-13 83.3 3.1 49 31-84 3-58 (286)
203 COG4133 CcmA ABC-type transpor 98.6 5.7E-08 1.2E-12 78.0 4.5 93 43-152 16-121 (209)
204 PRK13648 cbiO cobalt transport 98.6 4.2E-08 9.1E-13 81.2 3.9 50 30-84 7-60 (269)
205 PRK11701 phnK phosphonate C-P 98.6 2.3E-08 4.9E-13 82.2 2.2 50 30-84 6-57 (258)
206 PRK13643 cbiO cobalt transport 98.6 3.2E-08 6.9E-13 83.1 3.1 49 31-84 2-57 (288)
207 cd03252 ABCC_Hemolysin The ABC 98.6 4E-08 8.6E-13 79.5 3.6 47 33-84 3-53 (237)
208 TIGR02323 CP_lyasePhnK phospho 98.6 3.3E-08 7.1E-13 80.8 3.1 50 30-84 3-54 (253)
209 PRK09580 sufC cysteine desulfu 98.6 6.4E-08 1.4E-12 78.7 4.6 47 31-82 2-50 (248)
210 cd03215 ABC_Carb_Monos_II This 98.6 3.4E-08 7.4E-13 77.2 2.8 47 30-84 4-51 (182)
211 cd03246 ABCC_Protease_Secretio 98.6 5.1E-08 1.1E-12 75.7 3.8 47 33-84 3-53 (173)
212 cd03216 ABC_Carb_Monos_I This 98.6 3.3E-08 7.1E-13 76.3 2.6 46 33-83 3-50 (163)
213 PRK13634 cbiO cobalt transport 98.6 3.3E-08 7.1E-13 83.1 2.8 49 31-84 3-58 (290)
214 TIGR00968 3a0106s01 sulfate AB 98.6 2.3E-08 4.9E-13 81.3 1.8 46 33-83 3-50 (237)
215 cd03369 ABCC_NFT1 Domain 2 of 98.6 5E-08 1.1E-12 77.5 3.7 51 29-84 5-59 (207)
216 PRK15056 manganese/iron transp 98.6 2.4E-08 5.2E-13 82.9 2.0 49 30-83 6-57 (272)
217 cd03228 ABCC_MRP_Like The MRP 98.6 5.7E-08 1.2E-12 75.3 3.9 46 33-83 3-52 (171)
218 PRK10982 galactose/methyl gala 98.6 1.6E-08 3.4E-13 90.4 0.8 45 35-84 3-49 (491)
219 PRK15177 Vi polysaccharide exp 98.6 2E-08 4.4E-13 80.7 1.3 35 45-84 3-38 (213)
220 PRK09473 oppD oligopeptide tra 98.6 5.2E-08 1.1E-12 83.6 3.8 49 30-83 12-66 (330)
221 PRK14267 phosphate ABC transpo 98.6 4.7E-08 1E-12 79.9 3.3 49 30-83 4-54 (253)
222 cd03217 ABC_FeS_Assembly ABC-t 98.5 9E-08 2E-12 76.0 4.7 45 33-82 3-49 (200)
223 cd03250 ABCC_MRP_domain1 Domai 98.5 4.5E-08 9.8E-13 77.6 2.9 47 33-84 3-56 (204)
224 TIGR02982 heterocyst_DevA ABC 98.5 6.4E-08 1.4E-12 77.6 3.7 47 32-83 3-55 (220)
225 cd03232 ABC_PDR_domain2 The pl 98.5 1.8E-08 4E-13 79.5 0.6 48 30-82 3-56 (192)
226 PRK13645 cbiO cobalt transport 98.5 4.6E-08 1E-12 81.9 2.9 50 29-83 5-61 (289)
227 COG4555 NatA ABC-type Na+ tran 98.5 2.3E-08 4.9E-13 81.4 0.9 59 31-106 2-65 (245)
228 cd03297 ABC_ModC_molybdenum_tr 98.5 2.7E-08 5.8E-13 79.5 1.3 43 35-84 5-48 (214)
229 PRK13637 cbiO cobalt transport 98.5 4.4E-08 9.4E-13 82.2 2.7 49 31-84 3-58 (287)
230 PRK13641 cbiO cobalt transport 98.5 4.9E-08 1.1E-12 81.8 2.9 49 31-84 3-58 (287)
231 PRK13636 cbiO cobalt transport 98.5 5.2E-08 1.1E-12 81.5 3.0 50 30-84 5-57 (283)
232 cd03251 ABCC_MsbA MsbA is an e 98.5 7.3E-08 1.6E-12 77.7 3.8 46 33-83 3-52 (234)
233 PRK10418 nikD nickel transport 98.5 5.1E-08 1.1E-12 80.0 2.9 49 30-83 4-53 (254)
234 PRK11022 dppD dipeptide transp 98.5 6.3E-08 1.4E-12 82.9 3.6 48 30-82 3-56 (326)
235 PRK13649 cbiO cobalt transport 98.5 4.6E-08 1E-12 81.3 2.6 48 31-83 3-57 (280)
236 PRK03695 vitamin B12-transport 98.5 1.4E-07 2.9E-12 77.4 5.3 35 44-83 11-46 (248)
237 cd03229 ABC_Class3 This class 98.5 5.1E-08 1.1E-12 76.0 2.6 46 33-83 3-50 (178)
238 PRK13633 cobalt transporter AT 98.5 5.1E-08 1.1E-12 81.3 2.8 50 30-84 4-61 (280)
239 TIGR00972 3a0107s01c2 phosphat 98.5 6.3E-08 1.4E-12 79.0 3.2 48 31-83 2-51 (247)
240 cd03230 ABC_DR_subfamily_A Thi 98.5 5.6E-08 1.2E-12 75.4 2.8 46 33-83 3-50 (173)
241 PRK13639 cbiO cobalt transport 98.5 5.6E-08 1.2E-12 80.9 2.7 48 31-83 2-52 (275)
242 PRK13651 cobalt transporter AT 98.5 5.8E-08 1.3E-12 82.4 2.8 48 31-83 3-57 (305)
243 cd03223 ABCD_peroxisomal_ALDP 98.5 7.1E-08 1.5E-12 74.7 3.1 47 33-84 3-52 (166)
244 cd03254 ABCC_Glucan_exporter_l 98.5 7.7E-08 1.7E-12 77.3 3.3 48 31-83 3-53 (229)
245 TIGR00174 miaA tRNA isopenteny 98.5 4.4E-08 9.6E-13 83.0 2.0 54 62-115 1-64 (287)
246 PRK13644 cbiO cobalt transport 98.5 6.1E-08 1.3E-12 80.7 2.8 49 31-84 2-53 (274)
247 PRK15093 antimicrobial peptide 98.5 1.1E-07 2.4E-12 81.5 4.4 48 30-82 3-56 (330)
248 cd03213 ABCG_EPDR ABCG transpo 98.5 8.8E-08 1.9E-12 75.8 3.4 48 31-83 4-59 (194)
249 PRK10938 putative molybdenum t 98.5 8.3E-08 1.8E-12 85.6 3.6 50 30-84 3-54 (490)
250 PRK10636 putative ABC transpor 98.5 7.8E-08 1.7E-12 89.0 3.5 49 30-83 1-51 (638)
251 COG1134 TagH ABC-type polysacc 98.5 8.1E-08 1.8E-12 79.5 3.1 82 41-147 39-129 (249)
252 PRK13543 cytochrome c biogenes 98.5 7.1E-08 1.5E-12 77.3 2.6 50 30-84 11-62 (214)
253 PRK10619 histidine/lysine/argi 98.5 7.3E-08 1.6E-12 79.1 2.7 50 29-83 4-55 (257)
254 cd03247 ABCC_cytochrome_bd The 98.5 6.8E-08 1.5E-12 75.2 2.4 47 33-84 3-53 (178)
255 cd03245 ABCC_bacteriocin_expor 98.5 9.9E-08 2.1E-12 76.2 3.4 48 31-83 3-54 (220)
256 PRK14273 phosphate ABC transpo 98.5 8.5E-08 1.8E-12 78.5 2.9 52 27-83 4-57 (254)
257 cd03288 ABCC_SUR2 The SUR doma 98.5 1.1E-07 2.4E-12 78.2 3.6 50 29-83 18-71 (257)
258 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.5 7.2E-08 1.6E-12 73.1 2.3 47 33-84 3-51 (144)
259 COG4136 ABC-type uncharacteriz 98.5 5.1E-08 1.1E-12 76.5 1.4 81 44-138 17-103 (213)
260 PRK09544 znuC high-affinity zi 98.5 6E-08 1.3E-12 79.9 1.9 49 30-83 4-54 (251)
261 PRK13631 cbiO cobalt transport 98.5 8.1E-08 1.7E-12 82.1 2.7 50 30-84 21-77 (320)
262 PLN03130 ABC transporter C fam 98.5 1.4E-07 3.1E-12 95.1 4.8 96 31-154 615-722 (1622)
263 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.5 9E-08 2E-12 77.4 2.7 46 33-83 3-53 (238)
264 cd03233 ABC_PDR_domain1 The pl 98.5 8.1E-08 1.8E-12 76.5 2.4 48 31-83 4-57 (202)
265 cd03253 ABCC_ATM1_transporter 98.5 1.3E-07 2.9E-12 76.3 3.7 47 33-84 3-52 (236)
266 TIGR00954 3a01203 Peroxysomal 98.5 2.5E-07 5.5E-12 85.9 6.0 50 29-83 450-502 (659)
267 PRK11819 putative ABC transpor 98.5 9.4E-08 2E-12 86.9 3.0 49 30-83 6-57 (556)
268 PF00005 ABC_tran: ABC transpo 98.5 8.7E-09 1.9E-13 76.1 -3.1 33 47-84 3-36 (137)
269 PRK14241 phosphate transporter 98.5 9.9E-08 2.1E-12 78.4 2.8 48 30-82 4-53 (258)
270 PRK14269 phosphate ABC transpo 98.4 1.5E-07 3.2E-12 76.8 3.8 46 32-82 4-51 (246)
271 cd03237 ABC_RNaseL_inhibitor_d 98.4 9.5E-08 2.1E-12 78.7 2.5 43 42-84 7-50 (246)
272 PRK15064 ABC transporter ATP-b 98.4 1.2E-07 2.5E-12 85.6 3.3 48 31-83 2-51 (530)
273 cd03267 ABC_NatA_like Similar 98.4 7.8E-08 1.7E-12 78.2 1.9 37 42-83 34-71 (236)
274 TIGR01166 cbiO cobalt transpor 98.4 8.6E-08 1.9E-12 75.2 2.1 37 43-84 6-43 (190)
275 PRK10261 glutathione transport 98.4 1.4E-07 2.9E-12 87.1 3.6 50 29-83 312-374 (623)
276 COG4148 ModC ABC-type molybdat 98.4 9.9E-08 2.1E-12 81.0 2.5 82 61-154 25-121 (352)
277 PLN03232 ABC transporter C fam 98.4 2.4E-07 5.2E-12 92.9 5.6 97 30-154 614-722 (1495)
278 PRK14240 phosphate transporter 98.4 1.4E-07 3E-12 77.0 3.0 48 30-82 3-52 (250)
279 PRK15134 microcin C ABC transp 98.4 2.2E-07 4.8E-12 83.8 4.3 49 30-83 5-59 (529)
280 COG4618 ArpD ABC-type protease 98.4 3E-07 6.5E-12 83.0 5.0 86 30-133 334-429 (580)
281 PRK14246 phosphate ABC transpo 98.4 1.4E-07 3E-12 77.9 2.7 50 30-84 10-61 (257)
282 COG4161 ArtP ABC-type arginine 98.4 3.1E-07 6.7E-12 73.0 4.4 83 35-134 7-103 (242)
283 PRK10744 pstB phosphate transp 98.4 1.5E-07 3.2E-12 77.5 2.8 51 27-82 10-62 (260)
284 PRK14272 phosphate ABC transpo 98.4 1.9E-07 4E-12 76.2 3.3 48 30-82 4-53 (252)
285 PRK14262 phosphate ABC transpo 98.4 1.5E-07 3.2E-12 76.8 2.7 48 30-82 3-52 (250)
286 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 1.7E-07 3.6E-12 85.1 3.3 49 30-83 4-55 (552)
287 PRK14235 phosphate transporter 98.4 1E-07 2.3E-12 78.9 1.7 49 29-82 18-68 (267)
288 PRK14270 phosphate ABC transpo 98.4 1.8E-07 3.9E-12 76.5 3.0 48 30-82 4-53 (251)
289 cd03234 ABCG_White The White s 98.4 1.7E-07 3.7E-12 75.5 2.8 47 31-82 4-56 (226)
290 PRK11147 ABC transporter ATPas 98.4 1.6E-07 3.5E-12 86.8 3.0 49 30-83 3-53 (635)
291 PRK14248 phosphate ABC transpo 98.4 1.6E-07 3.5E-12 77.6 2.6 48 30-82 21-70 (268)
292 cd03222 ABC_RNaseL_inhibitor T 98.4 1.6E-07 3.5E-12 74.1 2.4 44 35-84 5-50 (177)
293 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.4 7.7E-08 1.7E-12 77.8 0.5 48 32-84 24-73 (224)
294 PRK14259 phosphate ABC transpo 98.4 1.8E-07 4E-12 77.6 2.7 49 29-82 12-62 (269)
295 PRK14268 phosphate ABC transpo 98.4 1.8E-07 3.9E-12 76.9 2.6 48 30-82 12-61 (258)
296 PRK14239 phosphate transporter 98.4 2E-07 4.3E-12 76.0 2.8 48 30-82 5-54 (252)
297 PRK14242 phosphate transporter 98.4 1.6E-07 3.5E-12 76.7 2.1 48 30-82 6-55 (253)
298 PRK15134 microcin C ABC transp 98.4 2.7E-07 5.7E-12 83.3 3.7 48 30-82 275-335 (529)
299 COG3845 ABC-type uncharacteriz 98.4 5.2E-07 1.1E-11 80.9 5.4 87 30-133 4-99 (501)
300 cd03291 ABCC_CFTR1 The CFTR su 98.4 2.2E-07 4.9E-12 78.1 2.9 48 30-83 39-87 (282)
301 TIGR01257 rim_protein retinal- 98.4 1.9E-07 4.1E-12 95.9 2.8 109 28-154 1935-2063(2272)
302 PRK14237 phosphate transporter 98.4 2E-07 4.3E-12 77.2 2.4 49 29-82 19-69 (267)
303 COG1123 ATPase components of v 98.4 2.9E-07 6.4E-12 83.7 3.6 50 30-84 280-342 (539)
304 cd03290 ABCC_SUR1_N The SUR do 98.4 1.8E-07 3.8E-12 74.9 1.9 37 42-83 14-51 (218)
305 PRK14256 phosphate ABC transpo 98.3 2.3E-07 5.1E-12 75.8 2.6 48 30-82 4-53 (252)
306 PRK14261 phosphate ABC transpo 98.3 1.9E-07 4.1E-12 76.4 2.1 48 30-82 6-55 (253)
307 PRK10261 glutathione transport 98.3 2E-07 4.4E-12 85.9 2.4 49 30-83 12-66 (623)
308 PRK15064 ABC transporter ATP-b 98.3 2.7E-07 5.8E-12 83.3 3.1 49 30-83 319-369 (530)
309 PRK14249 phosphate ABC transpo 98.3 3E-07 6.4E-12 75.2 3.0 49 30-83 4-54 (251)
310 PRK14238 phosphate transporter 98.3 1.9E-07 4E-12 77.6 1.8 60 18-82 10-73 (271)
311 COG5265 ATM1 ABC-type transpor 98.3 5E-07 1.1E-11 80.2 4.4 101 28-145 260-369 (497)
312 PRK14252 phosphate ABC transpo 98.3 3E-07 6.4E-12 75.9 2.8 49 29-82 15-65 (265)
313 COG1119 ModF ABC-type molybden 98.3 2.7E-07 5.8E-12 76.7 2.4 51 28-83 29-82 (257)
314 PRK09700 D-allose transporter 98.3 3E-07 6.6E-12 82.5 2.9 48 30-83 265-313 (510)
315 PRK14255 phosphate ABC transpo 98.3 3.3E-07 7.1E-12 74.9 2.9 48 30-82 5-54 (252)
316 PRK14253 phosphate ABC transpo 98.3 3E-07 6.5E-12 75.0 2.6 47 31-82 4-52 (249)
317 TIGR03269 met_CoM_red_A2 methy 98.3 2.9E-07 6.3E-12 82.8 2.8 45 33-82 3-49 (520)
318 TIGR03269 met_CoM_red_A2 methy 98.3 2.4E-07 5.2E-12 83.3 2.2 49 30-83 279-334 (520)
319 PRK14243 phosphate transporter 98.3 3.1E-07 6.7E-12 75.9 2.6 48 30-82 10-59 (264)
320 PRK14275 phosphate ABC transpo 98.3 1.6E-07 3.4E-12 78.8 0.8 63 15-82 16-88 (286)
321 PRK14274 phosphate ABC transpo 98.3 2.4E-07 5.3E-12 76.1 1.9 48 30-82 12-61 (259)
322 PRK14251 phosphate ABC transpo 98.3 3.3E-07 7.1E-12 74.8 2.6 48 30-82 4-53 (251)
323 PRK10636 putative ABC transpor 98.3 4.3E-07 9.3E-12 84.1 3.6 49 30-83 312-362 (638)
324 TIGR02633 xylG D-xylose ABC tr 98.3 3.7E-07 8.1E-12 81.7 3.0 48 31-83 2-51 (500)
325 cd03238 ABC_UvrA The excision 98.3 2.6E-07 5.7E-12 72.9 1.8 33 42-79 8-41 (176)
326 PRK11819 putative ABC transpor 98.3 3.9E-07 8.5E-12 82.9 3.1 49 30-83 324-374 (556)
327 TIGR02770 nickel_nikD nickel i 98.3 3.7E-07 8E-12 73.8 2.7 34 45-83 2-36 (230)
328 TIGR01257 rim_protein retinal- 98.3 6.3E-07 1.4E-11 92.2 4.8 107 30-154 928-1054(2272)
329 TIGR02633 xylG D-xylose ABC tr 98.3 4E-07 8.7E-12 81.5 3.0 48 30-82 257-309 (500)
330 PRK14245 phosphate ABC transpo 98.3 3.3E-07 7.2E-12 74.9 2.3 47 30-81 3-51 (250)
331 PRK14271 phosphate ABC transpo 98.3 3.9E-07 8.4E-12 76.0 2.8 48 30-82 21-70 (276)
332 cd03236 ABC_RNaseL_inhibitor_d 98.3 4.7E-07 1E-11 75.0 3.1 44 35-84 5-51 (255)
333 PRK14264 phosphate ABC transpo 98.3 2.9E-07 6.4E-12 77.9 1.8 59 19-82 31-94 (305)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 98.3 4.8E-07 1E-11 82.2 3.2 49 30-83 322-372 (552)
335 PRK14236 phosphate transporter 98.3 3.9E-07 8.6E-12 75.6 2.3 50 28-82 23-74 (272)
336 PRK14258 phosphate ABC transpo 98.3 5.2E-07 1.1E-11 74.4 2.9 49 30-83 7-57 (261)
337 PRK14265 phosphate ABC transpo 98.3 4.4E-07 9.5E-12 75.6 2.5 48 30-82 20-69 (274)
338 PRK13549 xylose transporter AT 98.3 5.1E-07 1.1E-11 81.1 3.0 48 30-82 259-311 (506)
339 PRK11147 ABC transporter ATPas 98.3 5.4E-07 1.2E-11 83.3 3.2 49 30-83 319-369 (635)
340 COG4598 HisP ABC-type histidin 98.2 1E-06 2.2E-11 71.1 3.9 49 31-84 7-57 (256)
341 TIGR00956 3a01205 Pleiotropic 98.2 6.1E-07 1.3E-11 89.5 3.1 105 31-153 760-889 (1394)
342 PRK10982 galactose/methyl gala 98.2 5.9E-07 1.3E-11 80.3 2.8 48 30-83 250-298 (491)
343 PRK13546 teichoic acids export 98.2 4.3E-07 9.4E-12 75.6 1.6 37 42-83 37-74 (264)
344 PRK14260 phosphate ABC transpo 98.2 6.1E-07 1.3E-11 73.8 2.5 48 30-82 7-56 (259)
345 PRK14254 phosphate ABC transpo 98.2 6.2E-07 1.3E-11 75.2 2.4 48 30-82 39-88 (285)
346 PRK10938 putative molybdenum t 98.2 7.5E-07 1.6E-11 79.5 3.0 48 30-82 260-309 (490)
347 PRK14244 phosphate ABC transpo 98.2 6E-07 1.3E-11 73.4 2.2 45 33-82 8-54 (251)
348 PRK13545 tagH teichoic acids e 98.2 5E-07 1.1E-11 82.4 1.6 54 25-83 16-74 (549)
349 PLN03073 ABC transporter F fam 98.2 8.5E-07 1.8E-11 83.4 3.0 49 30-83 508-559 (718)
350 COG4615 PvdE ABC-type sideroph 98.2 1.8E-06 3.9E-11 76.5 4.6 73 31-120 323-400 (546)
351 COG4778 PhnL ABC-type phosphon 98.2 1E-06 2.2E-11 70.5 2.8 36 42-82 24-61 (235)
352 COG0444 DppD ABC-type dipeptid 98.2 1.6E-06 3.4E-11 74.3 3.9 37 42-83 18-56 (316)
353 TIGR00955 3a01204 The Eye Pigm 98.2 2E-06 4.3E-11 79.4 4.9 92 42-153 38-152 (617)
354 PLN03211 ABC transporter G-25; 98.2 2.5E-07 5.5E-12 86.1 -1.1 36 42-82 81-117 (659)
355 cd03270 ABC_UvrA_I The excisio 98.2 1.1E-06 2.4E-11 71.3 2.5 32 41-77 7-38 (226)
356 PRK14266 phosphate ABC transpo 98.1 9.5E-07 2.1E-11 72.0 2.1 47 31-82 4-52 (250)
357 PRK10762 D-ribose transporter 98.1 1.5E-06 3.2E-11 78.0 3.0 36 43-83 266-302 (501)
358 PLN03073 ABC transporter F fam 98.1 1.1E-06 2.5E-11 82.5 2.2 49 28-81 175-225 (718)
359 PRK14263 phosphate ABC transpo 98.1 1.5E-06 3.3E-11 71.8 2.7 45 33-82 11-57 (261)
360 PRK15439 autoinducer 2 ABC tra 98.1 1.7E-06 3.7E-11 77.9 3.2 44 30-82 268-312 (510)
361 PRK11288 araG L-arabinose tran 98.1 1.8E-06 3.9E-11 77.5 3.3 36 43-83 267-303 (501)
362 cd00267 ABC_ATPase ABC (ATP-bi 98.1 1.5E-06 3.2E-11 66.1 2.3 36 43-83 13-49 (157)
363 PLN02840 tRNA dimethylallyltra 98.1 5.4E-07 1.2E-11 80.0 -0.1 53 59-111 20-82 (421)
364 cd00820 PEPCK_HprK Phosphoenol 98.1 8.8E-07 1.9E-11 64.9 1.0 31 44-79 4-35 (107)
365 PLN03140 ABC transporter G fam 98.1 3.9E-06 8.4E-11 84.3 5.8 107 30-154 867-1007(1470)
366 COG1123 ATPase components of v 98.1 2.8E-06 6.1E-11 77.4 4.4 50 30-84 5-61 (539)
367 PRK10535 macrolide transporter 98.1 3.1E-06 6.8E-11 78.5 4.6 50 30-84 4-59 (648)
368 TIGR03238 dnd_assoc_3 dnd syst 98.1 2.8E-06 6.1E-11 76.6 4.1 31 42-77 19-49 (504)
369 TIGR03771 anch_rpt_ABC anchore 98.1 2.1E-06 4.5E-11 69.3 2.8 25 60-84 6-31 (223)
370 TIGR00957 MRP_assoc_pro multi 98.1 3.9E-06 8.4E-11 84.5 5.2 94 30-151 636-739 (1522)
371 PRK14257 phosphate ABC transpo 98.1 2.1E-06 4.5E-11 73.8 2.3 49 29-82 79-131 (329)
372 PRK13409 putative ATPase RIL; 98.0 2.2E-06 4.7E-11 79.0 2.4 49 30-83 340-389 (590)
373 PRK13409 putative ATPase RIL; 98.0 3.6E-06 7.8E-11 77.5 3.9 35 44-84 89-124 (590)
374 COG1137 YhbG ABC-type (unclass 98.0 1.4E-06 3.1E-11 71.0 0.9 48 31-83 5-54 (243)
375 COG4586 ABC-type uncharacteriz 98.0 8E-06 1.7E-10 69.2 4.6 103 41-161 36-156 (325)
376 COG4167 SapF ABC-type antimicr 98.0 2.5E-06 5.3E-11 69.1 1.4 47 42-105 26-75 (267)
377 COG0488 Uup ATPase components 98.0 6E-06 1.3E-10 75.3 4.0 50 30-84 3-54 (530)
378 PF03193 DUF258: Protein of un 98.0 2.8E-06 6.1E-11 66.5 1.3 98 60-159 35-156 (161)
379 TIGR01187 potA spermidine/putr 98.0 1.5E-06 3.2E-11 74.4 -0.4 77 65-153 1-92 (325)
380 KOG0054|consensus 97.9 7.9E-06 1.7E-10 81.1 4.5 107 29-152 1137-1255(1381)
381 COG4107 PhnK ABC-type phosphon 97.9 2.8E-05 6.1E-10 62.6 5.7 46 31-81 7-54 (258)
382 COG0488 Uup ATPase components 97.9 7.3E-06 1.6E-10 74.8 2.7 47 30-81 321-370 (530)
383 PLN03140 ABC transporter G fam 97.9 2.7E-06 5.8E-11 85.4 -0.1 37 41-82 177-214 (1470)
384 COG1162 Predicted GTPases [Gen 97.8 6.8E-06 1.5E-10 70.1 1.7 84 59-148 163-274 (301)
385 PRK14729 miaA tRNA delta(2)-is 97.8 2.4E-06 5.3E-11 72.9 -1.1 48 60-111 4-64 (300)
386 KOG0054|consensus 97.8 1.8E-05 3.8E-10 78.8 4.3 83 44-154 536-625 (1381)
387 TIGR01271 CFTR_protein cystic 97.8 1.2E-05 2.6E-10 80.9 3.0 37 43-84 440-477 (1490)
388 KOG0061|consensus 97.8 1.6E-05 3.4E-10 73.7 2.9 74 42-133 43-124 (613)
389 COG4178 ABC-type uncharacteriz 97.7 5.8E-05 1.3E-09 69.7 6.1 103 30-155 392-503 (604)
390 COG4138 BtuD ABC-type cobalami 97.7 2.7E-05 5.8E-10 62.7 3.1 46 44-107 14-62 (248)
391 COG4172 ABC-type uncharacteriz 97.7 6.9E-05 1.5E-09 66.7 5.9 103 42-163 300-427 (534)
392 PLN02748 tRNA dimethylallyltra 97.7 2.3E-05 5.1E-10 70.5 2.5 53 59-111 21-83 (468)
393 KOG0059|consensus 97.7 3.8E-05 8.3E-10 73.8 4.1 112 30-158 564-695 (885)
394 cd00227 CPT Chloramphenicol (C 97.6 3.3E-05 7.1E-10 60.0 2.7 24 60-83 2-27 (175)
395 COG1101 PhnK ABC-type uncharac 97.6 6.1E-05 1.3E-09 62.2 3.5 56 42-114 19-77 (263)
396 TIGR00956 3a01205 Pleiotropic 97.5 3.5E-05 7.5E-10 77.2 1.8 36 42-82 74-110 (1394)
397 PLN02165 adenylate isopentenyl 97.5 3.3E-05 7.1E-10 66.9 1.4 50 59-108 42-101 (334)
398 PF13207 AAA_17: AAA domain; P 97.5 4.8E-05 1E-09 54.8 1.3 20 62-81 1-21 (121)
399 PRK08118 topology modulation p 97.5 3.8E-05 8.2E-10 59.8 0.8 20 62-81 3-23 (167)
400 PTZ00243 ABC transporter; Prov 97.4 5.7E-05 1.2E-09 76.4 1.3 35 44-83 675-710 (1560)
401 TIGR00235 udk uridine kinase. 97.4 7E-05 1.5E-09 59.7 1.5 22 60-81 6-28 (207)
402 KOG0927|consensus 97.4 0.00019 4E-09 65.6 4.4 27 58-84 414-441 (614)
403 KOG0060|consensus 97.4 0.00019 4E-09 66.1 4.4 34 45-83 451-485 (659)
404 COG0324 MiaA tRNA delta(2)-iso 97.4 4.1E-05 8.8E-10 65.6 0.1 49 60-111 3-64 (308)
405 TIGR00157 ribosome small subun 97.4 0.0001 2.3E-09 60.7 2.5 96 60-161 120-242 (245)
406 PF13555 AAA_29: P-loop contai 97.4 0.00011 2.3E-09 48.9 2.0 17 61-77 24-40 (62)
407 KOG0066|consensus 97.3 0.00017 3.6E-09 65.2 3.3 33 58-102 611-644 (807)
408 cd03271 ABC_UvrA_II The excisi 97.3 0.00014 3E-09 60.9 2.3 28 45-77 11-38 (261)
409 cd03283 ABC_MutS-like MutS-lik 97.3 0.00013 2.8E-09 58.4 1.6 22 60-81 25-47 (199)
410 cd03278 ABC_SMC_barmotin Barmo 97.2 0.00012 2.7E-09 58.3 1.4 22 59-81 22-44 (197)
411 smart00382 AAA ATPases associa 97.2 0.00019 4.1E-09 50.6 2.2 25 60-84 2-28 (148)
412 PF01926 MMR_HSR1: 50S ribosom 97.2 7.5E-05 1.6E-09 53.6 0.1 49 63-112 2-54 (116)
413 PRK09825 idnK D-gluconate kina 97.2 0.00014 3E-09 57.1 1.6 23 60-82 3-26 (176)
414 KOG0064|consensus 97.2 0.00041 8.8E-09 63.6 4.7 39 45-88 498-537 (728)
415 PRK05480 uridine/cytidine kina 97.2 0.00014 3.1E-09 57.7 1.6 21 60-80 6-27 (209)
416 COG1245 Predicted ATPase, RNas 97.2 0.00021 4.5E-09 64.5 2.6 50 35-84 342-392 (591)
417 PF13671 AAA_33: AAA domain; P 97.2 0.00016 3.4E-09 53.4 1.4 21 62-82 1-23 (143)
418 cd03279 ABC_sbcCD SbcCD and ot 97.2 0.0002 4.3E-09 57.4 2.0 21 60-80 28-49 (213)
419 COG4172 ABC-type uncharacteriz 97.2 0.00031 6.7E-09 62.7 3.4 75 30-117 6-89 (534)
420 PRK08233 hypothetical protein; 97.2 0.0002 4.4E-09 54.9 1.9 23 61-83 4-28 (182)
421 PRK06762 hypothetical protein; 97.1 0.00021 4.5E-09 54.6 1.7 24 59-82 1-26 (166)
422 cd03272 ABC_SMC3_euk Eukaryoti 97.1 0.00019 4.2E-09 58.0 1.5 21 60-80 23-44 (243)
423 PRK06761 hypothetical protein; 97.1 0.00075 1.6E-08 57.2 5.1 59 60-121 3-65 (282)
424 cd01130 VirB11-like_ATPase Typ 97.1 0.00023 4.9E-09 55.9 1.8 24 60-83 25-50 (186)
425 PRK00698 tmk thymidylate kinas 97.1 0.00025 5.4E-09 55.5 1.7 37 60-98 3-41 (205)
426 PF04665 Pox_A32: Poxvirus A32 97.1 0.00034 7.3E-09 58.1 2.4 33 62-94 15-49 (241)
427 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00029 6.3E-09 54.3 1.7 20 61-80 4-24 (188)
428 cd03273 ABC_SMC2_euk Eukaryoti 97.0 0.0003 6.5E-09 57.6 1.9 18 60-77 25-42 (251)
429 cd02023 UMPK Uridine monophosp 97.0 0.00022 4.8E-09 56.1 0.9 16 62-77 1-16 (198)
430 PRK07261 topology modulation p 97.0 0.00027 5.9E-09 55.0 1.2 19 62-80 2-21 (171)
431 cd03243 ABC_MutS_homologs The 97.0 0.00028 6.1E-09 56.0 1.3 21 60-80 29-50 (202)
432 cd01672 TMPK Thymidine monopho 97.0 0.00039 8.3E-09 53.6 1.8 36 62-99 2-39 (200)
433 KOG3354|consensus 97.0 0.0006 1.3E-08 53.7 2.9 41 62-119 14-56 (191)
434 cd03274 ABC_SMC4_euk Eukaryoti 97.0 0.00035 7.6E-09 56.3 1.6 19 62-80 27-46 (212)
435 PRK12288 GTPase RsgA; Reviewed 97.0 0.00033 7.2E-09 60.8 1.6 22 60-81 205-228 (347)
436 PF00485 PRK: Phosphoribulokin 97.0 0.00031 6.8E-09 55.4 1.2 22 62-83 1-24 (194)
437 COG0563 Adk Adenylate kinase a 96.9 0.00034 7.3E-09 55.3 1.3 20 62-81 2-23 (178)
438 PRK05541 adenylylsulfate kinas 96.9 0.00041 8.8E-09 53.6 1.7 25 59-83 6-32 (176)
439 KOG0065|consensus 96.9 0.00035 7.5E-09 69.3 1.6 35 42-81 804-839 (1391)
440 COG0572 Udk Uridine kinase [Nu 96.9 0.00073 1.6E-08 55.3 3.2 25 60-84 8-34 (218)
441 PRK10751 molybdopterin-guanine 96.9 0.00036 7.9E-09 55.1 1.4 24 60-83 6-31 (173)
442 cd02025 PanK Pantothenate kina 96.9 0.00029 6.4E-09 57.2 0.7 16 62-77 1-16 (220)
443 PRK09270 nucleoside triphospha 96.9 0.00042 9.2E-09 56.1 1.7 24 60-83 33-58 (229)
444 PTZ00301 uridine kinase; Provi 96.9 0.00036 7.8E-09 56.6 1.2 21 61-81 4-26 (210)
445 PRK12289 GTPase RsgA; Reviewed 96.9 0.00049 1.1E-08 60.0 2.1 38 60-98 172-218 (352)
446 cd01854 YjeQ_engC YjeQ/EngC. 96.9 0.00089 1.9E-08 56.4 3.5 99 60-159 161-282 (287)
447 cd04164 trmE TrmE (MnmE, ThdF, 96.9 0.00047 1E-08 50.6 1.6 16 62-77 3-18 (157)
448 PLN02796 D-glycerate 3-kinase 96.9 0.00053 1.2E-08 59.7 1.9 29 53-81 93-122 (347)
449 PRK14722 flhF flagellar biosyn 96.9 0.00079 1.7E-08 59.2 3.0 23 59-81 136-160 (374)
450 PRK01889 GTPase RsgA; Reviewed 96.9 0.0006 1.3E-08 59.3 2.2 22 60-81 195-217 (356)
451 cd01131 PilT Pilus retraction 96.9 0.00047 1E-08 54.8 1.4 22 62-83 3-26 (198)
452 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.00048 1E-08 54.6 1.4 29 48-80 20-49 (200)
453 cd01895 EngA2 EngA2 subfamily. 96.8 0.00027 5.8E-09 52.5 -0.0 52 62-114 4-59 (174)
454 PF13238 AAA_18: AAA domain; P 96.8 0.00051 1.1E-08 49.2 1.5 19 63-81 1-21 (129)
455 TIGR00554 panK_bact pantothena 96.8 0.0005 1.1E-08 58.4 1.5 21 60-80 62-83 (290)
456 TIGR01313 therm_gnt_kin carboh 96.8 0.00038 8.3E-09 52.9 0.7 19 63-81 1-20 (163)
457 PRK14527 adenylate kinase; Pro 96.8 0.00059 1.3E-08 53.6 1.8 22 59-80 5-27 (191)
458 PF00448 SRP54: SRP54-type pro 96.8 0.00048 1E-08 55.1 1.2 24 60-83 1-26 (196)
459 cd04159 Arl10_like Arl10-like 96.8 0.00063 1.4E-08 49.6 1.6 15 63-77 2-16 (159)
460 PRK14530 adenylate kinase; Pro 96.8 0.00061 1.3E-08 54.6 1.6 23 60-82 3-26 (215)
461 PF08477 Miro: Miro-like prote 96.8 0.00057 1.2E-08 48.7 1.3 20 63-82 2-23 (119)
462 PRK03846 adenylylsulfate kinas 96.8 0.0007 1.5E-08 53.6 1.7 22 60-81 24-46 (198)
463 PRK00131 aroK shikimate kinase 96.8 0.00071 1.5E-08 51.2 1.7 22 60-81 4-26 (175)
464 PRK06696 uridine kinase; Valid 96.7 0.00066 1.4E-08 54.8 1.4 24 60-83 22-47 (223)
465 cd02019 NK Nucleoside/nucleoti 96.7 0.00059 1.3E-08 45.5 0.9 19 63-81 2-21 (69)
466 KOG1384|consensus 96.7 0.00054 1.2E-08 59.2 0.9 51 60-110 7-67 (348)
467 PRK13975 thymidylate kinase; P 96.7 0.00077 1.7E-08 52.6 1.6 22 60-81 2-24 (196)
468 COG2401 ABC-type ATPase fused 96.7 0.00061 1.3E-08 61.1 1.1 34 43-81 397-431 (593)
469 cd01855 YqeH YqeH. YqeH is an 96.7 0.00046 1E-08 53.9 0.3 43 60-102 127-178 (190)
470 PRK00889 adenylylsulfate kinas 96.7 0.00087 1.9E-08 51.7 1.7 24 59-82 3-28 (175)
471 cd01881 Obg_like The Obg-like 96.7 0.00066 1.4E-08 51.0 0.9 49 65-115 1-54 (176)
472 TIGR00436 era GTP-binding prot 96.7 0.00095 2.1E-08 55.4 1.9 38 62-100 2-41 (270)
473 cd01858 NGP_1 NGP-1. Autoanti 96.6 0.00093 2E-08 50.7 1.7 21 61-81 103-125 (157)
474 PRK06547 hypothetical protein; 96.6 0.00095 2.1E-08 52.4 1.7 18 60-77 15-32 (172)
475 PF09439 SRPRB: Signal recogni 96.6 0.00089 1.9E-08 53.3 1.5 23 59-81 2-26 (181)
476 cd01898 Obg Obg subfamily. Th 96.6 0.001 2.2E-08 49.9 1.7 50 63-114 3-57 (170)
477 cd04155 Arl3 Arl3 subfamily. 96.6 0.00093 2E-08 50.5 1.4 16 62-77 16-31 (173)
478 PRK15494 era GTPase Era; Provi 96.6 0.0016 3.5E-08 56.1 3.0 69 44-113 34-108 (339)
479 cd01852 AIG1 AIG1 (avrRpt2-ind 96.6 0.0009 1.9E-08 52.6 1.3 20 62-81 2-23 (196)
480 TIGR03499 FlhF flagellar biosy 96.6 0.00097 2.1E-08 56.1 1.6 24 59-82 193-218 (282)
481 PRK06217 hypothetical protein; 96.6 0.00089 1.9E-08 52.3 1.2 19 62-80 3-22 (183)
482 PRK05057 aroK shikimate kinase 96.6 0.0011 2.3E-08 51.8 1.6 21 61-81 5-26 (172)
483 cd00009 AAA The AAA+ (ATPases 96.6 0.0014 3.1E-08 46.7 2.1 22 60-81 19-42 (151)
484 PF00004 AAA: ATPase family as 96.6 0.0009 1.9E-08 48.1 1.0 20 63-82 1-21 (132)
485 cd03275 ABC_SMC1_euk Eukaryoti 96.6 0.0011 2.4E-08 54.3 1.7 17 61-77 23-39 (247)
486 cd02021 GntK Gluconate kinase 96.5 0.00087 1.9E-08 50.2 0.9 21 62-82 1-22 (150)
487 cd01918 HprK_C HprK/P, the bif 96.5 0.0013 2.7E-08 50.9 1.8 22 60-81 14-37 (149)
488 cd03240 ABC_Rad50 The catalyti 96.5 0.0011 2.4E-08 53.0 1.6 18 62-79 24-42 (204)
489 PHA02530 pseT polynucleotide k 96.5 0.0013 2.7E-08 54.9 1.8 23 60-82 2-26 (300)
490 PRK06995 flhF flagellar biosyn 96.5 0.0012 2.7E-08 59.8 1.8 24 59-82 255-280 (484)
491 TIGR02858 spore_III_AA stage I 96.5 0.0024 5.3E-08 53.7 3.4 23 61-83 112-135 (270)
492 PRK00089 era GTPase Era; Revie 96.5 0.0013 2.7E-08 54.9 1.6 36 61-97 6-43 (292)
493 TIGR00017 cmk cytidylate kinas 96.5 0.0014 2.9E-08 53.3 1.7 21 61-81 3-24 (217)
494 PF10662 PduV-EutP: Ethanolami 96.5 0.0015 3.2E-08 50.3 1.9 21 62-82 3-24 (143)
495 PF13476 AAA_23: AAA domain; P 96.5 0.0015 3.3E-08 50.1 1.9 17 61-77 20-36 (202)
496 PF03205 MobB: Molybdopterin g 96.5 0.0012 2.5E-08 50.2 1.1 22 62-83 2-25 (140)
497 PRK03839 putative kinase; Prov 96.5 0.0013 2.8E-08 51.0 1.4 20 62-81 2-22 (180)
498 PRK07196 fliI flagellum-specif 96.4 0.0015 3.2E-08 58.5 1.8 36 41-82 142-178 (434)
499 cd01136 ATPase_flagellum-secre 96.4 0.0024 5.2E-08 55.2 3.0 37 41-83 56-93 (326)
500 PRK14721 flhF flagellar biosyn 96.4 0.0015 3.2E-08 58.3 1.8 23 58-80 189-212 (420)
No 1
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.96 E-value=2.2e-29 Score=199.68 Aligned_cols=104 Identities=38% Similarity=0.524 Sum_probs=96.9
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 136 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG 136 (166)
+|.+++|.||||+|||||+ |++.. .+...||+|||+||+||++|++|+|+|.++|+.++.++.|+||.++.||+||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 5779999999999999999 77776 6999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088 137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFP 164 (166)
Q Consensus 137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p 164 (166)
|+...+++++. +++++=++...+|..+|
T Consensus 81 T~~~~ve~~~~~G~~vildId~qGa~qvk~~~p 113 (191)
T COG0194 81 TSREPVEQALAEGKDVILDIDVQGALQVKKKMP 113 (191)
T ss_pred CcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCC
Confidence 99999999987 57778888888888776
No 2
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.95 E-value=5.3e-29 Score=197.70 Aligned_cols=105 Identities=36% Similarity=0.543 Sum_probs=98.2
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 136 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG 136 (166)
.+++|+|+||||||||||+ |+..+|+ +...++||||+|++||++|++|+|+|.++|+.+++++.|+||+++.||+||
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~-~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCc-cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 3569999999999999999 8888886 678899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088 137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFP 164 (166)
Q Consensus 137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p 164 (166)
+++++|+++++ +++++.++++.|+..||
T Consensus 82 t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~ 114 (186)
T PRK14737 82 TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFP 114 (186)
T ss_pred CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCC
Confidence 99999999988 57889999999998877
No 3
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.95 E-value=1.1e-28 Score=193.80 Aligned_cols=105 Identities=39% Similarity=0.558 Sum_probs=94.9
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 136 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG 136 (166)
++|+++|+|||||||+||+ |+..+|++|+.+++||||+|++||++|++|+|++.++|+++++++.|+||+++.|++||
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 3679999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHh-----hccCChhHHhhCCccC
Q psy18088 137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVF 163 (166)
Q Consensus 137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~ 163 (166)
++.++|+.+++ ++++++++++.|+...
T Consensus 81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~ 112 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAG 112 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCT
T ss_pred hccchhhHhhhcCCcEEEEccHHHHHHHHhcc
Confidence 99999999988 6788999999987653
No 4
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.93 E-value=1.9e-26 Score=181.43 Aligned_cols=106 Identities=37% Similarity=0.557 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCC
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~ 137 (166)
+++++|+|||||||+||. |+..+|+.|..+++||||+|++||.+|++|+|++.++|+.++++|.|+||+++.||+||+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 579999999999999999 888888889999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088 138 SQCGRQNGRN-----YLIFNTLAAKCLPTVFPF 165 (166)
Q Consensus 138 ~~~~I~~ile-----~v~L~~~~~~~l~~~~p~ 165 (166)
+.++|+++++ ++++++++++.|+..+|.
T Consensus 82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~ 114 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLY 114 (184)
T ss_pred CHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCC
Confidence 9999999987 678889999999876654
No 5
>KOG0609|consensus
Probab=99.92 E-value=8.4e-26 Score=200.53 Aligned_cols=142 Identities=35% Similarity=0.513 Sum_probs=124.8
Q ss_pred hhhhhhhhHH-----HHHH-hcCceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--ccccccc
Q psy18088 13 CCQMTVTKQS-----YIRE-NAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLD 84 (166)
Q Consensus 13 ~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~ 84 (166)
+|+----|.+ |+.+ ++.++..+.++||+|+.+.. ..+|+++|+||+|+|...|. |+..+|+
T Consensus 298 ~c~~l~kkkk~~~~~y~~~~~~~~d~~~~~tYEEV~~~~~-----------~~rrtlVLiGa~GvGr~elk~~Li~~~p~ 366 (542)
T KOG0609|consen 298 RCQRLSKKKKKKKSKYLGKHSAVFDQPELLTYEEVVRYPP-----------FRRRTLVLIGAQGVGRRELKNKLIELNPD 366 (542)
T ss_pred hhcccchhhhhhhhhhhhhcchhhhccccccHHHHhhhcc-----------cccceEEEECCcccchHHHHHHHHhhCcc
Confidence 5655444444 4443 67799999999999988842 24679999999999999999 9999999
Q ss_pred ceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhC
Q psy18088 85 RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCL 159 (166)
Q Consensus 85 ~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l 159 (166)
+|+.+||||||+|+++|.+|++|+|||+++|+++++++.|+||++|.+|+|||+.++|+.+++ +++++|++++.|
T Consensus 367 ~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~l 446 (542)
T KOG0609|consen 367 RFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVL 446 (542)
T ss_pred ccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999998 689999999999
Q ss_pred Cc--cCCC
Q psy18088 160 PT--VFPF 165 (166)
Q Consensus 160 ~~--~~p~ 165 (166)
++ .-||
T Consensus 447 Rt~Ef~Py 454 (542)
T KOG0609|consen 447 RTAEFKPY 454 (542)
T ss_pred hhhcccce
Confidence 54 4444
No 6
>PLN02772 guanylate kinase
Probab=99.92 E-value=1.5e-25 Score=195.27 Aligned_cols=105 Identities=36% Similarity=0.489 Sum_probs=98.0
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 136 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG 136 (166)
.+++++|+|||||||+||+ |+..+|..|+++++||||+|++||.+|++|+|++.++|+.+++++.|+||+++.||+||
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 4679999999999999999 88888888999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHh-----hccCChhHHhhCCccC
Q psy18088 137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVF 163 (166)
Q Consensus 137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~ 163 (166)
+++++++++++ ++++++++.+.|+..+
T Consensus 214 Tsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~ 245 (398)
T PLN02772 214 TSIEAVEVVTDSGKRCILDIDVQGARSVRASS 245 (398)
T ss_pred ccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhc
Confidence 99999999987 6789999999887654
No 7
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.90 E-value=5.5e-24 Score=170.74 Aligned_cols=105 Identities=31% Similarity=0.463 Sum_probs=95.0
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 136 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG 136 (166)
.+++++|+||||||||||+ |.+..+ .|..++++|||+|++||++|++|+|++.++|..+++++.|++|+++.||+||
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~YG 90 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYYG 90 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCceec
Confidence 5779999999999999999 555444 6999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088 137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFP 164 (166)
Q Consensus 137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p 164 (166)
+++++|+++++ +++++.++++.|+..+|
T Consensus 91 t~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~p 123 (206)
T PRK14738 91 VPKAPVRQALASGRDVIVKVDVQGAASIKRLVP 123 (206)
T ss_pred CCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCC
Confidence 99999999887 56678888888887776
No 8
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.88 E-value=3.9e-23 Score=156.39 Aligned_cols=103 Identities=44% Similarity=0.710 Sum_probs=94.6
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCCCh
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ 139 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~~ 139 (166)
+++|+||||||||||+ |...++..|..++++|||+|+.||.+|++|+|++.++|.++++++.|++|+++.+|+||+++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 4789999999999999 66666767999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088 140 CGRQNGRN-----YLIFNTLAAKCLPTVFP 164 (166)
Q Consensus 140 ~~I~~ile-----~v~L~~~~~~~l~~~~p 164 (166)
+.++++++ +++++.++++.|+..+|
T Consensus 81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~~ 110 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKSYP 110 (137)
T ss_pred HHHHHHHhCCCeEEEEecHHHHHHHHHcCC
Confidence 99999988 57788999999987765
No 9
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.80 E-value=7.4e-20 Score=144.89 Aligned_cols=105 Identities=36% Similarity=0.507 Sum_probs=92.3
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 136 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG 136 (166)
++++|+|+||||||||||+ |...++ .+...+++|||+|+.|+++|.+|+|++.++|..++.++.|++++++.+|.||
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 82 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG 82 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence 3569999999999999999 555555 6888999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088 137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFP 164 (166)
Q Consensus 137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p 164 (166)
++...++++++ +++++.++...+++.+|
T Consensus 83 ~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~ 115 (205)
T PRK00300 83 TPRSPVEEALAAGKDVLLEIDWQGARQVKKKMP 115 (205)
T ss_pred CcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCC
Confidence 99999999887 45677888777766554
No 10
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.78 E-value=4e-19 Score=137.88 Aligned_cols=103 Identities=39% Similarity=0.576 Sum_probs=90.5
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCC
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~ 137 (166)
+++++|+||||||||||+ |...++. +...+++|||+|+.|+.+|.+|+|++.++|...+.++.|+++..+.+|.||+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 79 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGT 79 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCC
Confidence 458999999999999999 5555664 6778899999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHh-----hccCChhHHhhCCccC
Q psy18088 138 SQCGRQNGRN-----YLIFNTLAAKCLPTVF 163 (166)
Q Consensus 138 ~~~~I~~ile-----~v~L~~~~~~~l~~~~ 163 (166)
+.+.++++++ +++++..+.+.++..+
T Consensus 80 ~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~ 110 (180)
T TIGR03263 80 PKSPVEEALAAGKDVLLEIDVQGARQVKKKF 110 (180)
T ss_pred cHHHHHHHHHCCCeEEEECCHHHHHHHHHhC
Confidence 9999999887 4677777877666555
No 11
>KOG0707|consensus
Probab=99.78 E-value=1.5e-19 Score=147.43 Aligned_cols=99 Identities=38% Similarity=0.518 Sum_probs=88.6
Q ss_pred cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCCC
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~ 138 (166)
+.++|.||||+||+||+ |++.+++.|+..++||||.||.||++|++|+|++.++|..++..+.|+||+++.+|+||++
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGts 117 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTS 117 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCch
Confidence 68999999999999999 8888998999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHh-----hccCChhHHhhC
Q psy18088 139 QCGRQNGRN-----YLIFNTLAAKCL 159 (166)
Q Consensus 139 ~~~I~~ile-----~v~L~~~~~~~l 159 (166)
.+++++... .++++-++....
T Consensus 118 i~av~~~~~~gk~~ildId~qg~~~i 143 (231)
T KOG0707|consen 118 IAAVQRLMLSGKVCILDIDLQGVQPI 143 (231)
T ss_pred HHHHHHHHhcCCcceeehhhcCceee
Confidence 988877766 344444444444
No 12
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.2e-15 Score=126.08 Aligned_cols=108 Identities=12% Similarity=0.143 Sum_probs=83.0
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~ 105 (166)
++.++.+++.+. ..++.++|+.|.+|| +++|+||||||||||+ +++++.. |..|+ ++|.
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GE-----fvsilGpSGcGKSTLLriiAGL~~------------p~~G~V~~~g~ 65 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGE-----FVAILGPSGCGKSTLLRLIAGLEK------------PTSGEVLLDGR 65 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCc
Confidence 456778888886 788999999999999 9999999999999999 9999887 88887 4665
Q ss_pred ceeecCHHHHHHHHHcCCccceeeehhh-hcCCC-----h----HHHHHHHhhccCChhH
Q psy18088 106 AYHFVTRADMEERIAAGEFLEHAEFAAN-LYGTS-----Q----CGRQNGRNYLIFNTLA 155 (166)
Q Consensus 106 ~y~fvs~~~f~~~~~~~~fle~~~~~gn-~yG~~-----~----~~I~~ile~v~L~~~~ 155 (166)
.. .-...+...++|+..+++|.++.+| ..|.. + +.+++.++.|+|...+
T Consensus 66 ~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~ 124 (248)
T COG1116 66 PV-TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE 124 (248)
T ss_pred cc-CCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh
Confidence 43 2234456667899999999999999 34433 2 2456666677776443
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.51 E-value=1e-14 Score=126.19 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=90.4
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~ 105 (166)
.+++++|++.+. ..+++++|+.|++|| +++|+||||||||||+ +|+++.. |.+|+ ++|+
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Ge-----f~~lLGPSGcGKTTlLR~IAGfe~------------p~~G~I~l~G~ 67 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGE-----FVTLLGPSGCGKTTLLRMIAGFEQ------------PSSGEILLDGE 67 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCc-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCE
Confidence 677888998886 888999999999999 9999999999999999 9999987 99997 4898
Q ss_pred ceeecCHHH--HHHHHHcCCccceeeehhh-hcCCC-----h-H----HHHHHHhhccCChhH
Q psy18088 106 AYHFVTRAD--MEERIAAGEFLEHAEFAAN-LYGTS-----Q-C----GRQNGRNYLIFNTLA 155 (166)
Q Consensus 106 ~y~fvs~~~--f~~~~~~~~fle~~~~~gn-~yG~~-----~-~----~I~~ile~v~L~~~~ 155 (166)
++.-++.++ +..++|+..++++.++.+| .||+. . + .++++++.|.|...+
T Consensus 68 ~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~ 130 (352)
T COG3842 68 DITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA 130 (352)
T ss_pred ECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh
Confidence 877666544 5678999999999999999 78876 1 2 456666677777543
No 14
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.47 E-value=5.2e-14 Score=110.74 Aligned_cols=84 Identities=17% Similarity=0.054 Sum_probs=68.0
Q ss_pred CcEEEEEcCCCCChhhhc-ccccc-ccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCC
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRTV-LDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~~-~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~ 137 (166)
+.+++|+||||||||||+ ++... +..|....+.+||+++.+ +.++.+++.++|.+++..+.|.+++.+.||+||+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchh---HHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 558999999999999999 55543 324666677788876443 5578889999999999999998777899999999
Q ss_pred ChHHHHHHHh
Q psy18088 138 SQCGRQNGRN 147 (166)
Q Consensus 138 ~~~~I~~ile 147 (166)
++ ++++.++
T Consensus 79 ~~-~~~~~l~ 87 (186)
T PRK10078 79 GI-EIDLWLH 87 (186)
T ss_pred cH-HHHHHHh
Confidence 98 5888776
No 15
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1.3e-13 Score=108.06 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=79.9
Q ss_pred cCCcEEEEEcCCCCChhhhc--ccccccc--ceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhh
Q psy18088 58 HFFACILHVDFAMFGKTSFL--FLRTVLD--RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAAN 133 (166)
Q Consensus 58 ~~~~~ivLiGPSGsGKSTL~--Li~~~~~--~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn 133 (166)
+++++|+++||||+||+||+ ....++. ++.++-.+.||+...| |.++..+|..+|.++-.+|.|.-.++..|.
T Consensus 3 ~~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL 79 (192)
T COG3709 3 FMGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGL 79 (192)
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---cccccccCHHHHHHHhhcCceeEEehhcCc
Confidence 46889999999999999999 4444444 4889999999987665 457778999999999999999999999999
Q ss_pred hcCCChHHHHHHHh---hccCC------hhHHhhCCcc
Q psy18088 134 LYGTSQCGRQNGRN---YLIFN------TLAAKCLPTV 162 (166)
Q Consensus 134 ~yG~~~~~I~~ile---~v~L~------~~~~~~l~~~ 162 (166)
.||++.+ |++.++ .++.| |++...+.++
T Consensus 80 ~Ygip~e-Id~wl~~G~vvl~NgSRa~Lp~arrry~~L 116 (192)
T COG3709 80 SYGIPAE-IDLWLAAGDVVLVNGSRAVLPQARRRYPQL 116 (192)
T ss_pred cccCchh-HHHHHhCCCEEEEeccHhhhHHHHHhhhcc
Confidence 9999965 777666 34444 5555555443
No 16
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.46 E-value=9.9e-14 Score=115.63 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=89.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~ 105 (166)
|.++++|++.+. ..+.++.+++|..|| +++|+|||||||||++ +|+++-. |.+|+ ++|+
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~ge-----f~vliGpSGsGKTTtLkMINrLie------------pt~G~I~i~g~ 63 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGE-----FLVLIGPSGSGKTTTLKMINRLIE------------PTSGEILIDGE 63 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCe-----EEEEECCCCCcHHHHHHHHhcccC------------CCCceEEECCe
Confidence 457889999996 667889999999999 9999999999999999 9999887 99998 4888
Q ss_pred ceeecCHHHH----HHHHHcCCccceeeehhh------hcCCChH----HHHHHHhhccCCh-hHHhhC
Q psy18088 106 AYHFVTRADM----EERIAAGEFLEHAEFAAN------LYGTSQC----GRQNGRNYLIFNT-LAAKCL 159 (166)
Q Consensus 106 ~y~fvs~~~f----~~~~~~~~fle~~~~~gn------~yG~~~~----~I~~ile~v~L~~-~~~~~l 159 (166)
+..-++..+. .+.+|+-.++++.++..| +-|-+++ .+++.++.++|+| +..+++
T Consensus 64 ~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry 132 (309)
T COG1125 64 DISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRY 132 (309)
T ss_pred ecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcC
Confidence 7665555554 456899999999999988 3455554 4566667899987 354444
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.41 E-value=7.4e-14 Score=120.26 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=83.0
Q ss_pred ceEEeeecceeeec-CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTCIS-ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
.+++.++++.+... ++.+.|+.|++|| +++|+||||||||||+ +|+++.. |.+|++ +|.
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Ge-----f~vllGPSGcGKSTlLr~IAGLe~------------~~~G~I~i~g~ 65 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGE-----FVVLLGPSGCGKSTLLRMIAGLEE------------PTSGEILIDGR 65 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCE
Confidence 45677888888755 8889999999999 9999999999999999 9999987 999984 887
Q ss_pred ceeecCHHH--HHHHHHcCCccceeeehhh-hcCC-----ChHHH----HHHHhhccCChh
Q psy18088 106 AYHFVTRAD--MEERIAAGEFLEHAEFAAN-LYGT-----SQCGR----QNGRNYLIFNTL 154 (166)
Q Consensus 106 ~y~fvs~~~--f~~~~~~~~fle~~~~~gn-~yG~-----~~~~I----~~ile~v~L~~~ 154 (166)
+...++..+ +...+|+..+.++.++.+| .||+ +++++ +++.+.+.+++.
T Consensus 66 ~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~l 126 (338)
T COG3839 66 DVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHL 126 (338)
T ss_pred ECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhH
Confidence 755554443 3335788899999999999 4554 34444 455556666543
No 18
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.39 E-value=8.2e-13 Score=102.57 Aligned_cols=83 Identities=18% Similarity=0.148 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCChhhhc--ccccccc--ceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVLD--RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 136 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~~--~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG 136 (166)
++++|+||||||||||+ |...++. .+.+..++|||+++ .+|.+|++++.++|..+...+.|.++..+.++.||
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 48999999999999999 4443332 35677899999753 46889999999999999999999999999999999
Q ss_pred CChHHHHHHHh
Q psy18088 137 TSQCGRQNGRN 147 (166)
Q Consensus 137 ~~~~~I~~ile 147 (166)
++.. +...+.
T Consensus 79 ~~~~-i~~~~~ 88 (179)
T TIGR02322 79 IPAE-IDQWLE 88 (179)
T ss_pred ChHH-HHHHHh
Confidence 9873 555554
No 19
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.30 E-value=5.5e-12 Score=103.36 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=74.7
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHH---H
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRAD---M 115 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~---f 115 (166)
..++.++++.|++|| +++|+||||||||||+ ++..+-. |.+|. ++|.+....+..+ |
T Consensus 18 ~~~L~~v~l~i~~Ge-----~vaI~GpSGSGKSTLLniig~ld~------------pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 18 VEALKDVNLEIEAGE-----FVAIVGPSGSGKSTLLNLLGGLDK------------PTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred eEecccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhcccC------------CCCceEEECCEEcCcCCHHHHHHH
Confidence 568889999999999 9999999999999999 9998876 88887 5887766666544 3
Q ss_pred HH-----HHHcCCccceeeehhhh------cCCCh----HHHHHHHhhccCChhHH
Q psy18088 116 EE-----RIAAGEFLEHAEFAANL------YGTSQ----CGRQNGRNYLIFNTLAA 156 (166)
Q Consensus 116 ~~-----~~~~~~fle~~~~~gn~------yG~~~----~~I~~ile~v~L~~~~~ 156 (166)
++ .+|+-.+++..++.+|. .|.+. ..++++++.|+|++...
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~ 136 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL 136 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc
Confidence 33 37888899999999982 34443 34555666777775444
No 20
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.29 E-value=6.8e-12 Score=103.65 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=89.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~ 105 (166)
..+...|++.+. ..+++++++.|.+|| +++|+||||+|||||+ +|.++-. |..|| ++|.
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Ge-----i~~iiGgSGsGKStlLr~I~Gll~------------P~~GeI~i~G~ 70 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGE-----ILAILGGSGSGKSTLLRLILGLLR------------PDKGEILIDGE 70 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCc-----EEEEECCCCcCHHHHHHHHhccCC------------CCCCeEEEcCc
Confidence 566778888885 668899999999998 8999999999999999 7777664 88998 4898
Q ss_pred ceeecCHHHHHH-------HHHcCCccceeeehhh-------hcCCChHHHHHHH----hhccCChhHHhhCC
Q psy18088 106 AYHFVTRADMEE-------RIAAGEFLEHAEFAAN-------LYGTSQCGRQNGR----NYLIFNTLAAKCLP 160 (166)
Q Consensus 106 ~y~fvs~~~f~~-------~~~~~~fle~~~~~gn-------~yG~~~~~I~~il----e~v~L~~~~~~~l~ 160 (166)
++.-.+.++... ++|++.++...++.+| +-..+++.++++. +.|+|.+.+.+.++
T Consensus 71 ~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P 143 (263)
T COG1127 71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP 143 (263)
T ss_pred chhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc
Confidence 887778766533 3789999999999888 2345666666654 47888887666543
No 21
>KOG0058|consensus
Probab=99.28 E-value=3.8e-12 Score=117.54 Aligned_cols=101 Identities=18% Similarity=0.251 Sum_probs=82.7
Q ss_pred CceEEeeeccee----eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088 29 GITVRILLNYRT----CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE-- 101 (166)
Q Consensus 29 ~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge-- 101 (166)
|-.++.+|++.+ ..+++.+++|.|++|| .++|+||||+||||++ |+.++.+ |.+|.
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe-----~vALVGPSGsGKSTiasLL~rfY~------------PtsG~Il 526 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGE-----VVALVGPSGSGKSTIASLLLRFYD------------PTSGRIL 526 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCC-----EEEEECCCCCCHHHHHHHHHHhcC------------CCCCeEE
Confidence 467888988887 3678999999999888 8999999999999999 9999998 99998
Q ss_pred cCCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCChHHHHHHH
Q psy18088 102 VDGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTSQCGRQNGR 146 (166)
Q Consensus 102 ~~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~~~~I~~il 146 (166)
+||++...++..-+++. +.|...+..+++.+| .||.+..+.+++.
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~ 575 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIE 575 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHH
Confidence 49998766676666654 466778889999999 8998764444443
No 22
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.27 E-value=9.2e-12 Score=101.61 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=79.5
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~ 105 (166)
+.++.++++.+. ..++.++|+.|++|| .++|+||||||||||+ .++.+.. |.+|+ ++|.
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Ge-----vv~iiGpSGSGKSTlLRclN~LE~------------~~~G~I~i~g~ 64 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGE-----VVVIIGPSGSGKSTLLRCLNGLEE------------PDSGSITVDGE 64 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCC-----EEEEECCCCCCHHHHHHHHHCCcC------------CCCceEEECCE
Confidence 456778899996 778999999999999 8999999999999999 8888876 88887 4775
Q ss_pred ceeec-CHHHHHH----HHHcCCccceeeehhhh-------cCCChHHHHH----HHhhccCChhH
Q psy18088 106 AYHFV-TRADMEE----RIAAGEFLEHAEFAANL-------YGTSQCGRQN----GRNYLIFNTLA 155 (166)
Q Consensus 106 ~y~fv-s~~~f~~----~~~~~~fle~~~~~gn~-------yG~~~~~I~~----ile~v~L~~~~ 155 (166)
+...- +...+++ .+|+-.+.++.++.+|. .|.++++.++ .++.|+|.+.+
T Consensus 65 ~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka 130 (240)
T COG1126 65 DVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKA 130 (240)
T ss_pred eccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhh
Confidence 42211 2222222 36888899999999882 5667654443 33356666554
No 23
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.24 E-value=9.5e-12 Score=111.61 Aligned_cols=106 Identities=17% Similarity=0.182 Sum_probs=83.6
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG 104 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G 104 (166)
-.++++|++.+. ..++.+.++.+++|+ .++|+||||||||||+ |+.++.+ |.+|+ ++|
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~-----~vaIvG~SGsGKSTLl~lL~g~~~------------p~~G~I~i~g 396 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGE-----RVAILGPSGSGKSTLLMLLTGLLD------------PLQGEVTLDG 396 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECC
Confidence 367888887763 457899999999888 8999999999999999 8888776 88998 488
Q ss_pred cceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088 105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~ 153 (166)
++..-+ .+++.+. +.|+.++..+++.+| .||. +.+++.++++.+.+++
T Consensus 397 ~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~ 451 (529)
T TIGR02868 397 VSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLAD 451 (529)
T ss_pred EEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHH
Confidence 886656 6666553 567788999999999 6774 3467888888777653
No 24
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.19 E-value=3e-11 Score=109.40 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=85.7
Q ss_pred eEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 31 TVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 31 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
.++++|++.+. .+++.++++.+++|+ .++|+||||||||||+ |+.++.+ |.+|++ ||+
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge-----~vaiVG~sGsGKSTl~~LL~r~~~------------~~~G~I~idg~ 391 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGE-----KVAIVGPSGSGKSTLIKLLLRLYD------------PTSGEILIDGI 391 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCC-----EEEEECCCCCCHHHHHHHHhccCC------------CCCCeEEECCE
Confidence 67889998886 478999999999888 8999999999999999 8888887 888984 899
Q ss_pred ceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhcc
Q psy18088 106 AYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLI 150 (166)
Q Consensus 106 ~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~ 150 (166)
+..-++....++. +.|+.++..+++.+| .||.+ .+++.++++...
T Consensus 392 dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~ 443 (567)
T COG1132 392 DIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLAN 443 (567)
T ss_pred ehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 8887888887775 457788888999999 78864 467777777554
No 25
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.19 E-value=2.7e-11 Score=112.05 Aligned_cols=107 Identities=15% Similarity=0.102 Sum_probs=86.7
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
-.++++|++.+. ..++.++++.+++|+ .++|+||||||||||+ |+.++.. |.+|++ |
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge-----~vaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~id 513 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGE-----FVAIVGPSGSGKSTLLRLLLGFET------------PESGSVFYD 513 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEEC
Confidence 477889988773 468899999999888 8999999999999999 8888776 889984 9
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhh-hcC--CChHHHHHHHhhccCCh
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYG--TSQCGRQNGRNYLIFNT 153 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG--~~~~~I~~ile~v~L~~ 153 (166)
|++..-++.+.+++. +.|+.++..+++.+| .+| .+.+++.++++.+++++
T Consensus 514 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~ 569 (686)
T TIGR03797 514 GQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAE 569 (686)
T ss_pred CEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHH
Confidence 998877888887765 467778888999999 456 45677888888777654
No 26
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.16 E-value=3.9e-11 Score=108.92 Aligned_cols=106 Identities=21% Similarity=0.203 Sum_probs=81.4
Q ss_pred ceEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088 30 ITVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG 104 (166)
Q Consensus 30 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G 104 (166)
-.++++|++.+ ...++.+.++.+++|+ .++|+||||||||||+ |+.++. |.+|+ ++|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~-----~vaIvG~SGsGKSTL~~lL~g~~-------------p~~G~I~i~g 410 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQ-----RIALVGPSGAGKTSLLNALLGFL-------------PYQGSLKING 410 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCC-------------CCCcEEEECC
Confidence 36677776322 3457889999999888 8999999999999999 777654 44687 488
Q ss_pred cceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088 105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~ 153 (166)
++..-++.+.+.+. +.|+.++..+++.+| .||. +.+++.++++.+.+++
T Consensus 411 ~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~ 466 (588)
T PRK11174 411 IELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSE 466 (588)
T ss_pred EecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHH
Confidence 88877788887774 567889999999999 6774 4567788887766553
No 27
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.15 E-value=2.3e-11 Score=97.51 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=71.0
Q ss_pred eeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeec
Q psy18088 34 ILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFV 110 (166)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fv 110 (166)
+.|.|++....+ ..|..|..+| +++|+||||+|||||+ ||+++.. |..|+ ++|+++.-.
T Consensus 5 ~~V~~~y~~~~~-~fdl~v~~ge-----~vAi~GpSGaGKSTLLnLIAGF~~------------P~~G~i~i~g~d~t~~ 66 (231)
T COG3840 5 DDVRFSYGHLPM-RFDLTVPAGE-----IVAILGPSGAGKSTLLNLIAGFET------------PASGEILINGVDHTAS 66 (231)
T ss_pred cceEEeeCcceE-EEEEeecCCc-----EEEEECCCCccHHHHHHHHHhccC------------CCCceEEEcCeecCcC
Confidence 344444433321 2345566666 8999999999999999 9999887 88887 488876543
Q ss_pred CHHH--HHHHHHcCCccceeeehhh-hcCCCh---------HHHHHHHhhccCC
Q psy18088 111 TRAD--MEERIAAGEFLEHAEFAAN-LYGTSQ---------CGRQNGRNYLIFN 152 (166)
Q Consensus 111 s~~~--f~~~~~~~~fle~~~~~gn-~yG~~~---------~~I~~ile~v~L~ 152 (166)
...+ +..++|.+.++.+.++..| -.|.+. +.++.++..++|.
T Consensus 67 ~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~ 120 (231)
T COG3840 67 PPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA 120 (231)
T ss_pred CcccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChh
Confidence 3222 5667899999999999988 456542 4556666667765
No 28
>PRK08356 hypothetical protein; Provisional
Probab=99.14 E-value=2.7e-11 Score=96.02 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=66.1
Q ss_pred cEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCCC
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~ 138 (166)
.+|+|+||+||||||+. .+.. . .|. .++++++.++.++.++.+|+|++...|..++..+.|++|+.+.+|.||++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~-g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~ 81 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-K-GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED 81 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-C-CCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence 47899999999999999 5554 3 354 88899988888888999999999999999888999999999999999987
No 29
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.14 E-value=3.9e-11 Score=112.14 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=83.0
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
|-..+++|+|.+. ..++.++++.++.|| .++|+|+||||||||+ |+.++.. |..|+ +
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge-----~vaIvG~SGsGKSTL~KLL~gly~------------p~~G~I~~ 532 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGE-----KVAIVGRSGSGKSTLLKLLLGLYK------------PQQGRILL 532 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEE
Confidence 4678889998885 358889999998888 9999999999999999 8888887 99998 4
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCChHHHHHHHh
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTSQCGRQNGRN 147 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~~~~I~~ile 147 (166)
||.|..-++...+++. +.++.++..+++.+| ..|-+..+.+++++
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~ 581 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIE 581 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHH
Confidence 9998888888888874 578899999999999 45555444444444
No 30
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.13 E-value=7.3e-11 Score=109.97 Aligned_cols=106 Identities=12% Similarity=0.142 Sum_probs=83.6
Q ss_pred ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
..++++|++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.++.+ |.+|+ +
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge-----~vaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~i 540 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGE-----VVALVGPSGSGKSTVAALLQNLYQ------------PTGGQVLL 540 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCC-----EEEEECCCCCCHHHHHHHHHhccC------------CCCCEEEE
Confidence 477888888763 357889999999888 8999999999999999 8888776 88897 4
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCC
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFN 152 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~ 152 (166)
||++..-++...+.+. +.|+.++..+++.+| .||.+ .+++.++++.++++
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~ 597 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAH 597 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCH
Confidence 8888766676666654 457778888999999 67754 46677777776654
No 31
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.13 E-value=8.1e-11 Score=106.65 Aligned_cols=107 Identities=19% Similarity=0.178 Sum_probs=83.9
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
-.++++|+|.+. ..++.++++.+++|+ .++|+||||||||||+ ++.++.+ |..|++ +
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~-----~~aIvG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~ 403 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGK-----TVALVGRSGSGKSTIANLLTRFYD------------IDEGEILLD 403 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCC-----EEEEECCCCCCHHHHHHHHHhccC------------CCCceEEEC
Confidence 477778887763 457889999998888 8999999999999999 8888775 888974 8
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC----ChHHHHHHHhhccCCh
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT----SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~----~~~~I~~ile~v~L~~ 153 (166)
|.++.-++.+.+.+. +.|+.++..+++.+| .+|. +.++++++++.+++++
T Consensus 404 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~ 461 (582)
T PRK11176 404 GHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMD 461 (582)
T ss_pred CEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHH
Confidence 888766777776654 466778888999999 5663 4567888888777654
No 32
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.12 E-value=3.5e-11 Score=96.70 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=77.3
Q ss_pred ceEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088 30 ITVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG 104 (166)
Q Consensus 30 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G 104 (166)
+..+++|++.+ ..+++.++||.+++|| ++.|+||||+||||++ ||-.... |..|+ ++|
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Ge-----f~fl~GpSGAGKSTllkLi~~~e~------------pt~G~i~~~~ 63 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGE-----FVFLTGPSGAGKSTLLKLIYGEER------------PTRGKILVNG 63 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCce-----EEEEECCCCCCHHHHHHHHHhhhc------------CCCceEEECC
Confidence 34677888777 4668999999999998 9999999999999999 7766554 77786 477
Q ss_pred cceeecCHHHHHH-------HHHcCCccceeeehhh------hcCCChHHHH----HHHhhccCCh
Q psy18088 105 KAYHFVTRADMEE-------RIAAGEFLEHAEFAAN------LYGTSQCGRQ----NGRNYLIFNT 153 (166)
Q Consensus 105 ~~y~fvs~~~f~~-------~~~~~~fle~~~~~gn------~yG~~~~~I~----~ile~v~L~~ 153 (166)
.+..-++..++.. .+|.-.++...++.+| ..|.+.++++ ++++.|+|..
T Consensus 64 ~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~ 129 (223)
T COG2884 64 HDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH 129 (223)
T ss_pred eecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch
Confidence 6655455444332 3677888999999888 2466655444 4555666653
No 33
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.11 E-value=9.2e-11 Score=108.85 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=85.0
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
+-.++++|++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.++.. |.+|+ +
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge-----~vaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~i 538 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQ-----RVALVGGSGSGKSTIAKLVAGLYQ------------PWSGEILF 538 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEE
Confidence 3477889998774 458899999999888 8999999999999999 8877765 88897 4
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhhh-cCC---ChHHHHHHHhhccCCh
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAANL-YGT---SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~-yG~---~~~~I~~ile~v~L~~ 153 (166)
||++..-++..++++. +.|+.++..+++.+|. +|. +.+++.++++.+++++
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~ 596 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHD 596 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHH
Confidence 8988776777777665 3567788889999993 553 4567778887776653
No 34
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.11 E-value=7.7e-11 Score=109.41 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=84.1
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG 104 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G 104 (166)
-.++++|++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.++.. |.+|+ +||
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~-----~vaIvG~SGsGKSTLlklL~gl~~------------p~~G~I~idg 535 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNS-----KTTIVGMSGSGKSTLAKLLVGFFQ------------ARSGEILLNG 535 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCC-----EEEEECCCCCCHHHHHHHHhccCC------------CCCcEEEECC
Confidence 467788887763 467889999999888 8999999999999999 8888776 88998 489
Q ss_pred cceeecCHHHHHHH---HHcCCccceeeehhh-hcC----CChHHHHHHHhhccCCh
Q psy18088 105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYG----TSQCGRQNGRNYLIFNT 153 (166)
Q Consensus 105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG----~~~~~I~~ile~v~L~~ 153 (166)
++..-++.+++++. +.|+.++..+++.+| .+| .+.+++.++++..++++
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~ 592 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKD 592 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHH
Confidence 88777777777764 467788888999999 456 23466777777666553
No 35
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.11 E-value=3e-11 Score=97.87 Aligned_cols=99 Identities=17% Similarity=0.257 Sum_probs=69.0
Q ss_pred cceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCH
Q psy18088 37 NYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTR 112 (166)
Q Consensus 37 ~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~ 112 (166)
+|+-. ..++.+.|..+.+|| +++++||||||||||+ +++++-. |..|++ +|.. ++.
T Consensus 12 ~y~g~~~~~le~vsL~ia~ge-----~vv~lGpSGcGKTTLLnl~AGf~~------------P~~G~i~l~~r~---i~g 71 (259)
T COG4525 12 SYEGKPRSALEDVSLTIASGE-----LVVVLGPSGCGKTTLLNLIAGFVT------------PSRGSIQLNGRR---IEG 71 (259)
T ss_pred ecCCcchhhhhccceeecCCC-----EEEEEcCCCccHHHHHHHHhcCcC------------cccceEEECCEe---ccC
Confidence 44433 457888999999888 8999999999999999 9999876 777764 4443 333
Q ss_pred HH--HHHHHHcCCccceeeehhh-hcC-----CChHHH----HHHHhhccCChhH
Q psy18088 113 AD--MEERIAAGEFLEHAEFAAN-LYG-----TSQCGR----QNGRNYLIFNTLA 155 (166)
Q Consensus 113 ~~--f~~~~~~~~fle~~~~~gn-~yG-----~~~~~I----~~ile~v~L~~~~ 155 (166)
+. -.-.+|+..+++|.+..+| .|| +++..- .+.+..|+|++..
T Consensus 72 PgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~ 126 (259)
T COG4525 72 PGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAE 126 (259)
T ss_pred CCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccccc
Confidence 22 2334688899999999998 444 555333 3333456666544
No 36
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.10 E-value=1.5e-10 Score=98.64 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=81.9
Q ss_pred eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088 31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE-- 101 (166)
Q Consensus 31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge-- 101 (166)
.++++|++.+. +.++++.|+.|++|+ +++|+|.||+|||||+ +++.+.. |.+|.
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~Ge-----I~GIIG~SGAGKSTLiR~iN~Le~------------PtsG~v~ 64 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGE-----IFGIIGYSGAGKSTLLRLINLLER------------PTSGSVF 64 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCc-----EEEEEcCCCCcHHHHHHHHhccCC------------CCCceEE
Confidence 45677776664 467889999999999 8999999999999999 9999887 99997
Q ss_pred cCCcceeecCHHHHHHH-------HHcCCccceeeehhh-h-----cCCChHHH----HHHHhhccCChh
Q psy18088 102 VDGKAYHFVTRADMEER-------IAAGEFLEHAEFAAN-L-----YGTSQCGR----QNGRNYLIFNTL 154 (166)
Q Consensus 102 ~~G~~y~fvs~~~f~~~-------~~~~~fle~~~~~gn-~-----yG~~~~~I----~~ile~v~L~~~ 154 (166)
++|.+....+.....+. +|.-.++...++.+| . -|.+++++ .+.++.|+|.+.
T Consensus 65 v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk 134 (339)
T COG1135 65 VDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDK 134 (339)
T ss_pred EcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh
Confidence 58988777777776654 455567777888888 2 45666544 445667888744
No 37
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.10 E-value=3.1e-11 Score=102.00 Aligned_cols=107 Identities=20% Similarity=0.116 Sum_probs=80.6
Q ss_pred eEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088 31 TVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK 105 (166)
Q Consensus 31 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~ 105 (166)
.+..++++.+. ..++.++|+.+++|+ +++|+||+|||||||+ ++.+.-. |..|+ ++|.
T Consensus 5 i~~~~l~k~~~~~~~~l~~vs~~i~~Ge-----i~gllG~NGAGKTTllk~l~gl~~------------p~~G~i~i~G~ 67 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGVSFEVEPGE-----IFGLLGPNGAGKTTLLKILAGLLK------------PTSGEILVLGY 67 (293)
T ss_pred eeecceEEEeCCCCEEEeceeEEEcCCe-----EEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEEcCE
Confidence 44567888887 578999999999998 8999999999999999 7777665 78887 4776
Q ss_pred ceeecCHHH----HHHHHHcCCccceeeehhh------hcCCC----hHHHHHHHhhccCChhH
Q psy18088 106 AYHFVTRAD----MEERIAAGEFLEHAEFAAN------LYGTS----QCGRQNGRNYLIFNTLA 155 (166)
Q Consensus 106 ~y~fvs~~~----f~~~~~~~~fle~~~~~gn------~yG~~----~~~I~~ile~v~L~~~~ 155 (166)
+..-- ..+ +..+.+...+.++.+..++ .||.+ .+.++++++.++|.+..
T Consensus 68 ~~~~~-~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~ 130 (293)
T COG1131 68 DVVKE-PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA 130 (293)
T ss_pred eCccC-HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh
Confidence 54221 122 3335677778888888766 58876 35788999999998743
No 38
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.09 E-value=1.3e-10 Score=115.84 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=89.5
Q ss_pred ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccc-------------------
Q psy18088 30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDR------------------- 85 (166)
Q Consensus 30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~------------------- 85 (166)
-.++++|++.+. .+++.++++.+++|+ .++|+||||||||||+ |+.++.+.
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~-----~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~ 1239 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKK-----TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNE 1239 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCC-----EEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccc
Confidence 477888887772 468999999999888 8999999999999999 88775541
Q ss_pred -----------------------eeeeEEeecCCCCCCcc--CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcC
Q psy18088 86 -----------------------FGFSVSHTTRGPRPGEV--DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYG 136 (166)
Q Consensus 86 -----------------------f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG 136 (166)
-....+-+|+.|.+|++ ||++..-++...++.. +.|..++..+++.+| .||
T Consensus 1240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g 1319 (1466)
T PTZ00265 1240 QDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFG 1319 (1466)
T ss_pred cccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcC
Confidence 01122345677788984 9998877787777764 477889999999999 688
Q ss_pred C---ChHHHHHHHhhccCC
Q psy18088 137 T---SQCGRQNGRNYLIFN 152 (166)
Q Consensus 137 ~---~~~~I~~ile~v~L~ 152 (166)
. +.++++++++...+.
T Consensus 1320 ~~~at~eeI~~A~k~A~l~ 1338 (1466)
T PTZ00265 1320 KEDATREDVKRACKFAAID 1338 (1466)
T ss_pred CCCCCHHHHHHHHHHcCCH
Confidence 4 446677777765554
No 39
>KOG0055|consensus
Probab=99.08 E-value=8.2e-11 Score=113.96 Aligned_cols=102 Identities=18% Similarity=0.241 Sum_probs=80.9
Q ss_pred CceEEeeeccee----eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088 29 GITVRILLNYRT----CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE-- 101 (166)
Q Consensus 29 ~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge-- 101 (166)
|-.++.+|++.+ .++++.+.++.|+.|+ .++|||||||||||++ |++++.+ |..|.
T Consensus 986 G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~Gq-----TvALVG~SGsGKSTvI~LLeRfYd------------p~~G~V~ 1048 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQ-----TVALVGPSGSGKSTVISLLERFYD------------PDAGKVK 1048 (1228)
T ss_pred eEEEEeeeEeeCCCCCCchhhcCCcEEecCCC-----EEEEECCCCCCHHHHHHHHHHhcC------------CCCCeEE
Confidence 456777877777 3778889999998777 8999999999999999 9999998 98997
Q ss_pred cCCcceeecCHHHHHH---HHHcCCccceeeehhh-hcCCCh---HHHHHHHh
Q psy18088 102 VDGKAYHFVTRADMEE---RIAAGEFLEHAEFAAN-LYGTSQ---CGRQNGRN 147 (166)
Q Consensus 102 ~~G~~y~fvs~~~f~~---~~~~~~fle~~~~~gn-~yG~~~---~~I~~ile 147 (166)
+||.+..-++....++ ++.|..-+...++.+| .||... ++|.++++
T Consensus 1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak 1101 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAK 1101 (1228)
T ss_pred ECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHH
Confidence 5898877777766665 3577778888999999 899433 44444444
No 40
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.08 E-value=1.9e-10 Score=96.00 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=75.0
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA 106 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~ 106 (166)
++.+++++.+. ..++.++||.+.+|+ +++|+||+|||||||+ .+.+.-. |..|++ +|++
T Consensus 3 L~~~~ls~~y~~~~il~~ls~~i~~G~-----i~~iiGpNG~GKSTLLk~l~g~l~------------p~~G~V~l~g~~ 65 (258)
T COG1120 3 LEVENLSFGYGGKPILDDLSFSIPKGE-----ITGILGPNGSGKSTLLKCLAGLLK------------PKSGEVLLDGKD 65 (258)
T ss_pred eEEEEEEEEECCeeEEecceEEecCCc-----EEEEECCCCCCHHHHHHHHhccCC------------CCCCEEEECCCc
Confidence 55677787774 678889999999888 8999999999999999 7777553 888974 8887
Q ss_pred eeecCHHHHHHH----HHcCCccceeeehh----------hhcCC-Ch---HHHHHHHhhccCChhHHhhCC
Q psy18088 107 YHFVTRADMEER----IAAGEFLEHAEFAA----------NLYGT-SQ---CGRQNGRNYLIFNTLAAKCLP 160 (166)
Q Consensus 107 y~fvs~~~f~~~----~~~~~fle~~~~~g----------n~yG~-~~---~~I~~ile~v~L~~~~~~~l~ 160 (166)
.+-.+..++.+. .|.....+..++.+ +.++. +. +.++++++.+++...+-+.+.
T Consensus 66 i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~ 137 (258)
T COG1120 66 IASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD 137 (258)
T ss_pred hhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc
Confidence 766666666553 23333333333322 12332 22 246666777777766555443
No 41
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.08 E-value=1.6e-10 Score=105.17 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=83.4
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cC
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VD 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~ 103 (166)
..++++|++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.++.+ |.+|+ ++
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~-----~~aivG~sGsGKSTL~~ll~g~~~------------p~~G~I~i~ 400 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGE-----KVALLGRTGCGKSTLLQLLTRAWD------------PQQGEILLN 400 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEEC
Confidence 477888888763 357889999999888 8999999999999999 8887765 88897 48
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~ 153 (166)
|++..-++.+.+.+. +.+..++..+++.+| .||. +.+++.++++.+++++
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~ 457 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEK 457 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHH
Confidence 888766777776653 356677778899999 4653 4567788888777664
No 42
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.06 E-value=2.4e-10 Score=102.53 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=82.1
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
-.++++|++.+. ..++.+.++.+++|+ .++|+||||||||||+ ++.++.+ |..|++ +
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~-----~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~I~~~ 382 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGE-----RVALVGPSGAGKSTLLNLLLGFVD------------PTEGSIAVN 382 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEEC
Confidence 467788887763 257889999998888 8999999999999999 8887775 888985 8
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCC
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFN 152 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~ 152 (166)
|.+..-++.+++.+. +.|..++..+++.+| .+|. +.+++.++++.+++.
T Consensus 383 g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~ 438 (529)
T TIGR02857 383 GVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLD 438 (529)
T ss_pred CEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcH
Confidence 888776777776664 356677778899999 4553 346677777776665
No 43
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.06 E-value=1.5e-10 Score=107.18 Aligned_cols=107 Identities=17% Similarity=0.163 Sum_probs=83.4
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cC
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VD 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~ 103 (166)
-.++++|++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.++.. |.+|+ +|
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~-----~iaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~id 525 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGE-----KVAIIGRIGSGKSTLLKLLLGLYQ------------PTEGSVLLD 525 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEEC
Confidence 467888887763 357889999999888 8999999999999999 8888776 88898 48
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~ 153 (166)
|++..-++...+++. +.|+.++..+++.+| .+|- +.+++.++++.+++.+
T Consensus 526 g~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~ 582 (694)
T TIGR03375 526 GVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTE 582 (694)
T ss_pred CEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHH
Confidence 888766777776654 466778888999999 4563 4567777777766553
No 44
>KOG0055|consensus
Probab=99.05 E-value=1.1e-10 Score=113.20 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=82.4
Q ss_pred hcCceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc
Q psy18088 27 NAGITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE 101 (166)
Q Consensus 27 ~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge 101 (166)
-.|..++++|.+.+. +.++.+.++.|+.|+ .++|+|||||||||++ |+.++.+ |..|+
T Consensus 347 ~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~-----~valVG~SGsGKST~i~LL~Rfyd------------P~~G~ 409 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQ-----TVALVGPSGSGKSTLIQLLARFYD------------PTSGE 409 (1228)
T ss_pred cccceEEEEEEecCCCCCcchhhCCeEEEeCCCC-----EEEEECCCCCCHHHHHHHHHHhcC------------CCCce
Confidence 345788889888883 678889999999888 8999999999999999 9999998 99998
Q ss_pred --cCCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCCh---HHHHHHHh
Q psy18088 102 --VDGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTSQ---CGRQNGRN 147 (166)
Q Consensus 102 --~~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~~---~~I~~ile 147 (166)
+||.+...+..+..+.. +.|...+...++.+| .||.+. ++++++.+
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k 464 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAK 464 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHH
Confidence 48988766666655542 455557888899999 799865 44555543
No 45
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=5.5e-11 Score=102.99 Aligned_cols=107 Identities=16% Similarity=0.162 Sum_probs=72.3
Q ss_pred ceEEeeeccee-e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088 30 ITVRILLNYRT-C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG 104 (166)
Q Consensus 30 ~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G 104 (166)
+++++++++.+ . ..++.++++.+.+|+ +++|+||||||||||+ +|.++.. |.+|++ +|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge-----~~~llG~sGsGKSTLLr~iaGl~~------------p~~G~I~~~g 65 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGE-----FIVLVGPSGCGKSTLLRMVAGLER------------ITSGEIWIGG 65 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCC-----EEEEECCCCCcHHHHHHHHHCCCC------------CCceEEEECC
Confidence 35677888776 3 457888999998888 8999999999999999 8888654 777763 66
Q ss_pred cceeecCHHH--HHHHHHcCCccceeeehhh-hcCC-----Ch----HHHHHHHhhccCCh
Q psy18088 105 KAYHFVTRAD--MEERIAAGEFLEHAEFAAN-LYGT-----SQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 105 ~~y~fvs~~~--f~~~~~~~~fle~~~~~gn-~yG~-----~~----~~I~~ile~v~L~~ 153 (166)
.+....+..+ +...+|...+.++.++.+| .||. +. ..++++++.++|.+
T Consensus 66 ~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 126 (356)
T PRK11650 66 RVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP 126 (356)
T ss_pred EECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence 6543223221 2223455566667788777 3442 32 33556677777754
No 46
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.05 E-value=2.6e-10 Score=103.78 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=83.4
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG 104 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G 104 (166)
-.+++++++.+. ..++.++++.+++|+ .++|+|+||||||||+ ++.++.. |..|++ ||
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge-----~iaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~idg 402 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRG-----FVALVGHTGSGKSTLASLLMGYYP------------LTEGEIRLDG 402 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcccC------------CCCceEEECC
Confidence 367778887663 457889999999888 8999999999999999 8877765 888874 88
Q ss_pred cceeecCHHHHHHH---HHcCCccceeeehhh-hcCC--ChHHHHHHHhhccCCh
Q psy18088 105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT--SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~--~~~~I~~ile~v~L~~ 153 (166)
.+..-++...+.+. +.|+.++..+++.+| .+|- +.+++.++++.+++.+
T Consensus 403 ~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~ 457 (592)
T PRK10790 403 RPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAE 457 (592)
T ss_pred EEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHH
Confidence 88777777777764 466777788899999 4553 4567888888777664
No 47
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=4.7e-11 Score=103.27 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=72.3
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.+.++.+++|+ +++|+||||||||||+ +|.++.. |.+|++ +|.
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~llGpsGsGKSTLLr~IaGl~~------------p~~G~I~~~g~ 68 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGT-----MVTLLGPSGCGKTTVLRLVAGLEK------------PTEGQIFIDGE 68 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHHCCCC------------CCceEEEECCE
Confidence 577888888774 456888999999888 8999999999999999 8888765 777763 665
Q ss_pred ceeecCHH--HHHHHHHcCCccceeeehhh-hcC-----CCh----HHHHHHHhhccCCh
Q psy18088 106 AYHFVTRA--DMEERIAAGEFLEHAEFAAN-LYG-----TSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~yG-----~~~----~~I~~ile~v~L~~ 153 (166)
+..-.+.. .+...+|...+.++.++.+| .|| .++ +.++++++.+++..
T Consensus 69 ~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~ 128 (351)
T PRK11432 69 DVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG 128 (351)
T ss_pred ECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch
Confidence 43222211 12223455566777788777 344 333 34455666677653
No 48
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.04 E-value=4.8e-11 Score=103.28 Aligned_cols=107 Identities=12% Similarity=0.100 Sum_probs=73.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~ 105 (166)
+++++++++.+. ..++.+.++.+.+|+ +++|+||||||||||+ +|+++.. |..|+ ++|+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~GpsGsGKSTLLr~iaGl~~------------p~~G~I~i~g~ 66 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGE-----FVCLLGPSGCGKTTLLRIIAGLER------------QTAGTIYQGGR 66 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHCCCC------------CCceEEEECCE
Confidence 466778888774 456778899998888 8999999999999999 8888764 77776 3665
Q ss_pred ceeecCHHH--HHHHHHcCCccceeeehhh-hcC-----CCh----HHHHHHHhhccCCh
Q psy18088 106 AYHFVTRAD--MEERIAAGEFLEHAEFAAN-LYG-----TSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~fvs~~~--f~~~~~~~~fle~~~~~gn-~yG-----~~~----~~I~~ile~v~L~~ 153 (166)
+........ +...+|...+.++.++.+| .|| .++ ..++++++.++|.+
T Consensus 67 ~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~ 126 (353)
T TIGR03265 67 DITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG 126 (353)
T ss_pred ECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc
Confidence 532222111 2223455667777888887 344 232 34666777777764
No 49
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.04 E-value=8.2e-11 Score=100.22 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=75.2
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc-
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK- 105 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~- 105 (166)
+.+.+++|.+. ..++.++++.|+.|| .++|.||||||||||+ +|+++.. |..|.+ +|.
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge-----~vaLlGpSGaGKsTlLRiIAGLe~------------p~~G~I~~~~~~ 65 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGE-----LVALLGPSGAGKSTLLRIIAGLET------------PDAGRIRLNGRV 65 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCc-----EEEEECCCCCcHHHHHHHHhCcCC------------CCCceEEECCEe
Confidence 34556667774 667778899999888 8999999999999999 9999887 877863 665
Q ss_pred --ceeec--CHHHHHHHHHcCCccceeeehhh-hcCCCh-----------HHHHHHHhhccCChh
Q psy18088 106 --AYHFV--TRADMEERIAAGEFLEHAEFAAN-LYGTSQ-----------CGRQNGRNYLIFNTL 154 (166)
Q Consensus 106 --~y~fv--s~~~f~~~~~~~~fle~~~~~gn-~yG~~~-----------~~I~~ile~v~L~~~ 154 (166)
|..-+ ....+...+|...++.+.++.+| .||... ..+++.++.+.|+..
T Consensus 66 l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~l 130 (345)
T COG1118 66 LFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL 130 (345)
T ss_pred ccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccch
Confidence 32111 11223445677778889999999 788721 345555666666543
No 50
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.03 E-value=3.3e-10 Score=97.11 Aligned_cols=97 Identities=19% Similarity=0.358 Sum_probs=75.2
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHHHH-
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADMEE- 117 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f~~- 117 (166)
+--..+.++.|..|| +++|+|-||||||||+ +++++-+ |..|+ ++|.+..-++..+...
T Consensus 41 vvGv~~~sl~v~~Ge-----IfViMGLSGSGKSTLvR~~NrLie------------pt~G~ilv~g~di~~~~~~~Lr~~ 103 (386)
T COG4175 41 VVGVNDASLDVEEGE-----IFVIMGLSGSGKSTLVRLLNRLIE------------PTRGEILVDGKDIAKLSAAELREL 103 (386)
T ss_pred EEeeccceeeecCCe-----EEEEEecCCCCHHHHHHHHhccCC------------CCCceEEECCcchhcCCHHHHHHH
Confidence 344557788999888 7999999999999999 9999887 99998 4888887778777554
Q ss_pred -------HHHcCCccceeeehhh-hcCCC-----hH----HHHHHHhhccCChhH
Q psy18088 118 -------RIAAGEFLEHAEFAAN-LYGTS-----QC----GRQNGRNYLIFNTLA 155 (166)
Q Consensus 118 -------~~~~~~fle~~~~~gn-~yG~~-----~~----~I~~ile~v~L~~~~ 155 (166)
.+|+-.+++|.++.+| .||+. ++ ...++++.|+|..-+
T Consensus 104 Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred HhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh
Confidence 3788899999999998 67754 32 344555677766443
No 51
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.02 E-value=3.6e-10 Score=102.81 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=82.4
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG 104 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G 104 (166)
..+++++++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.++.. |.+|+ ++|
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~-----~v~IvG~sGsGKSTLl~lL~gl~~------------p~~G~I~i~g 396 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQ-----TVAIVGPTGAGKSTLINLLQRVFD------------PQSGRILIDG 396 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCC-----EEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEEECC
Confidence 467778887763 457889999999888 8999999999999999 7777665 88887 488
Q ss_pred cceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088 105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~ 153 (166)
.+..-++.+.+.+. +.++.++..+++.+| .+|. +.+++.++++.+++++
T Consensus 397 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~ 452 (588)
T PRK13657 397 TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHD 452 (588)
T ss_pred EEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHH
Confidence 88777777777664 356677778999999 5563 3466777777666553
No 52
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.02 E-value=4.1e-10 Score=101.61 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=83.4
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
-.++++|++.+. ..++.+.++.+++|+ .++|+||||+|||||+ ++.++.. |..|++ +
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~-----~v~IvG~sGsGKSTLl~lL~gl~~------------~~~G~I~i~ 392 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGE-----TVALVGRSGSGKSTLVNLIPRFYE------------PDSGQILLD 392 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCC-----EEEEECCCCCCHHHHHHHHHhccC------------CCCCeEEEC
Confidence 466778887652 347889999998888 8999999999999999 8877765 888974 8
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhh-hcC----CChHHHHHHHhhccCChh
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYG----TSQCGRQNGRNYLIFNTL 154 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG----~~~~~I~~ile~v~L~~~ 154 (166)
|+++.-++.+++.+. +.|+.++..+++.+| .+| .+.+++.++++.+++++.
T Consensus 393 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~ 451 (571)
T TIGR02203 393 GHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDF 451 (571)
T ss_pred CEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHH
Confidence 888766677776553 467788889999999 455 345678888887776643
No 53
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.3e-10 Score=102.18 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=82.1
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
..++.+|++++. .+++.++++++++|| -|+|+|+||||||||+ |+.+..+ |..|++ +
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GE-----kvAIlG~SGsGKSTllqLl~~~~~------------~~~G~i~~~ 398 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGE-----KVAILGRSGSGKSTLLQLLAGAWD------------PQQGSITLN 398 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCC-----eEEEECCCCCCHHHHHHHHHhccC------------CCCCeeeEC
Confidence 456778887773 568999999999999 7999999999999999 8888776 889985 7
Q ss_pred CcceeecCHHHHHH---HHHcCCccceeeehhhh-cCCCh---HHHHHHHhhccCChh
Q psy18088 104 GKAYHFVTRADMEE---RIAAGEFLEHAEFAANL-YGTSQ---CGRQNGRNYLIFNTL 154 (166)
Q Consensus 104 G~~y~fvs~~~f~~---~~~~~~fle~~~~~gn~-yG~~~---~~I~~ile~v~L~~~ 154 (166)
|.+...++.....+ +..|...+..+++.+|. .+.+. +++.++++.++|++.
T Consensus 399 g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l 456 (573)
T COG4987 399 GVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKL 456 (573)
T ss_pred CcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHH
Confidence 87766666654443 24666777788999993 44444 666667777777643
No 54
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.01 E-value=3.6e-10 Score=93.38 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=67.9
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
++..+.+++.|. ..++.+.|+.|++|| +++||||+|+||||++ +|.++.. |+.|++ +|.
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl~v~~Ge-----i~~LIGPNGAGKTTlfNlitG~~~------------P~~G~v~~~G~ 66 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSLEVRPGE-----IVGLIGPNGAGKTTLFNLITGFYK------------PSSGTVIFRGR 66 (250)
T ss_pred eeeeccceeecCCEEEEeceeEEEcCCe-----EEEEECCCCCCceeeeeeeccccc------------CCCceEEECCc
Confidence 455668889995 778889999999999 8999999999999999 9998775 888874 787
Q ss_pred ceeecCHHHHHHH-----HHcCCccceeeehhh
Q psy18088 106 AYHFVTRADMEER-----IAAGEFLEHAEFAAN 133 (166)
Q Consensus 106 ~y~fvs~~~f~~~-----~~~~~fle~~~~~gn 133 (166)
++...+..+..++ +|.-..+...++.+|
T Consensus 67 ~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlEN 99 (250)
T COG0411 67 DITGLPPHRIARLGIARTFQITRLFPGLTVLEN 99 (250)
T ss_pred ccCCCCHHHHHhccceeecccccccCCCcHHHH
Confidence 7766666665443 555566666666665
No 55
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.01 E-value=4.9e-10 Score=96.77 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=71.7
Q ss_pred eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088 31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV-- 102 (166)
Q Consensus 31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~-- 102 (166)
++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ +|.++.. |..|++
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Ge-----i~gIiG~sGaGKSTLlr~I~gl~~------------p~~G~I~i 64 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQ-----IYGVIGASGAGKSTLIRCVNLLER------------PTSGSVIV 64 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEE
Confidence 56677877763 357889999999888 8999999999999999 8888765 777864
Q ss_pred CCcceeecCHHHHHH-------HHHcCCccceeeehhh-h-----cCCChH----HHHHHHhhccCCh
Q psy18088 103 DGKAYHFVTRADMEE-------RIAAGEFLEHAEFAAN-L-----YGTSQC----GRQNGRNYLIFNT 153 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~-------~~~~~~fle~~~~~gn-~-----yG~~~~----~I~~ile~v~L~~ 153 (166)
+|.+..-.+..++.. .+|...++...++.+| . .|.++. .+.++++.++|.+
T Consensus 65 ~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~ 132 (343)
T TIGR02314 65 DGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD 132 (343)
T ss_pred CCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence 776644334333321 2344456666677776 2 234433 3455666777764
No 56
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.00 E-value=1.1e-10 Score=101.86 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=72.4
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.+.++.+++|+ +++|+||||||||||+ +|.++.. |..|++ +|.
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~LlGpsGsGKSTLLr~IaGl~~------------p~~G~I~~~g~ 76 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGE-----FLTLLGPSGCGKTTVLRLIAGFET------------PDSGRIMLDGQ 76 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCE
Confidence 567888888774 456778899998888 8999999999999999 8888664 667763 665
Q ss_pred ceeecCHHH--HHHHHHcCCccceeeehhh-hcCC-----ChH----HHHHHHhhccCCh
Q psy18088 106 AYHFVTRAD--MEERIAAGEFLEHAEFAAN-LYGT-----SQC----GRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~fvs~~~--f~~~~~~~~fle~~~~~gn-~yG~-----~~~----~I~~ile~v~L~~ 153 (166)
+....+... +...+|...++++.++.+| .||. +.. .++++++.++|.+
T Consensus 77 ~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~ 136 (375)
T PRK09452 77 DITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEE 136 (375)
T ss_pred ECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch
Confidence 432222211 2223455567777788887 3443 332 3556666777764
No 57
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.99 E-value=4.6e-10 Score=89.21 Aligned_cols=93 Identities=14% Similarity=0.227 Sum_probs=65.9
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHHHHHHH
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRADMEER 118 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f~~~ 118 (166)
...+.+.|+.|++|| +++|.||||||||||+ .++.+-. |.+|++ .|++|...+.+.|++.
T Consensus 16 a~il~~isl~v~~Ge-----~iaitGPSG~GKStllk~va~Lis------------p~~G~l~f~Ge~vs~~~pea~Rq~ 78 (223)
T COG4619 16 AKILNNISLSVRAGE-----FIAITGPSGCGKSTLLKIVASLIS------------PTSGTLLFEGEDVSTLKPEAYRQQ 78 (223)
T ss_pred CeeecceeeeecCCc-----eEEEeCCCCccHHHHHHHHHhccC------------CCCceEEEcCccccccChHHHHHH
Confidence 567788999999999 9999999999999999 6666654 889984 8889888888888764
Q ss_pred H----HcCCccceeeehhhhc--------CCChHHHHHHHhhccCC
Q psy18088 119 I----AAGEFLEHAEFAANLY--------GTSQCGRQNGRNYLIFN 152 (166)
Q Consensus 119 ~----~~~~fle~~~~~gn~y--------G~~~~~I~~ile~v~L~ 152 (166)
+ |... +.-.++.+|+. -..++.....++.+++.
T Consensus 79 VsY~~Q~pa-Lfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~ 123 (223)
T COG4619 79 VSYCAQTPA-LFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP 123 (223)
T ss_pred HHHHHcCcc-ccccchhhccccchHHhccCCChHHHHHHHHHcCCc
Confidence 2 3333 33356666631 12334445555555544
No 58
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=5.1e-10 Score=101.52 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=80.2
Q ss_pred eeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceee
Q psy18088 35 LLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHF 109 (166)
Q Consensus 35 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~f 109 (166)
++++.+ ..+++.+.++.+++|+ .++|+||||||||||+ ++.++-. |..|+ +||.+...
T Consensus 325 ~l~~~y~~g~~~l~~l~~t~~~g~-----~talvG~SGaGKSTLl~lL~G~~~------------~~~G~I~vng~~l~~ 387 (559)
T COG4988 325 NLSFRYPDGKPALSDLNLTIKAGQ-----LTALVGASGAGKSTLLNLLLGFLA------------PTQGEIRVNGIDLRD 387 (559)
T ss_pred ceEEecCCCCcccCCceeEecCCc-----EEEEECCCCCCHHHHHHHHhCcCC------------CCCceEEECCccccc
Confidence 556555 3478889999998888 8999999999999999 7777654 78898 48888888
Q ss_pred cCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088 110 VTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 110 vs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~ 153 (166)
++.+.+.+. +.+..++..+++.+| ..|. +.+++.++++..+|.+
T Consensus 388 l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~ 438 (559)
T COG4988 388 LSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLE 438 (559)
T ss_pred cCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHH
Confidence 888888874 678899999999999 2343 3577778777655543
No 59
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.99 E-value=6.1e-10 Score=100.71 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=79.9
Q ss_pred ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
-.++++|++.+. ..++.++++.+++|| .++|+||||||||||+ ++.++.. |.+|+ +
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge-----~i~IvG~sGsGKSTLlklL~gl~~------------p~~G~I~i 399 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGE-----TVALVGPSGAGKSTLFQLLLRFYD------------PQSGRILL 399 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCC-----EEEEECCCCCCHHHHHHHHHhccC------------CCCCEEEE
Confidence 466778877653 347889999999888 8999999999999999 7777665 88887 4
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCC
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFN 152 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~ 152 (166)
+|.+..-++...+.+. ..++.++..+++.+| .+|. +.+++.++++.+++.
T Consensus 400 ~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~ 456 (576)
T TIGR02204 400 DGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAH 456 (576)
T ss_pred CCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcH
Confidence 8887666666666553 356677888899999 5554 345677777776664
No 60
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.99 E-value=8.8e-11 Score=100.16 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=54.4
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccc--------eeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccce
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEH 127 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~ 127 (166)
++++|+|+||+|||||+|. |...+... +...+++|||+|+.+|++|++|||++..++.+.+..+.|+++
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~ 81 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRD 81 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHH
Confidence 3458999999999999999 65554431 556778899999999999999999997777666555555554
No 61
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=6.2e-10 Score=92.00 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=45.8
Q ss_pred HHHHHhcCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 22 SYIRENAGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
||--+.+.++.++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~~~~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 3 EYTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGK-----VTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred cccCCCCceEEEeeEEEEECCEEEEeeeeeEEcCCC-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence 44444445677888887663 467889999999888 8999999999999999 7777643
No 62
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.96 E-value=9.4e-10 Score=102.06 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=82.6
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
+-.++++|++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.++.. |.+|+ +
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~-----~vaivG~sGsGKSTL~~ll~g~~~------------p~~G~I~i 516 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGE-----FIGIVGPSGSGKSTLTKLLQRLYT------------PQHGQVLV 516 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEE
Confidence 3477888888763 447889999999888 8999999999999999 8888765 88897 4
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCC
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFN 152 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~ 152 (166)
||++..-++.+++.+. +.++.++..+++.+| .+|- +.+++.++++.++++
T Consensus 517 dg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~ 573 (694)
T TIGR01846 517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAH 573 (694)
T ss_pred CCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChH
Confidence 8988777777777664 356677778899998 4553 456677777766654
No 63
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.95 E-value=1.9e-10 Score=99.96 Aligned_cols=110 Identities=10% Similarity=0.084 Sum_probs=72.0
Q ss_pred cCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCC--Ccc-
Q psy18088 28 AGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRP--GEV- 102 (166)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~--ge~- 102 (166)
|+-++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ +|+++.. |.. |++
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~llGpsGsGKSTLLr~iaGl~~------------p~~~~G~i~ 65 (362)
T TIGR03258 3 CGGIRIDHLRVAYGANTVLDDLSLEIEAGE-----LLALIGKSGCGKTTLLRAIAGFVK------------AAGLTGRIA 65 (362)
T ss_pred ceEEEEEEEEEEECCeEEEeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCCCEEEE
Confidence 34567778888774 457888999998888 8999999999999999 8887654 666 653
Q ss_pred -CCcceeecCHH--HHHHHHHcCCccceeeehhh-hc-----CCCh----HHHHHHHhhccCChh
Q psy18088 103 -DGKAYHFVTRA--DMEERIAAGEFLEHAEFAAN-LY-----GTSQ----CGRQNGRNYLIFNTL 154 (166)
Q Consensus 103 -~G~~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~y-----G~~~----~~I~~ile~v~L~~~ 154 (166)
+|.+....+.. .+...+|...+.++.++.+| .| +.+. ..++++++.++|++.
T Consensus 66 ~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~ 130 (362)
T TIGR03258 66 IADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDA 130 (362)
T ss_pred ECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCch
Confidence 55543211111 11223455556677777777 23 3343 245666777777643
No 64
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.95 E-value=2.6e-10 Score=91.10 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=39.3
Q ss_pred eEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGE-----MVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667776663 347888999998888 8999999999999999 7777643
No 65
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.94 E-value=6.4e-10 Score=90.17 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=38.7
Q ss_pred eEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGE-----FVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCcC
Confidence 34556666553 457888999998888 8999999999999999 7777543
No 66
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.94 E-value=3.2e-10 Score=98.13 Aligned_cols=106 Identities=11% Similarity=0.100 Sum_probs=68.8
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA 106 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~ 106 (166)
++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ +|.++.. |.+|++ +|.+
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~Ge-----~~~llGpsGsGKSTLLr~IaGl~~------------p~~G~I~i~g~~ 65 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQ-----MVALLGPSGSGKTTLLRIIAGLEH------------QTSGHIRFHGTD 65 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEE
Confidence 45667777763 457788999998888 8999999999999999 8887654 666763 6654
Q ss_pred eeecCHH--HHHHHHHcCCccceeeehhh-hcC---------CCh----HHHHHHHhhccCCh
Q psy18088 107 YHFVTRA--DMEERIAAGEFLEHAEFAAN-LYG---------TSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 107 y~fvs~~--~f~~~~~~~~fle~~~~~gn-~yG---------~~~----~~I~~ile~v~L~~ 153 (166)
....+.. .+...+|...+.++.++.+| .|+ .+. +.++++++.++|.+
T Consensus 66 i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 128 (353)
T PRK10851 66 VSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH 128 (353)
T ss_pred CCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch
Confidence 3222211 12223455556666777777 333 222 24556666777753
No 67
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=1.3e-09 Score=93.85 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=67.5
Q ss_pred eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088 31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV-- 102 (166)
Q Consensus 31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~-- 102 (166)
++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.+... |.+|++
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Ge-----i~~iiG~nGsGKSTLlk~L~Gl~~------------p~~G~I~~ 64 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGE-----IFGVIGASGAGKSTLIRCINLLER------------PTSGRVLV 64 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEE
Confidence 45667777664 457889999999888 8999999999999999 7777653 667763
Q ss_pred CCcceeecCHHHHHH-------HHHcCCccceeeehhhh------cCCCh----HHHHHHHhhccCCh
Q psy18088 103 DGKAYHFVTRADMEE-------RIAAGEFLEHAEFAANL------YGTSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~-------~~~~~~fle~~~~~gn~------yG~~~----~~I~~ile~v~L~~ 153 (166)
+|.+..-.+..+... +.+...++...++.+|. +|.+. +.+.++++.++|.+
T Consensus 65 ~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 132 (343)
T PRK11153 65 DGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD 132 (343)
T ss_pred CCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence 665543333222211 12333444445666651 34443 23455666777764
No 68
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=2.6e-10 Score=99.61 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=71.9
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
++.++++++.+. ..++.++++.+++|+ +++|+||||||||||+ +|+++.. |..|++ +|+
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge-----~~~llGpsGsGKSTLLr~IaGl~~------------p~~G~I~i~g~ 81 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGE-----IFALLGASGCGKSTLLRMLAGFEQ------------PTAGQIMLDGV 81 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCE
Confidence 577788887774 456778899998888 8999999999999999 8888764 666753 555
Q ss_pred ceeecCHH--HHHHHHHcCCccceeeehhh-hcCC-----Ch----HHHHHHHhhccCCh
Q psy18088 106 AYHFVTRA--DMEERIAAGEFLEHAEFAAN-LYGT-----SQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~yG~-----~~----~~I~~ile~v~L~~ 153 (166)
+....... .+...+|...++++.++.+| .||. +. ..++++++.+++.+
T Consensus 82 ~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~ 141 (377)
T PRK11607 82 DLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE 141 (377)
T ss_pred ECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence 42211111 12223566677888888888 4442 32 23455666677653
No 69
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.93 E-value=1.8e-09 Score=98.11 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=77.0
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
...++++++.+. ..++.+.++.+++|+ .++|+||||||||||+ ++.++.. |.+|++ +
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~-----~~~ivG~sGsGKSTLl~ll~g~~~------------p~~G~i~~~ 375 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQ-----MLGICGPTGSGKSTLLSLIQRHFD------------VSEGDIRFH 375 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCC-----EEEEECCCCCCHHHHHHHHhcccC------------CCCCEEEEC
Confidence 356777776653 357889999998888 8999999999999999 8877665 888874 8
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCC
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFN 152 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~ 152 (166)
|++..-.+...+.+. +.+..++..+++.+| .+|. +.+++.++++.+++.
T Consensus 376 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~ 431 (569)
T PRK10789 376 DIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVH 431 (569)
T ss_pred CEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCH
Confidence 877655566665543 345566667889888 4553 345677777766654
No 70
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=3.8e-10 Score=91.30 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=37.8
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGE-----ILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 456666653 457888999999888 8999999999999999 7777543
No 71
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.93 E-value=2.1e-09 Score=88.91 Aligned_cols=107 Identities=18% Similarity=0.098 Sum_probs=69.9
Q ss_pred ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc-
Q psy18088 30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV- 102 (166)
Q Consensus 30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~- 102 (166)
++..++++..+. ..++.++|+.+.+|| .++|+|+||||||||. ++.++.. |..|++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge-----~lgivGeSGsGKSTL~r~l~Gl~~------------p~~G~I~ 65 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGE-----TLGIVGESGSGKSTLARLLAGLEK------------PSSGSIL 65 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCC-----EEEEEcCCCCCHHHHHHHHhcccC------------CCCceEE
Confidence 455666666663 247889999999999 7999999999999999 7777665 666653
Q ss_pred -CCcc---------------eeecCHHHHHHHHHcCCccceeeehhh------hcCCC--hHHHHHHHhhccCChhHHhh
Q psy18088 103 -DGKA---------------YHFVTRADMEERIAAGEFLEHAEFAAN------LYGTS--QCGRQNGRNYLIFNTLAAKC 158 (166)
Q Consensus 103 -~G~~---------------y~fvs~~~f~~~~~~~~fle~~~~~gn------~yG~~--~~~I~~ile~v~L~~~~~~~ 158 (166)
+|.. +.|.+.. +.+-++.++... .-|.+ ...+.++++.|+|.+..+.+
T Consensus 66 ~~G~~~~~~~~~~~~~~~VQmVFQDp~--------~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R 137 (252)
T COG1124 66 LDGKPLAPKKRAKAFYRPVQMVFQDPY--------SSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDR 137 (252)
T ss_pred ECCcccCccccchhhccceeEEecCCc--------cccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhc
Confidence 5532 2222222 223334443321 12333 34578888899999988877
Q ss_pred CCc
Q psy18088 159 LPT 161 (166)
Q Consensus 159 l~~ 161 (166)
.++
T Consensus 138 ~P~ 140 (252)
T COG1124 138 RPH 140 (252)
T ss_pred Cch
Confidence 653
No 72
>PLN03232 ABC transporter C family member; Provisional
Probab=98.92 E-value=1.5e-09 Score=108.49 Aligned_cols=108 Identities=13% Similarity=0.005 Sum_probs=85.5
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
+..++++|++.+. ..++.++++.+++|| .++|+||||||||||+ ++.++.+ |.+|+ +
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~Ge-----kvaIVG~SGSGKSTL~~lL~rl~~------------p~~G~I~I 1295 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSE-----KVGVVGRTGAGKSSMLNALFRIVE------------LEKGRIMI 1295 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCc------------CCCceEEE
Confidence 3477888887773 358999999999888 8999999999999999 7777766 88998 4
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhhh-cC--CChHHHHHHHhhccCCh
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAANL-YG--TSQCGRQNGRNYLIFNT 153 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~-yG--~~~~~I~~ile~v~L~~ 153 (166)
||++..-++...+++. +.|+.++..+++.+|. ++ .+.+++.++++.+.+.+
T Consensus 1296 dG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~ 1352 (1495)
T PLN03232 1296 DDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKD 1352 (1495)
T ss_pred CCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHH
Confidence 9998877787777764 4677888889999993 33 34567788887766643
No 73
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.92 E-value=1.1e-09 Score=92.76 Aligned_cols=108 Identities=14% Similarity=0.048 Sum_probs=71.0
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~ 105 (166)
+.+++++++.+. ..++.++|+.|++|+ +++|+||+|||||||+ ++.+.-. |..|+ ++|.
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Ge-----i~gllGpNGaGKSTLl~~l~Gl~~------------p~~G~v~i~G~ 69 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGE-----CFGLLGPNGAGKTTTLRMLLGLTH------------PDAGSISLCGE 69 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCc-----EEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCE
Confidence 567888888874 568899999999888 8999999999999999 7777654 66776 3665
Q ss_pred ceeecCHHHHH----HHHHcCCccceeeehhh------hcCCChH----HHHHHHhhccCChhH
Q psy18088 106 AYHFVTRADME----ERIAAGEFLEHAEFAAN------LYGTSQC----GRQNGRNYLIFNTLA 155 (166)
Q Consensus 106 ~y~fvs~~~f~----~~~~~~~fle~~~~~gn------~yG~~~~----~I~~ile~v~L~~~~ 155 (166)
+..-.. .... .+.+...+.++.++.+| .||.+.. .++++++.++|.+..
T Consensus 70 ~~~~~~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 132 (306)
T PRK13537 70 PVPSRA-RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA 132 (306)
T ss_pred ecccch-HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh
Confidence 532111 1121 12344445555566555 3565532 345666777776443
No 74
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.91 E-value=8.2e-10 Score=87.80 Aligned_cols=105 Identities=15% Similarity=0.045 Sum_probs=64.0
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA 106 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~ 106 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+... |..|++ +|.+
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~------------p~~G~v~~~g~~ 64 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGE-----LVQIEGPNGAGKTSLLRILAGLAR------------PDAGEVLWQGEP 64 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCc-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEE
Confidence 45667777664 457889999999888 8999999999999999 7776543 666763 5544
Q ss_pred eeecCHHHHHH----HHHcCCccceeeehhhh------cC-CChHHHHHHHhhccCCh
Q psy18088 107 YHFVTRADMEE----RIAAGEFLEHAEFAANL------YG-TSQCGRQNGRNYLIFNT 153 (166)
Q Consensus 107 y~fvs~~~f~~----~~~~~~fle~~~~~gn~------yG-~~~~~I~~ile~v~L~~ 153 (166)
....+ ..+.+ ..+...+....+..+|. ++ ...+.++++++.+++.+
T Consensus 65 ~~~~~-~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~ 121 (204)
T PRK13538 65 IRRQR-DEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAG 121 (204)
T ss_pred cccch-HHhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHH
Confidence 22111 11111 11223344444555542 22 12345677777777753
No 75
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=6.1e-10 Score=90.07 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=36.7
Q ss_pred Eeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGE-----FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCc
Confidence 445665553 457888999999888 8999999999999999 777654
No 76
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=5.7e-10 Score=90.06 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=45.2
Q ss_pred eEEeeecceee-e----cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088 31 TVRILLNYRTC-I----SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV-- 102 (166)
Q Consensus 31 ~~~~~~~~~~~-~----~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~-- 102 (166)
++++++++.+. . .++.++++.+++|+ +++|+||||||||||+ ++.+... |..|++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~ 64 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGE-----IFGIIGRSGAGKSTLIRCINGLER------------PTSGSVLV 64 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEE
Confidence 44566666653 2 57888999998888 8999999999999999 7777543 666763
Q ss_pred CCcce
Q psy18088 103 DGKAY 107 (166)
Q Consensus 103 ~G~~y 107 (166)
+|.+.
T Consensus 65 ~g~~~ 69 (233)
T cd03258 65 DGTDL 69 (233)
T ss_pred CCEEc
Confidence 56543
No 77
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.90 E-value=2.4e-09 Score=97.80 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=76.1
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG 104 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G 104 (166)
..+++++++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.+... |.+|++ +|
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~-----~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g 396 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQ-----TVAIVGPTGAGKTTLINLLQRVYD------------PTVGQILIDG 396 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCC-----EEEEECCCCCCHHHHHHHHccCCC------------CCCCEEEECC
Confidence 466788887763 357889999999888 8999999999999999 7777665 888874 78
Q ss_pred cceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCC
Q psy18088 105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFN 152 (166)
Q Consensus 105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~ 152 (166)
.+..-++.+.+.+. +.++.++..+++.+| .+|.+ .+++.++++.+.+.
T Consensus 397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~ 451 (585)
T TIGR01192 397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH 451 (585)
T ss_pred EEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 77655566655543 344556667888888 45533 45566666655544
No 78
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.6e-09 Score=88.58 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=41.3
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQE-----IVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCe-----EEEEECCCCCCHHHHHHHHhCCc
Confidence 577788887774 567889999998888 8999999999999999 777764
No 79
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.89 E-value=4.5e-10 Score=97.64 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=66.4
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA 106 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~ 106 (166)
++++++++.+. ..++.+.|+.+++|+ +++|+||||||||||+ +|.++.. |.+|++ +|.+
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge-----~~~l~G~nGsGKSTLL~~iaGl~~------------p~~G~I~~~g~~ 66 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGE-----FVVFVGPSGCGKSTLLRMIAGLED------------ITSGDLFIGEKR 66 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCEE
Confidence 55677777764 457888999998888 8999999999999999 8887654 666653 5544
Q ss_pred eeecCHH--HHHHHHHcCCccceeeehhh-hc-----CCCh----HHHHHHHhhccCCh
Q psy18088 107 YHFVTRA--DMEERIAAGEFLEHAEFAAN-LY-----GTSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 107 y~fvs~~--~f~~~~~~~~fle~~~~~gn-~y-----G~~~----~~I~~ile~v~L~~ 153 (166)
....+.. .+....|...+.++.++.+| .| +.+. +.++++++.++|..
T Consensus 67 i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 125 (369)
T PRK11000 67 MNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH 125 (369)
T ss_pred CCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence 3211111 11122344445555666666 23 3332 23556666777753
No 80
>PLN03130 ABC transporter C family member; Provisional
Probab=98.89 E-value=2.2e-09 Score=107.95 Aligned_cols=107 Identities=16% Similarity=0.038 Sum_probs=85.5
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
|-.++++|++.+. ..++.++++.+++|| .|+|+|+||||||||+ ++.++.+ |.+|+ +
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~Ge-----kVaIVGrSGSGKSTLl~lL~rl~~------------p~~G~I~I 1298 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSE-----KVGIVGRTGAGKSSMLNALFRIVE------------LERGRILI 1298 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCcCC------------CCCceEEE
Confidence 4577888887763 358999999999888 8999999999999999 8887776 88898 4
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhhh-cC--CChHHHHHHHhhccCC
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAANL-YG--TSQCGRQNGRNYLIFN 152 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~-yG--~~~~~I~~ile~v~L~ 152 (166)
||++..-++..++++. +.|+.++..+++.+|. ++ .+.+++.++++.+.+.
T Consensus 1299 DG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~ 1354 (1622)
T PLN03130 1299 DGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLK 1354 (1622)
T ss_pred CCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcH
Confidence 9999887888887764 4677888889999993 43 2456778888766654
No 81
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.89 E-value=1.3e-09 Score=93.98 Aligned_cols=108 Identities=11% Similarity=0.022 Sum_probs=70.6
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++||.|.+|+ +++|+||+|+|||||+ ++.++.. |..|++ +|.
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Ge-----i~gLlGpNGaGKSTLl~~L~Gl~~------------p~~G~i~i~G~ 103 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGE-----CFGLLGPNGAGKSTIARMILGMTS------------PDAGKITVLGV 103 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHcCCC------------CCceEEEECCE
Confidence 678889998885 568899999999888 8999999999999999 7777654 677763 665
Q ss_pred ceeecCHHHHH----HHHHcCCccceeeehhh------hcCCChH----HHHHHHhhccCChhH
Q psy18088 106 AYHFVTRADME----ERIAAGEFLEHAEFAAN------LYGTSQC----GRQNGRNYLIFNTLA 155 (166)
Q Consensus 106 ~y~fvs~~~f~----~~~~~~~fle~~~~~gn------~yG~~~~----~I~~ile~v~L~~~~ 155 (166)
+..... .... .+.+...+.++.++.+| .||.+.. .++++++.++|.+..
T Consensus 104 ~~~~~~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~ 166 (340)
T PRK13536 104 PVPARA-RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA 166 (340)
T ss_pred ECCcch-HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh
Confidence 432111 1111 12344444455555554 3555432 344566677776443
No 82
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.89 E-value=4.7e-10 Score=89.56 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=37.0
Q ss_pred Eeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~-----~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGE-----FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCC-----EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 445655542 357888999998888 8999999999999999 7777543
No 83
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.89 E-value=1.8e-09 Score=98.01 Aligned_cols=106 Identities=21% Similarity=0.122 Sum_probs=75.8
Q ss_pred ceEEeeecceeee------cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc
Q psy18088 30 ITVRILLNYRTCI------SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV 102 (166)
Q Consensus 30 ~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~ 102 (166)
..++++|++.+.. .++.++++.+++|+ .++|+||||||||||+ ++.++.. |.+|++
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~-----~~aivG~sGsGKSTl~~ll~g~~~------------p~~G~i 399 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGD-----IVFIVGENGCGKSTLAKLFCGLYI------------PQEGEI 399 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEE
Confidence 4678888877642 37888999998888 8999999999999999 8888766 888874
Q ss_pred --CCcceeecCHHHHHHH---HHcCCccceeeehhhhcC-CChHHHHHHHhhccCC
Q psy18088 103 --DGKAYHFVTRADMEER---IAAGEFLEHAEFAANLYG-TSQCGRQNGRNYLIFN 152 (166)
Q Consensus 103 --~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~yG-~~~~~I~~ile~v~L~ 152 (166)
+|++....+..++... +.++.++...++..|... .+.+++.++++.+++.
T Consensus 400 ~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~ 455 (555)
T TIGR01194 400 LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIA 455 (555)
T ss_pred EECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCc
Confidence 8877665666655543 335556666666666321 2345566777766655
No 84
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.88 E-value=1.3e-09 Score=86.91 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=64.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+... |..|++ +|.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~ 64 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGE-----ALVLTGPNGSGKTTLLRLIAGLLP------------PAAGTIKLDGG 64 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCE
Confidence 345667776653 457888999998888 8999999999999999 7777643 666653 554
Q ss_pred ceeecC-HHHHHHHHHcCCccceeeehhhh------cCCChHHHHHHHhhccCCh
Q psy18088 106 AYHFVT-RADMEERIAAGEFLEHAEFAANL------YGTSQCGRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~fvs-~~~f~~~~~~~~fle~~~~~gn~------yG~~~~~I~~ile~v~L~~ 153 (166)
+..... ...+....++..+..+.+..+|. ++.....+.++++.+++.+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~ 119 (207)
T PRK13539 65 DIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP 119 (207)
T ss_pred eCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH
Confidence 321000 00011111233333444555542 2333445777777777754
No 85
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.88 E-value=1.5e-09 Score=89.62 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=53.9
Q ss_pred ceEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088 30 ITVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG 104 (166)
Q Consensus 30 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G 104 (166)
++++++|++.+ ..+++.++++.+.+|| +++|+||||+|||||+ .+++.-+ |..|++ +|
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE-----~VaiIG~SGaGKSTLLR~lngl~d------------~t~G~i~~~g 65 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGE-----MVAIIGPSGAGKSTLLRSLNGLVD------------PTSGEILFNG 65 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCc-----EEEEECCCCCcHHHHHHHHhcccC------------CCcceEEecc
Confidence 46778888888 3778889999999999 9999999999999999 7777666 777874 56
Q ss_pred cceeecCHHHHH
Q psy18088 105 KAYHFVTRADME 116 (166)
Q Consensus 105 ~~y~fvs~~~f~ 116 (166)
.+..-....+..
T Consensus 66 ~~i~~~~~k~lr 77 (258)
T COG3638 66 VQITKLKGKELR 77 (258)
T ss_pred cchhccchHHHH
Confidence 544333433333
No 86
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.88 E-value=2.1e-09 Score=89.48 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=39.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+++++++.+. ..++.++++.|.+|+ +++|+||+|+|||||+ ++.+
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G~-----~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISLSVEKGE-----ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEEEEcCCc-----EEEEECCCCCCHHHHHHHHhC
Confidence 456778887776 369999999999888 8999999999999999 5555
No 87
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.88 E-value=3.9e-09 Score=85.04 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=38.0
Q ss_pred EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 2 RAENLSKRYGKRKVVNGVSLSVKQGE-----IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eEEEEEEEeCCEEeeccceeEecCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 3456666653 457889999999888 8999999999999999 777754
No 88
>KOG0056|consensus
Probab=98.88 E-value=9.7e-10 Score=98.97 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=76.5
Q ss_pred CceEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cC
Q psy18088 29 GITVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VD 103 (166)
Q Consensus 29 ~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~ 103 (166)
|-.++.+|++.+ ...++.|+||.+++|+ .++|+||||+||||++ |+-++.+ ..+|. +|
T Consensus 536 G~i~fsnvtF~Y~p~k~vl~disF~v~pGk-----tvAlVG~SGaGKSTimRlLfRffd------------v~sGsI~iD 598 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKPVLSDISFTVQPGK-----TVALVGPSGAGKSTIMRLLFRFFD------------VNSGSITID 598 (790)
T ss_pred CeEEEEEeEEecCCCCceeecceEEecCCc-----EEEEECCCCCchhHHHHHHHHHhh------------ccCceEEEc
Confidence 567788888776 4788999999998777 8999999999999999 7777776 66675 69
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCChHH
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTSQCG 141 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~~~~ 141 (166)
|+|...++....+.- +.|+..+...++..| .||.+.++
T Consensus 599 gqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~As 640 (790)
T KOG0056|consen 599 GQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSAS 640 (790)
T ss_pred CchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCC
Confidence 999877777777764 467788888888877 68876533
No 89
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.88 E-value=1.5e-09 Score=98.13 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=73.5
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG 104 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G 104 (166)
..+++++++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.+... |.+|++ +|
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~-----~~aivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g 384 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGE-----LLFLIGGNGSGKSTLAMLLTGLYQ------------PQSGEILLDG 384 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEEECC
Confidence 467888887763 347889999999888 8999999999999999 8877665 888874 78
Q ss_pred cceeecCHHHHHHH---HHcCCccceeeehhhhcCCChHHHHHHHhhccCCh
Q psy18088 105 KAYHFVTRADMEER---IAAGEFLEHAEFAANLYGTSQCGRQNGRNYLIFNT 153 (166)
Q Consensus 105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~yG~~~~~I~~ile~v~L~~ 153 (166)
++....+...+.+. +.++.++..+++..|.-..+.+.+++.++.++++.
T Consensus 385 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~ 436 (547)
T PRK10522 385 KPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAH 436 (547)
T ss_pred EECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCch
Confidence 77655555555543 23344455555555521233455666777666653
No 90
>PTZ00243 ABC transporter; Provisional
Probab=98.87 E-value=2.5e-09 Score=107.28 Aligned_cols=108 Identities=15% Similarity=0.094 Sum_probs=86.4
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
|-+++++|++.+. ..++.++++.|++|+ .|+|+|+||||||||+ ++.++.+ |..|+ +
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~Ge-----kVaIVGrTGSGKSTLl~lLlrl~~------------p~~G~I~I 1369 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPRE-----KVGIVGRTGSGKSTLLLTFMRMVE------------VCGGEIRV 1369 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEE
Confidence 4578889887763 348999999999888 8999999999999999 7777766 88898 4
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhhh--c-CCChHHHHHHHhhccCCh
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAANL--Y-GTSQCGRQNGRNYLIFNT 153 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~--y-G~~~~~I~~ile~v~L~~ 153 (166)
||++..-++..++++. +.|+.++..+++..|. + ..+.+++.++++.+++.+
T Consensus 1370 DG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~ 1426 (1560)
T PTZ00243 1370 NGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRE 1426 (1560)
T ss_pred CCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChH
Confidence 9998877788777764 4677788889999994 2 135577888888777653
No 91
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.87 E-value=3.1e-09 Score=84.99 Aligned_cols=47 Identities=19% Similarity=0.056 Sum_probs=37.9
Q ss_pred Eeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~~il~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLSLNVYKGE-----IFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEeeEEEeCCCCceeecceEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 456665553 457889999999888 8999999999999999 7777643
No 92
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.87 E-value=2.2e-09 Score=86.71 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=36.3
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.+.++.+++|+ +++|+||||||||||+ ++.+.-
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 3 VRGLTKRFGGLVALDDVSFSVRPGE-----IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred eeeeEEEECCEEEecCceEEecCCc-----EEEEECCCCCCHHHHHHHHcCCC
Confidence 345555543 457888999998888 8999999999999999 777654
No 93
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.86 E-value=1.5e-09 Score=86.60 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=70.0
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHHHHHHH
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRADMEER 118 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f~~~ 118 (166)
..++.+.++.|+.|| .++|+||||||||||+ +++++.+ |.+||+ .|.+.+-.+.+....+
T Consensus 23 l~IL~~V~L~v~~Ge-----~vaiVG~SGSGKSTLl~vlAGLd~------------~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 23 LSILKGVELVVKRGE-----TVAIVGPSGSGKSTLLAVLAGLDD------------PSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeEeecceEEecCCc-----eEEEEcCCCCcHHhHHHHHhcCCC------------CCCceEEEcCcchhhcCHHHHHHh
Confidence 567778889999999 8999999999999999 9999887 889985 6777777776665443
Q ss_pred --------HHcCCccceeeehhh------hcCC----ChHHHHHHHhhccCCh
Q psy18088 119 --------IAAGEFLEHAEFAAN------LYGT----SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 119 --------~~~~~fle~~~~~gn------~yG~----~~~~I~~ile~v~L~~ 153 (166)
+|+-.+++..+...| .-|- +++..++.++.|+|+.
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~ 138 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGK 138 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccc
Confidence 455556676666666 2342 2344566777788763
No 94
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.86 E-value=3.5e-09 Score=84.09 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=63.5
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCccee
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYH 108 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~ 108 (166)
++++++.+. ..++.+.++.+.+|+ +++|+||||||||||+ ++.+.-. |.+|++ +|.+..
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~G~-----~~~i~G~nGsGKSTLl~~l~Gl~~------------~~~G~i~~~g~~~~ 65 (208)
T cd03268 3 TNDLTKTYGKKRVLDDISLHVKKGE-----IYGFLGPNGAGKTTTMKIILGLIK------------PDSGEITFDGKSYQ 65 (208)
T ss_pred EEEEEEEECCeEeEeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCcC------------CCceEEEECCCccc
Confidence 455665552 457888899998888 8999999999999999 7776543 666653 554321
Q ss_pred ecCHHHHH----HHHHcCCccceeeehhhh------cCCChHHHHHHHhhccCCh
Q psy18088 109 FVTRADME----ERIAAGEFLEHAEFAANL------YGTSQCGRQNGRNYLIFNT 153 (166)
Q Consensus 109 fvs~~~f~----~~~~~~~fle~~~~~gn~------yG~~~~~I~~ile~v~L~~ 153 (166)
-. ..+. ...+...+++..++.+|. ++...+.++++++.+++..
T Consensus 66 ~~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~ 118 (208)
T cd03268 66 KN--IEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD 118 (208)
T ss_pred ch--HHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH
Confidence 11 1111 122333455555666652 2334455777777777754
No 95
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.86 E-value=3.7e-09 Score=95.49 Aligned_cols=105 Identities=10% Similarity=0.045 Sum_probs=75.3
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cC
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VD 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~ 103 (166)
..+++++++.+. ..++.+.++.+++|+ .++|+||||||||||+ ++.+... |.+|+ ++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~-----~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~ 378 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGE-----ALAIIGPSGSGKSTLARLIVGIWP------------PTSGSVRLD 378 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEEC
Confidence 467788887762 357889999998888 8999999999999999 7777654 88887 48
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhhh-cCC---ChHHHHHHHhhccC
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAANL-YGT---SQCGRQNGRNYLIF 151 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~-yG~---~~~~I~~ile~v~L 151 (166)
|.+...++...+.+. +.+..++..+++.+|. ++- +.+++.++++..++
T Consensus 379 g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~ 433 (544)
T TIGR01842 379 GADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGV 433 (544)
T ss_pred CEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhCh
Confidence 877665566665543 3455666677888884 332 34556666665554
No 96
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.86 E-value=4.3e-09 Score=86.73 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=39.7
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ +|.+...
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGE-----VVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667776663 457889999999888 8999999999999999 7777643
No 97
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.85 E-value=4e-09 Score=105.60 Aligned_cols=107 Identities=18% Similarity=0.077 Sum_probs=86.7
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
+-.++++|++.+. ..++.++++.+++|| .++|+|+||||||||+ ++.++.+ |.+|+ +
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~Ge-----kiaIVGrTGsGKSTL~~lL~rl~~------------~~~G~I~I 1345 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGE-----KVGIVGRTGAGKSSLTLGLFRINE------------SAEGEIII 1345 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCcc------------CCCCeEEE
Confidence 4577888887773 358999999999888 8999999999999999 7777776 88898 4
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhhh--cC-CChHHHHHHHhhccCC
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAANL--YG-TSQCGRQNGRNYLIFN 152 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~--yG-~~~~~I~~ile~v~L~ 152 (166)
||+|..-++...++.. +.|+.++..+++..|. +| .+.+++.++++.+.+.
T Consensus 1346 dG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~ 1401 (1522)
T TIGR00957 1346 DGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLK 1401 (1522)
T ss_pred CCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcH
Confidence 9999888888887764 5677888889999994 44 3567788888877764
No 98
>KOG0057|consensus
Probab=98.85 E-value=1.7e-09 Score=97.73 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=80.6
Q ss_pred CceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cC
Q psy18088 29 GITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VD 103 (166)
Q Consensus 29 ~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~ 103 (166)
+..++++|+..+. ..++.+.+|.|.+|| -++|+|+|||||||++ ++-++.+ .+|+ +|
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGe-----kVaIvG~nGsGKSTilr~LlrF~d-------------~sG~I~Id 411 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGE-----KVAIVGSNGSGKSTILRLLLRFFD-------------YSGSILID 411 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCC-----EEEEECCCCCCHHHHHHHHHHHhc-------------cCCcEEEC
Confidence 4577888776664 558999999998888 8999999999999999 5555442 3576 59
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCChHHHHHHHh---hccCC
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTSQCGRQNGRN---YLIFN 152 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~~~~I~~ile---~v~L~ 152 (166)
|++..-++.+.+++. +.|+..+...++.-| .||-+..+-+++.+ ..++.
T Consensus 412 G~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~h 467 (591)
T KOG0057|consen 412 GQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLH 467 (591)
T ss_pred CeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcH
Confidence 999888899998886 467788888888888 89987654444444 44544
No 99
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=9.3e-10 Score=87.52 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=36.7
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 3 ~~~l~~~~~~~~~l~~v~~~i~~G~-----~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 3 VENVTKRFGRVTALDDISFSVEKGE-----IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 456666553 456778899998888 8999999999999999 777754
No 100
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.85 E-value=1.7e-09 Score=86.30 Aligned_cols=48 Identities=21% Similarity=0.142 Sum_probs=38.4
Q ss_pred eEEeeecceee-e----cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-I----SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-~----~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+.++++++.+. . .++.+.++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGE-----VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCc
Confidence 34566776664 2 57888899998888 8999999999999999 777764
No 101
>PRK10908 cell division protein FtsE; Provisional
Probab=98.85 E-value=1.9e-09 Score=86.50 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=39.2
Q ss_pred eEEeeeccee-e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRT-C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+ . ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGE-----MAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 4566777766 3 457888999998888 8999999999999999 7777543
No 102
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.85 E-value=1.2e-09 Score=87.73 Aligned_cols=46 Identities=17% Similarity=0.107 Sum_probs=35.7
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.+.++.+++|+ +++|+||||+|||||+ ++.+..
T Consensus 3 l~~v~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 3 TKNLSKRFGKQTAVNNISLTVPKNS-----VYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 445555442 456788899998888 8999999999999999 776643
No 103
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=1.2e-09 Score=90.18 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=38.8
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGE-----LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 45667776653 457888999998888 8999999999999999 777654
No 104
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.84 E-value=1e-09 Score=87.82 Aligned_cols=48 Identities=19% Similarity=0.096 Sum_probs=38.1
Q ss_pred EEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 32 VRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 32 ~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~~v~~~~~~~~~~~~~l~~isl~i~~G~-----~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 3 KCENLGKRYQEGKLDTRVLKGVSLSIGKGE-----IVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEeeeEEccCCCcceEeEeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 4556666653 357888999998888 8999999999999999 7777543
No 105
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=1e-09 Score=88.86 Aligned_cols=50 Identities=20% Similarity=0.086 Sum_probs=40.8
Q ss_pred ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGE-----MMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 466778887763 357888999999888 8999999999999999 7777543
No 106
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.84 E-value=3e-09 Score=93.76 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=68.6
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.+.-. |.+|++ +|.
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Ge-----iv~liGpNGaGKSTLLk~LaGll~------------p~sG~I~l~G~ 65 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGS-----LVGLVGPNGAGKTTLLRAINGTLT------------PTAGTVLVAGD 65 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCC-----EEEEECCCCchHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence 456677777664 567889999999888 8999999999999999 7777543 667763 665
Q ss_pred ceeecCHHHHHH----HHHcCCccceeeehhh-hcCC----------C---hHHHHHHHhhccCChhH
Q psy18088 106 AYHFVTRADMEE----RIAAGEFLEHAEFAAN-LYGT----------S---QCGRQNGRNYLIFNTLA 155 (166)
Q Consensus 106 ~y~fvs~~~f~~----~~~~~~fle~~~~~gn-~yG~----------~---~~~I~~ile~v~L~~~~ 155 (166)
+....+..++.+ ..+...+....++.+| .+|. + .+.++++++.+++.+..
T Consensus 66 ~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~ 133 (402)
T PRK09536 66 DVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA 133 (402)
T ss_pred EcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh
Confidence 543333333322 2333333333444444 1221 1 23467777788876443
No 107
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.84 E-value=9.2e-10 Score=87.72 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=36.8
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.++|+.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGE-----FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 445665553 457889999999888 8999999999999999 777654
No 108
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.84 E-value=1.4e-09 Score=91.72 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=41.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGE-----CFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 456778887774 457889999999888 8999999999999999 7777543
No 109
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.84 E-value=3.4e-09 Score=89.44 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=68.9
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA 106 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~ 106 (166)
.+++++++.+. ..++.++++.+++|+ +++|+||+|+|||||+ ++.+... |..|++ +|.+
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge-----i~~l~G~NGaGKTTLl~~l~Gl~~------------~~~G~i~i~g~~ 65 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGR-----IVGFLGPNGAGKSTTMKIITGYLP------------PDSGSVQVCGED 65 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCe-----EEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEE
Confidence 45667777763 567889999999888 8999999999999999 7777543 666763 5654
Q ss_pred eeecCHHHH----HHHHHcCCccceeeehhh------hcCCCh----HHHHHHHhhccCChhH
Q psy18088 107 YHFVTRADM----EERIAAGEFLEHAEFAAN------LYGTSQ----CGRQNGRNYLIFNTLA 155 (166)
Q Consensus 107 y~fvs~~~f----~~~~~~~~fle~~~~~gn------~yG~~~----~~I~~ile~v~L~~~~ 155 (166)
..- ..... ..+.+...+.++.++.+| .||.+. +.++++++.++|.+..
T Consensus 66 ~~~-~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 127 (301)
T TIGR03522 66 VLQ-NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ 127 (301)
T ss_pred ccc-ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh
Confidence 321 11111 122344445555555555 356552 4566777778877543
No 110
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.84 E-value=4.1e-09 Score=85.49 Aligned_cols=49 Identities=14% Similarity=0.020 Sum_probs=39.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||+|||||+ ++.+.-
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGE-----LRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 345667776663 457888999999888 8999999999999999 777653
No 111
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.83 E-value=1.3e-09 Score=86.10 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=35.5
Q ss_pred eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+....+-++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 2 l~~~~l~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFDLSITFLPSA-----ITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred eEEEEeeEEECCcEEEEEEEEEcCCc-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 34566666664222223778888777 8999999999999999 7777543
No 112
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=7.5e-10 Score=88.76 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=36.6
Q ss_pred Eeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~~~~il~~vs~~i~~G~-----~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDISLSVEEGE-----FVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EEEEEEEcCCCCcceEEEeceeEEEeCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 345554442 357788999998888 8999999999999999 7777643
No 113
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.83 E-value=2.7e-09 Score=84.68 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=35.6
Q ss_pred eecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 35 LLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 35 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 4 ~l~~~~~~~~~~l~~v~~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 4 NISFSYKKGTEILDDLSLDLYAGE-----IIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred cEEEEeCCcCceeeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 4444442 457888899998888 8999999999999999 7777543
No 114
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.82 E-value=1.1e-09 Score=90.81 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=65.0
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
.++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ +|.+... |..|++ +|.
T Consensus 12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge-----~~~I~G~NGsGKSTLlk~l~Gl~~------------p~~G~i~~~g~ 74 (257)
T PRK11247 12 PLLLNAVSKRYGERTVLNQLDLHIPAGQ-----FVAVVGRSGCGKSTLLRLLAGLET------------PSAGELLAGTA 74 (257)
T ss_pred cEEEEEEEEEECCcceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEECCE
Confidence 567788887774 457888999999888 8999999999999999 7777543 555653 332
Q ss_pred ceeecCHHHHHHHHHcCCccceeeehhhh-cCC---ChHHHHHHHhhccCCh
Q psy18088 106 AYHFVTRADMEERIAAGEFLEHAEFAANL-YGT---SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~fvs~~~f~~~~~~~~fle~~~~~gn~-yG~---~~~~I~~ile~v~L~~ 153 (166)
+.... ...+....+...+.++.++.+|. ++. ....+.++++.+++.+
T Consensus 75 ~~~~~-~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~ 125 (257)
T PRK11247 75 PLAEA-REDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD 125 (257)
T ss_pred EHHHh-hCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChh
Confidence 21000 00011112333344555666662 332 1345667777777754
No 115
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.82 E-value=1.2e-09 Score=95.08 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=65.3
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHH----
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADM---- 115 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f---- 115 (166)
.++.++++.+++|| +++|+||||||||||+ ++.++.. |..|+ ++|++....+..++
T Consensus 7 ~~l~~vs~~i~~Ge-----i~~l~G~sGsGKSTLLr~L~Gl~~------------p~~G~I~i~G~~i~~~~~~~~~~~r 69 (363)
T TIGR01186 7 KGVNDADLAIAKGE-----IFVIMGLSGSGKSTTVRMLNRLIE------------PTAGQIFIDGENIMKQSPVELREVR 69 (363)
T ss_pred eeEEeeEEEEcCCC-----EEEEECCCCChHHHHHHHHhCCCC------------CCceEEEECCEECCcCCHHHHHHHH
Confidence 35677888888888 8999999999999999 8887664 77887 47776544444433
Q ss_pred ----HHHHHcCCccceeeehhh-h-----cCCCh----HHHHHHHhhccCCh
Q psy18088 116 ----EERIAAGEFLEHAEFAAN-L-----YGTSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 116 ----~~~~~~~~fle~~~~~gn-~-----yG~~~----~~I~~ile~v~L~~ 153 (166)
...+|+..++++.++.+| . +|.+. +.+.++++.++|..
T Consensus 70 r~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~ 121 (363)
T TIGR01186 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE 121 (363)
T ss_pred hCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch
Confidence 123456667777788777 2 34443 34556667777753
No 116
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.82 E-value=5.6e-09 Score=84.69 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=75.5
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC-
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG- 104 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G- 104 (166)
.+..++++..|. ..++.++||.|+.|| .-+|+||+|+||||++ +|.+.-. |..|++ +|
T Consensus 5 iL~~~~vsVsF~GF~Aln~ls~~v~~Ge-----lr~lIGpNGAGKTT~mD~ItGKtr------------p~~G~v~f~g~ 67 (249)
T COG4674 5 ILYLDGVSVSFGGFKALNDLSFSVDPGE-----LRVLIGPNGAGKTTLMDVITGKTR------------PQEGEVLFDGD 67 (249)
T ss_pred eEEEeceEEEEcceeeeeeeEEEecCCe-----EEEEECCCCCCceeeeeeecccCC------------CCcceEEEcCc
Confidence 577888898885 888999999999999 7999999999999999 7777543 666763 44
Q ss_pred cceeecCHHHHH-----HHHHcCCccceeeehhhh------------------cCCChHHHHHHHhhccCChh
Q psy18088 105 KAYHFVTRADME-----ERIAAGEFLEHAEFAANL------------------YGTSQCGRQNGRNYLIFNTL 154 (166)
Q Consensus 105 ~~y~fvs~~~f~-----~~~~~~~fle~~~~~gn~------------------yG~~~~~I~~ile~v~L~~~ 154 (166)
.+..-.+..++. +.+|....++..++.+|+ -+..+++|+++++.++|.+.
T Consensus 68 ~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~ 140 (249)
T COG4674 68 TDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE 140 (249)
T ss_pred hhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh
Confidence 343333333333 335666666666655541 12234678888988888754
No 117
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.82 E-value=1.5e-09 Score=88.23 Aligned_cols=48 Identities=19% Similarity=0.114 Sum_probs=38.9
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGE-----LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 45667776653 457889999999888 8999999999999999 777654
No 118
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.82 E-value=1.2e-09 Score=87.85 Aligned_cols=46 Identities=20% Similarity=0.094 Sum_probs=36.4
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGE-----ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhhc
Confidence 456666553 357788899998888 8999999999999999 666643
No 119
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.82 E-value=2.4e-09 Score=84.62 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=36.7
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 3 ARNLACSRGERMLFEGLSFTLNAGE-----ALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred EEEEEEEECCEEEEeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 445555543 456788999998888 8999999999999999 7777543
No 120
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.82 E-value=1.3e-09 Score=89.12 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=38.6
Q ss_pred EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 2 RFSDVTKRFGILTVLDGLNFSVAAGE-----KVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred EEEEEEEEeCCeeEEeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3556666663 457788999999888 8999999999999999 7777653
No 121
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=3.9e-09 Score=88.14 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=40.9
Q ss_pred ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++.++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGE-----WLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 466778887763 237889999999888 8999999999999999 7777654
No 122
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.81 E-value=1.9e-09 Score=87.52 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=39.0
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGE-----VVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667776653 457888999998888 8999999999999999 7777543
No 123
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=2.9e-09 Score=85.38 Aligned_cols=47 Identities=21% Similarity=0.102 Sum_probs=37.8
Q ss_pred EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 2 ~~~~~~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 2 EVENLVKKYGDFEAVRGVSFRVRRGE-----IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEEEEEECCEEeeeceeEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 3556666653 457888999999888 8999999999999999 777754
No 124
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.81 E-value=3.3e-09 Score=85.99 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=38.0
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGE-----FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCc
Confidence 34566666553 457788999998888 8999999999999999 777754
No 125
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.81 E-value=6.8e-09 Score=89.12 Aligned_cols=109 Identities=13% Similarity=0.033 Sum_probs=68.3
Q ss_pred ceEEeeecceee--------------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeec
Q psy18088 30 ITVRILLNYRTC--------------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTT 94 (166)
Q Consensus 30 ~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TT 94 (166)
+++++++++.+. ..++.++|+.|++|| +++|+|+||||||||+ +|.++..
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~lvG~sGsGKSTLlk~i~Gl~~---------- 72 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGE-----TLGVVGESGCGKSTFARAIIGLVK---------- 72 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCC-----EEEEECCCCCCHHHHHHHHHCCCC----------
Confidence 567778877663 357789999999888 8999999999999999 6666553
Q ss_pred CCCCCCcc--CCcceeecCHHHHHHH-------HHcC--Cccceeeehhhh------c--CCChH----HHHHHHhhccC
Q psy18088 95 RGPRPGEV--DGKAYHFVTRADMEER-------IAAG--EFLEHAEFAANL------Y--GTSQC----GRQNGRNYLIF 151 (166)
Q Consensus 95 R~p~~ge~--~G~~y~fvs~~~f~~~-------~~~~--~fle~~~~~gn~------y--G~~~~----~I~~ile~v~L 151 (166)
|.+|++ +|.+..-.+..++... +|+. .+.+..++.+|. + +.+.+ .++++++.+++
T Consensus 73 --p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl 150 (331)
T PRK15079 73 --ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGL 150 (331)
T ss_pred --CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC
Confidence 666763 6665433333332221 2221 244455555552 2 23432 34556667787
Q ss_pred ChhH
Q psy18088 152 NTLA 155 (166)
Q Consensus 152 ~~~~ 155 (166)
.+..
T Consensus 151 ~~~~ 154 (331)
T PRK15079 151 LPNL 154 (331)
T ss_pred ChHH
Confidence 5443
No 126
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=7.4e-09 Score=84.23 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=61.9
Q ss_pred Eeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce
Q psy18088 33 RILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY 107 (166)
Q Consensus 33 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y 107 (166)
++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+... |..|++ +|.+.
T Consensus 3 ~~~l~~~~~~~~~~l~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~ 65 (242)
T cd03295 3 FENVTKRYGGGKKAVNNLNLEIAKGE-----FLVLIGPSGSGKTTTMKMINRLIE------------PTSGEIFIDGEDI 65 (242)
T ss_pred EEEEEEEeCCcceEeeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCeEc
Confidence 456665553 357788899998888 8999999999999999 7776543 556653 55432
Q ss_pred eecCHHHHH----HHHHcCCccceeeehhhh------cCCCh----HHHHHHHhhccCCh
Q psy18088 108 HFVTRADME----ERIAAGEFLEHAEFAANL------YGTSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 108 ~fvs~~~f~----~~~~~~~fle~~~~~gn~------yG~~~----~~I~~ile~v~L~~ 153 (166)
...+...+. ...+...+....++.+|. .+.+. +.+.++++.+++.+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 125 (242)
T cd03295 66 REQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP 125 (242)
T ss_pred CcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc
Confidence 211222211 122333444445555552 12221 34566677777764
No 127
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.80 E-value=8.5e-09 Score=85.22 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=41.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
.+.++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGH-----FTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred EEEEEEEEEEECCEEEeeecceEECCCC-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence 566778887774 457889999999888 8999999999999999 7777543
No 128
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.80 E-value=5.7e-09 Score=83.11 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=39.5
Q ss_pred eEEeeeccee-e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRT-C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+ . ..++.++|+.+++|+ +++|+||||||||||+ ++.+...
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~-----~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGE-----FLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 4566777665 2 467889999999888 8999999999999999 7777643
No 129
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.80 E-value=3.9e-09 Score=83.84 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=63.4
Q ss_pred EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce
Q psy18088 32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY 107 (166)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y 107 (166)
+++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+... |.+|++ +|.+.
T Consensus 2 ~i~~l~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~------------~~~G~i~~~g~~~ 64 (201)
T cd03231 2 EADELTCERDGRALFSGLSFTLAAGE-----ALQVTGPNGSGKTTLLRILAGLSP------------PLAGRVLLNGGPL 64 (201)
T ss_pred EEEEEEEEeCCceeeccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEec
Confidence 3456666653 456788999999888 8999999999999999 7777543 666653 45442
Q ss_pred eecCHHHHHH----HHHcCCccceeeehhhh-cCC---ChHHHHHHHhhccCCh
Q psy18088 108 HFVTRADMEE----RIAAGEFLEHAEFAANL-YGT---SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 108 ~fvs~~~f~~----~~~~~~fle~~~~~gn~-yG~---~~~~I~~ile~v~L~~ 153 (166)
...+ ..+.+ ..+...+.+..++.+|. +.. ..+.++++++.+++.+
T Consensus 65 ~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~ 117 (201)
T cd03231 65 DFQR-DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNG 117 (201)
T ss_pred cccc-HHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChh
Confidence 2111 11211 12233344445565652 211 2345677777777763
No 130
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.79 E-value=4.1e-09 Score=87.75 Aligned_cols=50 Identities=20% Similarity=0.102 Sum_probs=41.3
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGS-----KTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC
Confidence 466778887763 458889999999888 8999999999999999 7777543
No 131
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.79 E-value=8.8e-09 Score=83.93 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=39.3
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+.++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGGA-----IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 45677777763 457788999998888 8999999999999999 777654
No 132
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.79 E-value=1e-08 Score=85.60 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=39.2
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ +|.+..
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGR-----VTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 45677777664 457889999998888 8999999999999999 777654
No 133
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.78 E-value=1.8e-09 Score=85.91 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=36.8
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGE-----FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 456665553 457888999998888 8999999999999999 777653
No 134
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.78 E-value=1.5e-09 Score=95.64 Aligned_cols=96 Identities=15% Similarity=0.276 Sum_probs=62.8
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHHHHH--
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRADME-- 116 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f~-- 116 (166)
..++.++++.+++|+ +++|+||||||||||+ +|.++.. |..|++ +|.+..-.+...+.
T Consensus 41 ~~~L~~isl~i~~Ge-----i~~LvG~NGsGKSTLLr~I~Gl~~------------p~sG~I~i~G~~i~~~~~~~l~~~ 103 (400)
T PRK10070 41 SLGVKDASLAIEEGE-----IFVIMGLSGSGKSTMVRLLNRLIE------------PTRGQVLIDGVDIAKISDAELREV 103 (400)
T ss_pred eEEEEeEEEEEcCCC-----EEEEECCCCchHHHHHHHHHcCCC------------CCCCEEEECCEECCcCCHHHHHHH
Confidence 345778899999888 8999999999999999 8877654 777863 66654333332221
Q ss_pred ------HHHHcCCccceeeehhhh-c-----CCCh----HHHHHHHhhccCChh
Q psy18088 117 ------ERIAAGEFLEHAEFAANL-Y-----GTSQ----CGRQNGRNYLIFNTL 154 (166)
Q Consensus 117 ------~~~~~~~fle~~~~~gn~-y-----G~~~----~~I~~ile~v~L~~~ 154 (166)
..+|...++++.++.+|. + |.+. +.+.++++.++|.+.
T Consensus 104 ~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~ 157 (400)
T PRK10070 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENY 157 (400)
T ss_pred HhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh
Confidence 223444556666777662 2 3332 335566777777643
No 135
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.78 E-value=8.4e-09 Score=83.79 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=72.2
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKA 106 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~ 106 (166)
.++.+|+|.+. ..++++.|..+.+|. +.+|+||+|+|||||+ +++++-. +.+|+ ++|.+
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~-----iTs~IGPNGAGKSTLLS~~sRL~~------------~d~G~i~i~g~~ 64 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGG-----ITSIIGPNGAGKSTLLSMMSRLLK------------KDSGEITIDGLE 64 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCc-----eeEEECCCCccHHHHHHHHHHhcc------------ccCceEEEeeee
Confidence 45667788885 556777776665555 8999999999999999 8888765 67777 47766
Q ss_pred eeecCHHHHHH----HHHcCCccceeeehhh--------hcCCC----hHHHHHHHhhccCChhHHhhC
Q psy18088 107 YHFVTRADMEE----RIAAGEFLEHAEFAAN--------LYGTS----QCGRQNGRNYLIFNTLAAKCL 159 (166)
Q Consensus 107 y~fvs~~~f~~----~~~~~~fle~~~~~gn--------~yG~~----~~~I~~ile~v~L~~~~~~~l 159 (166)
..-.+..+..+ +.|.+.+-.-.++.+- .-|-. ..-|.++++++.|.+..-+.|
T Consensus 65 ~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL 133 (252)
T COG4604 65 LTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL 133 (252)
T ss_pred cccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH
Confidence 54444444433 3455555555555432 12322 234677778888775544444
No 136
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.78 E-value=2e-09 Score=92.91 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=61.6
Q ss_pred eecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeec-
Q psy18088 35 LLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFV- 110 (166)
Q Consensus 35 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fv- 110 (166)
++++.+..... ++++.+++|+ +++|+||||||||||+ +|.+... |.+|++ +|.+....
T Consensus 5 ~l~k~~~~~~~-~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~iaGl~~------------p~~G~I~~~g~~~~~~~ 66 (352)
T PRK11144 5 NFKQQLGDLCL-TVNLTLPAQG-----ITAIFGRSGAGKTSLINAISGLTR------------PQKGRIVLNGRVLFDAE 66 (352)
T ss_pred EEEEEeCCEEE-EEEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccccc
Confidence 55555532222 6788888888 8999999999999999 7777643 555543 44332110
Q ss_pred -----C--HHHHHHHHHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCChh
Q psy18088 111 -----T--RADMEERIAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFNTL 154 (166)
Q Consensus 111 -----s--~~~f~~~~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~~~ 154 (166)
. ...+...++...+.++.++.+| .||.. .+.++++++.++|.+.
T Consensus 67 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~ 121 (352)
T PRK11144 67 KGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPL 121 (352)
T ss_pred cccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchh
Confidence 0 0011122344456666777777 44532 3456777778887643
No 137
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=3.5e-09 Score=85.98 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=39.8
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGE-----IVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 355667776653 457788999999888 8999999999999999 7777643
No 138
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.77 E-value=9.9e-09 Score=84.24 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=38.2
Q ss_pred EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
.++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ +|.+...
T Consensus 3 ~~~~l~~~~~~~~il~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 3 RLSRVSWSAGGRLIVDGVDVTAPPGS-----LTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred eEEeEEEEECCEEEEeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence 3456666553 457889999999888 8999999999999999 7777643
No 139
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=4.3e-09 Score=85.09 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=36.5
Q ss_pred eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+.... .++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 2 l~~~~l~~~~~~~~-~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 2 LKLTDITWLYHHLP-MRFDLTVERGE-----RVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred eEEEEEEEEECCcc-ceeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667777764222 37788888777 8999999999999999 7777543
No 140
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.76 E-value=7.8e-09 Score=86.37 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=41.2
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+...
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGE-----WVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC
Confidence 567788887763 348889999999888 8999999999999999 7777543
No 141
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=5e-09 Score=83.35 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=33.9
Q ss_pred EeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+..... +.++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~-~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 3 LDKIRFSYGEQPM-HFDLTFAQGE-----ITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred EEeEEEEeCCEec-ceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 4456655532222 7788888888 8999999999999999 7776543
No 142
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.75 E-value=5.9e-09 Score=84.69 Aligned_cols=49 Identities=16% Similarity=-0.014 Sum_probs=39.7
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+.++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGE-----TLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667776664 467889999999888 8999999999999999 7777653
No 143
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.75 E-value=1.8e-09 Score=85.41 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=32.4
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 11 ~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 11 KIILDDLNLTIEKGK-----MYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEEEeceEEEEeCCc-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 357788999998888 8999999999999999 7777543
No 144
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.75 E-value=2.8e-09 Score=95.51 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=41.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+.-
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGR-----VMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCe-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 567778887774 457889999998888 8999999999999999 777754
No 145
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.75 E-value=6.4e-09 Score=93.52 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=67.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+... |..|++ +|.
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~liG~NGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~ 73 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGE-----VHALLGGNGAGKSTLMKIIAGIVP------------PDSGTLEIGGN 73 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCE
Confidence 577888888774 457889999998888 8999999999999999 7777543 666663 554
Q ss_pred ceeecCHHHHH-----HHHHcCCccceeeehhh-hcCCC-----hHHHHHHHhhccCC
Q psy18088 106 AYHFVTRADME-----ERIAAGEFLEHAEFAAN-LYGTS-----QCGRQNGRNYLIFN 152 (166)
Q Consensus 106 ~y~fvs~~~f~-----~~~~~~~fle~~~~~gn-~yG~~-----~~~I~~ile~v~L~ 152 (166)
+....+..... ...+...+..+.++.+| .++.. .+.++++++.+++.
T Consensus 74 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~ 131 (510)
T PRK15439 74 PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ 131 (510)
T ss_pred ECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC
Confidence 43212222111 12233344555566666 23321 23456666677765
No 146
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.75 E-value=3.8e-09 Score=89.11 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=60.2
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHHHH----
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRADM---- 115 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f---- 115 (166)
.++.++++.+++|+ +++|+||||||||||+ ++.+.-. |.+|++ +|.+... ....+
T Consensus 7 ~~l~~vs~~i~~Ge-----~~~l~G~NGaGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~-~~~~~~~~i 68 (302)
T TIGR01188 7 KAVDGVNFKVREGE-----VFGFLGPNGAGKTTTIRMLTTLLR------------PTSGTARVAGYDVVR-EPRKVRRSI 68 (302)
T ss_pred eEEeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC------------CCceEEEECCEEccc-CHHHHHhhc
Confidence 46778899998888 8999999999999999 7777543 777763 6654321 11122
Q ss_pred HHHHHcCCccceeeehhh------hcCCCh----HHHHHHHhhccCChh
Q psy18088 116 EERIAAGEFLEHAEFAAN------LYGTSQ----CGRQNGRNYLIFNTL 154 (166)
Q Consensus 116 ~~~~~~~~fle~~~~~gn------~yG~~~----~~I~~ile~v~L~~~ 154 (166)
..+.+...+.++.++.+| .+|.+. +.++++++.++|.+.
T Consensus 69 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 117 (302)
T TIGR01188 69 GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEA 117 (302)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH
Confidence 123344445555566555 245543 235667777777643
No 147
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.74 E-value=3.5e-09 Score=84.63 Aligned_cols=47 Identities=17% Similarity=0.022 Sum_probs=36.9
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.+.++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGE-----IVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCe-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 456665543 357788899998888 8999999999999999 7776543
No 148
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=1.5e-08 Score=83.07 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=38.6
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.+.-
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGK-----ITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCc-----EEEEECCCCCCHHHHHHHHhCCc
Confidence 45666666553 457888999999888 8999999999999999 777754
No 149
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.73 E-value=5.3e-09 Score=84.27 Aligned_cols=47 Identities=19% Similarity=0.063 Sum_probs=37.8
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGE-----VTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 456666553 457888999999888 8999999999999999 7777653
No 150
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.72 E-value=1.5e-08 Score=84.70 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=41.2
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge-----~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGS-----WTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCC-----EEEEECCCCCcHHHHHHHHhccc
Confidence 3577888888773 347889999998888 8999999999999999 777654
No 151
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.72 E-value=9.7e-09 Score=84.55 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=40.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ +|.+..
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGE-----MVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCc-----EEEEECCCCCCHHHHHHHHhccC
Confidence 456777777664 567889999999888 8999999999999999 777653
No 152
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.7e-08 Score=82.33 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=39.0
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 4 l~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNT-----ITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred EEEEeeEEEECCeeeeecceeEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 56677777664 457888999999888 8999999999999999 77765
No 153
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.71 E-value=1.5e-08 Score=84.88 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=45.0
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHH
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRA 113 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~ 113 (166)
+.+++++||.+.+|| +++|+|.||||||||. ++.++.. |..|++ +|.+....+.+
T Consensus 26 v~avd~Vsf~i~~ge-----~~glVGESG~GKSTlgr~i~~L~~------------pt~G~i~f~g~~i~~~~~~ 83 (268)
T COG4608 26 VKAVDGVSFSIKEGE-----TLGLVGESGCGKSTLGRLILGLEE------------PTSGEILFEGKDITKLSKE 83 (268)
T ss_pred eEEecceeEEEcCCC-----EEEEEecCCCCHHHHHHHHHcCcC------------CCCceEEEcCcchhhcchh
Confidence 467888999999999 8999999999999999 7777665 889985 77776555543
No 154
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.70 E-value=5e-09 Score=83.69 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=34.3
Q ss_pred EeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ....+.++.+++|+ +++|+||||||||||+ ++.+.-.
T Consensus 3 ~~~l~~~~~-~~~~~~s~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 3 LDKVRYEYE-HLPMEFDLNVADGE-----IVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred EEeeeEEeC-CcceeeEEEEeCCc-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 456665554 23457788888777 8999999999999999 7776543
No 155
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.70 E-value=1.2e-08 Score=82.11 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=40.8
Q ss_pred ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGE-----TIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCC-----EEEEECCCCCCHHHHHHHHHcCCC
Confidence 567778887664 247889999998888 8999999999999999 7777643
No 156
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.70 E-value=1.3e-08 Score=80.84 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=37.5
Q ss_pred Eeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~~l~~~sl~i~~G~-----~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 3 FINVTKTYPNGTAALDGINISISAGE-----FVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EEEEEEEeCCCceeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 456666653 357888999998888 8999999999999999 7777643
No 157
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.70 E-value=1.1e-08 Score=81.49 Aligned_cols=46 Identities=20% Similarity=0.057 Sum_probs=35.2
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+++| .++|+||||||||||+ ++.+...
T Consensus 3 ~~~~~~~~~~~~~l~~vs~~i~~g------~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 3 LENLTKRYGKKRALDGVSLTLGPG------MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred EEEEEEEECCEEEEcceeEEEcCC------cEEEECCCCCCHHHHHHHHhCCCC
Confidence 456666653 45778888888753 5999999999999999 7777543
No 158
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.70 E-value=1.7e-08 Score=83.37 Aligned_cols=49 Identities=12% Similarity=0.007 Sum_probs=39.5
Q ss_pred eEEeeecceee----------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC----------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGE-----TVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667776652 457889999999888 8999999999999999 7777643
No 159
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=4.9e-09 Score=84.92 Aligned_cols=50 Identities=18% Similarity=0.038 Sum_probs=41.3
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGE-----IVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence 567788888764 457888999999888 8999999999999999 7776543
No 160
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.69 E-value=8.3e-09 Score=92.55 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=41.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGE-----IHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHcCCcC
Confidence 567778887774 457889999999888 8999999999999999 7777543
No 161
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.69 E-value=2.3e-08 Score=81.95 Aligned_cols=91 Identities=21% Similarity=0.162 Sum_probs=56.3
Q ss_pred eeccee-eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceee-
Q psy18088 35 LLNYRT-CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHF- 109 (166)
Q Consensus 35 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~f- 109 (166)
+++.-+ ...++.++++.+.+.+ +.+|+|||||||||++ .+++.-+.+.. + .-+|++ +|++.+-
T Consensus 12 ~l~~yYg~~~aL~~i~l~i~~~~-----VTAlIGPSGcGKST~LR~lNRmndl~~~-~------r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 12 DLNLYYGDKHALKDINLDIPKNK-----VTALIGPSGCGKSTLLRCLNRMNDLIPG-A------RVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEEECchhhhccCceeccCCc-----eEEEECCCCcCHHHHHHHHHhhcccCcC-c------eEEEEEEECCeeccCC
Confidence 444333 3678888888887666 8999999999999999 66654431110 1 113553 6665432
Q ss_pred -cCHHHHHH----HHHcCCccceeeehhh-hcCCC
Q psy18088 110 -VTRADMEE----RIAAGEFLEHAEFAAN-LYGTS 138 (166)
Q Consensus 110 -vs~~~f~~----~~~~~~fle~~~~~gn-~yG~~ 138 (166)
++..++++ .+|+..-++ ..+.+| .||..
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r 113 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLR 113 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHH
Confidence 34444444 356655555 667777 67753
No 162
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2e-08 Score=82.74 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=72.7
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG 104 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G 104 (166)
++++.++.++-. ...+...++.|+.|| +.+|+||+|||||||. .|.++|+ |. +..|++ +|
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GE-----vhaiMGPNGsGKSTLa~~i~G~p~-Y~---------Vt~G~I~~~G 67 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGE-----VHAIMGPNGSGKSTLAYTIMGHPK-YE---------VTEGEILFDG 67 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC-ce---------EecceEEECC
Confidence 456667666654 478999999999999 8999999999999999 8888884 11 445764 78
Q ss_pred cceeecCHHHHHHHHHcCCccceeee--------------hhh-hcCC------ChHHHHHHHhhccCChhHHhh
Q psy18088 105 KAYHFVTRADMEERIAAGEFLEHAEF--------------AAN-LYGT------SQCGRQNGRNYLIFNTLAAKC 158 (166)
Q Consensus 105 ~~y~fvs~~~f~~~~~~~~fle~~~~--------------~gn-~yG~------~~~~I~~ile~v~L~~~~~~~ 158 (166)
++....+.++-.+ .|-|+.|-.- ..| ..+. -...+++.++.+++++..+++
T Consensus 68 edI~~l~~~ERAr---~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R 139 (251)
T COG0396 68 EDILELSPDERAR---AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER 139 (251)
T ss_pred cccccCCHhHHHh---cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc
Confidence 7765555554433 3555555321 111 1111 124566667778888755544
No 163
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.68 E-value=3.3e-08 Score=79.05 Aligned_cols=49 Identities=20% Similarity=0.091 Sum_probs=39.3
Q ss_pred eEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGE-----KVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCC-----EEEEECCCCCCHHHHHHHHHcCCC
Confidence 45667776653 357889999999888 8999999999999999 7777543
No 164
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.68 E-value=1.4e-08 Score=81.27 Aligned_cols=49 Identities=16% Similarity=0.028 Sum_probs=38.9
Q ss_pred eEEeeecceee-e----cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC-I----SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~-~----~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+. . .++.+.++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGE-----TLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 34567776653 2 57889999999888 8999999999999999 7777543
No 165
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.68 E-value=2.9e-08 Score=82.71 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=40.7
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+...
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNS-----RIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 456677877763 347889999999888 8999999999999999 7777643
No 166
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.68 E-value=1.4e-08 Score=81.93 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=41.4
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++.++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGE-----FKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCCC-----EEEEECCCCCCHHHHHHHHhccc
Confidence 577888888774 457889999999888 8999999999999999 777754
No 167
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.68 E-value=2.2e-08 Score=83.94 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=65.8
Q ss_pred eEEeeeccee---eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088 31 TVRILLNYRT---CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG 104 (166)
Q Consensus 31 ~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G 104 (166)
++++++++.+ ...++.++++.+++|+ +++|+||||+|||||+ ++.+.. +.+|+ ++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge-----~~~IvG~nGsGKSTLl~~L~gl~-------------~~~G~I~i~g 64 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQ-----RVGLLGRTGSGKSTLLSAFLRLL-------------NTEGDIQIDG 64 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhhhc-------------CCCcEEEECC
Confidence 4567777776 2457889999999888 8999999999999999 776654 12354 355
Q ss_pred cceeecCHHHHHH----HHHcCCccceeeehhhh--cC-CChHHHHHHHhhccCChh
Q psy18088 105 KAYHFVTRADMEE----RIAAGEFLEHAEFAANL--YG-TSQCGRQNGRNYLIFNTL 154 (166)
Q Consensus 105 ~~y~fvs~~~f~~----~~~~~~fle~~~~~gn~--yG-~~~~~I~~ile~v~L~~~ 154 (166)
++..-++...... ..+...+++ +++.+|. ++ ...+.+.++++.++|.+.
T Consensus 65 ~~i~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~ 120 (275)
T cd03289 65 VSWNSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSV 120 (275)
T ss_pred EEhhhCCHHHHhhhEEEECCCcccch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHH
Confidence 4432222222222 123333333 4666664 33 345667777777777644
No 168
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.67 E-value=1.4e-08 Score=80.75 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=35.2
Q ss_pred eecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 35 LLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 35 ~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 4 ~l~~~~~~~~~~il~~vs~~i~~G~-----~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 4 NLSFSYPDGARPALDDISLTIKKGE-----FVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred eEEEecCCCCeeeecceEEEEcCCc-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 4444442 357788899998888 8999999999999999 7777543
No 169
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.67 E-value=2.2e-08 Score=100.20 Aligned_cols=107 Identities=19% Similarity=0.149 Sum_probs=82.9
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
+-.++++|++.+. ..++.++++.+++|+ .|+|+|+||||||||+ ++.++. +.+|+ +
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~Ge-----kvaIvGrSGsGKSTLl~lL~rl~-------------~~~G~I~I 1277 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQ-----RVGLLGRTGSGKSTLLSALLRLL-------------STEGEIQI 1277 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCC-----EEEEECCCCCCHHHHHHHHhhhc-------------CCCcEEEE
Confidence 4577888887773 468899999999888 8999999999999999 666654 23576 5
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhhhc--C-CChHHHHHHHhhccCCh
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAANLY--G-TSQCGRQNGRNYLIFNT 153 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn~y--G-~~~~~I~~ile~v~L~~ 153 (166)
||++..-++...+++. +.|+.++..+++..|.- + .+.+++.++++.+.|.+
T Consensus 1278 dG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~ 1334 (1490)
T TIGR01271 1278 DGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKS 1334 (1490)
T ss_pred CCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHH
Confidence 9998877787777663 56778888899999952 2 25577888888777643
No 170
>KOG0708|consensus
Probab=98.67 E-value=8.3e-09 Score=89.26 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=87.2
Q ss_pred CCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccce
Q psy18088 50 SGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEH 127 (166)
Q Consensus 50 ~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~ 127 (166)
..|++.++...|+|+|+||- |.-|+ |+..+|++|+.++++|||+. .+++++.++.+.|+++
T Consensus 177 ~~V~~~~~~~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~~k~~~fI~~ 239 (359)
T KOG0708|consen 177 ELVERLDSNYLRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERDSKEETFIDA 239 (359)
T ss_pred hhhhhhhccccCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HHHhhhhcccCceeee
Confidence 36788888999999999998 88888 99999999999999999964 6779999999999999
Q ss_pred eeehhhhcCCChHHHHHHHh-----hccCChhHHhhC--CccCC
Q psy18088 128 AEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCL--PTVFP 164 (166)
Q Consensus 128 ~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l--~~~~p 164 (166)
+++.+++||++..+|+++.+ ++++...+++.| -++||
T Consensus 240 ~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyP 283 (359)
T KOG0708|consen 240 GQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYP 283 (359)
T ss_pred cccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceec
Confidence 99999999999999999998 678888899888 45666
No 171
>PRK00098 GTPase RsgA; Reviewed
Probab=98.66 E-value=1.2e-08 Score=86.24 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=65.4
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEE-------eecCCCCCCccC------------CcceeecCHHHHHHH
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVS-------HTTRGPRPGEVD------------GKAYHFVTRADMEER 118 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~-------~TTR~p~~ge~~------------G~~y~fvs~~~f~~~ 118 (166)
+++++|+|+||+|||||+ |+.... .....++ ||||.++..+++ +.++.+++.+++...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~-~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 242 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLE-LKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHY 242 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcC-CCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHH
Confidence 568999999999999999 554433 2333444 688866554333 335566787777765
Q ss_pred HHc-CCccceeeehh-hhcCCChHHHHHHHhhccCChhHHhh
Q psy18088 119 IAA-GEFLEHAEFAA-NLYGTSQCGRQNGRNYLIFNTLAAKC 158 (166)
Q Consensus 119 ~~~-~~fle~~~~~g-n~yG~~~~~I~~ile~v~L~~~~~~~ 158 (166)
+.. ..+..+..+.+ .+|+.|.++|+++++.=.+.+...+.
T Consensus 243 f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i~~~Ry~~ 284 (298)
T PRK00098 243 FPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEIAPSRYES 284 (298)
T ss_pred HHHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCCCHHHHHH
Confidence 543 45566666666 58999999999999843344444433
No 172
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.66 E-value=2.1e-08 Score=82.38 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=60.0
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++.++++--+. .+++.+.|+.|++|| +++|+||+|+|||||+ -|.+... ++.|++ +|.
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~Ge-----iv~llG~NGaGKTTlLkti~Gl~~------------~~~G~I~~~G~ 65 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERGE-----IVALLGRNGAGKTTLLKTIMGLVR------------PRSGRIIFDGE 65 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCeeEEECCe
Confidence 455666665553 788889999999999 8999999999999999 6666553 666664 666
Q ss_pred ceeecCHHHHHH-----HHHcCCccceeeehhh
Q psy18088 106 AYHFVTRADMEE-----RIAAGEFLEHAEFAAN 133 (166)
Q Consensus 106 ~y~fvs~~~f~~-----~~~~~~fle~~~~~gn 133 (166)
|..-.+..+.-+ ..+....++..++.+|
T Consensus 66 dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeEN 98 (237)
T COG0410 66 DITGLPPHERARLGIAYVPEGRRIFPRLTVEEN 98 (237)
T ss_pred ecCCCCHHHHHhCCeEeCcccccchhhCcHHHH
Confidence 654444443322 2344455666777777
No 173
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=1e-08 Score=91.91 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=41.4
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++|+.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGE-----IVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCe-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 577888888774 457889999999888 8999999999999999 777653
No 174
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.65 E-value=2.3e-08 Score=80.32 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=43.1
Q ss_pred hcCceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 27 NAGITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 27 ~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
-+++++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.-
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGE-----VTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCc
Confidence 345788888888774 358889999998888 8999999999999999 777754
No 175
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.65 E-value=1.7e-08 Score=84.22 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=67.9
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
.++++.|++.|. ..++.++||.|++|+ ++.++||+|+||||.+ +|.++-. |.+|++ +|.
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~-----i~GllG~NGAGKTTtfRmILglle------------~~~G~I~~~g~ 64 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGE-----IFGLLGPNGAGKTTTFRMILGLLE------------PTEGEITWNGG 64 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCe-----EEEeecCCCCCccchHHHHhccCC------------ccCceEEEcCc
Confidence 357888999996 778899999999888 8999999999999999 7777665 888875 665
Q ss_pred ceeecCHHHHHHHHHcCCccceeeeh------hhhcCCChHHHHHHH
Q psy18088 106 AYHFVTRADMEERIAAGEFLEHAEFA------ANLYGTSQCGRQNGR 146 (166)
Q Consensus 106 ~y~fvs~~~f~~~~~~~~fle~~~~~------gn~yG~~~~~I~~il 146 (166)
+........+.++.....+..-.++. +.+-|.++.++++-+
T Consensus 65 ~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~ 111 (300)
T COG4152 65 PLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL 111 (300)
T ss_pred chhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHH
Confidence 43222333344443333333333433 335678876555433
No 176
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.65 E-value=5.2e-09 Score=86.84 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=35.9
Q ss_pred eeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 34 ILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 34 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 28 ~~~~~~~~~~~il~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 28 EEILKKTGQTVGVNDVSLDVREGE-----IFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred hhhhhhcCCceEeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 35555553 446788899998888 8999999999999999 7776543
No 177
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.65 E-value=5.4e-09 Score=90.29 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=32.3
Q ss_pred eecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 35 LLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 35 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++.+....+ ++++.+++|+ +++|+||||||||||+ ++.++..
T Consensus 4 ~l~~~~~~~~~-~isl~i~~Ge-----i~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 4 RFSKRLGDFSL-DADFTLPGQG-----VTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred EEEEEECCEEE-EEEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 34544432122 6788888777 8999999999999999 7777643
No 178
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=1.6e-08 Score=83.98 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=41.2
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.++.++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGE-----YVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence 3677888887762 457889999998888 8999999999999999 777654
No 179
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=6.7e-09 Score=84.33 Aligned_cols=47 Identities=13% Similarity=0.000 Sum_probs=36.5
Q ss_pred EeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+...++.++++.+.+|+ .++|+||||+|||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~l~~is~~i~~Ge-----~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 3 VENLSKDWKEFKLKNVSLEVERGD-----YFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred eEeEEEEeCCceeeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCcC
Confidence 445555543336788999998888 8999999999999999 7777543
No 180
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=3e-08 Score=82.61 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=40.7
Q ss_pred ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||+|||||+ ++.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge-----~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGE-----WVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC
Confidence 566778887764 237889999999888 8999999999999999 7776543
No 181
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.64 E-value=3e-08 Score=99.09 Aligned_cols=90 Identities=13% Similarity=0.215 Sum_probs=63.5
Q ss_pred ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088 30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV-- 102 (166)
Q Consensus 30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~-- 102 (166)
.+++++|++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.++.+ |.+|++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge-----~vaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~i 444 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGK-----TYAFVGESGCGKSTILKLIERLYD------------PTEGDIII 444 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCC-----EEEEECCCCCCHHHHHHHHHHhcc------------CCCCeEEE
Confidence 367788887764 358899999999888 8999999999999999 8888776 888874
Q ss_pred -CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcC
Q psy18088 103 -DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYG 136 (166)
Q Consensus 103 -~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG 136 (166)
+|.+..-++...+++. +.+..++...++.+| .||
T Consensus 445 ~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g 483 (1466)
T PTZ00265 445 NDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYS 483 (1466)
T ss_pred eCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhc
Confidence 3555433444444332 233444445677777 454
No 182
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.64 E-value=2.1e-08 Score=82.72 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=40.6
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+....+++|.+. ..++.++++.+.+|+ .++|+||||||||||+ +++++-.
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge-----~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGE-----RVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHcCcCc
Confidence 345667777764 467888999999888 8999999999999999 8877654
No 183
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.64 E-value=2.7e-08 Score=80.58 Aligned_cols=46 Identities=9% Similarity=-0.073 Sum_probs=37.3
Q ss_pred EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 2 ~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 2 KIKDLHVSVEDKEILKGVNLTVKKGE-----IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred eEeeEEEEECCEEEEeccceEEcCCC-----EEEEECCCCCCHHHHHHHHhCC
Confidence 3456666553 457889999999888 8999999999999999 77775
No 184
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.64 E-value=2.6e-08 Score=77.76 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=42.4
Q ss_pred eeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce
Q psy18088 34 ILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY 107 (166)
Q Consensus 34 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y 107 (166)
+++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+... |.+|++ +|.+.
T Consensus 3 ~~l~~~~~~~~~l~~~~~~i~~G~-----~~~l~G~nGsGKStLl~~i~G~~~------------~~~G~v~~~g~~~ 63 (180)
T cd03214 3 ENLSVGYGGRTVLDDLSLSIEAGE-----IVGILGPNGAGKSTLLKTLAGLLK------------PSSGEILLDGKDL 63 (180)
T ss_pred eEEEEEECCeeeEeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEEC
Confidence 34555443 347788899998888 8999999999999999 7777654 667763 55543
No 185
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.64 E-value=2e-08 Score=83.31 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=40.6
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ +|.+..
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGK-----ITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 567778887663 457788999999888 8999999999999999 777754
No 186
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=1.1e-08 Score=82.71 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=37.5
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~il~~i~~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 3 LENVSKFYGGFVALDGVSLDIKEGE-----FFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred EEeEEEEeCCeeeeccceEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 456666553 457889999999888 8999999999999999 7776543
No 187
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.64 E-value=2e-08 Score=83.30 Aligned_cols=49 Identities=14% Similarity=0.012 Sum_probs=39.8
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+.-.
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSP-----VTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCC-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence 45667777664 457889999999888 8999999999999999 7777543
No 188
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.63 E-value=1.8e-08 Score=83.45 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=41.3
Q ss_pred ceEEeeecceee----------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC----------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQ-----TLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCC-----EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 567888887663 357889999999888 8999999999999999 7777543
No 189
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.63 E-value=2.2e-08 Score=80.30 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=38.6
Q ss_pred eEEeeecceee--------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC--------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGE-----CVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 45566776663 357889999999888 8999999999999999 777754
No 190
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.63 E-value=2.5e-08 Score=85.49 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=39.7
Q ss_pred ceEEeeecceee-----------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-----------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++|+.|.+|+ +++|+|+||||||||+ +|.++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGK-----TLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCC-----EEEEECCCCCcHHHHHHHHHcCC
Confidence 456777776663 457889999999888 8999999999999999 666654
No 191
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.62 E-value=1.8e-08 Score=88.38 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=62.6
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc----ceeecCHHH
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK----AYHFVTRAD 114 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~----~y~fvs~~~ 114 (166)
...+.++||.+++|+ +++|+||||||||||+ +|.++.. |..|++ +|. +..-.+...
T Consensus 37 ~~~l~~vsf~i~~Ge-----i~~I~G~nGsGKSTLlr~L~Gl~~------------p~~G~I~idG~~~~~~i~~~~~~~ 99 (382)
T TIGR03415 37 VVGVANASLDIEEGE-----ICVLMGLSGSGKSSLLRAVNGLNP------------VSRGSVLVKDGDGSIDVANCDAAT 99 (382)
T ss_pred EEEEEeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCCcEEEECCEecccccccCCHHH
Confidence 556778899999888 8999999999999999 7777654 777764 553 221123222
Q ss_pred HHH--------HHHcCCccceeeehhh-hcC-----CCh----HHHHHHHhhccCCh
Q psy18088 115 MEE--------RIAAGEFLEHAEFAAN-LYG-----TSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 115 f~~--------~~~~~~fle~~~~~gn-~yG-----~~~----~~I~~ile~v~L~~ 153 (166)
... .+|...++++.++.+| .|| .+. ..+.++++.++|.+
T Consensus 100 l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~ 156 (382)
T TIGR03415 100 LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ 156 (382)
T ss_pred HHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence 221 2455567777888877 333 333 23456677777764
No 192
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.62 E-value=2e-08 Score=79.52 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=39.5
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+.++++++.+. ..++.+.++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGG-----LLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 44567776653 457889999999888 8999999999999999 7777653
No 193
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.62 E-value=1e-08 Score=91.91 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=41.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~ 55 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQ-----VHALMGENGAGKSTLLKILSGNYQ 55 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 466778887764 457889999999888 8999999999999999 7777543
No 194
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.62 E-value=2e-08 Score=90.47 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=73.0
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~ 105 (166)
+++..++++.|. +.++++.++.|++|| +.+|+|-+|+|||||+ ++.+... |.+|+ ++|+
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~GE-----V~aL~GeNGAGKSTLmKiLsGv~~------------p~~G~I~~~G~ 70 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPGE-----VHALLGENGAGKSTLMKILSGVYP------------PDSGEILIDGK 70 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCce-----EEEEecCCCCCHHHHHHHHhCccc------------CCCceEEECCE
Confidence 677889999995 899999999999999 7999999999999999 8877654 88998 4898
Q ss_pred ceeecCHHHHHHH-----HHcCCccceeeehhhh
Q psy18088 106 AYHFVTRADMEER-----IAAGEFLEHAEFAANL 134 (166)
Q Consensus 106 ~y~fvs~~~f~~~-----~~~~~fle~~~~~gn~ 134 (166)
.+.|.+..+-.+. .|.-.+++..++..|.
T Consensus 71 ~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNi 104 (500)
T COG1129 71 PVAFSSPRDALAAGIATVHQELSLVPNLSVAENI 104 (500)
T ss_pred EccCCCHHHHHhCCcEEEeechhccCCccHHHHh
Confidence 8888777665442 4555688888888883
No 195
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.62 E-value=2.7e-08 Score=81.13 Aligned_cols=51 Identities=14% Similarity=-0.023 Sum_probs=42.8
Q ss_pred hcCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 27 NAGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
|..++.++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 4 ~~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 4 NKPILEIKNLHASVNENEILKGLNLSINKGE-----IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CCceEEEEeEEEEeCCEEeeecceeEEcCCc-----EEEEECCCCCCHHHHHHHHcCC
Confidence 444678888887774 468889999999888 8999999999999999 77774
No 196
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.62 E-value=5.2e-08 Score=79.87 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=53.1
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA 106 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~ 106 (166)
+..++++|.-. ..++++.|+..+.|| +++|+||+|+|||||+ .+.+.-. |..|++ +|++
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~pGe-----v~ailGPNGAGKSTlLk~LsGel~------------p~~G~v~~~g~~ 64 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRPGE-----VLAILGPNGAGKSTLLKALSGELS------------PDSGEVTLNGVP 64 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccCCc-----EEEEECCCCccHHHHHHHhhCccC------------CCCCeEeeCCcC
Confidence 34567788774 778899999999999 8999999999999999 7777665 888874 6766
Q ss_pred eeecCHHHHH
Q psy18088 107 YHFVTRADME 116 (166)
Q Consensus 107 y~fvs~~~f~ 116 (166)
..-.+..++-
T Consensus 65 l~~~~~~~lA 74 (259)
T COG4559 65 LNSWPPEELA 74 (259)
T ss_pred hhhCCHHHHH
Confidence 5444444443
No 197
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.62 E-value=2.6e-08 Score=79.13 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=37.2
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~l~~~s~~i~~G~-----~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 3 IKNLHKSFGDFHVLKGIDLTVKKGE-----VVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEEEEEEECCeEeecCceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 456665553 457788999998888 8999999999999999 7777543
No 198
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.61 E-value=3.7e-08 Score=81.71 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=40.1
Q ss_pred ceEEeeecceee----------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC----------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ +|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGE-----TVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 355667776664 457889999999888 8999999999999999 7777643
No 199
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.61 E-value=1.7e-08 Score=81.86 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=28.6
Q ss_pred CCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 46 GNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 46 ~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 2 ~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 2 KGVNLTIQQGE-----FISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 46778888788 8999999999999999 7777643
No 200
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.60 E-value=2.6e-08 Score=81.15 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=40.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGE-----VVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 456777777664 457889999999888 8999999999999999 7776543
No 201
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.60 E-value=2.1e-08 Score=79.89 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=35.8
Q ss_pred eecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 35 LLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 35 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 4 ~l~~~~~~~~~l~~isl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 4 DLTVSYGGHPVLEDVSFEVKPGE-----FLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred cceeEECCEEeeecceeEEcCCC-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence 4554442 457788999998888 8999999999999999 7777643
No 202
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.59 E-value=2.7e-08 Score=83.32 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=40.3
Q ss_pred eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
.+++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGK-----YYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 45667777763 258899999999888 8999999999999999 7777654
No 203
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5.7e-08 Score=78.04 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=59.9
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCH---HHHH
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTR---ADME 116 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~---~~f~ 116 (166)
..+.+++|.+..|| ++.|.||+|+|||||+ +++++-. |.+|++ +|.....+.. +.+.
T Consensus 16 ~lf~~L~f~l~~Ge-----~~~i~G~NG~GKTtLLRilaGLl~------------p~~G~v~~~~~~i~~~~~~~~~~l~ 78 (209)
T COG4133 16 TLFSDLSFTLNAGE-----ALQITGPNGAGKTTLLRILAGLLR------------PDAGEVYWQGEPIQNVRESYHQALL 78 (209)
T ss_pred eeecceeEEEcCCC-----EEEEECCCCCcHHHHHHHHHcccC------------CCCCeEEecCCCCccchhhHHHHHH
Confidence 44567788888888 8999999999999999 8888776 889986 3332211111 1222
Q ss_pred HHHHcCCccceeeehhh------hcC-CChHHHHHHHhhccCC
Q psy18088 117 ERIAAGEFLEHAEFAAN------LYG-TSQCGRQNGRNYLIFN 152 (166)
Q Consensus 117 ~~~~~~~fle~~~~~gn------~yG-~~~~~I~~ile~v~L~ 152 (166)
++-.+..+=.-.+..+| .+| .+.+.+.++++.|+|.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~ 121 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLA 121 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcc
Confidence 22222222222333333 456 4667899999988876
No 204
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=4.2e-08 Score=81.24 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=41.0
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++.++++++.+. ..++.++++.+++|+ +++|+||||||||||+ +|.+...
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge-----~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQ-----WTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 567788887764 237888999999888 8999999999999999 7777543
No 205
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.58 E-value=2.3e-08 Score=82.19 Aligned_cols=50 Identities=18% Similarity=0.043 Sum_probs=41.5
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGE-----VLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 577888887764 457788999999888 8999999999999999 7777543
No 206
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.58 E-value=3.2e-08 Score=83.05 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=40.1
Q ss_pred eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge-----~v~i~G~nGsGKSTLl~~l~Gl~~ 57 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGS-----YTALIGHTGSGKSTLLQHLNGLLQ 57 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCC-----EEEEECCCCChHHHHHHHHhcCCC
Confidence 55677777764 147889999999888 8999999999999999 8877654
No 207
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.58 E-value=4e-08 Score=79.48 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=36.4
Q ss_pred Eeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNISLRIKPGE-----VVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred EEEEEEecCCCCccceeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCcC
Confidence 445555542 346778888988888 8999999999999999 7776543
No 208
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.58 E-value=3.3e-08 Score=80.81 Aligned_cols=50 Identities=16% Similarity=0.035 Sum_probs=40.5
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGE-----VLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 456777777763 456788999999888 8999999999999999 7777643
No 209
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.57 E-value=6.4e-08 Score=78.67 Aligned_cols=47 Identities=13% Similarity=-0.038 Sum_probs=38.5
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.+++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGE-----VHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCC-----EEEEECCCCCCHHHHHHHHcCC
Confidence 45667777664 457888999998888 8999999999999999 77775
No 210
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.57 E-value=3.4e-08 Score=77.25 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=38.5
Q ss_pred ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+ ++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 4 ~l~~~~l~~~~---~l~~vs~~i~~G~-----~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 4 VLEVRGLSVKG---AVRDVSFEVRAGE-----IVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEEeccEEEe---eecceEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666777666 7778899998888 8999999999999999 7777654
No 211
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.57 E-value=5.1e-08 Score=75.66 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=36.0
Q ss_pred Eeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.+.++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~~~l~~~~~~i~~Ge-----~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNVSFSIEPGE-----SLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHHhccC
Confidence 445555543 346778888888888 8999999999999999 7776543
No 212
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.57 E-value=3.3e-08 Score=76.33 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=36.6
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.++++.+++|| +++|+||||||||||+ ++.+..
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGE-----VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 455665553 357788899999888 8999999999999999 777654
No 213
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.57 E-value=3.3e-08 Score=83.05 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=40.1
Q ss_pred eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGS-----YVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC
Confidence 45677777763 358889999999888 8999999999999999 7776543
No 214
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.56 E-value=2.3e-08 Score=81.33 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=35.6
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.+.++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGS-----LVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence 445555442 457788888888888 8999999999999999 666653
No 215
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.56 E-value=5e-08 Score=77.46 Aligned_cols=51 Identities=22% Similarity=0.135 Sum_probs=40.8
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+.++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~-----~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGE-----KIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCC-----EEEEECCCCCCHHHHHHHHhcccC
Confidence 3466777777664 257889999998888 8999999999999999 7776543
No 216
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.56 E-value=2.4e-08 Score=82.91 Aligned_cols=49 Identities=14% Similarity=0.010 Sum_probs=40.5
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.++++++++.+. ..++.+.++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGS-----IAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 466778887763 457788999999888 8999999999999999 777754
No 217
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=5.7e-08 Score=75.27 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=36.2
Q ss_pred Eeeecceeee---cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTCI---SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+.. .++.++++.+++|+ +++|+||+|+|||||+ ++.+..
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~G~-----~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDVSLTIKPGE-----KVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCC-----EEEEECCCCCCHHHHHHHHHcCC
Confidence 4455555532 57888899998888 8999999999999999 777654
No 218
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.56 E-value=1.6e-08 Score=90.37 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=35.7
Q ss_pred eecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 35 LLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 35 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 3 nl~~~~~~~~il~~vs~~i~~Ge-----~~~liG~nGsGKSTLl~~l~Gl~~ 49 (491)
T PRK10982 3 NISKSFPGVKALDNVNLKVRPHS-----IHALMGENGAGKSTLLKCLFGIYQ 49 (491)
T ss_pred ceEEEeCCEEeeeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence 3444442 457888999999888 8999999999999999 7777543
No 219
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.56 E-value=2e-08 Score=80.75 Aligned_cols=35 Identities=17% Similarity=0.003 Sum_probs=29.5
Q ss_pred CCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 3 l~~vs~~i~~Ge-----~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 3 LDKTDFVMGYHE-----HIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred eeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCcc
Confidence 457788888888 8999999999999999 7777543
No 220
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.55 E-value=5.2e-08 Score=83.61 Aligned_cols=49 Identities=18% Similarity=0.111 Sum_probs=40.7
Q ss_pred ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++|+.|.+|| +++|+|+||||||||+ +|.+..
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGE-----TLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCC-----EEEEECCCCchHHHHHHHHHcCC
Confidence 567778887663 467889999999888 8999999999999999 666654
No 221
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=4.7e-08 Score=79.89 Aligned_cols=49 Identities=14% Similarity=0.058 Sum_probs=40.8
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNG-----VFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhccC
Confidence 466778887764 457889999999888 8999999999999999 777653
No 222
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.54 E-value=9e-08 Score=75.99 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=36.3
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+.
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGE-----VHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEEEEEEeCCEEeeeccceEECCCc-----EEEEECCCCCCHHHHHHHHhCC
Confidence 445555442 457889999999888 8999999999999999 77776
No 223
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.54 E-value=4.5e-08 Score=77.56 Aligned_cols=47 Identities=17% Similarity=0.035 Sum_probs=37.6
Q ss_pred Eeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++|++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~-----~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGE-----LVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCC-----EEEEECCCCCCHHHHHHHHhCcCC
Confidence 456665553 257889999999888 8999999999999999 7777654
No 224
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.54 E-value=6.4e-08 Score=77.64 Aligned_cols=47 Identities=17% Similarity=0.064 Sum_probs=37.0
Q ss_pred EEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 32 VRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 32 ~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+..
T Consensus 3 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~-----~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 3 SIRNLNHYYGHGSLRKQVLFDINLEINPGE-----IVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred EEEEEEEEccCCCcceeEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 3455665542 457888999998888 8999999999999999 777654
No 225
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.54 E-value=1.8e-08 Score=79.48 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=37.9
Q ss_pred ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGT-----LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCc-----EEEEECCCCCCHHHHHHHHhCC
Confidence 345667766653 357788888988888 8999999999999999 77763
No 226
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=4.6e-08 Score=81.87 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=40.5
Q ss_pred CceEEeeecceeee------cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 29 GITVRILLNYRTCI------SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 29 ~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+.++++++++.+.. .++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNK-----VTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence 35677788877642 37889999999888 8999999999999999 666643
No 227
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.53 E-value=2.3e-08 Score=81.40 Aligned_cols=59 Identities=22% Similarity=0.202 Sum_probs=46.2
Q ss_pred eEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCc
Q psy18088 31 TVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGK 105 (166)
Q Consensus 31 ~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~ 105 (166)
++...+++.+ .+++.++.+|.+++|+ +++|+||+|+||||++ +|+.+-. |..|+ ++|.
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Ge-----i~GlLG~NGAGKTT~LRmiatlL~------------P~~G~v~idg~ 64 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGE-----ITGLLGENGAGKTTLLRMIATLLI------------PDSGKVTIDGV 64 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccce-----EEEEEcCCCCCchhHHHHHHHhcc------------CCCceEEEeec
Confidence 3444556555 3668899999999988 8999999999999999 8887665 77776 3665
Q ss_pred c
Q psy18088 106 A 106 (166)
Q Consensus 106 ~ 106 (166)
+
T Consensus 65 d 65 (245)
T COG4555 65 D 65 (245)
T ss_pred c
Confidence 5
No 228
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=2.7e-08 Score=79.45 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=32.4
Q ss_pred eecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 35 LLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 35 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+|++.+.-... +.++.+++ + +++|+||||||||||+ ++.+...
T Consensus 5 ~l~~~~~~~~~-~vsl~i~~-e-----~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 5 DIEKRLPDFTL-KIDFDLNE-E-----VTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred eeeEecCCeee-CceEEEcc-e-----eEEEECCCCCCHHHHHHHHhCCCC
Confidence 45555542222 88888887 7 8999999999999999 7776543
No 229
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=4.4e-08 Score=82.19 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=39.3
Q ss_pred eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++|++.+. ..++.++|+.+.+|+ +++|+||||||||||+ ++.+.-.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGE-----FVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC
Confidence 45667777663 247888999999888 8999999999999999 7776543
No 230
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=4.9e-08 Score=81.83 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=39.4
Q ss_pred eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ +|.+.-.
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~iiG~NGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGS-----FVALVGHTGSGKSTLMQHFNALLK 58 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 45667777664 247889999999888 8999999999999999 7777543
No 231
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=5.2e-08 Score=81.50 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=42.0
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|| +++|+||||+|||||+ ++.+...
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGE-----VTAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 567788887773 458889999999888 8999999999999999 7777653
No 232
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=7.3e-08 Score=77.70 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=36.3
Q ss_pred Eeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.+.++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 3 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDISLDIPAGE-----TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEEEEeCCCCccceeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhccc
Confidence 445555553 257788899998888 8999999999999999 777654
No 233
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.53 E-value=5.1e-08 Score=80.04 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=40.1
Q ss_pred ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.++++++++.+...++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 4 ~l~~~~l~~~~~~~il~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 4 QIELRNIALQAAQPLVHGVSLTLQRGR-----VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEeCeEEEeccceecceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 456777777664457888999999888 8999999999999999 777653
No 234
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=6.3e-08 Score=82.91 Aligned_cols=48 Identities=13% Similarity=-0.002 Sum_probs=39.0
Q ss_pred ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++||.+++|| +++|+||||||||||+ ++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGE-----VVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCC-----EEEEECCCCChHHHHHHHHHcC
Confidence 356677776663 357889999999998 8999999999999999 66554
No 235
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=4.6e-08 Score=81.35 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=38.6
Q ss_pred eEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGS-----YTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 45667776663 247888999999888 8999999999999999 777754
No 236
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.52 E-value=1.4e-07 Score=77.42 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=30.2
Q ss_pred CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.+.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 11 ~l~~vsl~i~~Ge-----i~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 11 RLGPLSAEVRAGE-----ILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred eecceEEEEcCCC-----EEEEECCCCCCHHHHHHHHcCCC
Confidence 5678888998888 8999999999999999 777654
No 237
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=5.1e-08 Score=76.00 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=35.8
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||+|||||+ ++.+..
T Consensus 3 ~~~l~~~~~~~~~l~~i~~~i~~G~-----~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGE-----IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEEEEECCeEEEeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 445555443 356788899998888 8999999999999999 666654
No 238
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.52 E-value=5.1e-08 Score=81.34 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=41.6
Q ss_pred ceEEeeecceee-------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGE-----FLVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 567778888774 358889999999888 8999999999999999 7777643
No 239
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.52 E-value=6.3e-08 Score=78.99 Aligned_cols=48 Identities=19% Similarity=0.038 Sum_probs=38.2
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQ-----VTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCC-----EEEEECCCCCCHHHHHHHHhccC
Confidence 34567766653 457788999999888 8999999999999999 776654
No 240
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=5.6e-08 Score=75.45 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=36.2
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~Ge-----~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 3 VRNLSKRYGKKTALDDISLTVEKGE-----IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 445555543 357788899998888 8999999999999999 777654
No 241
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=5.6e-08 Score=80.92 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=39.2
Q ss_pred eEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.++++.+++|| +++|+||||||||||+ ++.+.-
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGE-----MVALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 45667777763 357889999999888 8999999999999999 776654
No 242
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.51 E-value=5.8e-08 Score=82.41 Aligned_cols=48 Identities=23% Similarity=0.156 Sum_probs=39.7
Q ss_pred eEEeeecceeee------cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTCI------SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+.++++++.+.. .++.++++.|++|+ +++|+||||||||||+ ++.+.-
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge-----~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGE-----FIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCC-----EEEEECCCCCcHHHHHHHHhCCC
Confidence 556778877742 47889999999888 8999999999999999 777754
No 243
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.50 E-value=7.1e-08 Score=74.66 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=36.6
Q ss_pred Eeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~~~~~~~~~~~~l~~i~l~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 3 LENLSLATPDGRVLLKDLSFEIKPGD-----RLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EEEEEEEcCCCCeeeecCeEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 445555542 357788899998888 8999999999999999 7776543
No 244
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.50 E-value=7.7e-08 Score=77.34 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=38.6
Q ss_pred eEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~-----~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGE-----TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCc
Confidence 45667776663 357889999998888 8999999999999999 766654
No 245
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.50 E-value=4.4e-08 Score=82.97 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=42.5
Q ss_pred EEEEEcCCCCChhhhc--ccccccc--------ceeeeEEeecCCCCCCccCCcceeecCHHHH
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLD--------RFGFSVSHTTRGPRPGEVDGKAYHFVTRADM 115 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~--------~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f 115 (166)
+|+|+||+|||||+|. |...+.. .+....+++|++|+++|.+|++||+++.-++
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~ 64 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDP 64 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEech
Confidence 3799999999999999 6555442 1334557889999999999999999875443
No 246
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.50 E-value=6.1e-08 Score=80.72 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=39.5
Q ss_pred eEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+...
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGE-----YIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 45667776662 458889999999888 8999999999999999 7777543
No 247
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.1e-07 Score=81.46 Aligned_cols=48 Identities=15% Similarity=-0.031 Sum_probs=39.4
Q ss_pred ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++|+.|++|| +++|+||||||||||+ +|.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge-----~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGE-----IRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHHcc
Confidence 456778877662 457889999999888 8999999999999999 66654
No 248
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.49 E-value=8.8e-08 Score=75.82 Aligned_cols=48 Identities=15% Similarity=-0.021 Sum_probs=38.8
Q ss_pred eEEeeecceee-------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.+.++.+++|+ .++|+||||||||||+ ++.+..
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge-----~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGE-----LTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 35667776663 458889999998888 8999999999999999 777654
No 249
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.49 E-value=8.3e-08 Score=85.64 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=42.0
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGD-----SWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhccCC
Confidence 567788888874 458889999999888 8999999999999999 7777543
No 250
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=7.8e-08 Score=89.01 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=41.5
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++.++++++.+. ..++.++||.|.+|+ .++|+||||||||||+ +|.+..
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge-----~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQ-----KVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 356778888885 458889999999888 8999999999999999 777753
No 251
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.49 E-value=8.1e-08 Score=79.54 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=56.4
Q ss_pred eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHHHHHH
Q psy18088 41 CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRADMEE 117 (166)
Q Consensus 41 ~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f~~ 117 (166)
...++.|+||.+.+|| .++|+|++|||||||+ ||++... |..|++ +|.=- +.-++.
T Consensus 39 ~~~aL~disf~i~~Ge-----~vGiiG~NGaGKSTLlkliaGi~~------------Pt~G~v~v~G~v~---~li~lg- 97 (249)
T COG1134 39 EFWALKDISFEIYKGE-----RVGIIGHNGAGKSTLLKLIAGIYK------------PTSGKVKVTGKVA---PLIELG- 97 (249)
T ss_pred eEEEecCceEEEeCCC-----EEEEECCCCCcHHHHHHHHhCccC------------CCCceEEEcceEe---hhhhcc-
Confidence 5788999999999999 8999999999999999 9988664 888874 55310 011111
Q ss_pred HHHcCCccceeee------hhhhcCCChHHHHHHHh
Q psy18088 118 RIAAGEFLEHAEF------AANLYGTSQCGRQNGRN 147 (166)
Q Consensus 118 ~~~~~~fle~~~~------~gn~yG~~~~~I~~ile 147 (166)
..|-+..+- .+-.+|.++.++++..+
T Consensus 98 ----~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~ 129 (249)
T COG1134 98 ----AGFDPELTGRENIYLRGLILGLTRKEIDEKVD 129 (249)
T ss_pred ----cCCCcccchHHHHHHHHHHhCccHHHHHHHHH
Confidence 123333333 33367888877666555
No 252
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.48 E-value=7.1e-08 Score=77.25 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=40.8
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.+.++.+.+|+ .++|+||||||||||+ ++.+...
T Consensus 11 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVDAGE-----ALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred eEEEeeEEEecCCceeeecceEEECCCC-----EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 567778887663 457888999998888 8999999999999999 7776543
No 253
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.48 E-value=7.3e-08 Score=79.14 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=40.8
Q ss_pred CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 29 GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 29 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+.++++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGD-----VISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 3566778877663 457888999999888 8999999999999999 777654
No 254
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.48 E-value=6.8e-08 Score=75.19 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=36.5
Q ss_pred Eeeecceeee---cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTCI---SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+.. .++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 3 ~~~~~~~~~~~~~~~l~~i~~~i~~Ge-----~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNLSLELKQGE-----KIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEEEEeCCCCccceEEEEEEEcCCC-----EEEEECCCCCCHHHHHHHHhccCC
Confidence 4455555432 47778899998888 8999999999999999 7777643
No 255
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.48 E-value=9.9e-08 Score=76.25 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=37.6
Q ss_pred eEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.-
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~-----~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGE-----KVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCc
Confidence 34556666553 347888999998888 8999999999999999 776653
No 256
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.47 E-value=8.5e-08 Score=78.52 Aligned_cols=52 Identities=23% Similarity=0.144 Sum_probs=42.4
Q ss_pred hcCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 27 NAGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+..+++++++++.+. ..++.+.++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 4 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 4 NEAIIETENLNLFYTDFKALNNINIKILKNS-----ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred CCceEEEeeeEEEeCCceeecceeeEEcCCC-----EEEEECCCCCCHHHHHHHHhccc
Confidence 344677888887764 457889999999888 8999999999999999 776643
No 257
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.47 E-value=1.1e-07 Score=78.23 Aligned_cols=50 Identities=16% Similarity=-0.002 Sum_probs=40.8
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+.++++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+..
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQ-----KVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCC-----EEEEECCCCCCHHHHHHHHHccc
Confidence 4577778877664 357888899998888 8999999999999999 777654
No 258
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.47 E-value=7.2e-08 Score=73.13 Aligned_cols=47 Identities=19% Similarity=0.048 Sum_probs=35.9
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+...
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~~~~Ge-----~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 3 LENLSKTYGGKLLLKDISLTINPGD-----RIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred EEEEEEEECCceEEEeeEEEECCCC-----EEEEECCCCCCHHHHHHHHcCCCC
Confidence 445555442 356778888888888 8999999999999999 7777654
No 259
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.47 E-value=5.1e-08 Score=76.53 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=51.2
Q ss_pred CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeecCH--HHHHHH
Q psy18088 44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTR--ADMEER 118 (166)
Q Consensus 44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~--~~f~~~ 118 (166)
.+.+++++|.+|| ++.|+||||||||||+ .+.+.-. ...++ .|+ +++.+...+.. ....-+
T Consensus 17 LLa~~n~Tia~Ge-----ivtlMGPSGcGKSTLls~~~G~La---~~F~~------~G~~~l~~~~l~~lPa~qRq~GiL 82 (213)
T COG4136 17 LLANVNFTIAKGE-----IVTLMGPSGCGKSTLLSWMIGALA---GQFSC------TGELWLNEQRLDMLPAAQRQIGIL 82 (213)
T ss_pred EEEeeeEEecCCc-----EEEEECCCCccHHHHHHHHHhhcc---cCcce------eeEEEECCeeccccchhhhheeee
Confidence 3557889999898 8999999999999999 5554322 11111 133 34444333332 224445
Q ss_pred HHcCCccceeeehhh-hcCCC
Q psy18088 119 IAAGEFLEHAEFAAN-LYGTS 138 (166)
Q Consensus 119 ~~~~~fle~~~~~gn-~yG~~ 138 (166)
+|..-+.++..+.+| .+.++
T Consensus 83 FQD~lLFphlsVg~Nl~fAlp 103 (213)
T COG4136 83 FQDALLFPHLSVGQNLLFALP 103 (213)
T ss_pred ecccccccccccccceEEecC
Confidence 677777888888887 34443
No 260
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.47 E-value=6e-08 Score=79.95 Aligned_cols=49 Identities=6% Similarity=0.066 Sum_probs=40.1
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ +|.+.-
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge-----~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGK-----ILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 566778877764 457778899998888 8999999999999999 777754
No 261
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=8.1e-08 Score=82.11 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=42.1
Q ss_pred ceEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.++..
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge-----~~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNK-----IYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 577888888764 248889999999888 8999999999999999 7777654
No 262
>PLN03130 ABC transporter C family member; Provisional
Probab=98.46 E-value=1.4e-07 Score=95.11 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=68.2
Q ss_pred eEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCC-CccC-
Q psy18088 31 TVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRP-GEVD- 103 (166)
Q Consensus 31 ~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~-ge~~- 103 (166)
.+++++++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.+... |.+ |++.
T Consensus 615 I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge-----~vaIvG~sGSGKSTLl~lLlG~~~------------~~~GG~I~l 677 (1622)
T PLN03130 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGS-----LVAIVGSTGEGKTSLISAMLGELP------------PRSDASVVI 677 (1622)
T ss_pred eEEEeeEEEccCCCCCceeeceeEEecCCC-----EEEEECCCCCCHHHHHHHHHHhhc------------cCCCceEEE
Confidence 56667776653 346888999998888 8999999999999999 5555443 666 5531
Q ss_pred -C-cceeecCHHHHHHHHHcCCccceeeehhh-hcCCC--hHHHHHHHhhccCChh
Q psy18088 104 -G-KAYHFVTRADMEERIAAGEFLEHAEFAAN-LYGTS--QCGRQNGRNYLIFNTL 154 (166)
Q Consensus 104 -G-~~y~fvs~~~f~~~~~~~~fle~~~~~gn-~yG~~--~~~I~~ile~v~L~~~ 154 (166)
+ ..| ..|..++..+++.+| .+|.+ .+.++++++.+.|.+.
T Consensus 678 ~~~Iay-----------v~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~d 722 (1622)
T PLN03130 678 RGTVAY-----------VPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHD 722 (1622)
T ss_pred cCeEEE-----------EcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHH
Confidence 1 122 234467788899999 56754 5678888887777654
No 263
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.46 E-value=9e-08 Score=77.45 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=36.0
Q ss_pred Eeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 33 RILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 33 ~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 3 i~~l~~~~~~~~~~~~l~~i~~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGLSLTIPPGK-----TVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEEEEecCCCCCccceeceEEEecCCC-----EEEEEeCCCCCHHHHHHHHhccC
Confidence 445555442 347788899998888 8999999999999999 777764
No 264
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=8.1e-08 Score=76.47 Aligned_cols=48 Identities=15% Similarity=0.123 Sum_probs=38.3
Q ss_pred eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
..+++++|.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGE-----MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCc-----EEEEECCCCCCHHHHHHHhcccC
Confidence 45567776662 457788888998888 8999999999999999 777653
No 265
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.3e-07 Score=76.28 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=36.5
Q ss_pred Eeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 33 RILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 33 ~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++.+. ..++.++++.+.+|+ +++|+||+|||||||+ +|.+...
T Consensus 3 ~~~l~~~~~~~~~~l~~i~~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 3 FENVTFAYDPGRPVLKDVSFTIPAGK-----KVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred EEEEEEEeCCCCceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcccC
Confidence 445555542 347788888988888 8999999999999999 7777543
No 266
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.46 E-value=2.5e-07 Score=85.92 Aligned_cols=50 Identities=16% Similarity=0.008 Sum_probs=41.2
Q ss_pred CceEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 29 GITVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 29 ~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+..+++++++.+ ...++.++++.+++|+ .++|+||||||||||+ ++.+..
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge-----~~~IvG~nGsGKSTLl~lL~Gl~ 502 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGN-----HLLICGPNGCGKSSLFRILGELW 502 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 457788888765 2357889999999888 8999999999999999 777754
No 267
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.46 E-value=9.4e-08 Score=86.89 Aligned_cols=49 Identities=14% Similarity=0.006 Sum_probs=41.8
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.|.+|+ +++|+||||||||||+ +|.+.-
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge-----~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGA-----KIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 577888888774 568899999999888 8999999999999999 777653
No 268
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.45 E-value=8.7e-09 Score=76.14 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=25.8
Q ss_pred CCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+.++.+.+|+ +++|+||+|||||||+ ++.+...
T Consensus 3 ~v~~~i~~g~-----~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 3 NVSLEIKPGE-----IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEEETTS-----EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred ceEEEEcCCC-----EEEEEccCCCccccceeeeccccc
Confidence 4456666666 8999999999999999 6666543
No 269
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.45 E-value=9.9e-08 Score=78.39 Aligned_cols=48 Identities=17% Similarity=0.058 Sum_probs=40.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+.
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRS-----VTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhcc
Confidence 466788888774 567889999999888 8999999999999999 77764
No 270
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.5e-07 Score=76.82 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=37.3
Q ss_pred EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 4 ~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 4 KTTNLNLFYGKKQALFDINMQIEQNK-----ITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eeeeeEEEECCEeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 3556666663 457788999998888 8999999999999999 77765
No 271
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.45 E-value=9.5e-08 Score=78.69 Aligned_cols=43 Identities=26% Similarity=0.256 Sum_probs=34.4
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
...++++++.+..+.+..+.+++|+||||||||||+ ++.+...
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 345566677777777778889999999999999999 7777543
No 272
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.2e-07 Score=85.60 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=39.8
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++.++++.+. ..++.++|+.+.+|+ +++|+||||||||||+ ++.+.-
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge-----~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGN-----RYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 45677787774 457889999999888 8999999999999999 777653
No 273
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.44 E-value=7.8e-08 Score=78.19 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=31.7
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
..++.++++.+++|+ +++|+||||||||||+ +|.+..
T Consensus 34 ~~il~~vs~~i~~Ge-----~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 34 VEALKGISFTIEKGE-----IVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred eeeeeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCc
Confidence 347788899998888 8999999999999999 777654
No 274
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.44 E-value=8.6e-08 Score=75.16 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=31.3
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
.++.++++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 6 ~il~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 6 EVLKGLNFAAERGE-----VLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred ceecceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 46778889998888 8999999999999999 7776543
No 275
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.4e-07 Score=87.11 Aligned_cols=50 Identities=18% Similarity=0.017 Sum_probs=41.3
Q ss_pred CceEEeeecceee------------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 29 GITVRILLNYRTC------------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 29 ~~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.+++++++++.+. ..++.++||.|++|+ +++|+||||||||||+ +|.+.-
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge-----~~~lvG~nGsGKSTLlk~i~Gl~ 374 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGE-----TLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCC-----EEEEECCCCCCHHHHHHHHHcCC
Confidence 3678888887763 357889999999888 8999999999999999 766654
No 276
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.44 E-value=9.9e-08 Score=81.00 Aligned_cols=82 Identities=17% Similarity=0.252 Sum_probs=62.5
Q ss_pred cEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce------eecC--HHHHHHHHHcCCccceee
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY------HFVT--RADMEERIAAGEFLEHAE 129 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y------~fvs--~~~f~~~~~~~~fle~~~ 129 (166)
.+.+|.|+||||||||+ +|+++-. |.+|++ ||.-. .|+. +..+.+.+|.-.++++.+
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~r------------PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTR------------PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCC------------ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 68999999999999999 9999775 878864 65421 2233 333566788889999999
Q ss_pred ehhh-hcCCCh---HHHHHHHhhccCChh
Q psy18088 130 FAAN-LYGTSQ---CGRQNGRNYLIFNTL 154 (166)
Q Consensus 130 ~~gn-~yG~~~---~~I~~ile~v~L~~~ 154 (166)
+.+| .||... +..+++++.+++++.
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hL 121 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHL 121 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHH
Confidence 9999 689764 567888888876643
No 277
>PLN03232 ABC transporter C family member; Provisional
Probab=98.44 E-value=2.4e-07 Score=92.87 Aligned_cols=97 Identities=14% Similarity=0.053 Sum_probs=68.0
Q ss_pred ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088 30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV-- 102 (166)
Q Consensus 30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~-- 102 (166)
-.+++++++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.+... |.+|.+
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge-----~vaIvG~sGSGKSTLl~lLlG~~~------------~~~G~i~~ 676 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGS-----LVAIVGGTGEGKTSLISAMLGELS------------HAETSSVV 676 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCc------------ccCCCEEE
Confidence 356777776653 346889999999888 8999999999999999 6665443 555532
Q ss_pred -C-CcceeecCHHHHHHHHHcCCccceeeehhh-hcCC--ChHHHHHHHhhccCChh
Q psy18088 103 -D-GKAYHFVTRADMEERIAAGEFLEHAEFAAN-LYGT--SQCGRQNGRNYLIFNTL 154 (166)
Q Consensus 103 -~-G~~y~fvs~~~f~~~~~~~~fle~~~~~gn-~yG~--~~~~I~~ile~v~L~~~ 154 (166)
. .+.| ..|..++..+++.+| .+|. +.+.++++++.+.|.+.
T Consensus 677 ~~~~Iay-----------v~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~d 722 (1495)
T PLN03232 677 IRGSVAY-----------VPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHD 722 (1495)
T ss_pred ecCcEEE-----------EcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHH
Confidence 1 1122 234466778899998 5665 45678888887776654
No 278
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.42 E-value=1.4e-07 Score=76.99 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=39.8
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ +|.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQ-----VTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 466778887763 457888999999888 8999999999999999 77764
No 279
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.41 E-value=2.2e-07 Score=83.81 Aligned_cols=49 Identities=14% Similarity=0.037 Sum_probs=40.6
Q ss_pred ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.+.+|| +++|+||||||||||+ ++.+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge-----~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGE-----TLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCC-----EEEEECCCCCcHHHHHHHHhcCC
Confidence 566778887773 468899999999888 8999999999999999 666643
No 280
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.41 E-value=3e-07 Score=82.99 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=62.2
Q ss_pred ceEEeeeccee---eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cC
Q psy18088 30 ITVRILLNYRT---CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VD 103 (166)
Q Consensus 30 ~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~ 103 (166)
.+..+.+++-. ....+.+++|.+..|+ .++|+||||||||||. ++-+.-. |..|. .|
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~-----~lgIIGPSgSGKSTLaR~lvG~w~------------p~~G~VRLD 396 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGE-----ALGIIGPSGSGKSTLARLLVGIWP------------PTSGSVRLD 396 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCc-----eEEEECCCCccHHHHHHHHHcccc------------cCCCcEEec
Confidence 44455555533 2456778899999888 8999999999999999 5555432 77775 48
Q ss_pred CcceeecCHHHHHHH----HHcCCccceeeehhh
Q psy18088 104 GKAYHFVTRADMEER----IAAGEFLEHAEFAAN 133 (166)
Q Consensus 104 G~~y~fvs~~~f~~~----~~~~~fle~~~~~gn 133 (166)
|-++.-.++++|.+. .|.-++ .-+++..|
T Consensus 397 ga~l~qWd~e~lG~hiGYLPQdVeL-F~GTIaeN 429 (580)
T COG4618 397 GADLRQWDREQLGRHIGYLPQDVEL-FDGTIAEN 429 (580)
T ss_pred chhhhcCCHHHhccccCcCccccee-cCCcHHHH
Confidence 888887888888653 344444 44788888
No 281
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.4e-07 Score=77.89 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=41.6
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++.++++++.+. ..++.++++.+.+|+ +++|+||+|+|||||+ +|.+...
T Consensus 10 ~i~~~~~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 10 VFNISRLYLYINDKAILKDITIKIPNNS-----IFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred heeeeeEEEecCCceeEeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 566778887774 457889999998888 8999999999999999 8887653
No 282
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.41 E-value=3.1e-07 Score=73.01 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=54.0
Q ss_pred eecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeec
Q psy18088 35 LLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFV 110 (166)
Q Consensus 35 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fv 110 (166)
++++-+. .+++-++.+.-..|+ .++++||||+|||||+ .++.+.- |++|+. .|..+.|-
T Consensus 7 ~in~~yg~~q~lfdi~l~~~~ge-----tlvllgpsgagkssllr~lnlle~------------p~sg~l~ia~~~fd~s 69 (242)
T COG4161 7 GINCFYGAHQALFDITLDCPEGE-----TLVLLGPSGAGKSSLLRVLNLLEM------------PRSGTLNIAGNHFDFS 69 (242)
T ss_pred ccccccccchheeeeeecCCCCC-----EEEEECCCCCchHHHHHHHHHHhC------------CCCCeEEecccccccc
Confidence 4444443 455555555555566 8999999999999999 7776665 788873 44444332
Q ss_pred ---CHHHH-------HHHHHcCCccceeeehhhh
Q psy18088 111 ---TRADM-------EERIAAGEFLEHAEFAANL 134 (166)
Q Consensus 111 ---s~~~f-------~~~~~~~~fle~~~~~gn~ 134 (166)
+...+ ...+++..+.++.++..|+
T Consensus 70 ~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enl 103 (242)
T COG4161 70 KTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL 103 (242)
T ss_pred cCccHHHHHHHHHhhhhhhhhhccCchhHHHHHH
Confidence 12222 2346777888888887773
No 283
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.5e-07 Score=77.52 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=42.2
Q ss_pred hcCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 27 NAGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
-.+.++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQ-----VTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCceEEEEEEEEEeCCeEEeeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 345677888887764 457889999999888 8999999999999999 77764
No 284
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=1.9e-07 Score=76.23 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=40.1
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGT-----VNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 466778877663 467889999999888 8999999999999999 77765
No 285
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=1.5e-07 Score=76.81 Aligned_cols=48 Identities=17% Similarity=0.014 Sum_probs=39.5
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ +|.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQ-----ITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 466778877663 457788999999888 8999999999999999 77764
No 286
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.40 E-value=1.7e-07 Score=85.13 Aligned_cols=49 Identities=14% Similarity=0.006 Sum_probs=40.8
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ +|.+..
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge-----~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGA-----KIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 566778887774 357889999999888 8999999999999999 777653
No 287
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.40 E-value=1e-07 Score=78.88 Aligned_cols=49 Identities=16% Similarity=-0.000 Sum_probs=41.4
Q ss_pred CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 29 GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 29 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
..++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ +|.+.
T Consensus 18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 18 IKMRARDVSVFYGEKQALFDVDLDIPEKT-----VTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred ceEEEEeEEEEECCEEEEEEEEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence 4778888888774 457889999999888 8999999999999999 77764
No 288
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.40 E-value=1.8e-07 Score=76.48 Aligned_cols=48 Identities=19% Similarity=0.106 Sum_probs=39.5
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++.++++++.+. ..++.++++.+.+|+ +++|+||||+|||||+ ++.+.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYENK-----ITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHHhc
Confidence 456777777663 457889999998888 8999999999999999 77764
No 289
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.40 E-value=1.7e-07 Score=75.46 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=38.1
Q ss_pred eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
..+.++++++. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge-----~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQ-----VMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCe-----EEEEECCCCCCHHHHHHHHhCc
Confidence 34567777774 357889999998888 8999999999999999 77664
No 290
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.39 E-value=1.6e-07 Score=86.77 Aligned_cols=49 Identities=12% Similarity=0.029 Sum_probs=41.0
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++.+.++++.+. ..++.+++|.|.+|+ .++|+||||||||||+ +|.+..
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge-----~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNE-----RVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCC-----EEEEECCCCCCHHHHHHHHcCCC
Confidence 466778888774 457889999999888 8999999999999999 777753
No 291
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=1.6e-07 Score=77.60 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=40.9
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 21 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 21 ILEVKDLSIYYGEKRAVNDISMDIEKHA-----VTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred eEEEEEEEEEeCCceeeeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhc
Confidence 678889888774 457889999999888 8999999999999999 77663
No 292
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.38 E-value=1.6e-07 Score=74.10 Aligned_cols=44 Identities=20% Similarity=-0.028 Sum_probs=31.3
Q ss_pred eecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 35 LLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 35 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++.+. ..++.+ ++.+++|+ +++|+||||||||||+ ++.++-.
T Consensus 5 ~l~~~~~~~~~l~~-~~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 5 DCVKRYGVFFLLVE-LGVVKEGE-----VIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CeEEEECCEEEEcc-CcEECCCC-----EEEEECCCCChHHHHHHHHHcCCC
Confidence 4444442 334444 36777777 8999999999999999 7777643
No 293
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.38 E-value=7.7e-08 Score=77.76 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=37.6
Q ss_pred EEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 32 VRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
..+++++.+. ..++.+.++.+++|+ +++|+||||||||||+ ++.+...
T Consensus 24 ~~~~~~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 24 GILGRKGEVGEFWALKDVSFEVPRGE-----RIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred hhhhhhhhcCCeEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445555553 457888999998888 8999999999999999 7777643
No 294
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=1.8e-07 Score=77.56 Aligned_cols=49 Identities=18% Similarity=0.084 Sum_probs=41.5
Q ss_pred CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 29 GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 29 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.+++++++++.+. ..++.++++.|++|+ +++|+||||||||||+ ++.+.
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGK-----VTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 3677888888774 457889999999888 8999999999999999 77664
No 295
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=1.8e-07 Score=76.93 Aligned_cols=48 Identities=19% Similarity=0.080 Sum_probs=39.9
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+.
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKNS-----VTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcC
Confidence 567778877663 457889999998888 8999999999999999 77764
No 296
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.37 E-value=2e-07 Score=76.03 Aligned_cols=48 Identities=13% Similarity=-0.009 Sum_probs=40.1
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNE-----ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCc-----EEEEECCCCCCHHHHHHHHhcc
Confidence 567788887764 457889999998888 8999999999999999 77654
No 297
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.37 E-value=1.6e-07 Score=76.73 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=39.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 6 KMEARGLSFFYGDFQALHDISLEFEQNQ-----VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEeeeEEEECCeeeecceeEEEeCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence 456778877764 457889999999888 8999999999999999 77654
No 298
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.37 E-value=2.7e-07 Score=83.30 Aligned_cols=48 Identities=17% Similarity=-0.035 Sum_probs=39.9
Q ss_pred ceEEeeecceee------------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC------------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.+.
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge-----~~~i~G~nGsGKSTLlk~l~Gl 335 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGE-----TLGLVGESGSGKSTTGLALLRL 335 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCC-----EEEEECCCCCCHHHHHHHHhCc
Confidence 567778887763 357889999999888 8999999999999999 66664
No 299
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.37 E-value=5.2e-07 Score=80.93 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=68.4
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
.++..++++.|. +.+.++.|+.|++|| +-+|+|.+|+|||||+ ++-+... |.+||+ +|+
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~Ge-----IHaLLGENGAGKSTLm~iL~G~~~------------P~~GeI~v~G~ 66 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGE-----IHALLGENGAGKSTLMKILFGLYQ------------PDSGEIRVDGK 66 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCc-----EEEEeccCCCCHHHHHHHHhCccc------------CCcceEEECCE
Confidence 345667788884 778889999999999 7999999999999999 7777665 999994 898
Q ss_pred ceeecCHHHHHH-----HHHcCCccceeeehhh
Q psy18088 106 AYHFVTRADMEE-----RIAAGEFLEHAEFAAN 133 (166)
Q Consensus 106 ~y~fvs~~~f~~-----~~~~~~fle~~~~~gn 133 (166)
...|-+..+-.+ ..|.-.+++..++.+|
T Consensus 67 ~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~EN 99 (501)
T COG3845 67 EVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAEN 99 (501)
T ss_pred EeccCCHHHHHHcCCcEEeeccccccccchhhh
Confidence 877766555433 2355567888888888
No 300
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.36 E-value=2.2e-07 Score=78.14 Aligned_cols=48 Identities=21% Similarity=0.062 Sum_probs=39.4
Q ss_pred ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.++++++++. ...++.++++.+++|+ +++|+||||||||||+ +|.+..
T Consensus 39 ~l~i~nls~~-~~~vL~~vs~~i~~Ge-----~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 39 NLFFSNLCLV-GAPVLKNINLKIEKGE-----MLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred eEEEEEEEEe-cccceeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 4677787765 3457888999999888 8999999999999999 777654
No 301
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.36 E-value=1.9e-07 Score=95.86 Aligned_cols=109 Identities=17% Similarity=0.083 Sum_probs=73.3
Q ss_pred cCceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc-
Q psy18088 28 AGITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV- 102 (166)
Q Consensus 28 ~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~- 102 (166)
..+++++++++.+. ..++.++++.|++|| +++|+||+|||||||+ ++.+.-. |..|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GE-----i~gLLG~NGAGKTTLlkmL~Gll~------------ptsG~I~ 1997 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGE-----CFGLLGVNGAGKTTTFKMLTGDTT------------VTSGDAT 1997 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCc-----EEEEECCCCCcHHHHHHHHhCCCC------------CCccEEE
Confidence 44788889998875 458889999999998 8999999999999999 7777654 778874
Q ss_pred -CCcceeecCHHH----HHHHHHcCCccceeeehhh------hcCCChHH----HHHHHhhccCChh
Q psy18088 103 -DGKAYHFVTRAD----MEERIAAGEFLEHAEFAAN------LYGTSQCG----RQNGRNYLIFNTL 154 (166)
Q Consensus 103 -~G~~y~fvs~~~----f~~~~~~~~fle~~~~~gn------~yG~~~~~----I~~ile~v~L~~~ 154 (166)
+|.+... ...+ +....|...+.+..+..++ .+|.+.+. ++++++.++|.+.
T Consensus 1998 i~G~~i~~-~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~ 2063 (2272)
T TIGR01257 1998 VAGKSILT-NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLY 2063 (2272)
T ss_pred ECCEECcc-hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 6655311 1111 1122455556666666665 24665433 3455666777644
No 302
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.36 E-value=2e-07 Score=77.23 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=41.1
Q ss_pred CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 29 GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 29 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+.
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge-----~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKNK-----ITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhc
Confidence 3677888887763 567888999998888 8999999999999999 77664
No 303
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.36 E-value=2.9e-07 Score=83.68 Aligned_cols=50 Identities=20% Similarity=0.180 Sum_probs=39.7
Q ss_pred ceEEeeecceee------------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC------------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
.++.+++++.+. +.++++.||.|++|| +++|+|+||||||||. ++.++-.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE-----~lglVGeSGsGKSTlar~i~gL~~ 342 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE-----TLGLVGESGSGKSTLARILAGLLP 342 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 445666665553 466889999999999 8999999999999999 6666554
No 304
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.35 E-value=1.8e-07 Score=74.91 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=32.0
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
..++.++++.+++|+ +++|+||||||||||+ +|.+..
T Consensus 14 ~~il~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 14 LATLSNINIRIPTGQ-----LTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CcceeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhccC
Confidence 457888899998888 8999999999999999 777654
No 305
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=2.3e-07 Score=75.84 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=40.0
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.++++++++.+. ..++.+.++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENS-----VTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCC-----EEEEECCCCCCHHHHHHHHHhc
Confidence 466778887764 457889999998888 8999999999999999 77664
No 306
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.35 E-value=1.9e-07 Score=76.39 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=39.9
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++.++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNR-----VTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCc-----EEEEECCCCCCHHHHHHHHhcc
Confidence 566778877763 457889999999888 8999999999999999 77754
No 307
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.34 E-value=2e-07 Score=85.94 Aligned_cols=49 Identities=22% Similarity=0.135 Sum_probs=41.4
Q ss_pred ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.+++|.|.+|+ +++|+||||||||||+ ++.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge-----~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGE-----TLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCC-----EEEEECCCCChHHHHHHHHHcCC
Confidence 677888888773 357889999999888 8999999999999999 666653
No 308
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=2.7e-07 Score=83.31 Aligned_cols=49 Identities=18% Similarity=-0.018 Sum_probs=40.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~NGsGKSTLl~~i~G~~ 369 (530)
T PRK15064 319 ALEVENLTKGFDNGPLFKNLNLLLEAGE-----RLAIIGENGVGKTTLLRTLVGEL 369 (530)
T ss_pred eEEEEeeEEeeCCceeecCcEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 567778887764 457888999999888 8999999999999999 777654
No 309
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=3e-07 Score=75.19 Aligned_cols=49 Identities=12% Similarity=-0.006 Sum_probs=39.5
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~-----~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQ-----ITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhccc
Confidence 455677777664 457889999998888 8999999999999999 776653
No 310
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.34 E-value=1.9e-07 Score=77.63 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=46.9
Q ss_pred hhhHHHHHHh--cCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 18 VTKQSYIREN--AGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 18 ~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
|..+|.+... ..+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ +|.+.
T Consensus 10 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 10 VKNEEKIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENE-----VTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred ecchhhhccCCCceEEEEeeeEEEECCcceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence 4455666543 33688889988764 457888999998888 8999999999999999 77664
No 311
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5e-07 Score=80.15 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=75.1
Q ss_pred cCceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 28 AGITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 28 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
.+...+++|++.+. .+.+.+++|.+..|+ .++++||||+|||||. |+=++.+ +.+|. +
T Consensus 260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~-----tvAiVg~SG~gKsTI~rllfRFyD------------~~sG~I~i 322 (497)
T COG5265 260 LGAVAFINVSFAYDPRRPILNGISFTIPLGK-----TVAIVGESGAGKSTILRLLFRFYD------------VNSGSITI 322 (497)
T ss_pred cceEEEEEEEeeccccchhhcCccccccCcc-----EEEEEeCCCCcHHHHHHHHHHHhC------------CcCceEEE
Confidence 34667777776663 667888999988777 8999999999999999 8888887 88886 4
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCChHHHHHH
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTSQCGRQNG 145 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~~~~I~~i 145 (166)
+|.+..-++....++. ..++..+...++.-| .||-+..+.+++
T Consensus 323 d~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev 369 (497)
T COG5265 323 DGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEV 369 (497)
T ss_pred cchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHH
Confidence 8888777777776664 456666666666544 788776443333
No 312
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=3e-07 Score=75.92 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=41.1
Q ss_pred CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 29 GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 29 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+.++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEKQ-----VTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhcc
Confidence 3577788887764 467889999999888 8999999999999999 77764
No 313
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.33 E-value=2.7e-07 Score=76.66 Aligned_cols=51 Identities=18% Similarity=0.078 Sum_probs=41.8
Q ss_pred cCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc-cc
Q psy18088 28 AGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT-VL 83 (166)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~-~~ 83 (166)
+-+.++++++.... ..++++++++|++|| =-+|+||+|||||||+ ++.. +|
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge-----~W~I~G~NGsGKTTLL~ll~~~~~ 82 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDLSWQVNPGE-----HWAIVGPNGAGKTTLLSLLTGEHP 82 (257)
T ss_pred cceEEecceEEEECCEeeccccceeecCCC-----cEEEECCCCCCHHHHHHHHhcccC
Confidence 34677888777664 778999999999999 5899999999999999 5554 44
No 314
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.32 E-value=3e-07 Score=82.50 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=39.1
Q ss_pred ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. .++.++|+.+++|+ +++|+||||||||||+ ++.+..
T Consensus 265 ~l~~~~l~~~~~-~~l~~isl~i~~Ge-----~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 265 VFEVRNVTSRDR-KKVRDISFSVCRGE-----ILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred EEEEeCccccCC-CcccceeEEEcCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 567777776432 47889999999888 8999999999999999 777654
No 315
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=3.3e-07 Score=74.88 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=39.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.+.++.+++|+ +++|+||||||||||+ +|.+.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDLDFNQNE-----ITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred eEEEEeEEEEECCeeEEecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 566778887764 457889999998888 8999999999999999 77663
No 316
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=3e-07 Score=74.98 Aligned_cols=47 Identities=15% Similarity=0.009 Sum_probs=38.6
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+.++++++.+. ..++.++++.+++|+ +++|+||||+|||||+ ++.+.
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 4 FNIENLDLFYGENQALKSINLPIPARQ-----VTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred EEEeccEEEECCeeeeecceEEecCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence 45667776653 457889999999888 8999999999999999 77664
No 317
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.32 E-value=2.9e-07 Score=82.82 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=37.2
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+.++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+.
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGE-----VLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhhc
Confidence 456776663 457889999999888 8999999999999999 77765
No 318
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.32 E-value=2.4e-07 Score=83.32 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=40.7
Q ss_pred ceEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.|++|+ +++|+||||||||||+ ++.+..
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge-----~~~l~G~NGsGKSTLl~~l~Gl~ 334 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGE-----IFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 677888887762 357888999999888 8999999999999999 776653
No 319
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=3.1e-07 Score=75.94 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=40.3
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.++
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQ-----ITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence 567788887764 467889999999888 8999999999999999 77754
No 320
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=1.6e-07 Score=78.80 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=47.7
Q ss_pred hhhhhhHHHHH-Hhc-------CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 15 QMTVTKQSYIR-ENA-------GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 15 ~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.-|.+++-|+- .++ ..+.++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ +|.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 16 AETATRDIYLPPERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSKY-----VTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred ccccccceeccccccccCCCCceEEEEeeeEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 34556777776 111 2567888887764 457888999999888 8999999999999999 77764
No 321
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=2.4e-07 Score=76.09 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=40.1
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.+.++.+.+|+ +++|+||||||||||+ ++.+.
T Consensus 12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 12 VYQINGMNLWYGQHHALKNINLSIPENE-----VTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred eEEEeeEEEEECCeeeEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence 567888887764 457888999998888 8999999999999999 77653
No 322
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.31 E-value=3.3e-07 Score=74.81 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=39.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKE-----LTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCC-----EEEEECCCCCCHHHHHHHHhhc
Confidence 456778877663 567888999999888 8999999999999999 77764
No 323
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=4.3e-07 Score=84.13 Aligned_cols=49 Identities=12% Similarity=-0.006 Sum_probs=40.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++.++++++.+. ..++.++++.|.+|+ +++|+||||||||||+ +|.+..
T Consensus 312 ~l~~~~l~~~y~~~~il~~isl~i~~Ge-----~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGS-----RIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred eEEEEeeEEEeCCeeeeccceEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 466777777764 457889999999888 8999999999999999 776654
No 324
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.30 E-value=3.7e-07 Score=81.67 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=39.1
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+..
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge-----~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGE-----CVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCc-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 45667777764 457889999999888 8999999999999999 776643
No 325
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.30 E-value=2.6e-07 Score=72.86 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=29.4
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FL 79 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li 79 (166)
..++.++|+.+++|+ +++|+||||||||||+ ++
T Consensus 8 ~~~l~~isl~i~~G~-----~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 8 VHNLQNLDVSIPLNV-----LVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred eeeecceEEEEcCCC-----EEEEECCCCCCHHHHHHHH
Confidence 567788999999888 8999999999999999 55
No 326
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.30 E-value=3.9e-07 Score=82.85 Aligned_cols=49 Identities=8% Similarity=-0.028 Sum_probs=40.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++.++++++.+. ..++.++++.|++|+ +++|+||||||||||+ ++.+..
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~l~G~NGsGKSTLl~~i~G~~ 374 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGG-----IVGIIGPNGAGKSTLFKMITGQE 374 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 577778887764 457889999999888 8999999999999999 776653
No 327
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.30 E-value=3.7e-07 Score=73.78 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=28.9
Q ss_pred CCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 2 l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 2 VQDLNLSLKRGE-----VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred ccceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence 457788888888 8999999999999999 777754
No 328
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.30 E-value=6.3e-07 Score=92.17 Aligned_cols=107 Identities=17% Similarity=0.062 Sum_probs=71.3
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
.++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+.-. |.+|++ +
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Ge-----i~aLLG~NGAGKSTLLkiLaGLl~------------PtsG~I~i~ 990 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQ-----ITAFLGHNGAGKTTTLSILTGLLP------------PTSGTVLVG 990 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCc-----EEEEECCCCChHHHHHHHHhcCCC------------CCceEEEEC
Confidence 466778887773 457889999999888 8999999999999999 8877654 777874 6
Q ss_pred CcceeecCHHHHHH----HHHcCCccceeeehhh------hcCCCh----HHHHHHHhhccCChh
Q psy18088 104 GKAYHFVTRADMEE----RIAAGEFLEHAEFAAN------LYGTSQ----CGRQNGRNYLIFNTL 154 (166)
Q Consensus 104 G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn------~yG~~~----~~I~~ile~v~L~~~ 154 (166)
|.+... ...++.+ ..|...+.+..++.+| .+|.+. +.++++++.++|.+.
T Consensus 991 G~dI~~-~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~ 1054 (2272)
T TIGR01257 991 GKDIET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHK 1054 (2272)
T ss_pred CEECcc-hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh
Confidence 765321 1122222 2344445556666665 245543 345667777887654
No 329
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.29 E-value=4e-07 Score=81.46 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=40.1
Q ss_pred ceEEeeeccee----eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRT----CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+ ...++.++++.|++|+ +++|+||||||||||+ ++.+.
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge-----~~~l~G~NGsGKSTLl~~l~G~ 309 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGE-----ILGVAGLVGAGRTELVQALFGA 309 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCc-----EEEEeCCCCCCHHHHHHHHhCC
Confidence 57788888765 2357889999999888 8999999999999999 77665
No 330
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=3.3e-07 Score=74.85 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=38.4
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+++++++++.+. ..++.+.++.+++|+ +++|+||||||||||+ ++.+
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISMEIEEKS-----VVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeEEEeCCC-----EEEEECCCCCCHHHHHHHHhh
Confidence 455677777663 457788999999888 8999999999999999 7765
No 331
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=3.9e-07 Score=76.04 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=40.9
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||+|||||+ +|.+.
T Consensus 21 ~l~i~nl~~~~~~~~il~~vs~~i~~Ge-----~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 21 AMAAVNLTLGFAGKTVLDQVSMGFPARA-----VTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred EEEEeeEEEEECCEEEeeeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhcc
Confidence 567888888874 567889999998888 8999999999999999 77664
No 332
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.29 E-value=4.7e-07 Score=75.03 Aligned_cols=44 Identities=20% Similarity=0.029 Sum_probs=32.8
Q ss_pred eecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 35 LLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 35 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++.+. ..++.++++ +++|+ +++|+||||||||||+ ++.+...
T Consensus 5 ~~~~~y~~~~~~l~~i~~-i~~Ge-----~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 5 EPVHRYGPNSFKLHRLPV-PREGQ-----VLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CcceeecCcchhhhcCCC-CCCCC-----EEEEECCCCCCHHHHHHHHhCCcC
Confidence 4455542 246677773 77777 8999999999999999 7777654
No 333
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=2.9e-07 Score=77.88 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=45.9
Q ss_pred hhHHHHHH---hcCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 19 TKQSYIRE---NAGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 19 ~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++||-.- ...++.++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ +|.+.
T Consensus 31 ~~~~~~~~~~~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge-----~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 31 TRDEWTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKS-----VTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred hhhcccccccCCCceEEEEEEEEEeCCeeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 56666552 223677888887764 567888999998888 8999999999999999 66664
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.28 E-value=4.8e-07 Score=82.17 Aligned_cols=49 Identities=8% Similarity=-0.040 Sum_probs=40.0
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++.++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.-
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge-----~~~l~G~NGsGKSTLl~~l~G~~ 372 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSFKLPPGG-----IVGVIGPNGAGKSTLFRMITGQE 372 (552)
T ss_pred EEEEeeEEEEECCeeeeccceEEEcCCC-----EEEEECCCCCCHHHHHHHHcCCC
Confidence 566777777664 457888999999888 8999999999999999 776653
No 335
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.27 E-value=3.9e-07 Score=75.63 Aligned_cols=50 Identities=16% Similarity=0.024 Sum_probs=41.6
Q ss_pred cCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 28 AGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
..+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge-----~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNR-----VTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhc
Confidence 34678888888764 457788999999888 8999999999999999 77665
No 336
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=5.2e-07 Score=74.39 Aligned_cols=49 Identities=14% Similarity=0.050 Sum_probs=40.5
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge-----~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSK-----VTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCc-----EEEEECCCCCCHHHHHHHHhccc
Confidence 467778887764 357889999999888 8999999999999999 777653
No 337
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=4.4e-07 Score=75.59 Aligned_cols=48 Identities=13% Similarity=0.024 Sum_probs=40.5
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+.
T Consensus 20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge-----~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDVHLKIPAKK-----IIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred eEEEeeEEEEeCCeEEEeeeeeEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 677888888774 457889999999888 8999999999999999 77764
No 338
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=5.1e-07 Score=81.07 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=40.1
Q ss_pred ceEEeeeccee----eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRT----CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+ ...++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge-----~~~l~G~NGsGKSTLlk~i~Gl 311 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGE-----ILGIAGLVGAGRTELVQCLFGA 311 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCc-----EEEEeCCCCCCHHHHHHHHhCC
Confidence 57788888765 2457889999999888 8999999999999999 77665
No 339
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.26 E-value=5.4e-07 Score=83.28 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=40.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++.++++++.+. ..++.++++.|.+|+ +++|+||||||||||+ ++.+..
T Consensus 319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~l~G~NGsGKSTLlk~l~G~~ 369 (635)
T PRK11147 319 VFEMENVNYQIDGKQLVKDFSAQVQRGD-----KIALIGPNGCGKTTLLKLMLGQL 369 (635)
T ss_pred eEEEeeeEEEECCeEEEcCcEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCC
Confidence 567778887764 457888999998888 8999999999999999 776653
No 340
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.24 E-value=1e-06 Score=71.15 Aligned_cols=49 Identities=16% Similarity=0.057 Sum_probs=37.8
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++.+++-+.+. ..++...|+.-++|+ .|.|+|.|||||||++ .|+.+..
T Consensus 7 l~v~dlHK~~G~~eVLKGvSL~A~~Gd-----VisIIGsSGSGKSTfLRCiN~LE~ 57 (256)
T COG4598 7 LEVEDLHKRYGEHEVLKGVSLQANAGD-----VISIIGSSGSGKSTFLRCINFLEK 57 (256)
T ss_pred eehhHHHhhcccchhhcceeeecCCCC-----EEEEecCCCCchhHHHHHHHhhcC
Confidence 33445566664 556777887777777 8999999999999999 8887665
No 341
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.24 E-value=6.1e-07 Score=89.55 Aligned_cols=105 Identities=17% Similarity=0.154 Sum_probs=65.8
Q ss_pred eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
++.++|+|... ..++.++++.+++|+ +++|+||||||||||+ ++.+... ...|.+|+ +
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge-----~~aI~G~sGaGKSTLL~~Lag~~~---------~g~~~~G~I~i 825 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGT-----LTALMGASGAGKTTLLNVLAERVT---------TGVITGGDRLV 825 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEEECCE-----EEEEECCCCCCHHHHHHHHhCCCC---------CCCcceeEEEE
Confidence 46677777652 457889999988888 8999999999999999 6666431 00134565 3
Q ss_pred CCcceeecCHHHHHH----HHHcCCccceeeehhhh-cC--------CCh----HHHHHHHhhccCCh
Q psy18088 103 DGKAYHFVTRADMEE----RIAAGEFLEHAEFAANL-YG--------TSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn~-yG--------~~~----~~I~~ile~v~L~~ 153 (166)
+|++. +. .+.+ ..|++.+++..++.+|. ++ .+. +.++++++.++|.+
T Consensus 826 ~G~~~---~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~ 889 (1394)
T TIGR00956 826 NGRPL---DS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES 889 (1394)
T ss_pred CCEEC---Ch-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 66553 21 2222 23445566677777762 21 222 23566777777654
No 342
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.24 E-value=5.9e-07 Score=80.27 Aligned_cols=48 Identities=10% Similarity=-0.022 Sum_probs=38.6
Q ss_pred ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+..+.++++.. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 250 ~i~~~~l~~~~-~~~l~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 250 ILEVRNLTSLR-QPSIRDVSFDLHKGE-----ILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred EEEEeCccccc-CcccceeeEEEeCCc-----EEEEecCCCCCHHHHHHHHcCCC
Confidence 45666777653 347888999999888 8999999999999999 776654
No 343
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.23 E-value=4.3e-07 Score=75.56 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=31.6
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
..++.++++.+++|+ .++|+||+|||||||+ ++.+..
T Consensus 37 ~~il~~is~~i~~Ge-----~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 37 FFALDDISLKAYEGD-----VIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred eEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCc
Confidence 456778899999888 8999999999999999 777654
No 344
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.23 E-value=6.1e-07 Score=73.81 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=40.0
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge-----~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNK-----VTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence 566778887664 457889999999888 8999999999999999 77664
No 345
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=6.2e-07 Score=75.22 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=40.4
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+.
T Consensus 39 ~l~i~~l~~~~~~~~il~~is~~i~~Ge-----~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 39 VIEARDLNVFYGDEQALDDVSMDIPENQ-----VTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred eEEEEEEEEEECCEeeEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 567788887764 467889999999888 8999999999999999 77664
No 346
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.22 E-value=7.5e-07 Score=79.51 Aligned_cols=48 Identities=15% Similarity=-0.073 Sum_probs=40.4
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 260 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge-----~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 260 RIVLNNGVVSYNDRPILHNLSWQVNPGE-----HWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred eEEEeceEEEECCeeEEeeceEEEcCCC-----EEEEECCCCCCHHHHHHHHcCC
Confidence 677888887764 457889999999888 8999999999999999 76664
No 347
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=6e-07 Score=73.37 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=35.9
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++++++.+. ..++.++++.+.+|+ +++|+||||||||||+ ++.+.
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge-----~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 8 VKNLNLWYGSKQILFDINLDIYKRE-----VTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eeeEEEEECCeeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence 445555543 457788999998888 8999999999999999 77765
No 348
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.20 E-value=5e-07 Score=82.39 Aligned_cols=54 Identities=17% Similarity=0.078 Sum_probs=43.4
Q ss_pred HHhcCceEEeeecceeee----cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 25 RENAGITVRILLNYRTCI----SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
|-+..++.++++++.+.. .++.++++.+.+|+ +++|+||+|||||||+ ++.+..
T Consensus 16 ~~~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GE-----ivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 16 MYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGE-----IVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred ccccceeEEEEEEEecCCCccceEEeeeEEEEeCCC-----EEEEEcCCCCCHHHHHHHHhCCC
Confidence 555557888888766642 46888999998888 8999999999999999 777754
No 349
>PLN03073 ABC transporter F family; Provisional
Probab=98.19 E-value=8.5e-07 Score=83.40 Aligned_cols=49 Identities=20% Similarity=0.077 Sum_probs=40.1
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge-----~i~LvG~NGsGKSTLLk~L~Gll 559 (718)
T PLN03073 508 IISFSDASFGYPGGPLLFKNLNFGIDLDS-----RIAMVGPNGIGKSTILKLISGEL 559 (718)
T ss_pred eEEEEeeEEEeCCCCeeEeccEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCC
Confidence 567778887763 347888999999888 8999999999999999 776654
No 350
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.19 E-value=1.8e-06 Score=76.49 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=52.9
Q ss_pred eEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 31 TVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 31 ~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++.++.|-+ +.--+++++..+++|| ++-|+|.+||||||+. |+.++.. |.+||+ ||.
T Consensus 323 lelrnvrfay~~~~FhvgPiNl~ikrGe-----lvFliG~NGsGKST~~~LLtGL~~------------PqsG~I~ldg~ 385 (546)
T COG4615 323 LELRNVRFAYQDNAFHVGPINLTIKRGE-----LVFLIGGNGSGKSTLAMLLTGLYQ------------PQSGEILLDGK 385 (546)
T ss_pred eeeeeeeeccCcccceecceeeEEecCc-----EEEEECCCCCcHHHHHHHHhcccC------------CCCCceeECCc
Confidence 4555655544 3233566788889899 7999999999999999 8888876 999985 787
Q ss_pred ceeecCHHHHHHHHH
Q psy18088 106 AYHFVTRADMEERIA 120 (166)
Q Consensus 106 ~y~fvs~~~f~~~~~ 120 (166)
..-.-+.++++.++.
T Consensus 386 pV~~e~ledYR~LfS 400 (546)
T COG4615 386 PVSAEQLEDYRKLFS 400 (546)
T ss_pred cCCCCCHHHHHHHHH
Confidence 644445555665543
No 351
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.18 E-value=1e-06 Score=70.45 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=31.3
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--ccccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
.+++.+.|+.|..|| .++|-||||+|||||+ |-+.+
T Consensus 24 LpV~~~vslsV~aGE-----CvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 24 LPVLRNVSLSVNAGE-----CVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred eeeeeceeEEecCcc-----EEEeeCCCCCcHHHHHHHHHhcc
Confidence 567888999999999 6999999999999999 65554
No 352
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.6e-06 Score=74.34 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=33.2
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
+.+++++||.|++|| +++|+|.||||||++. ++..+|
T Consensus 18 v~av~~vs~~i~~GE-----~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 18 VKAVDGVSFELKKGE-----ILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred EEEEeceeEEEcCCc-----EEEEEcCCCCCHHHHHHHHHhccC
Confidence 678899999999999 8999999999999999 666665
No 353
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.17 E-value=2e-06 Score=79.35 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=57.5
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCC---CCCc--cCCcceeecCHHHH
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGP---RPGE--VDGKAYHFVTRADM 115 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p---~~ge--~~G~~y~fvs~~~f 115 (166)
..++.++++.+++|| +++|+||||||||||+ ++.+... + ..|+ ++|.+. +...+
T Consensus 38 ~~iL~~vs~~i~~Ge-----~~aI~G~sGsGKSTLL~~L~g~~~------------~~~~~~G~i~~~g~~~---~~~~~ 97 (617)
T TIGR00955 38 KHLLKNVSGVAKPGE-----LLAVMGSSGAGKTTLMNALAFRSP------------KGVKGSGSVLLNGMPI---DAKEM 97 (617)
T ss_pred cccccCCEEEEeCCe-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcceeEEEECCEEC---CHHHH
Confidence 457888998888888 8999999999999999 6665432 2 1344 355442 22233
Q ss_pred HH----HHHcCCccceeeehhhh-cC----C----Ch----HHHHHHHhhccCCh
Q psy18088 116 EE----RIAAGEFLEHAEFAANL-YG----T----SQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 116 ~~----~~~~~~fle~~~~~gn~-yG----~----~~----~~I~~ile~v~L~~ 153 (166)
.+ ..|++.+++..++.+|. ++ . +. +.++++++.++|.+
T Consensus 98 ~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 152 (617)
T TIGR00955 98 RAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK 152 (617)
T ss_pred hhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh
Confidence 22 24555566677777762 21 1 11 23566666777654
No 354
>PLN03211 ABC transporter G-25; Provisional
Probab=98.17 E-value=2.5e-07 Score=86.09 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=30.9
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
..++.++++.+++|| +++|+||||+|||||+ ++.+.
T Consensus 81 ~~iL~~vs~~i~~Ge-----~~aI~GpnGaGKSTLL~iLaG~ 117 (659)
T PLN03211 81 RTILNGVTGMASPGE-----ILAVLGPSGSGKSTLLNALAGR 117 (659)
T ss_pred CeeeeCCEEEEECCE-----EEEEECCCCCCHHHHHHHHhCC
Confidence 457788888888888 8999999999999999 77764
No 355
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.15 E-value=1.1e-06 Score=71.32 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=28.7
Q ss_pred eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088 41 CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 41 ~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
...++.++|+.|++|| +++|+||||||||||+
T Consensus 7 ~~~~l~~vsl~i~~Ge-----~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 7 REHNLKNVDVDIPRNK-----LVVITGVSGSGKSSLA 38 (226)
T ss_pred hhhccccceeecCCCc-----EEEEEcCCCCCHHHHH
Confidence 3567889999999998 8999999999999994
No 356
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.15 E-value=9.5e-07 Score=72.04 Aligned_cols=47 Identities=17% Similarity=0.057 Sum_probs=37.2
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++++++++.+. ..++.++++.+.+|+ +++|+||||+|||||+ ++.+.
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKNS-----VTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHhh
Confidence 44566666553 457888999998888 8999999999999999 77653
No 357
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.13 E-value=1.5e-06 Score=78.00 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=30.9
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.++.++++.+++|+ +++|+||||||||||+ ++.+..
T Consensus 266 ~~l~~vsl~i~~Ge-----~~~liG~NGsGKSTLl~~l~G~~ 302 (501)
T PRK10762 266 PGVNDVSFTLRKGE-----ILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred CCcccceEEEcCCc-----EEEEecCCCCCHHHHHHHHhCCC
Confidence 35788899998888 8999999999999999 776654
No 358
>PLN03073 ABC transporter F family; Provisional
Probab=98.12 E-value=1.1e-06 Score=82.55 Aligned_cols=49 Identities=16% Similarity=0.038 Sum_probs=42.0
Q ss_pred cCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 28 AGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..++.++++++.+. ..++.+.++.|..|+ .++|+||||||||||+ +|.+
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge-----~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAFGR-----HYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECCCC-----EEEEECCCCCCHHHHHHHHcC
Confidence 34788889998884 458889999998888 8999999999999999 7765
No 359
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.12 E-value=1.5e-06 Score=71.85 Aligned_cols=45 Identities=18% Similarity=0.065 Sum_probs=34.5
Q ss_pred Eeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 33 RILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 33 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.+.+++.+. ..++.+.++.+.+|+ +++|+||||+|||||+ ++.+.
T Consensus 11 ~~~~~~~~~~~~~l~~vs~~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 11 CKLDKIFYGNFMAVRDSHVPIRKNE-----ITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred EEeEEEEeCCEEEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHcc
Confidence 334444443 456778899988888 8999999999999999 77664
No 360
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.12 E-value=1.7e-06 Score=77.92 Aligned_cols=44 Identities=16% Similarity=0.068 Sum_probs=35.4
Q ss_pred ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++..++++. ..+.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 268 ~l~~~~l~~----~~l~~isl~i~~Ge-----~~~l~G~NGsGKSTLl~~i~Gl 312 (510)
T PRK15439 268 VLTVEDLTG----EGFRNISLEVRAGE-----ILGLAGVVGAGRTELAETLYGL 312 (510)
T ss_pred eEEEeCCCC----CCccceeEEEcCCc-----EEEEECCCCCCHHHHHHHHcCC
Confidence 455666653 25778899998888 8999999999999999 77665
No 361
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.11 E-value=1.8e-06 Score=77.46 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=30.9
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.++.++|+.|++|+ +++|+||||||||||+ ++.+..
T Consensus 267 ~~l~~isl~i~~Ge-----~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 267 GLREPISFSVRAGE-----IVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred CcccceeEEEeCCc-----EEEEEcCCCCCHHHHHHHHcCCC
Confidence 46788999999888 8999999999999999 666643
No 362
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.11 E-value=1.5e-06 Score=66.14 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=29.6
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.++.+.++.+.+|+ +++|+||+|+|||||+ ++.+.-
T Consensus 13 ~~l~~~~~~i~~g~-----~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 13 TALDNVSLTLKAGE-----IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred eeEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 46667788887777 8999999999999999 776644
No 363
>PLN02840 tRNA dimethylallyltransferase
Probab=98.11 E-value=5.4e-07 Score=79.99 Aligned_cols=53 Identities=11% Similarity=0.054 Sum_probs=41.4
Q ss_pred CCcEEEEEcCCCCChhhhc--ccccccc--------ceeeeEEeecCCCCCCccCCcceeecC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLD--------RFGFSVSHTTRGPRPGEVDGKAYHFVT 111 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~--------~f~~~v~~TTR~p~~ge~~G~~y~fvs 111 (166)
++.+|+|+||+|||||||. |...+.. .+...+..+|++|+..|.+++.||+++
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlid 82 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLID 82 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEe
Confidence 3458999999999999999 5555432 133456678999999999999998865
No 364
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.11 E-value=8.8e-07 Score=64.95 Aligned_cols=31 Identities=16% Similarity=0.007 Sum_probs=24.7
Q ss_pred CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cc
Q psy18088 44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FL 79 (166)
Q Consensus 44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li 79 (166)
++.+.++.++.++ +++|+||||||||||+ ++
T Consensus 4 aL~~vsl~i~~ge-----~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 4 SLHGVLVDVYGKV-----GVLITGDSGIGKTELALEL 35 (107)
T ss_pred EEEeeEEEEcCCE-----EEEEEcCCCCCHHHHHHHh
Confidence 3455666776666 8999999999999999 54
No 365
>PLN03140 ABC transporter G family member; Provisional
Probab=98.11 E-value=3.9e-06 Score=84.29 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=65.1
Q ss_pred ceEEeeecceee--------------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeec
Q psy18088 30 ITVRILLNYRTC--------------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTT 94 (166)
Q Consensus 30 ~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TT 94 (166)
...+++|+|.-. ..++.++++.+++|+ +++|+||||||||||+ ++.+... -
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge-----l~aL~G~sGaGKTTLL~~LaG~~~-~-------- 932 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGV-----LTALMGVSGAGKTTLMDVLAGRKT-G-------- 932 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCe-----EEEEECCCCCCHHHHHHHHcCCCC-C--------
Confidence 366788887742 246778888888777 8999999999999999 7777542 0
Q ss_pred CCCCCCc--cCCcceeecCHHHHHH----HHHcCCccceeeehhhh-c----C----CCh----HHHHHHHhhccCChh
Q psy18088 95 RGPRPGE--VDGKAYHFVTRADMEE----RIAAGEFLEHAEFAANL-Y----G----TSQ----CGRQNGRNYLIFNTL 154 (166)
Q Consensus 95 R~p~~ge--~~G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn~-y----G----~~~----~~I~~ile~v~L~~~ 154 (166)
.+.+|+ ++|.+. +...+.+ ..|.+.+.+..++.++. + . .+. +.++++++.++|.+.
T Consensus 933 -g~~~G~I~inG~~~---~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~ 1007 (1470)
T PLN03140 933 -GYIEGDIRISGFPK---KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL 1007 (1470)
T ss_pred -CcccceEEECCccC---ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH
Confidence 012354 255431 2222222 23445566666776662 2 1 122 235677777777653
No 366
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.11 E-value=2.8e-06 Score=77.38 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=41.3
Q ss_pred ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--ccccccc
Q psy18088 30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~ 84 (166)
++...+++.++. +.++.++||.|.+|| +++|+|-|||||||+. ++..+|.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE-----~lgIvGESGsGKSt~a~~i~gll~~ 61 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGE-----ILGIVGESGSGKSTLALALMGLLPE 61 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCc-----EEEEEcCCCCCHHHHHHHHhccCCC
Confidence 667777777663 457899999999999 8999999999999999 6666653
No 367
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.10 E-value=3.1e-06 Score=78.52 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=40.5
Q ss_pred ceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.+.++.+++|| +++|+||||||||||+ ++.+...
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge-----~~~l~G~nGsGKSTLl~~i~Gl~~ 59 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGE-----MVAIVGASGSGKSTLMNILGCLDK 59 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC
Confidence 566778877662 357888999998888 8999999999999999 7777653
No 368
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.09 E-value=2.8e-06 Score=76.59 Aligned_cols=31 Identities=13% Similarity=0.024 Sum_probs=27.8
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
..++.++++.+++|+ +++|+||||||||||+
T Consensus 19 ~~vL~~Vsl~i~~GE-----iv~L~G~SGsGKSTLL 49 (504)
T TIGR03238 19 ERILVKFNKELPSSS-----LLFLCGSSGDGKSEIL 49 (504)
T ss_pred HHHHhCCceeecCCC-----EEEEECCCCCCHHHHH
Confidence 456778899998888 8999999999999999
No 369
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.09 E-value=2.1e-06 Score=69.28 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
|.+++|+||||||||||+ ++.+...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 448999999999999999 7777543
No 370
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.08 E-value=3.9e-06 Score=84.50 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=60.5
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
..+++++++.+. ..++.++++.+++|+ .++|+||+|||||||+ ++.+.-. |.+|++ +
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~-----~v~IvG~~GsGKSTLl~~l~g~~~------------~~~G~i~~~ 698 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGA-----LVAVVGQVGCGKSSLLSALLAEMD------------KVEGHVHMK 698 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCc------------cCCcEEEEC
Confidence 466677776653 347888899998888 8999999999999999 6655443 667764 4
Q ss_pred C-cceeecCHHHHHHHHHcCCccceeeehhh-hcCCC--hHHHHHHHhhccC
Q psy18088 104 G-KAYHFVTRADMEERIAAGEFLEHAEFAAN-LYGTS--QCGRQNGRNYLIF 151 (166)
Q Consensus 104 G-~~y~fvs~~~f~~~~~~~~fle~~~~~gn-~yG~~--~~~I~~ile~v~L 151 (166)
| ..| ++.+ ..+..+++.+| .+|.+ .+..+++++.+.+
T Consensus 699 g~i~y--v~Q~---------~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l 739 (1522)
T TIGR00957 699 GSVAY--VPQQ---------AWIQNDSLRENILFGKALNEKYYQQVLEACAL 739 (1522)
T ss_pred CEEEE--EcCC---------ccccCCcHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 4 222 2222 23445677777 44533 3445555555443
No 371
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.05 E-value=2.1e-06 Score=73.77 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=40.2
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+.++++++++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.+.
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge-----~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNK-----VTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcc
Confidence 4677888887663 357889999999888 8999999999999999 66554
No 372
>PRK13409 putative ATPase RIL; Provisional
Probab=98.04 E-value=2.2e-06 Score=79.00 Aligned_cols=49 Identities=24% Similarity=0.124 Sum_probs=34.4
Q ss_pred ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++.+++++.+....+.+.++.+++|| +++|+||||||||||+ ++.+..
T Consensus 340 ~l~~~~ls~~~~~~~l~~~s~~i~~Ge-----iv~l~G~NGsGKSTLlk~L~Gl~ 389 (590)
T PRK13409 340 LVEYPDLTKKLGDFSLEVEGGEIYEGE-----VIGIVGPNGIGKTTFAKLLAGVL 389 (590)
T ss_pred EEEEcceEEEECCEEEEecceEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 455556655443222455666777777 8999999999999999 777654
No 373
>PRK13409 putative ATPase RIL; Provisional
Probab=98.04 E-value=3.6e-06 Score=77.55 Aligned_cols=35 Identities=17% Similarity=-0.003 Sum_probs=27.4
Q ss_pred CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++.+++ .+++|+ +++|+||||+|||||+ ++.+...
T Consensus 89 ~L~~l~-~i~~Ge-----v~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 89 KLYGLP-IPKEGK-----VTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred eEecCC-cCCCCC-----EEEEECCCCCCHHHHHHHHhCCcc
Confidence 455555 566666 8999999999999999 7777643
No 374
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.03 E-value=1.4e-06 Score=70.96 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=37.5
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+..+++.+.+. .++..+.|+.|++|| ++.|+||+|+||||.+ ++-++-
T Consensus 5 L~a~~l~K~y~kr~Vv~~Vsl~v~~GE-----iVGLLGPNGAGKTT~Fymi~Glv 54 (243)
T COG1137 5 LVAENLAKSYKKRKVVNDVSLEVNSGE-----IVGLLGPNGAGKTTTFYMIVGLV 54 (243)
T ss_pred EEehhhhHhhCCeeeeeeeeEEEcCCc-----EEEEECCCCCCceeEEEEEEEEE
Confidence 44456666664 556677899999999 8999999999999999 666654
No 375
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.99 E-value=8e-06 Score=69.22 Aligned_cols=103 Identities=19% Similarity=0.150 Sum_probs=64.8
Q ss_pred eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHHHH
Q psy18088 41 CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADMEE 117 (166)
Q Consensus 41 ~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f~~ 117 (166)
...+..++||.|.+|+ ++.++||+|+||||++ ++.+.-- |.+|. ++|.+ =|-.++++.+
T Consensus 36 ~~~AVqdisf~IP~G~-----ivgflGaNGAGKSTtLKmLTGll~------------p~~G~v~V~G~~-Pf~~~~~~~~ 97 (325)
T COG4586 36 SIEAVQDISFEIPKGE-----IVGFLGANGAGKSTTLKMLTGLLL------------PTSGKVRVNGKD-PFRRREEYLR 97 (325)
T ss_pred hhhhhheeeeecCCCc-----EEEEEcCCCCcchhhHHHHhCccc------------cCCCeEEecCcC-cchhHHHHHH
Confidence 3456668888888777 8999999999999999 8887665 88886 46643 1224444444
Q ss_pred HH----HcCCccceee-------ehhhhcCCChHH----HHHHHhhccCChhHHhhCCc
Q psy18088 118 RI----AAGEFLEHAE-------FAANLYGTSQCG----RQNGRNYLIFNTLAAKCLPT 161 (166)
Q Consensus 118 ~~----~~~~fle~~~-------~~gn~yG~~~~~----I~~ile~v~L~~~~~~~l~~ 161 (166)
.+ -+..-+.|.- +....|-++.+. .+...++++|++......+.
T Consensus 98 ~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~ 156 (325)
T COG4586 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRK 156 (325)
T ss_pred HHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhh
Confidence 22 1112233322 223357777644 44555688888766655543
No 376
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.98 E-value=2.5e-06 Score=69.11 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=37.3
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+.+....||.++++. .++|+|.+|||||||+ ++++.-. |.+||+ ||.
T Consensus 26 ~~AV~~vSFtL~~~Q-----TlaiIG~NGSGKSTLakMlaGmi~------------PTsG~il~n~~ 75 (267)
T COG4167 26 VEAVKPVSFTLREGQ-----TLAIIGENGSGKSTLAKMLAGMIE------------PTSGEILINDH 75 (267)
T ss_pred hhcccceEEEecCCc-----EEEEEccCCCcHhHHHHHHhcccC------------CCCceEEECCc
Confidence 445667889988887 8999999999999999 7776543 778874 654
No 377
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.98 E-value=6e-06 Score=75.34 Aligned_cols=50 Identities=20% Similarity=0.100 Sum_probs=41.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++..++++..+. ..++.+.++.+.+|+ -|+|||++|+|||||+ +|.+.-.
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~-----riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGE-----RIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCC-----EEEEECCCCCCHHHHHHHHcCCCc
Confidence 456677787775 667889999998888 7999999999999999 7776443
No 378
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.96 E-value=2.8e-06 Score=66.48 Aligned_cols=98 Identities=12% Similarity=0.021 Sum_probs=49.0
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeE-------EeecCCCCCCccCCcceeecCHHHHHHHH--------HcC
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSV-------SHTTRGPRPGEVDGKAYHFVTRADMEERI--------AAG 122 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v-------~~TTR~p~~ge~~G~~y~fvs~~~f~~~~--------~~~ 122 (166)
+++++|+||||||||||+ |+....- -...| .|||+...--..++ +-..+|.+-|..+- -..
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~-~t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~~l~~~~~~~l~~ 112 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQ-KTGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSFGLWHIDPEELAQ 112 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS-----S--------------SEEEEEETT-SEEEECSHHHHT--GCCS-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcch-hhhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCccccccCCHHHHHH
Confidence 469999999999999999 6654211 11122 36776543333321 12234444443321 112
Q ss_pred Cccceeeehhh-------hcCCChHHHHHHHhhccCChhHHhhC
Q psy18088 123 EFLEHAEFAAN-------LYGTSQCGRQNGRNYLIFNTLAAKCL 159 (166)
Q Consensus 123 ~fle~~~~~gn-------~yG~~~~~I~~ile~v~L~~~~~~~l 159 (166)
.|.|...+.+. +..-+.++|+++++.=.+.+...+.+
T Consensus 113 ~F~e~~~~~~~CkF~~C~H~~Ep~CaV~~av~~g~i~~~Ry~~Y 156 (161)
T PF03193_consen 113 YFPEFRPLAGQCKFRDCTHIHEPGCAVKAAVENGEISPERYESY 156 (161)
T ss_dssp CSGGGHHHTTHSSSTTTTSSSSTT-HHHHHHHTTSS-HHHHHHH
T ss_pred HHHHhccccCCCCccCCCCCCCCCChHHHHHHCCCCcHHHHHHH
Confidence 45666555443 34566789999988545555555443
No 379
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.95 E-value=1.5e-06 Score=74.37 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=43.2
Q ss_pred EEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcceeecCHH--HHHHHHHcCCccceeeehhh-hc---
Q psy18088 65 HVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRA--DMEERIAAGEFLEHAEFAAN-LY--- 135 (166)
Q Consensus 65 LiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~y--- 135 (166)
|+||||||||||+ +|.++.. |.+|++ +|.+....+.. .+....+...+..+.++.+| .|
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~------------p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 68 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ------------PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLK 68 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC------------CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHh
Confidence 5899999999999 7777654 666653 55443211111 01112344445555666666 22
Q ss_pred --CCCh----HHHHHHHhhccCCh
Q psy18088 136 --GTSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 136 --G~~~----~~I~~ile~v~L~~ 153 (166)
+.+. +.++++++.+++.+
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~l~~ 92 (325)
T TIGR01187 69 MRKVPRAEIKPRVLEALRLVQLEE 92 (325)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCcc
Confidence 3332 23556666777754
No 380
>KOG0054|consensus
Probab=97.95 E-value=7.9e-06 Score=81.15 Aligned_cols=107 Identities=21% Similarity=0.137 Sum_probs=77.5
Q ss_pred CceEEeeec--ceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 29 GITVRILLN--YRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 29 ~~~~~~~~~--~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
|-.++++++ |++. ..++.++++.++.+| -|+|+|-+|||||||. -+=+.-+ |.+|+ +
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~e-----KVGIVGRTGaGKSSL~~aLFRl~e------------~~~G~I~I 1199 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGE-----KVGIVGRTGAGKSSLILALFRLVE------------PAEGEILI 1199 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCc-----eEEEeCCCCCCHHHHHHHHHHhcC------------ccCCeEEE
Confidence 456666666 4444 678999999999999 8999999999999999 3333333 77787 5
Q ss_pred CCcceeecCHHHHHH---HHHcCCccceeeehhhhcCC---ChHHHHHHHhhccCC
Q psy18088 103 DGKAYHFVTRADMEE---RIAAGEFLEHAEFAANLYGT---SQCGRQNGRNYLIFN 152 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~---~~~~~~fle~~~~~gn~yG~---~~~~I~~ile~v~L~ 152 (166)
||+|..-+.-.+.+. .+.|+..+..++++-|.-.. +.++|=++++.+.|-
T Consensus 1200 DgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk 1255 (1381)
T KOG0054|consen 1200 DGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLK 1255 (1381)
T ss_pred cCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChH
Confidence 999876666666655 36788899999999996443 345555566544443
No 381
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.88 E-value=2.8e-05 Score=62.64 Aligned_cols=46 Identities=15% Similarity=-0.004 Sum_probs=33.9
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+....+++-+. ..--.+.||.+.+|| ++.|+|.||||||||+ .++.
T Consensus 7 L~V~~lsk~Yg~~~gc~~vsF~l~PGe-----VLgiVGESGSGKtTLL~~is~ 54 (258)
T COG4107 7 LSVSGLSKLYGPGKGCRDVSFDLYPGE-----VLGIVGESGSGKTTLLKCISG 54 (258)
T ss_pred eeehhhhhhhCCCcCccccceeecCCc-----EEEEEecCCCcHHhHHHHHhc
Confidence 33445555553 233457888998888 8999999999999999 6655
No 382
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.88 E-value=7.3e-06 Score=74.80 Aligned_cols=47 Identities=17% Similarity=-0.026 Sum_probs=38.0
Q ss_pred ceEEeeecceeee--cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 30 ITVRILLNYRTCI--SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 30 ~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..+++++++.+.. .++.+.+|.|++|+ -|+|+||+|+|||||+ ++.+
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~~i~~g~-----riaiiG~NG~GKSTLlk~l~g 370 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSFRIDRGD-----RIAIVGPNGAGKSTLLKLLAG 370 (530)
T ss_pred eEEEeccccccCCCceeecCceEEecCCC-----EEEEECCCCCCHHHHHHHHhh
Confidence 4566677777743 47788999999888 8999999999999999 6644
No 383
>PLN03140 ABC transporter G family member; Provisional
Probab=97.88 E-value=2.7e-06 Score=85.39 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=30.8
Q ss_pred eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 41 CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 41 ~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
...++.++++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 177 ~~~IL~~vs~~i~~Ge-----~~~llGpnGSGKSTLLk~LaG~ 214 (1470)
T PLN03140 177 KLTILKDASGIIKPSR-----MTLLLGPPSSGKTTLLLALAGK 214 (1470)
T ss_pred cceeccCCeEEEeCCe-----EEEEEcCCCCCHHHHHHHHhCC
Confidence 3557788888888777 8999999999999999 66664
No 384
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.84 E-value=6.8e-06 Score=70.07 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceeeeEE-------eecCCCCCCccC---------C---cceeecCHHHHHH
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVS-------HTTRGPRPGEVD---------G---KAYHFVTRADMEE 117 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~-------~TTR~p~~ge~~---------G---~~y~fvs~~~f~~ 117 (166)
.+++.+++|+||+|||||+ |..... .-...|| ||||..+--.++ | .+++.++.++...
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~-~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~ 241 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELN-QKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQ 241 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhh-hhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHH
Confidence 4669999999999999999 554322 2233333 677765432221 1 1333456666554
Q ss_pred HHHcCCccceeeehhh-------hcCCChHHHHHHHhh
Q psy18088 118 RIAAGEFLEHAEFAAN-------LYGTSQCGRQNGRNY 148 (166)
Q Consensus 118 ~~~~~~fle~~~~~gn-------~yG~~~~~I~~ile~ 148 (166)
.|.|+.++.+. +-+-|.++++++++.
T Consensus 242 -----~F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~ 274 (301)
T COG1162 242 -----AFPEFAELARQCKFRDCTHTHEPGCAVKAAVEE 274 (301)
T ss_pred -----HhHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHc
Confidence 34444444322 455677889988874
No 385
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.83 E-value=2.4e-06 Score=72.85 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=38.3
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEEee-----------cCCCCCCccCCcceeecC
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHT-----------TRGPRPGEVDGKAYHFVT 111 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~T-----------TR~p~~ge~~G~~y~fvs 111 (166)
+++|+|+||+|||||.|. |... ++.+|+.+ |.+|+..|..++.||+++
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~----~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid 64 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG----KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVD 64 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh----CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeee
Confidence 348999999999999999 5544 24677755 999988888888888764
No 386
>KOG0054|consensus
Probab=97.81 E-value=1.8e-05 Score=78.78 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=60.7
Q ss_pred CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHHHHHH
Q psy18088 44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADMEERI 119 (166)
Q Consensus 44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f~~~~ 119 (166)
.+.++++.|++|+ .++|+||.|||||+|+ ++.+.+ ..+|+ ++|. .-++++.
T Consensus 536 tL~dIn~~i~~G~-----lvaVvG~vGsGKSSLL~AiLGEm~-------------~~sG~v~v~gs-iaYv~Q~------ 590 (1381)
T KOG0054|consen 536 TLKDINFEIKKGQ-----LVAVVGPVGSGKSSLLSAILGEMP-------------KLSGSVAVNGS-VAYVPQQ------ 590 (1381)
T ss_pred cccceeEEecCCC-----EEEEECCCCCCHHHHHHHHhcCcc-------------cccceEEEcCe-EEEeccc------
Confidence 5677788888887 8999999999999999 887776 45565 3553 2234433
Q ss_pred HcCCccceeeehhh-hcCCCh--HHHHHHHhhccCChh
Q psy18088 120 AAGEFLEHAEFAAN-LYGTSQ--CGRQNGRNYLIFNTL 154 (166)
Q Consensus 120 ~~~~fle~~~~~gn-~yG~~~--~~I~~ile~v~L~~~ 154 (166)
..+..+++++| .+|.+. +.=+++++.+.|++.
T Consensus 591 ---pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~D 625 (1381)
T KOG0054|consen 591 ---PWIQNGTVRENILFGSPYDEERYDKVIKACALKKD 625 (1381)
T ss_pred ---cHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhH
Confidence 45777899999 788764 456778887776654
No 387
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.80 E-value=1.2e-05 Score=80.85 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=30.1
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
.++.++++.+++|+ +++|+||+|||||||+ ++.+.-.
T Consensus 440 ~~l~~i~l~i~~G~-----~~~I~G~~GsGKSTLl~~l~G~~~ 477 (1490)
T TIGR01271 440 PVLKNISFKLEKGQ-----LLAVAGSTGSGKSSLLMMIMGELE 477 (1490)
T ss_pred cceeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 35678888888877 8999999999999999 6665443
No 388
>KOG0061|consensus
Probab=97.76 E-value=1.6e-05 Score=73.72 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=46.2
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHHHH
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADMEE 117 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f~~ 117 (166)
..++.+++...++|| +.+|+||||||||||+ |..+.+.. ....|+ +||+. .+...+..
T Consensus 43 k~iL~~vsg~~~~Ge-----l~AimG~SGsGKtTLL~~Lagr~~~~----------~~~~G~ilvNG~~---~~~~~~~~ 104 (613)
T KOG0061|consen 43 KTILKGVSGTAKPGE-----LLAIMGPSGSGKTTLLNALAGRLNGG----------LKLSGEILLNGRP---RDSRSFRK 104 (613)
T ss_pred ceeeeCcEEEEecCe-----EEEEECCCCCCHHHHHHHHhccccCC----------CcceEEEEECCcc---Cchhhhhh
Confidence 556777766666565 8999999999999999 55554420 012343 35532 23444443
Q ss_pred H----HHcCCccceeeehhh
Q psy18088 118 R----IAAGEFLEHAEFAAN 133 (166)
Q Consensus 118 ~----~~~~~fle~~~~~gn 133 (166)
. .|.+.++...++.+.
T Consensus 105 ~s~yV~QdD~l~~~LTV~Et 124 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRET 124 (613)
T ss_pred eeEEEcccccccccccHHHH
Confidence 2 355667777777765
No 389
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.73 E-value=5.8e-05 Score=69.72 Aligned_cols=103 Identities=20% Similarity=0.139 Sum_probs=63.6
Q ss_pred ceEEeeeccee--eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCccCCcc
Q psy18088 30 ITVRILLNYRT--CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVDGKA 106 (166)
Q Consensus 30 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~~G~~ 106 (166)
...+++++-.. ....+.+.++.|++|+ -+.|.||||||||||+ .++++-.-....+.. | .+.+
T Consensus 392 ~i~~~nl~l~~p~~~~ll~~l~~~v~~G~-----~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~----P-----~~~~ 457 (604)
T COG4178 392 GITLENLSLRTPDGQTLLSELNFEVRPGE-----RLLITGESGAGKTSLLRALAGLWPWGSGRISM----P-----ADSA 457 (604)
T ss_pred eeEEeeeeEECCCCCeeeccceeeeCCCC-----EEEEECCCCCCHHHHHHHHhccCccCCCceec----C-----CCCc
Confidence 45555555444 2345677788888888 8999999999999999 777754211111111 1 1223
Q ss_pred eeecCHHHHHHHHHcCCccceeeehhh-hcC-----CChHHHHHHHhhccCChhH
Q psy18088 107 YHFVTRADMEERIAAGEFLEHAEFAAN-LYG-----TSQCGRQNGRNYLIFNTLA 155 (166)
Q Consensus 107 y~fvs~~~f~~~~~~~~fle~~~~~gn-~yG-----~~~~~I~~ile~v~L~~~~ 155 (166)
..|+++ ..|++.++..+- .|. .+.+++.+++..|+|++..
T Consensus 458 ~lflpQ---------~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~ 503 (604)
T COG4178 458 LLFLPQ---------RPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLA 503 (604)
T ss_pred eEEecC---------CCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHH
Confidence 344433 356666666554 343 4557788888888887543
No 390
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.71 E-value=2.7e-05 Score=62.74 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=33.5
Q ss_pred CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce
Q psy18088 44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY 107 (166)
Q Consensus 44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y 107 (166)
-+.+.|..|..|| ++=++||+|||||||+ -+++.- |.+|++ +|.+.
T Consensus 14 RL~plS~qv~aGe-----~~HliGPNGaGKSTLLA~lAGm~-------------~~sGsi~~~G~~l 62 (248)
T COG4138 14 RLGPLSGEVRAGE-----ILHLVGPNGAGKSTLLARMAGMT-------------SGSGSIQFAGQPL 62 (248)
T ss_pred cccccccccccce-----EEEEECCCCccHHHHHHHHhCCC-------------CCCceEEECCcch
Confidence 3456677777777 8999999999999999 555543 456764 67654
No 391
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.70 E-value=6.9e-05 Score=66.73 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=62.3
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCcc--CCcceeecCHHHHHH
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVTRADMEE 117 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs~~~f~~ 117 (166)
..+.+++|+.+++|+ .+.|+|.||||||||- |+...+. .|++ +|.+..-.+..++..
T Consensus 300 ~~AVd~isl~L~~gq-----TlGlVGESGSGKsTlG~allrL~~s--------------~G~I~F~G~~i~~~~~~~mrp 360 (534)
T COG4172 300 LRAVDGISLTLRRGQ-----TLGLVGESGSGKSTLGLALLRLIPS--------------QGEIRFDGQDIDGLSRKEMRP 360 (534)
T ss_pred eEEeccceeEecCCC-----eEEEEecCCCCcchHHHHHHhhcCc--------------CceEEECCccccccChhhhhh
Confidence 455678889999888 8999999999999999 6655542 3653 566655555555544
Q ss_pred HHHcCC---------ccceeeehh---h----h-cCCCh----HHHHHHHhhccCChhHHhhCCccC
Q psy18088 118 RIAAGE---------FLEHAEFAA---N----L-YGTSQ----CGRQNGRNYLIFNTLAAKCLPTVF 163 (166)
Q Consensus 118 ~~~~~~---------fle~~~~~g---n----~-yG~~~----~~I~~ile~v~L~~~~~~~l~~~~ 163 (166)
+...=. +-+-.++.. . + -+.+. ..+.++++-++|++..+.++++=|
T Consensus 361 lR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEF 427 (534)
T COG4172 361 LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEF 427 (534)
T ss_pred hhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCccc
Confidence 322211 111111110 0 0 12222 345556667899998888776644
No 392
>PLN02748 tRNA dimethylallyltransferase
Probab=97.67 E-value=2.3e-05 Score=70.54 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=37.7
Q ss_pred CCcEEEEEcCCCCChhhhc--ccccccc--------ceeeeEEeecCCCCCCccCCcceeecC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLD--------RFGFSVSHTTRGPRPGEVDGKAYHFVT 111 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~--------~f~~~v~~TTR~p~~ge~~G~~y~fvs 111 (166)
.+++|+|+||+|||||+|. |...+.. -+..-....|.+|...|..|+.||.++
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid 83 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLG 83 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEe
Confidence 3558999999999999999 5444331 011223345999988888998887654
No 393
>KOG0059|consensus
Probab=97.67 E-value=3.8e-05 Score=73.82 Aligned_cols=112 Identities=16% Similarity=0.098 Sum_probs=71.9
Q ss_pred ceEEeeecceeeec--CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088 30 ITVRILLNYRTCIS--ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG 104 (166)
Q Consensus 30 ~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G 104 (166)
..+.+++++.++.. +..+.++.|+++| .+++.||+|+||||++ ++.+.-. |+.|+ ++|
T Consensus 564 ~~~~~~L~k~y~~~~~Av~~ls~~V~~ge-----cfgLLG~NGAGKtT~f~mltG~~~------------~t~G~a~i~g 626 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDGAVRGLSFAVPPGE-----CFGLLGVNGAGKTTTFKMLTGETK------------PTSGEALIKG 626 (885)
T ss_pred eEEEcceeeeecchhhhhcceEEEecCCc-----eEEEecCCCCCchhhHHHHhCCcc------------CCcceEEEec
Confidence 56666777666533 7889999999999 6999999999999999 6666554 77786 355
Q ss_pred cceee-cCHHH----HHHHHHcCCccceeeehhh------hcCCChHHH----HHHHhhccCChhHHhh
Q psy18088 105 KAYHF-VTRAD----MEERIAAGEFLEHAEFAAN------LYGTSQCGR----QNGRNYLIFNTLAAKC 158 (166)
Q Consensus 105 ~~y~f-vs~~~----f~~~~~~~~fle~~~~~gn------~yG~~~~~I----~~ile~v~L~~~~~~~ 158 (166)
.+... .+.++ +..-.|.+.+.+..+-.++ ..|++..++ ++.++.++|.+.+-+.
T Consensus 627 ~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~ 695 (885)
T KOG0059|consen 627 HDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ 695 (885)
T ss_pred CccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc
Confidence 54321 11111 2223444555555554443 467776444 4445567777766554
No 394
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.64 E-value=3.3e-05 Score=59.95 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCChhhhc--cccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
+++|+|.|||||||||+. |....+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 568999999999999999 555544
No 395
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.58 E-value=6.1e-05 Score=62.15 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=43.2
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHH
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRAD 114 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~ 114 (166)
.+++...++.+.+++ |++|+|-+|+|||||+ .++++-. |..|. ++|++..-.+...
T Consensus 19 k~~l~~~sL~I~~g~-----FvtViGsNGAGKSTlln~iaG~l~------------~t~G~I~Idg~dVtk~~~~~ 77 (263)
T COG1101 19 KRALNGLSLEIAEGD-----FVTVIGSNGAGKSTLLNAIAGDLK------------PTSGQILIDGVDVTKKSVAK 77 (263)
T ss_pred HHHHhcCceeecCCc-----eEEEEcCCCccHHHHHHHhhCccc------------cCCceEEECceecccCCHHH
Confidence 556777888887777 9999999999999999 7777654 77886 4887765444443
No 396
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.53 E-value=3.5e-05 Score=77.23 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=30.6
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
..++.+.++.+++|+ +++|+||||||||||+ ++.+.
T Consensus 74 ~~iL~~vs~~i~~Ge-----~~aIlG~nGsGKSTLLk~LaG~ 110 (1394)
T TIGR00956 74 FDILKPMDGLIKPGE-----LTVVLGRPGSGCSTLLKTIASN 110 (1394)
T ss_pred ceeeeCCEEEEECCE-----EEEEECCCCCCHHHHHHHHhCC
Confidence 456788888888888 8999999999999999 66664
No 397
>PLN02165 adenylate isopentenyltransferase
Probab=97.53 E-value=3.3e-05 Score=66.88 Aligned_cols=50 Identities=14% Similarity=-0.027 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCCChhhhc-ccc-ccccc--------eeeeEEeecCCCCCCccCCccee
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLR-TVLDR--------FGFSVSHTTRGPRPGEVDGKAYH 108 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~-~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~ 108 (166)
.+++++|+||+|||||||. .++ .+... +.......|.+|...+..|..||
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hh 101 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHH 101 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChh
Confidence 3558999999999999999 444 33311 11223345777766666666543
No 398
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.46 E-value=4.8e-05 Score=54.80 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.9
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+|+|.|||||||||+. .++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999 4444
No 399
>PRK08118 topology modulation protein; Reviewed
Probab=97.46 E-value=3.8e-05 Score=59.78 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
-|+|+||+|||||||. .+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999 5554
No 400
>PTZ00243 ABC transporter; Provisional
Probab=97.39 E-value=5.7e-05 Score=76.42 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=29.0
Q ss_pred CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++.++++.+++|+ +++|+||+|||||||+ ++.+.-
T Consensus 675 iL~~isl~i~~G~-----~~~IiG~nGsGKSTLL~~i~G~~ 710 (1560)
T PTZ00243 675 LLRDVSVSVPRGK-----LTVVLGATGSGKSTLLQSLLSQF 710 (1560)
T ss_pred eEeeeEEEECCCC-----EEEEECCCCCcHHHHHHHHhcCC
Confidence 5667788888777 8999999999999999 665543
No 401
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.39 E-value=7e-05 Score=59.69 Aligned_cols=22 Identities=18% Similarity=-0.194 Sum_probs=18.5
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|+||||||||||+ .+..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 4443
No 402
>KOG0927|consensus
Probab=97.39 E-value=0.00019 Score=65.63 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=21.7
Q ss_pred cCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 58 HFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 58 ~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+...-+++|||+|+|||||+ |+-+.-.
T Consensus 414 d~~srvAlVGPNG~GKsTLlKl~~gdl~ 441 (614)
T KOG0927|consen 414 DLDSRVALVGPNGAGKSTLLKLITGDLQ 441 (614)
T ss_pred CcccceeEecCCCCchhhhHHHHhhccc
Confidence 34458999999999999999 7766554
No 403
>KOG0060|consensus
Probab=97.39 E-value=0.00019 Score=66.09 Aligned_cols=34 Identities=29% Similarity=0.281 Sum_probs=27.1
Q ss_pred CCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.++.++.|.+|. -+.|.||||||||+|+ .++++-
T Consensus 451 ie~Ls~~V~~g~-----~LLItG~sG~GKtSLlRvlggLW 485 (659)
T KOG0060|consen 451 IENLSLEVPSGQ-----NLLITGPSGCGKTSLLRVLGGLW 485 (659)
T ss_pred eeeeeeEecCCC-----eEEEECCCCCchhHHHHHHhccc
Confidence 445666666665 8999999999999999 777754
No 404
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=4.1e-05 Score=65.61 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=37.7
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEEee-----------cCCCCCCccCCcceeecC
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHT-----------TRGPRPGEVDGKAYHFVT 111 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~T-----------TR~p~~ge~~G~~y~fvs 111 (166)
.++++|+||++||||.|. |...+.. .+|+.+ |.+|...|..|+.||.++
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~---eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliD 64 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGG---EIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLID 64 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCC---cEEecchhhhcCCCcccCCCCCHHHHcCCCEEEec
Confidence 458999999999999999 7766654 455543 888988888888776543
No 405
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.38 E-value=0.0001 Score=60.75 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEE-------eecCCCCCCccC--------Cc---ceeecCHHHHHHHH
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVS-------HTTRGPRPGEVD--------GK---AYHFVTRADMEERI 119 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~-------~TTR~p~~ge~~--------G~---~y~fvs~~~f~~~~ 119 (166)
++.++++|+||+|||||+ |+.... .-...++ ||||....-..+ |. +...++.+++..
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~-~~t~~i~~~~~~G~hTT~~~~l~~l~~~~liDtPG~~~~~l~~~~~~~~~~-- 196 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVK-QQVNDISSKLGLGKHTTTHVELFHFHGGLIADTPGFNEFGLWHLEPEQLTQ-- 196 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhh-ccccceeccCCCCCCcCCceEEEEcCCcEEEeCCCccccCCCCCCHHHHHH--
Confidence 458999999999999999 554422 1122333 577755322222 11 112233333332
Q ss_pred HcCCccceeeehh-----h--hcCCChHHHHHHHhhccCChhHHhhCCc
Q psy18088 120 AAGEFLEHAEFAA-----N--LYGTSQCGRQNGRNYLIFNTLAAKCLPT 161 (166)
Q Consensus 120 ~~~~fle~~~~~g-----n--~yG~~~~~I~~ile~v~L~~~~~~~l~~ 161 (166)
.|.|...+.+ | +-.-|.++|+++++.=.+.+...+.+..
T Consensus 197 ---~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~~g~i~~~ry~~y~~ 242 (245)
T TIGR00157 197 ---GFVEFRDYLGECKFRDCLHQSEPGCAVRQAVEQGEISEWRYENYLK 242 (245)
T ss_pred ---hCHHHHHHhCCCCCCCCccCCCCCChHHHHHHcCCCCHHHHHHHHH
Confidence 3333333322 2 4456779999998865556666555443
No 406
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.37 E-value=0.00011 Score=48.89 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=16.0
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
..+.|.||+|||||||+
T Consensus 24 ~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLL 40 (62)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 37999999999999999
No 407
>KOG0066|consensus
Probab=97.32 E-value=0.00017 Score=65.15 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=25.5
Q ss_pred cCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc
Q psy18088 58 HFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV 102 (166)
Q Consensus 58 ~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~ 102 (166)
++..-|+|+||+|+|||||+ |+-+.-+ |..||.
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gkl~------------P~~GE~ 644 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGKLD------------PNDGEL 644 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcCCC------------CCcchh
Confidence 45558999999999999999 5544444 777875
No 408
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.30 E-value=0.00014 Score=60.88 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=21.3
Q ss_pred CCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088 45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
+.+++..+. .+.+++|.|+||||||||+
T Consensus 11 l~~v~~~ip-----~g~~~~vtGvSGsGKStL~ 38 (261)
T cd03271 11 LKNIDVDIP-----LGVLTCVTGVSGSGKSSLI 38 (261)
T ss_pred CCCceeecc-----CCcEEEEECCCCCchHHHH
Confidence 334454444 4559999999999999999
No 409
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.25 E-value=0.00013 Score=58.36 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=18.8
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+++++|+||||+|||||+ .+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 459999999999999999 5553
No 410
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.24 E-value=0.00012 Score=58.28 Aligned_cols=22 Identities=18% Similarity=-0.053 Sum_probs=18.4
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+ +++|+||||||||||+ .+.+
T Consensus 22 ~g-~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred CC-cEEEECCCCCCHHHHHHHHHH
Confidence 35 7999999999999999 5543
No 411
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.24 E-value=0.00019 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.149 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCChhhhc--ccccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLD 84 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~ 84 (166)
++.+.|+||+|+||||++ ++.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 347999999999999999 5555443
No 412
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.23 E-value=7.5e-05 Score=53.65 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=30.0
Q ss_pred EEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCH
Q psy18088 63 ILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTR 112 (166)
Q Consensus 63 ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~ 112 (166)
|+|+|++|+|||||+ |+.... .-....+.+|+.+..+. .++..+.++|-
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~vDt 54 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKL-AKVSNIPGTTRDPVYGQFEYNNKKFILVDT 54 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTS-SEESSSTTSSSSEEEEEEEETTEEEEEEES
T ss_pred EEEECCCCCCHHHHHHHHhcccc-ccccccccceeeeeeeeeeeceeeEEEEeC
Confidence 789999999999999 664322 12233355666664332 45555555443
No 413
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.23 E-value=0.00014 Score=57.09 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCChhhhc-ccccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
|++++|+||||||||||+ .+.+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 448999999999999999 65553
No 414
>KOG0064|consensus
Probab=97.22 E-value=0.00041 Score=63.65 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=29.3
Q ss_pred CCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceee
Q psy18088 45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGF 88 (166)
Q Consensus 45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~ 88 (166)
....+|.|.+|- -+.|.||+|||||+|. +++++--.+..
T Consensus 498 v~~Ltf~i~~G~-----hLLItGPNGCGKSSLfRILggLWPvy~g 537 (728)
T KOG0064|consen 498 VPKLTFQIEPGM-----HLLITGPNGCGKSSLFRILGGLWPVYNG 537 (728)
T ss_pred ecceeEEecCCc-----eEEEECCCCccHHHHHHHHhccCcccCC
Confidence 445667777666 6999999999999999 88876433433
No 415
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.22 E-value=0.00014 Score=57.71 Aligned_cols=21 Identities=19% Similarity=-0.108 Sum_probs=17.9
Q ss_pred CcEEEEEcCCCCChhhhc-ccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
+.+|+|.||||||||||. .+.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~ 27 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIY 27 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 448999999999999999 443
No 416
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.20 E-value=0.00021 Score=64.50 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=41.7
Q ss_pred eecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 35 LLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 35 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
.++|..-...+++..+.|..|++..+.+|+++||+|-||||++ ++++.-.
T Consensus 342 lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik 392 (591)
T COG1245 342 LVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK 392 (591)
T ss_pred eeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc
Confidence 5566666666777788899999999999999999999999999 7776443
No 417
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.18 E-value=0.00016 Score=53.35 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc--ccccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
+|+++||+||||||++ |....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 4889999999999999 55343
No 418
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.18 E-value=0.0002 Score=57.39 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhhhc-ccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
+.+++|+||+|||||||+ +|.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHhe
Confidence 348999999999999999 665
No 419
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.18 E-value=0.00031 Score=62.67 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=52.1
Q ss_pred ceEEeeeccee-----eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc-
Q psy18088 30 ITVRILLNYRT-----CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE- 101 (166)
Q Consensus 30 ~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge- 101 (166)
.+..++++..| ...+..++||+|..|| .++|+|.||||||--+ ++..+|. ....| | +|.
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GE-----tlAlVGESGSGKSvTa~sim~LLp~---~~~~~----~-sg~i 72 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGE-----TLALVGESGSGKSVTALSILGLLPS---PAAAH----P-SGSI 72 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCC-----EEEEEecCCCCccHHHHHHHHhcCC---CcccC----c-ccee
Confidence 56677888777 3778889999999999 8999999999999776 6655554 00000 1 233
Q ss_pred -cCCcceeecCHHHHHH
Q psy18088 102 -VDGKAYHFVTRADMEE 117 (166)
Q Consensus 102 -~~G~~y~fvs~~~f~~ 117 (166)
.+|.+..-.+..+++.
T Consensus 73 ~f~G~dll~~se~~lr~ 89 (534)
T COG4172 73 LFDGEDLLAASERQLRG 89 (534)
T ss_pred EEcChhhhcCCHHHHhh
Confidence 3666665566666554
No 420
>PRK08233 hypothetical protein; Provisional
Probab=97.17 E-value=0.0002 Score=54.90 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCChhhhc--cccccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
.+|+|.|++|||||||. |...++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 48999999999999999 555554
No 421
>PRK06762 hypothetical protein; Provisional
Probab=97.14 E-value=0.00021 Score=54.55 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=19.7
Q ss_pred CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
++++|+|.|++||||||+. |...+
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999 44444
No 422
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.13 E-value=0.00019 Score=58.03 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=18.0
Q ss_pred CcEEEEEcCCCCChhhhc-ccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
+.+++|+||+|||||||+ .|.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 348999999999999999 554
No 423
>PRK06761 hypothetical protein; Provisional
Probab=97.13 E-value=0.00075 Score=57.22 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=34.8
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecC--CCCCCccCCcceeecCHHHHHHHHHc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTR--GPRPGEVDGKAYHFVTRADMEERIAA 121 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR--~p~~ge~~G~~y~fvs~~~f~~~~~~ 121 (166)
+++|+|.||+||||||++ |...+.. .+..+...+. .+.+.+..+..+ .+.+++...+..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~-~g~~v~~~~~~~~~~p~d~~~~~~--~~~eer~~~l~~ 65 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQ-NGIEVELYLEGNLDHPADYDGVAC--FTKEEFDRLLSN 65 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCc-CceEEEEEecCCCCCchhhccccC--CCHHHHHHHHHh
Confidence 458999999999999999 5544443 2333333322 223344555333 366666665433
No 424
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.13 E-value=0.00023 Score=55.95 Aligned_cols=24 Identities=29% Similarity=0.174 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCCChhhhc--cccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
+..++|+||+||||||++ |+...+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 348999999999999999 555544
No 425
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.09 E-value=0.00025 Score=55.49 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCChhhhc-ccc-ccccceeeeEEeecCCCC
Q psy18088 60 FACILHVDFAMFGKTSFL-FLR-TVLDRFGFSVSHTTRGPR 98 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~-~~~~~f~~~v~~TTR~p~ 98 (166)
+++|+|.||+||||||+. .+. .+.. .+ ...++++.|.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~-~~-~~~~~~~~p~ 41 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQ-QG-RDVVFTREPG 41 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-cC-CceeEeeCCC
Confidence 569999999999999999 554 4432 22 2234566665
No 426
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.07 E-value=0.00034 Score=58.10 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=26.7
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeec
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTT 94 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TT 94 (166)
-++|+|+||||||||+ |+...+..|..++..|.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 4789999999999999 88777777866666653
No 427
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.05 E-value=0.00029 Score=54.28 Aligned_cols=20 Identities=20% Similarity=-0.027 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCChhhhc-ccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~ 80 (166)
++|+|+||+||||||+. .+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999 555
No 428
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.04 E-value=0.0003 Score=57.64 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=16.5
Q ss_pred CcEEEEEcCCCCChhhhc
Q psy18088 60 FACILHVDFAMFGKTSFL 77 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~ 77 (166)
+.+++|+||||||||||+
T Consensus 25 ~~~~~IvG~NGsGKStll 42 (251)
T cd03273 25 PQFNAITGLNGSGKSNIL 42 (251)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 348999999999999999
No 429
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.02 E-value=0.00022 Score=56.12 Aligned_cols=16 Identities=25% Similarity=-0.022 Sum_probs=15.1
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
+|+|+||||||||||.
T Consensus 1 iigi~G~~GsGKSTl~ 16 (198)
T cd02023 1 IIGIAGGSGSGKTTVA 16 (198)
T ss_pred CEEEECCCCCCHHHHH
Confidence 4899999999999999
No 430
>PRK07261 topology modulation protein; Provisional
Probab=97.00 E-value=0.00027 Score=55.03 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=16.4
Q ss_pred EEEEEcCCCCChhhhc-ccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~ 80 (166)
-|+|+|+||||||||. .+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 4899999999999999 443
No 431
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.00 E-value=0.00028 Score=55.99 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=18.2
Q ss_pred CcEEEEEcCCCCChhhhc-ccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
++.++|+||+|+||||++ .+.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHH
Confidence 348999999999999999 554
No 432
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.97 E-value=0.00039 Score=53.61 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=23.7
Q ss_pred EEEEEcCCCCChhhhc-ccc-ccccceeeeEEeecCCCCC
Q psy18088 62 CILHVDFAMFGKTSFL-FLR-TVLDRFGFSVSHTTRGPRP 99 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~-~~~~~f~~~v~~TTR~p~~ 99 (166)
+|+|.||.||||||+. ++. .+. .-+..+ .+++.|..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~-~~g~~v-~~~~~~~~ 39 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE-ARGYEV-VLTREPGG 39 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HcCCeE-EEEeCCCC
Confidence 7999999999999999 544 443 222233 34555554
No 433
>KOG3354|consensus
Probab=96.97 E-value=0.0006 Score=53.72 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=28.3
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHH
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERI 119 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~ 119 (166)
.++++|+|||||||+. |...+.- .-++|-||| +.+..+.|-
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~---------------~F~dgDd~H--p~~NveKM~ 56 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGL---------------KFIDGDDLH--PPANVEKMT 56 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCC---------------cccccccCC--CHHHHHHHh
Confidence 7999999999999999 5544431 224666766 555556553
No 434
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.97 E-value=0.00035 Score=56.35 Aligned_cols=19 Identities=16% Similarity=0.002 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc-ccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~ 80 (166)
+++|+||+|+||||++ .|.
T Consensus 27 i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 27 FSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999 543
No 435
>PRK12288 GTPase RsgA; Reviewed
Probab=96.97 E-value=0.00033 Score=60.83 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=18.6
Q ss_pred CcEEEEEcCCCCChhhhc--cccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
+++++|+|+||+|||||+ |+..
T Consensus 205 ~ki~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 205 GRISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred hCCEEEECCCCCCHHHHHHHhccc
Confidence 347999999999999999 6644
No 436
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.96 E-value=0.00031 Score=55.37 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhhhc--cccccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
+|+|.|||||||||+. |...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999 554443
No 437
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.00034 Score=55.35 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|||||||||+. |.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999 5544
No 438
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.94 E-value=0.00041 Score=53.60 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
.+.+|+|.|++||||||+. |...+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3459999999999999999 444443
No 439
>KOG0065|consensus
Probab=96.94 E-value=0.00035 Score=69.26 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=27.0
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+++.+.+-.+++|. +.+|+|+||+|||||+ ++++
T Consensus 804 ~qLL~~V~G~~kPG~-----LTALMG~SGAGKTTLLdvLA~ 839 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGV-----LTALMGESGAGKTTLLDVLAG 839 (1391)
T ss_pred eEhhhcCceEecCCc-----eeehhcCCCCchHHHHHHHhc
Confidence 445666665556555 8999999999999999 6665
No 440
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.00073 Score=55.33 Aligned_cols=25 Identities=16% Similarity=-0.092 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCChhhhc--ccccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLD 84 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~ 84 (166)
..+|+|.|+|||||||+. |...++.
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 348999999999999999 6666653
No 441
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.93 E-value=0.00036 Score=55.15 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCChhhhc--cccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
.++++|+|+||||||||+ |+..+.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHh
Confidence 448999999999999998 665543
No 442
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.92 E-value=0.00029 Score=57.19 Aligned_cols=16 Identities=19% Similarity=0.057 Sum_probs=15.0
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
+|+|.||||||||||+
T Consensus 1 IigI~G~sGSGKTTla 16 (220)
T cd02025 1 IIGIAGSVAVGKSTTA 16 (220)
T ss_pred CEEeeCCCCCCHHHHH
Confidence 4789999999999999
No 443
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.91 E-value=0.00042 Score=56.14 Aligned_cols=24 Identities=8% Similarity=-0.069 Sum_probs=19.1
Q ss_pred CcEEEEEcCCCCChhhhc--cccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
+.+++|+||||||||||. |...++
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 449999999999999999 444443
No 444
>PTZ00301 uridine kinase; Provisional
Probab=96.91 E-value=0.00036 Score=56.56 Aligned_cols=21 Identities=19% Similarity=0.090 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCChhhhc--cccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
.+|+|.||||||||||. |...
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHH
Confidence 48999999999999999 5443
No 445
>PRK12289 GTPase RsgA; Reviewed
Probab=96.91 E-value=0.00049 Score=59.96 Aligned_cols=38 Identities=26% Similarity=0.144 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEE-------eecCCCC
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVS-------HTTRGPR 98 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~-------~TTR~p~ 98 (166)
+++++|+|+||+|||||+ |+.... .-...++ ||||...
T Consensus 172 ~ki~v~iG~SgVGKSSLIN~L~~~~~-~~t~~vs~~~~rGrHTT~~~~ 218 (352)
T PRK12289 172 NKITVVAGPSGVGKSSLINRLIPDVE-LRVGKVSGKLGRGRHTTRHVE 218 (352)
T ss_pred cceEEEEeCCCCCHHHHHHHHcCccc-cccccccCCCCCCCCcCceeE
Confidence 347999999999999999 664432 1223444 4888653
No 446
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.89 E-value=0.00089 Score=56.39 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=49.8
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEE-------eecCCCCCCcc---------CCc---ceeecCHHHHHHH
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVS-------HTTRGPRPGEV---------DGK---AYHFVTRADMEER 118 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~-------~TTR~p~~ge~---------~G~---~y~fvs~~~f~~~ 118 (166)
++.++++||||+|||||+ |+...... ...++ |||+....-.. .|. ++..++.++....
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~-~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 239 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLA-TGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHY 239 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhcc-ccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHH
Confidence 368999999999999999 55443211 11222 45654321111 122 1123444444432
Q ss_pred HHc-CCccceeeehh-hhcCCChHHHHHHHhhccCChhHHhhC
Q psy18088 119 IAA-GEFLEHAEFAA-NLYGTSQCGRQNGRNYLIFNTLAAKCL 159 (166)
Q Consensus 119 ~~~-~~fle~~~~~g-n~yG~~~~~I~~ile~v~L~~~~~~~l 159 (166)
+.. ..+...-.+.+ .+...|.++|+++++-=.+.....+.+
T Consensus 240 f~~~~~~~~~C~F~~C~H~~Ep~Cav~~av~~g~i~~~Ry~~y 282 (287)
T cd01854 240 FPEFRELAGQCKFRDCTHTNEPGCAVKAAVEAGEISPERYESY 282 (287)
T ss_pred hHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence 211 01122222332 144567788988887544455554443
No 447
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.89 E-value=0.00047 Score=50.57 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=15.3
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
-|+++|++|+|||||+
T Consensus 3 ~i~l~G~~~~GKstli 18 (157)
T cd04164 3 KVVIVGKPNVGKSSLL 18 (157)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999999
No 448
>PLN02796 D-glycerate 3-kinase
Probab=96.86 E-value=0.00053 Score=59.70 Aligned_cols=29 Identities=21% Similarity=-0.009 Sum_probs=22.2
Q ss_pred ccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 53 RSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 53 ~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++|+...+-+|+|+||||||||||+ .+..
T Consensus 93 ~~G~~~~pliIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 93 KDGDEIPPLVIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred ccCCCCCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3455455668999999999999999 4444
No 449
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.00079 Score=59.19 Aligned_cols=23 Identities=13% Similarity=-0.064 Sum_probs=19.1
Q ss_pred CCcEEEEEcCCCCChhhhc--cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
.+.+++|+||+||||||++ |...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3448999999999999999 5544
No 450
>PRK01889 GTPase RsgA; Reviewed
Probab=96.85 E-value=0.0006 Score=59.28 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=18.3
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.++|+|+||+|||||+ .+.+
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g 217 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLG 217 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 448999999999999999 4433
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.85 E-value=0.00047 Score=54.85 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhhhc--cccccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
+++|+||+||||||++ |+...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999 666554
No 452
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.85 E-value=0.00048 Score=54.64 Aligned_cols=29 Identities=21% Similarity=0.123 Sum_probs=22.0
Q ss_pred CCCCcccccccCCcEEEEEcCCCCChhhhc-ccc
Q psy18088 48 PDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 48 ~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
.++.+..++ +.++|.||+|+|||||+ .+.
T Consensus 20 ~~~~i~~~~----~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 20 LDIQLGENK----RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEECCCc----eEEEEECCCCCChHHHHHHHH
Confidence 455555442 48999999999999999 544
No 453
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.85 E-value=0.00027 Score=52.51 Aligned_cols=52 Identities=25% Similarity=0.271 Sum_probs=31.8
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHH
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRAD 114 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~ 114 (166)
-|+|+|++|+|||||+ |+.... ......+.||+...... .+|.++.+++.+.
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG 59 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEER-VIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAG 59 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccc-eeccCCCCCccCceeeEEEECCeeEEEEECCC
Confidence 5899999999999999 655421 22233445555543332 3555566655543
No 454
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.85 E-value=0.00051 Score=49.22 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=16.3
Q ss_pred EEEEcCCCCChhhhc--cccc
Q psy18088 63 ILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 63 ivLiGPSGsGKSTL~--Li~~ 81 (166)
|+|.|++|||||||+ |...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999 5444
No 455
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.83 E-value=0.0005 Score=58.43 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=17.8
Q ss_pred CcEEEEEcCCCCChhhhc-ccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
+-+|+|.|||||||||++ ++.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 348999999999999999 443
No 456
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.82 E-value=0.00038 Score=52.94 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.8
Q ss_pred EEEEcCCCCChhhhc-cccc
Q psy18088 63 ILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 63 ivLiGPSGsGKSTL~-Li~~ 81 (166)
|+|+||+||||||+. .+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 478999999999999 4444
No 457
>PRK14527 adenylate kinase; Provisional
Probab=96.82 E-value=0.00059 Score=53.59 Aligned_cols=22 Identities=14% Similarity=-0.025 Sum_probs=19.0
Q ss_pred CCcEEEEEcCCCCChhhhc-ccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
.+++|+|+||+||||||+. .++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La 27 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLA 27 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999999 554
No 458
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.82 E-value=0.00048 Score=55.14 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCChhhhc--cccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
+++++++||+||||||.+ |...+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh
Confidence 358999999999999999 655543
No 459
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.80 E-value=0.00063 Score=49.64 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=14.5
Q ss_pred EEEEcCCCCChhhhc
Q psy18088 63 ILHVDFAMFGKTSFL 77 (166)
Q Consensus 63 ivLiGPSGsGKSTL~ 77 (166)
|+|+||+|||||||+
T Consensus 2 i~i~G~~~~GKssl~ 16 (159)
T cd04159 2 ITLVGLQNSGKTTLV 16 (159)
T ss_pred EEEEcCCCCCHHHHH
Confidence 789999999999999
No 460
>PRK14530 adenylate kinase; Provisional
Probab=96.79 E-value=0.00061 Score=54.57 Aligned_cols=23 Identities=22% Similarity=-0.005 Sum_probs=18.9
Q ss_pred CcEEEEEcCCCCChhhhc-ccccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++.|+|+||+||||||+. +++..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999 66543
No 461
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.79 E-value=0.00057 Score=48.67 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=17.1
Q ss_pred EEEEcCCCCChhhhc--ccccc
Q psy18088 63 ILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 63 ivLiGPSGsGKSTL~--Li~~~ 82 (166)
|+|+|++|||||||+ |+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 789999999999999 66553
No 462
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.76 E-value=0.0007 Score=53.62 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+++|+|+||||||||. ++..
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 448999999999999999 5544
No 463
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.75 E-value=0.00071 Score=51.21 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=18.5
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+..|+|+||+||||||+. .++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 458999999999999999 4443
No 464
>PRK06696 uridine kinase; Validated
Probab=96.72 E-value=0.00066 Score=54.78 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCChhhhc--cccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
+.+|+|.|+||||||||. |...++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 448999999999999999 555554
No 465
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.72 E-value=0.00059 Score=45.46 Aligned_cols=19 Identities=21% Similarity=0.037 Sum_probs=16.1
Q ss_pred EEEEcCCCCChhhhc-cccc
Q psy18088 63 ILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 63 ivLiGPSGsGKSTL~-Li~~ 81 (166)
++|.|++||||||+. .+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 789999999999999 4443
No 466
>KOG1384|consensus
Probab=96.71 E-value=0.00054 Score=59.21 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccc--------eeeeEEeecCCCCCCccCCcceeec
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHFV 110 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~fv 110 (166)
-++++|+||+|+|||-|. |...++.- +......+|.++...|..|+.+|.+
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLl 67 (348)
T KOG1384|consen 7 DKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLL 67 (348)
T ss_pred ceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHh
Confidence 468999999999999999 88777651 2223335688888888888876543
No 467
>PRK13975 thymidylate kinase; Provisional
Probab=96.71 E-value=0.00077 Score=52.60 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=19.1
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+++|+|.|+.||||||+. +++.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 569999999999999999 5554
No 468
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.70 E-value=0.00061 Score=61.09 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=29.4
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
-+++++++.+++|+ .++|+|+||+||||++ ++.+
T Consensus 397 yvlr~vNL~ikpGd-----vvaVvGqSGaGKttllRmi~G 431 (593)
T COG2401 397 YVLRNLNLEIKPGD-----VVAVVGQSGAGKTTLLRMILG 431 (593)
T ss_pred eeeeceeeEecCCC-----eEEEEecCCCCcchHHHHHHH
Confidence 35778888899888 8999999999999999 6665
No 469
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.70 E-value=0.00046 Score=53.94 Aligned_cols=43 Identities=14% Similarity=-0.013 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCChhhhc--cccccc-------cceeeeEEeecCCCCCCcc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVL-------DRFGFSVSHTTRGPRPGEV 102 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~-------~~f~~~v~~TTR~p~~ge~ 102 (166)
+..++|+|.+|+|||||+ |+...- ..-....+.|||.+....+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~ 178 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL 178 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec
Confidence 447999999999999999 655321 1122355567887755444
No 470
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.68 E-value=0.00087 Score=51.70 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=19.3
Q ss_pred CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
.+.+|+|+|++||||||+. |...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3558999999999999999 44443
No 471
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.66 E-value=0.00066 Score=51.04 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=30.4
Q ss_pred EEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cC-CcceeecCHHHH
Q psy18088 65 HVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VD-GKAYHFVTRADM 115 (166)
Q Consensus 65 LiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~-G~~y~fvs~~~f 115 (166)
|+|++|||||||+ |..... .....+.||+.|..+. .+ +..+.+++.+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~ 54 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGL 54 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEecccc
Confidence 5899999999999 554422 2223345666665553 34 666666665543
No 472
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.65 E-value=0.00095 Score=55.36 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=26.8
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG 100 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g 100 (166)
+|+|+|+++||||||+ |+.... ......+.|||.+-.|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~-~~vs~~~~TTr~~i~~ 41 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI-SITSPKAQTTRNRISG 41 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE-eecCCCCCcccCcEEE
Confidence 5899999999999999 665432 1234556788865433
No 473
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.65 E-value=0.00093 Score=50.72 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=17.3
Q ss_pred cEEEEEcCCCCChhhhc--cccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
..++++|+||+|||||+ |+..
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcC
Confidence 36779999999999999 5543
No 474
>PRK06547 hypothetical protein; Provisional
Probab=96.64 E-value=0.00095 Score=52.36 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCChhhhc
Q psy18088 60 FACILHVDFAMFGKTSFL 77 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~ 77 (166)
..+|+|.||||||||||.
T Consensus 15 ~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLA 32 (172)
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 347888899999999999
No 475
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.62 E-value=0.00089 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=16.6
Q ss_pred CCcEEEEEcCCCCChhhhc--cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
+++.|+|+||+|||||+|+ |..+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHS
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Confidence 3558999999999999999 5544
No 476
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.61 E-value=0.001 Score=49.89 Aligned_cols=50 Identities=20% Similarity=0.146 Sum_probs=28.7
Q ss_pred EEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCcc--CCc-ceeecCHHH
Q psy18088 63 ILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEV--DGK-AYHFVTRAD 114 (166)
Q Consensus 63 ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~--~G~-~y~fvs~~~ 114 (166)
|+|+|++|||||||+ |....+ -....+.+|+.|..|.+ ++. .+.+++-+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 57 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPG 57 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCc
Confidence 789999999999999 543322 11122345666654432 332 444444443
No 477
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.61 E-value=0.00093 Score=50.48 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=15.4
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
-++|+||+|||||||+
T Consensus 16 ~v~i~G~~g~GKStLl 31 (173)
T cd04155 16 RILILGLDNAGKTTIL 31 (173)
T ss_pred EEEEEccCCCCHHHHH
Confidence 5999999999999999
No 478
>PRK15494 era GTPase Era; Provisional
Probab=96.60 E-value=0.0016 Score=56.12 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=39.2
Q ss_pred CCCCCCCCcccccccCCc--EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHH
Q psy18088 44 ASGNPDSGIRSGRIHFFA--CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRA 113 (166)
Q Consensus 44 ~~~~~~~~v~~~~~~~~~--~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~ 113 (166)
.+..+.+.++.|++...+ .|+|+|.+|||||||+ |+..... ...+-+.|||....+. .++..+.|++.+
T Consensus 34 ~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTp 108 (339)
T PRK15494 34 STSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTP 108 (339)
T ss_pred cccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCCeEEEEEECC
Confidence 344445556666654322 7899999999999999 6644211 1123345676543332 244445555433
No 479
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.60 E-value=0.0009 Score=52.61 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|.+|||||||+ |+..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 3899999999999999 5544
No 480
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.59 E-value=0.00097 Score=56.10 Aligned_cols=24 Identities=25% Similarity=0.088 Sum_probs=20.0
Q ss_pred CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
.+++++|+||+||||||++ |...+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999 55554
No 481
>PRK06217 hypothetical protein; Validated
Probab=96.59 E-value=0.00089 Score=52.30 Aligned_cols=19 Identities=21% Similarity=-0.003 Sum_probs=16.5
Q ss_pred EEEEEcCCCCChhhhc-ccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~ 80 (166)
-|+|+|+||||||||. .++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~ 22 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALA 22 (183)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 4899999999999999 444
No 482
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.58 E-value=0.0011 Score=51.77 Aligned_cols=21 Identities=24% Similarity=0.083 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.|+|+||+|||||||. .++.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 37999999999999999 6654
No 483
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.56 E-value=0.0014 Score=46.67 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=18.2
Q ss_pred CcEEEEEcCCCCChhhhc--cccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
++.+.|.||+|+|||+|+ +...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 447999999999999999 4444
No 484
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.56 E-value=0.0009 Score=48.13 Aligned_cols=20 Identities=30% Similarity=0.162 Sum_probs=16.6
Q ss_pred EEEEcCCCCChhhhc-ccccc
Q psy18088 63 ILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 63 ivLiGPSGsGKSTL~-Li~~~ 82 (166)
|+|.||+|+|||+++ .+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999 55443
No 485
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.56 E-value=0.0011 Score=54.25 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=16.0
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
++++|+||+|||||||+
T Consensus 23 ~~~~i~G~NGsGKStll 39 (247)
T cd03275 23 RFTCIIGPNGSGKSNLM 39 (247)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 38999999999999999
No 486
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.55 E-value=0.00087 Score=50.18 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc-ccccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++|+||+||||||+. .+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999 55543
No 487
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.54 E-value=0.0013 Score=50.94 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=18.9
Q ss_pred CcEEEEEcCCCCChhhhc--cccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
++-+.|+||||+||||+. |+..
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457999999999999999 6665
No 488
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.54 E-value=0.0011 Score=52.96 Aligned_cols=18 Identities=33% Similarity=0.257 Sum_probs=16.7
Q ss_pred EEEEEcCCCCChhhhc-cc
Q psy18088 62 CILHVDFAMFGKTSFL-FL 79 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li 79 (166)
+++|+||||+|||||+ .+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai 42 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEAL 42 (204)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 8999999999999999 54
No 489
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.52 E-value=0.0013 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=18.8
Q ss_pred CcEEEEEcCCCCChhhhc--ccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
.++|+++||+||||||+. |...+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHC
Confidence 458999999999999999 44444
No 490
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.52 E-value=0.0012 Score=59.78 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=19.5
Q ss_pred CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
.+++++|+||+||||||++ |...+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 3459999999999999999 55444
No 491
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.51 E-value=0.0024 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCChhhhc-cccccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+-++|+||+|||||||+ .+.+.-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc
Confidence 46899999999999999 555544
No 492
>PRK00089 era GTPase Era; Reviewed
Probab=96.49 E-value=0.0013 Score=54.88 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCC
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGP 97 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p 97 (166)
.+|+|+|++|||||||+ |+.... ......+.|||..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~-~~vs~~~~tt~~~ 43 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRHR 43 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCce-eecCCCCCccccc
Confidence 37999999999999999 654422 1223345566654
No 493
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.49 E-value=0.0014 Score=53.34 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+|+|.||+||||||+. +++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAE 24 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999 6653
No 494
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.48 E-value=0.0015 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc-ccccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
-+.|+||+|||||||. .+.+.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999 55543
No 495
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.48 E-value=0.0015 Score=50.09 Aligned_cols=17 Identities=18% Similarity=0.045 Sum_probs=16.1
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
.+.+|+||+|+|||||+
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 48999999999999999
No 496
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.46 E-value=0.0012 Score=50.21 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhhhc--cccccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
.|.|+||++||||||. |+..+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 6899999999999999 877755
No 497
>PRK03839 putative kinase; Provisional
Probab=96.46 E-value=0.0013 Score=50.99 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.|+|+|++||||||+. .++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999 5554
No 498
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=96.44 E-value=0.0015 Score=58.52 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=29.4
Q ss_pred eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 41 CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 41 ~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.+.+++++ +.+.+|+ .++|+||||+|||||+ +|.+.
T Consensus 142 Gi~aID~l-l~I~~GQ-----~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 142 GVNAINGL-LTIGKGQ-----RVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceeeccce-EeEecce-----EEEEECCCCCCccHHHHHHhcc
Confidence 46777777 7777777 8999999999999999 66554
No 499
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.44 E-value=0.0024 Score=55.21 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=28.1
Q ss_pred eecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 41 CISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 41 ~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.+.+++.. +.+.+|+ .++|+||||+|||||+ ++.+..
T Consensus 56 Gi~aiD~l-~~i~~Gq-----ri~I~G~sG~GKTtLl~~Ia~~~ 93 (326)
T cd01136 56 GVRAIDGL-LTVGKGQ-----RLGIFAGSGVGKSTLLGMIARGT 93 (326)
T ss_pred CcEEEeee-eEEcCCc-----EEEEECCCCCChHHHHHHHhCCC
Confidence 45565555 6666666 8999999999999999 665543
No 500
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.0015 Score=58.30 Aligned_cols=23 Identities=17% Similarity=-0.051 Sum_probs=19.2
Q ss_pred cCCcEEEEEcCCCCChhhhc-ccc
Q psy18088 58 HFFACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 58 ~~~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
..+.+++|+||+|+||||++ .++
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA 212 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLA 212 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 34569999999999999999 444
Done!