Query psy18088
Match_columns 166
No_of_seqs 181 out of 1198
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:17:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ex7_A Guanylate kinase; subst 100.0 8.8E-31 3E-35 206.9 5.4 105 61-165 2-113 (186)
2 3ney_A 55 kDa erythrocyte memb 99.9 3.5E-26 1.2E-30 182.2 7.2 107 59-165 18-131 (197)
3 3tvt_A Disks large 1 tumor sup 99.9 3.1E-26 1E-30 192.2 6.6 133 19-165 70-210 (292)
4 1kjw_A Postsynaptic density pr 99.9 1.6E-24 5.6E-29 181.6 6.7 120 31-164 87-216 (295)
5 2xkx_A Disks large homolog 4; 99.9 3.4E-22 1.1E-26 184.3 8.1 122 30-165 512-643 (721)
6 1kgd_A CASK, peripheral plasma 99.9 4.1E-22 1.4E-26 153.8 6.7 106 59-164 4-116 (180)
7 3tau_A Guanylate kinase, GMP k 99.8 1.8E-21 6.1E-26 153.5 6.2 105 60-164 8-119 (208)
8 3a00_A Guanylate kinase, GMP k 99.8 5.6E-21 1.9E-25 147.9 5.9 102 60-161 1-109 (186)
9 2qor_A Guanylate kinase; phosp 99.8 2.2E-20 7.7E-25 146.2 6.2 106 59-164 11-123 (204)
10 1lvg_A Guanylate kinase, GMP k 99.8 8.7E-20 3E-24 143.2 5.9 101 59-159 3-110 (198)
11 1s96_A Guanylate kinase, GMP k 99.8 2.1E-19 7.3E-24 144.2 5.8 106 59-164 15-128 (219)
12 3lnc_A Guanylate kinase, GMP k 99.7 6.4E-18 2.2E-22 134.3 4.3 116 42-163 14-137 (231)
13 1z6g_A Guanylate kinase; struc 99.7 1.1E-16 3.8E-21 127.3 6.4 114 43-161 11-131 (218)
14 3tr0_A Guanylate kinase, GMP k 99.6 1.2E-15 4.1E-20 117.8 5.7 103 60-163 7-116 (205)
15 2j41_A Guanylate kinase; GMP, 99.5 1.6E-14 5.6E-19 111.3 5.8 88 59-147 5-95 (207)
16 1znw_A Guanylate kinase, GMP k 99.5 2.3E-14 7.8E-19 112.3 6.2 105 59-164 19-132 (207)
17 3tsz_A Tight junction protein 99.3 8.8E-13 3E-17 114.2 4.3 91 29-164 212-309 (391)
18 3shw_A Tight junction protein 99.3 5.5E-13 1.9E-17 118.1 2.4 93 27-164 202-301 (468)
19 3fvq_A Fe(3+) IONS import ATP- 99.2 1.4E-12 4.7E-17 112.0 -0.6 107 30-153 4-130 (359)
20 3tui_C Methionine import ATP-b 99.2 1.2E-11 4E-16 106.5 4.2 108 29-153 23-155 (366)
21 4g1u_C Hemin import ATP-bindin 99.2 1E-11 3.4E-16 102.1 3.4 107 30-153 11-133 (266)
22 3rlf_A Maltose/maltodextrin im 99.1 1.3E-12 4.3E-17 113.1 -2.9 107 30-153 3-125 (381)
23 3nh6_A ATP-binding cassette SU 99.1 1.1E-11 3.6E-16 104.3 1.9 106 30-152 53-170 (306)
24 4f4c_A Multidrug resistance pr 99.1 2.6E-11 8.9E-16 118.2 3.6 106 30-152 1076-1197(1321)
25 1v43_A Sugar-binding transport 99.1 6.4E-12 2.2E-16 108.2 -0.6 108 30-154 11-134 (372)
26 2yyz_A Sugar ABC transporter, 99.1 4.7E-12 1.6E-16 108.6 -1.6 107 30-153 3-125 (359)
27 2pcj_A ABC transporter, lipopr 99.1 3.5E-11 1.2E-15 96.2 3.6 107 30-153 4-132 (224)
28 3tif_A Uncharacterized ABC tra 99.1 4.8E-11 1.7E-15 96.1 4.2 106 31-153 2-136 (235)
29 1g6h_A High-affinity branched- 99.1 4E-11 1.4E-15 97.7 2.9 61 30-107 7-71 (257)
30 3b5x_A Lipid A export ATP-bind 99.1 1.1E-10 3.7E-15 105.0 5.5 107 29-153 340-461 (582)
31 1z47_A CYSA, putative ABC-tran 99.1 5.5E-12 1.9E-16 108.1 -3.1 107 30-153 14-137 (355)
32 1oxx_K GLCV, glucose, ABC tran 99.0 7.4E-12 2.5E-16 107.0 -2.4 107 30-153 3-132 (353)
33 2qi9_C Vitamin B12 import ATP- 99.0 7E-11 2.4E-15 96.3 3.2 104 30-154 4-119 (249)
34 2it1_A 362AA long hypothetical 99.0 5.7E-12 2E-16 108.2 -3.5 107 30-153 3-125 (362)
35 3d31_A Sulfate/molybdate ABC t 99.0 5.4E-12 1.8E-16 107.8 -3.7 106 31-153 2-119 (348)
36 1g29_1 MALK, maltose transport 99.0 7.6E-12 2.6E-16 107.7 -2.8 107 30-153 3-131 (372)
37 1mv5_A LMRA, multidrug resista 99.0 3.2E-11 1.1E-15 97.4 0.5 104 31-152 2-119 (243)
38 2ff7_A Alpha-hemolysin translo 99.0 1E-10 3.5E-15 94.9 3.3 106 30-153 7-126 (247)
39 1sgw_A Putative ABC transporte 99.0 1.2E-11 4E-16 98.9 -2.3 109 27-153 7-126 (214)
40 1b0u_A Histidine permease; ABC 99.0 3.8E-11 1.3E-15 98.3 0.2 108 30-154 6-145 (262)
41 1vpl_A ABC transporter, ATP-bi 99.0 8.2E-11 2.8E-15 96.2 2.1 109 28-154 13-139 (256)
42 2olj_A Amino acid ABC transpor 99.0 1.3E-10 4.5E-15 95.4 3.2 107 30-153 24-151 (263)
43 3b60_A Lipid A export ATP-bind 99.0 1.3E-10 4.5E-15 104.3 3.4 108 29-153 340-461 (582)
44 3qf4_B Uncharacterized ABC tra 99.0 2.3E-10 7.9E-15 103.2 4.8 106 30-152 354-471 (598)
45 4f4c_A Multidrug resistance pr 99.0 2E-10 6.8E-15 112.0 4.2 106 30-152 415-534 (1321)
46 2ixe_A Antigen peptide transpo 99.0 2.9E-10 1E-14 93.5 4.0 90 29-136 15-116 (271)
47 3qf4_A ABC transporter, ATP-bi 99.0 4.1E-10 1.4E-14 101.5 5.1 106 30-152 341-459 (587)
48 4a82_A Cystic fibrosis transme 99.0 3E-10 1E-14 102.0 4.0 106 30-152 339-457 (578)
49 1ji0_A ABC transporter; ATP bi 98.9 1.1E-10 3.8E-15 94.2 0.6 87 30-133 6-101 (240)
50 2ihy_A ABC transporter, ATP-bi 98.9 1.5E-10 5.1E-15 95.8 1.2 50 30-84 21-72 (279)
51 2yl4_A ATP-binding cassette SU 98.9 2.4E-10 8E-15 103.0 2.6 106 31-153 342-464 (595)
52 3gfo_A Cobalt import ATP-bindi 98.9 1.4E-10 4.9E-15 95.8 1.1 61 30-107 7-72 (275)
53 2onk_A Molybdate/tungstate ABC 98.9 6.1E-11 2.1E-15 96.1 -1.6 47 31-84 2-49 (240)
54 3gd7_A Fusion complex of cysti 98.9 2.9E-10 9.7E-15 98.5 2.5 107 29-154 18-137 (390)
55 2d2e_A SUFC protein; ABC-ATPas 98.9 1.8E-10 6E-15 93.5 -0.1 48 30-82 3-52 (250)
56 2ghi_A Transport protein; mult 98.9 7.1E-10 2.4E-14 90.6 3.4 106 29-153 16-136 (260)
57 3eph_A TRNA isopentenyltransfe 98.9 6.2E-11 2.1E-15 103.3 -3.2 64 61-124 3-76 (409)
58 3exa_A TRNA delta(2)-isopenten 98.9 4.4E-11 1.5E-15 101.4 -4.2 57 60-116 3-69 (322)
59 2nq2_C Hypothetical ABC transp 98.8 9.2E-11 3.1E-15 95.6 -3.7 49 30-83 4-55 (253)
60 3foz_A TRNA delta(2)-isopenten 98.8 6.7E-11 2.3E-15 100.1 -5.2 58 59-116 9-76 (316)
61 3g5u_A MCG1178, multidrug resi 98.8 2.4E-09 8.3E-14 104.1 3.9 106 29-151 386-505 (1284)
62 2zu0_C Probable ATP-dependent 98.7 1.3E-09 4.3E-14 89.4 0.4 48 30-82 20-69 (267)
63 2cbz_A Multidrug resistance-as 98.7 1.4E-09 4.9E-14 87.6 0.0 49 30-83 3-55 (237)
64 2pjz_A Hypothetical protein ST 98.7 1.5E-09 5.3E-14 89.0 0.1 46 31-82 2-53 (263)
65 3g5u_A MCG1178, multidrug resi 98.7 5.3E-09 1.8E-13 101.8 3.8 106 29-151 1029-1150(1284)
66 3a8t_A Adenylate isopentenyltr 98.7 7.6E-10 2.6E-14 94.4 -2.6 57 59-115 39-105 (339)
67 2yz2_A Putative ABC transporte 98.7 2.9E-09 1E-13 87.1 1.0 103 30-152 2-127 (266)
68 2pze_A Cystic fibrosis transme 98.7 2.7E-09 9.4E-14 85.4 0.8 50 30-84 6-59 (229)
69 2bbs_A Cystic fibrosis transme 98.4 1.6E-08 5.6E-13 84.0 -1.1 49 29-83 39-88 (290)
70 3kfv_A Tight junction protein 98.4 7.3E-08 2.5E-12 81.2 2.4 82 35-165 131-219 (308)
71 3crm_A TRNA delta(2)-isopenten 98.4 5.3E-09 1.8E-13 88.6 -5.0 55 59-113 4-68 (323)
72 4gp7_A Metallophosphoesterase; 98.2 3.8E-07 1.3E-11 69.1 1.0 25 48-77 2-26 (171)
73 3j16_B RLI1P; ribosome recycli 98.2 6.3E-07 2.1E-11 81.4 2.6 42 42-83 360-402 (608)
74 2v9p_A Replication protein E1; 98.1 6E-08 2E-12 81.4 -4.9 48 31-83 102-150 (305)
75 3bk7_A ABC transporter ATP-bin 98.1 1.7E-06 5.7E-11 78.6 3.9 45 34-84 95-142 (607)
76 1yqt_A RNAse L inhibitor; ATP- 98.1 1.1E-06 3.8E-11 78.5 2.6 45 34-84 25-72 (538)
77 3bk7_A ABC transporter ATP-bin 98.1 1E-06 3.6E-11 79.9 2.1 31 48-83 375-406 (607)
78 2jeo_A Uridine-cytidine kinase 98.1 9.7E-07 3.3E-11 70.3 1.6 35 42-81 12-47 (245)
79 3d3q_A TRNA delta(2)-isopenten 98.1 1.8E-06 6.2E-11 73.5 3.2 51 61-111 8-68 (340)
80 1yqt_A RNAse L inhibitor; ATP- 98.1 1.1E-06 3.6E-11 78.6 1.9 48 31-83 288-336 (538)
81 1htw_A HI0065; nucleotide-bind 98.0 1E-06 3.5E-11 66.9 1.3 33 44-81 22-55 (158)
82 2iw3_A Elongation factor 3A; a 98.0 4.4E-07 1.5E-11 86.5 -0.9 50 30-84 671-724 (986)
83 3ozx_A RNAse L inhibitor; ATP 98.0 1.2E-06 4.1E-11 78.4 2.0 31 49-84 288-319 (538)
84 2ze6_A Isopentenyl transferase 98.0 1.7E-06 6E-11 69.7 2.3 50 62-111 3-62 (253)
85 3b85_A Phosphate starvation-in 98.0 8.3E-07 2.8E-11 70.2 0.1 23 60-82 22-45 (208)
86 1gvn_B Zeta; postsegregational 98.0 1.8E-06 6.2E-11 71.0 1.6 40 59-99 32-74 (287)
87 1pui_A ENGB, probable GTP-bind 97.9 3.8E-06 1.3E-10 64.0 3.0 44 31-81 4-48 (210)
88 3j16_B RLI1P; ribosome recycli 97.9 4.3E-06 1.5E-10 75.9 3.6 32 60-103 103-135 (608)
89 1zp6_A Hypothetical protein AT 97.9 3.6E-06 1.2E-10 63.6 2.1 25 59-83 8-33 (191)
90 3euj_A Chromosome partition pr 97.9 2.4E-06 8.1E-11 75.8 0.4 36 42-83 17-53 (483)
91 3c8u_A Fructokinase; YP_612366 97.8 5.5E-06 1.9E-10 64.2 1.7 23 59-81 21-44 (208)
92 3b9q_A Chloroplast SRP recepto 97.8 6.2E-06 2.1E-10 68.6 1.8 31 47-82 92-123 (302)
93 3vaa_A Shikimate kinase, SK; s 97.8 7E-06 2.4E-10 63.1 1.7 34 43-81 13-47 (199)
94 3ux8_A Excinuclease ABC, A sub 97.8 6.7E-06 2.3E-10 74.8 1.6 33 42-79 335-368 (670)
95 4a74_A DNA repair and recombin 97.7 1.1E-05 3.8E-10 62.2 2.5 25 57-81 22-47 (231)
96 2dpy_A FLII, flagellum-specifi 97.7 2.4E-06 8.1E-11 74.7 -1.6 49 30-84 131-182 (438)
97 3ozx_A RNAse L inhibitor; ATP 97.7 1.4E-05 4.8E-10 71.5 3.1 26 59-84 24-50 (538)
98 3asz_A Uridine kinase; cytidin 97.7 7.8E-06 2.7E-10 62.9 1.2 23 60-82 6-29 (211)
99 1np6_A Molybdopterin-guanine d 97.7 8.9E-06 3E-10 62.7 1.4 84 61-148 7-95 (174)
100 3ux8_A Excinuclease ABC, A sub 97.7 9.4E-06 3.2E-10 73.8 1.5 30 42-76 31-60 (670)
101 4dey_A Voltage-dependent L-typ 97.7 5.5E-06 1.9E-10 70.5 -0.2 97 61-166 143-252 (337)
102 2eyu_A Twitching motility prot 97.7 6.7E-06 2.3E-10 67.0 0.2 23 59-81 24-47 (261)
103 2ehv_A Hypothetical protein PH 97.6 1.6E-05 5.3E-10 62.1 2.1 25 56-80 26-51 (251)
104 3uie_A Adenylyl-sulfate kinase 97.6 1.4E-05 4.9E-10 61.4 1.8 22 60-81 25-47 (200)
105 1kag_A SKI, shikimate kinase I 97.6 1.2E-05 4E-10 59.8 1.2 23 60-82 4-27 (173)
106 2bdt_A BH3686; alpha-beta prot 97.6 1.2E-05 4.2E-10 60.9 1.2 22 60-81 2-24 (189)
107 2og2_A Putative signal recogni 97.6 1.5E-05 5E-10 68.2 1.6 31 47-82 149-180 (359)
108 2gza_A Type IV secretion syste 97.6 7.7E-06 2.6E-10 69.4 -0.1 32 46-82 166-198 (361)
109 4eun_A Thermoresistant glucoki 97.6 1.7E-05 5.7E-10 61.1 1.7 22 60-81 29-51 (200)
110 3aez_A Pantothenate kinase; tr 97.6 2E-05 6.8E-10 65.8 2.3 25 58-82 88-113 (312)
111 2pt7_A CAG-ALFA; ATPase, prote 97.6 9E-06 3.1E-10 68.3 0.2 31 47-82 163-194 (330)
112 1u0l_A Probable GTPase ENGC; p 97.6 2.3E-05 7.8E-10 64.7 2.5 24 59-82 168-192 (301)
113 2yhs_A FTSY, cell division pro 97.6 1.6E-05 5.5E-10 70.9 1.7 32 46-82 284-316 (503)
114 1rj9_A FTSY, signal recognitio 97.6 1.7E-05 5.9E-10 66.0 1.6 24 59-82 101-125 (304)
115 2iw3_A Elongation factor 3A; a 97.6 1.3E-05 4.3E-10 76.6 0.7 41 35-80 440-482 (986)
116 3nwj_A ATSK2; P loop, shikimat 97.6 3.1E-06 1.1E-10 68.8 -3.0 47 30-81 17-70 (250)
117 2obl_A ESCN; ATPase, hydrolase 97.6 6.2E-06 2.1E-10 70.0 -1.5 48 30-83 45-95 (347)
118 2bbw_A Adenylate kinase 4, AK4 97.5 1.2E-05 4.1E-10 63.8 0.1 20 61-80 28-48 (246)
119 1lw7_A Transcriptional regulat 97.5 1.4E-05 4.8E-10 67.4 0.5 24 60-83 170-194 (365)
120 1qhx_A CPT, protein (chloramph 97.5 2.6E-05 9.1E-10 58.1 1.9 24 60-83 3-28 (178)
121 2vp4_A Deoxynucleoside kinase; 97.5 4.3E-05 1.5E-09 60.2 2.9 24 59-82 19-43 (230)
122 2rcn_A Probable GTPase ENGC; Y 97.5 8.1E-06 2.8E-10 69.8 -1.4 23 59-81 214-237 (358)
123 1mky_A Probable GTP-binding pr 97.5 3.2E-05 1.1E-09 66.9 2.2 53 61-114 181-237 (439)
124 1ye8_A Protein THEP1, hypothet 97.5 2.5E-05 8.7E-10 59.9 1.3 21 62-82 2-23 (178)
125 3sop_A Neuronal-specific septi 97.5 2.3E-05 7.7E-10 64.1 1.0 21 62-82 4-25 (270)
126 1tq4_A IIGP1, interferon-induc 97.5 8.3E-06 2.8E-10 71.0 -1.7 39 44-82 38-92 (413)
127 2yv5_A YJEQ protein; hydrolase 97.5 4.4E-05 1.5E-09 63.1 2.8 19 59-77 164-182 (302)
128 1knq_A Gluconate kinase; ALFA/ 97.5 3.4E-05 1.2E-09 57.5 1.6 22 60-81 8-30 (175)
129 4e22_A Cytidylate kinase; P-lo 97.4 4E-05 1.4E-09 61.4 1.9 21 60-80 27-48 (252)
130 2qag_B Septin-6, protein NEDD5 97.4 1.9E-05 6.4E-10 69.1 -0.2 33 45-82 30-65 (427)
131 1cke_A CK, MSSA, protein (cyti 97.4 4.8E-05 1.6E-09 58.8 1.8 21 61-81 6-27 (227)
132 2npi_A Protein CLP1; CLP1-PCF1 97.4 2.2E-05 7.5E-10 69.0 -0.2 46 28-83 116-162 (460)
133 4eaq_A DTMP kinase, thymidylat 97.4 6.3E-05 2.2E-09 59.8 2.2 39 59-100 25-65 (229)
134 2qt1_A Nicotinamide riboside k 97.4 6.4E-05 2.2E-09 57.7 2.1 23 59-81 20-43 (207)
135 1tf7_A KAIC; homohexamer, hexa 97.3 1.9E-05 6.4E-10 69.9 -1.2 37 41-82 24-64 (525)
136 3e70_C DPA, signal recognition 97.3 4.4E-05 1.5E-09 64.3 1.0 23 59-81 128-151 (328)
137 2wwf_A Thymidilate kinase, put 97.3 5.4E-05 1.8E-09 57.8 1.3 38 60-99 10-49 (212)
138 3kb2_A SPBC2 prophage-derived 97.3 6.1E-05 2.1E-09 55.4 1.4 20 62-81 3-23 (173)
139 2i3b_A HCR-ntpase, human cance 97.3 5E-05 1.7E-09 59.0 0.9 21 61-81 2-23 (189)
140 3ec2_A DNA replication protein 97.3 7E-05 2.4E-09 56.3 1.7 22 60-81 38-60 (180)
141 1cr0_A DNA primase/helicase; R 97.3 2.6E-05 8.8E-10 63.4 -0.8 34 43-81 23-57 (296)
142 1sq5_A Pantothenate kinase; P- 97.3 6.8E-05 2.3E-09 62.0 1.7 23 59-81 79-102 (308)
143 1xjc_A MOBB protein homolog; s 97.3 7.4E-05 2.5E-09 57.5 1.7 23 61-83 5-29 (169)
144 1ly1_A Polynucleotide kinase; 97.3 7.5E-05 2.6E-09 55.3 1.7 22 60-81 2-24 (181)
145 1t9h_A YLOQ, probable GTPase E 97.3 3.3E-05 1.1E-09 64.7 -0.3 23 59-81 172-195 (307)
146 1gtv_A TMK, thymidylate kinase 97.3 4.2E-05 1.4E-09 58.5 0.2 33 62-95 2-36 (214)
147 3v9p_A DTMP kinase, thymidylat 97.3 5.3E-05 1.8E-09 60.7 0.7 41 59-100 24-69 (227)
148 3tlx_A Adenylate kinase 2; str 97.3 4E-05 1.4E-09 61.1 -0.1 22 60-81 29-51 (243)
149 3t61_A Gluconokinase; PSI-biol 97.2 6.9E-05 2.4E-09 57.3 1.1 21 61-81 19-40 (202)
150 2qm8_A GTPase/ATPase; G protei 97.2 5.7E-05 1.9E-09 63.5 0.6 45 31-80 30-76 (337)
151 2f1r_A Molybdopterin-guanine d 97.2 1.9E-05 6.6E-10 60.5 -2.2 23 61-83 3-26 (171)
152 1y63_A LMAJ004144AAA protein; 97.2 0.00011 3.9E-09 55.7 2.0 22 60-81 10-32 (184)
153 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00011 3.8E-09 56.3 1.7 20 58-77 21-40 (235)
154 1kht_A Adenylate kinase; phosp 97.2 0.00011 3.7E-09 54.9 1.6 22 60-81 3-25 (192)
155 3lw7_A Adenylate kinase relate 97.2 0.00012 4E-09 53.4 1.7 20 61-80 2-22 (179)
156 4edh_A DTMP kinase, thymidylat 97.2 8.7E-05 3E-09 58.6 1.0 39 59-99 5-45 (213)
157 2v54_A DTMP kinase, thymidylat 97.2 0.00011 3.9E-09 55.6 1.7 22 60-81 4-26 (204)
158 3lv8_A DTMP kinase, thymidylat 97.2 7.3E-05 2.5E-09 60.2 0.6 39 60-99 27-67 (236)
159 1rz3_A Hypothetical protein rb 97.2 0.00012 3.9E-09 56.5 1.7 22 60-81 22-44 (201)
160 2rhm_A Putative kinase; P-loop 97.2 0.00012 4.2E-09 54.8 1.8 23 59-81 4-27 (193)
161 2kjq_A DNAA-related protein; s 97.1 0.00012 4.2E-09 54.4 1.6 23 59-81 35-58 (149)
162 3kta_A Chromosome segregation 97.1 0.00014 4.8E-09 54.5 1.9 16 62-77 28-43 (182)
163 3trf_A Shikimate kinase, SK; a 97.1 0.00012 4.2E-09 54.8 1.6 22 60-81 5-27 (185)
164 1jjv_A Dephospho-COA kinase; P 97.1 0.00014 4.6E-09 55.7 1.8 21 61-81 3-24 (206)
165 1nij_A Hypothetical protein YJ 97.1 0.00016 5.4E-09 60.1 2.2 21 61-81 5-26 (318)
166 1nks_A Adenylate kinase; therm 97.1 0.00011 3.8E-09 54.8 1.1 22 62-83 3-26 (194)
167 2z0h_A DTMP kinase, thymidylat 97.1 0.00011 3.9E-09 55.2 1.2 36 62-99 2-39 (197)
168 2ewv_A Twitching motility prot 97.1 0.00014 4.6E-09 62.0 1.7 25 57-81 133-158 (372)
169 2pez_A Bifunctional 3'-phospho 97.1 0.00015 5.2E-09 54.3 1.7 23 59-81 4-27 (179)
170 1nn5_A Similar to deoxythymidy 97.1 0.00013 4.5E-09 55.6 1.3 22 60-81 9-31 (215)
171 3tqc_A Pantothenate kinase; bi 97.1 0.00015 5E-09 61.1 1.7 22 60-81 92-114 (321)
172 1odf_A YGR205W, hypothetical 3 97.1 0.00016 5.5E-09 59.7 1.7 22 60-81 31-53 (290)
173 3cm0_A Adenylate kinase; ATP-b 97.1 0.00015 5.2E-09 54.2 1.3 22 60-81 4-26 (186)
174 1p9r_A General secretion pathw 97.1 0.00018 6.1E-09 62.5 1.9 24 59-82 166-191 (418)
175 3ld9_A DTMP kinase, thymidylat 97.0 0.00014 4.8E-09 58.2 1.0 41 59-99 20-62 (223)
176 2cvh_A DNA repair and recombin 97.0 0.00022 7.6E-09 54.4 2.1 25 57-81 17-42 (220)
177 2qag_C Septin-7; cell cycle, c 97.0 0.00016 5.4E-09 62.9 1.3 41 29-80 10-52 (418)
178 2gj8_A MNME, tRNA modification 97.0 0.00014 4.7E-09 54.2 0.8 17 61-77 5-21 (172)
179 1ni3_A YCHF GTPase, YCHF GTP-b 97.0 0.00016 5.6E-09 62.4 1.3 44 58-101 18-62 (392)
180 2c95_A Adenylate kinase 1; tra 97.0 0.0002 6.9E-09 53.8 1.7 22 60-81 9-31 (196)
181 2plr_A DTMP kinase, probable t 97.0 0.00022 7.4E-09 54.1 1.7 22 60-81 4-26 (213)
182 1n0w_A DNA repair protein RAD5 97.0 0.00024 8.1E-09 55.1 1.8 21 57-77 21-41 (243)
183 3szr_A Interferon-induced GTP- 97.0 0.00013 4.6E-09 65.9 0.3 21 62-82 47-68 (608)
184 1qhl_A Protein (cell division 97.0 2.8E-05 9.5E-10 62.4 -3.8 20 62-81 29-49 (227)
185 1m7g_A Adenylylsulfate kinase; 96.9 0.00026 9E-09 54.6 1.9 24 58-81 23-47 (211)
186 2if2_A Dephospho-COA kinase; a 96.9 0.00022 7.5E-09 54.3 1.4 20 62-81 3-23 (204)
187 1qf9_A UMP/CMP kinase, protein 96.9 0.00025 8.6E-09 52.8 1.6 23 59-81 5-28 (194)
188 3iij_A Coilin-interacting nucl 96.9 0.00021 7.3E-09 53.5 1.2 21 60-80 11-32 (180)
189 3jvv_A Twitching mobility prot 96.9 0.00022 7.6E-09 60.6 1.5 19 59-77 122-140 (356)
190 2jaq_A Deoxyguanosine kinase; 96.9 0.00023 8E-09 53.6 1.5 20 62-81 2-22 (205)
191 3pih_A Uvrabc system protein A 96.9 0.00023 7.8E-09 67.5 1.4 30 43-77 598-627 (916)
192 1uf9_A TT1252 protein; P-loop, 96.9 0.00028 9.6E-09 53.3 1.7 23 60-82 8-31 (203)
193 2ygr_A Uvrabc system protein A 96.9 0.00024 8.2E-09 67.8 1.5 30 43-77 656-685 (993)
194 1tev_A UMP-CMP kinase; ploop, 96.9 0.00028 9.6E-09 52.7 1.6 22 60-81 3-25 (196)
195 2bwj_A Adenylate kinase 5; pho 96.9 0.00023 7.7E-09 53.6 1.0 23 59-81 11-34 (199)
196 2yvu_A Probable adenylyl-sulfa 96.9 0.00031 1.1E-08 52.9 1.7 23 59-81 12-35 (186)
197 1vht_A Dephospho-COA kinase; s 96.9 0.00033 1.1E-08 54.1 1.8 22 60-81 4-26 (218)
198 1zak_A Adenylate kinase; ATP:A 96.9 0.00025 8.5E-09 55.0 1.0 22 60-81 5-27 (222)
199 2oap_1 GSPE-2, type II secreti 96.8 0.00033 1.1E-08 62.3 1.7 25 59-83 259-285 (511)
200 2iyv_A Shikimate kinase, SK; t 96.8 0.00026 8.8E-09 53.1 0.8 21 61-81 3-24 (184)
201 4tmk_A Protein (thymidylate ki 96.8 0.00024 8.3E-09 56.1 0.6 38 60-99 3-43 (213)
202 2r6f_A Excinuclease ABC subuni 96.8 0.00023 8E-09 67.8 0.6 30 43-77 638-667 (972)
203 1e6c_A Shikimate kinase; phosp 96.8 0.00034 1.2E-08 51.6 1.2 21 61-81 3-24 (173)
204 1svm_A Large T antigen; AAA+ f 96.8 0.00041 1.4E-08 59.5 1.9 25 57-81 166-191 (377)
205 2qmh_A HPR kinase/phosphorylas 96.8 0.0005 1.7E-08 54.7 2.2 23 60-82 34-58 (205)
206 2p5t_B PEZT; postsegregational 96.8 0.00035 1.2E-08 55.8 1.2 23 59-81 31-54 (253)
207 2vf7_A UVRA2, excinuclease ABC 96.8 0.00024 8.2E-09 66.8 0.3 29 44-77 512-540 (842)
208 2vli_A Antibiotic resistance p 96.8 0.00037 1.3E-08 51.8 1.3 21 60-80 5-26 (183)
209 3umf_A Adenylate kinase; rossm 96.8 0.00049 1.7E-08 54.7 2.1 28 54-81 23-51 (217)
210 1zd8_A GTP:AMP phosphotransfer 96.8 0.00042 1.4E-08 54.0 1.6 22 60-81 7-29 (227)
211 1via_A Shikimate kinase; struc 96.7 0.00033 1.1E-08 52.3 0.9 20 62-81 6-26 (175)
212 3lxx_A GTPase IMAP family memb 96.7 0.00046 1.6E-08 54.1 1.7 20 62-81 31-52 (239)
213 1oix_A RAS-related protein RAB 96.7 0.00047 1.6E-08 52.1 1.6 16 62-77 31-46 (191)
214 2cdn_A Adenylate kinase; phosp 96.7 0.00053 1.8E-08 52.2 1.9 23 59-81 19-42 (201)
215 1nlf_A Regulatory protein REPA 96.7 0.00045 1.6E-08 55.6 1.4 21 57-77 27-47 (279)
216 1ukz_A Uridylate kinase; trans 96.7 0.00057 1.9E-08 52.0 1.9 21 60-80 15-36 (203)
217 3cr8_A Sulfate adenylyltranfer 96.7 0.00036 1.2E-08 62.6 0.8 25 57-81 366-391 (552)
218 3ake_A Cytidylate kinase; CMP 96.7 0.00055 1.9E-08 51.8 1.7 21 61-81 3-24 (208)
219 4aby_A DNA repair protein RECN 96.7 0.00025 8.4E-09 60.0 -0.4 21 58-79 59-80 (415)
220 2f9l_A RAB11B, member RAS onco 96.6 0.00048 1.7E-08 52.1 1.2 16 62-77 7-22 (199)
221 1ltq_A Polynucleotide kinase; 96.6 0.00064 2.2E-08 54.9 1.9 22 60-81 2-24 (301)
222 2zej_A Dardarin, leucine-rich 96.6 0.00067 2.3E-08 50.7 1.8 19 62-80 4-24 (184)
223 2qnr_A Septin-2, protein NEDD5 96.6 0.00036 1.2E-08 57.6 0.3 15 63-77 21-35 (301)
224 3r20_A Cytidylate kinase; stru 96.6 0.00064 2.2E-08 54.7 1.8 21 61-81 10-31 (233)
225 1aky_A Adenylate kinase; ATP:A 96.6 0.00066 2.3E-08 52.5 1.8 22 60-81 4-26 (220)
226 3thx_B DNA mismatch repair pro 96.6 0.00029 9.9E-09 66.8 -0.4 29 47-80 665-694 (918)
227 2qtf_A Protein HFLX, GTP-bindi 96.6 0.0006 2E-08 58.0 1.5 44 62-107 181-228 (364)
228 3fb4_A Adenylate kinase; psych 96.6 0.00065 2.2E-08 52.1 1.4 19 62-80 2-21 (216)
229 3t1o_A Gliding protein MGLA; G 96.6 0.0021 7E-08 47.5 4.1 16 62-77 16-31 (198)
230 2wji_A Ferrous iron transport 96.5 0.00071 2.4E-08 49.6 1.5 19 62-80 5-25 (165)
231 1pzn_A RAD51, DNA repair and r 96.5 0.00069 2.4E-08 57.1 1.6 27 55-81 126-153 (349)
232 2pbr_A DTMP kinase, thymidylat 96.5 0.00068 2.3E-08 50.6 1.4 20 62-81 2-22 (195)
233 2dyk_A GTP-binding protein; GT 96.5 0.00062 2.1E-08 48.8 1.1 21 62-82 3-25 (161)
234 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.00093 3.2E-08 49.5 2.1 17 61-77 24-40 (149)
235 1ega_A Protein (GTP-binding pr 96.5 0.00058 2E-08 56.2 1.1 21 61-81 9-31 (301)
236 1uj2_A Uridine-cytidine kinase 96.5 0.00079 2.7E-08 53.5 1.7 22 60-81 22-44 (252)
237 1zu4_A FTSY; GTPase, signal re 96.5 0.0011 3.7E-08 55.5 2.5 26 47-77 97-122 (320)
238 3dl0_A Adenylate kinase; phosp 96.5 0.00079 2.7E-08 51.7 1.5 20 62-81 2-22 (216)
239 3lxw_A GTPase IMAP family memb 96.5 0.00079 2.7E-08 53.6 1.6 20 62-81 23-44 (247)
240 1ak2_A Adenylate kinase isoenz 96.5 0.00091 3.1E-08 52.4 1.8 22 60-81 16-38 (233)
241 1a7j_A Phosphoribulokinase; tr 96.5 0.00068 2.3E-08 55.7 1.2 22 60-81 5-27 (290)
242 1udx_A The GTP-binding protein 96.5 0.00028 9.4E-09 61.3 -1.4 21 61-81 158-179 (416)
243 3zvl_A Bifunctional polynucleo 96.4 0.0013 4.3E-08 56.6 2.6 24 58-81 256-281 (416)
244 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.001 3.4E-08 53.3 1.9 22 60-81 4-26 (260)
245 1f6b_A SAR1; gtpases, N-termin 96.4 0.00032 1.1E-08 53.4 -1.2 20 62-81 27-48 (198)
246 1ixz_A ATP-dependent metallopr 96.4 0.0011 3.8E-08 52.2 1.9 20 62-81 51-71 (254)
247 1q3t_A Cytidylate kinase; nucl 96.4 0.0011 3.6E-08 52.1 1.8 23 59-81 15-38 (236)
248 1wb9_A DNA mismatch repair pro 96.4 0.00063 2.1E-08 63.6 0.5 23 59-81 606-629 (800)
249 2pt5_A Shikimate kinase, SK; a 96.4 0.001 3.4E-08 48.9 1.4 20 62-81 2-22 (168)
250 3tmk_A Thymidylate kinase; pho 96.4 0.0014 4.7E-08 52.0 2.4 25 59-83 4-30 (216)
251 2dr3_A UPF0273 protein PH0284; 96.4 0.0013 4.6E-08 50.8 2.2 20 58-77 21-40 (247)
252 1in4_A RUVB, holliday junction 96.4 0.00084 2.9E-08 55.7 1.1 21 61-81 52-73 (334)
253 3qf7_A RAD50; ABC-ATPase, ATPa 96.4 0.001 3.4E-08 56.4 1.6 16 62-77 25-40 (365)
254 2wjg_A FEOB, ferrous iron tran 96.4 0.0011 3.7E-08 49.1 1.5 19 62-80 9-29 (188)
255 1w1w_A Structural maintenance 96.4 0.0011 3.8E-08 56.8 1.8 18 60-77 26-43 (430)
256 3thx_A DNA mismatch repair pro 96.4 0.00068 2.3E-08 64.4 0.5 20 60-79 662-682 (934)
257 1vma_A Cell division protein F 96.3 0.0015 5.1E-08 54.4 2.4 23 59-81 103-126 (306)
258 2x8a_A Nuclear valosin-contain 96.3 0.0012 4.2E-08 53.5 1.8 20 63-82 47-67 (274)
259 3be4_A Adenylate kinase; malar 96.3 0.0011 3.9E-08 51.3 1.5 22 60-81 5-27 (217)
260 2px0_A Flagellar biosynthesis 96.3 0.0011 3.8E-08 54.7 1.5 19 59-77 104-122 (296)
261 4dhe_A Probable GTP-binding pr 96.3 0.00069 2.4E-08 51.7 0.2 21 61-81 30-52 (223)
262 1z2a_A RAS-related protein RAB 96.3 0.0022 7.5E-08 46.1 2.9 20 62-81 7-28 (168)
263 2o8b_B DNA mismatch repair pro 96.3 0.0013 4.4E-08 63.0 2.0 20 60-79 789-809 (1022)
264 1e69_A Chromosome segregation 96.3 0.0014 4.7E-08 54.2 2.0 16 62-77 26-41 (322)
265 2f6r_A COA synthase, bifunctio 96.3 0.0013 4.5E-08 53.5 1.8 22 60-81 75-97 (281)
266 1m2o_B GTP-binding protein SAR 96.3 0.0013 4.4E-08 49.5 1.6 20 62-81 25-46 (190)
267 3t34_A Dynamin-related protein 96.2 0.0015 5.2E-08 54.6 2.0 19 62-80 36-56 (360)
268 1zuh_A Shikimate kinase; alpha 96.2 0.0014 4.8E-08 48.4 1.5 21 61-81 8-29 (168)
269 1iy2_A ATP-dependent metallopr 96.2 0.0016 5.5E-08 52.2 1.9 20 62-81 75-95 (278)
270 2xb4_A Adenylate kinase; ATP-b 96.2 0.0014 4.8E-08 51.1 1.4 20 62-81 2-22 (223)
271 1jbk_A CLPB protein; beta barr 96.2 0.0021 7.2E-08 46.8 2.3 23 60-82 43-67 (195)
272 1kao_A RAP2A; GTP-binding prot 96.2 0.0015 5.1E-08 46.7 1.4 20 62-81 5-26 (167)
273 3tqf_A HPR(Ser) kinase; transf 96.2 0.0016 5.6E-08 50.7 1.7 22 60-81 16-39 (181)
274 3pih_A Uvrabc system protein A 96.2 0.0018 6.3E-08 61.4 2.3 28 45-77 14-41 (916)
275 2o5v_A DNA replication and rep 96.1 0.0016 5.4E-08 55.5 1.6 19 62-80 28-47 (359)
276 2nzj_A GTP-binding protein REM 96.1 0.0017 5.9E-08 47.1 1.6 20 62-81 6-27 (175)
277 1lv7_A FTSH; alpha/beta domain 96.1 0.0019 6.4E-08 51.0 1.8 22 60-81 45-67 (257)
278 1p5z_B DCK, deoxycytidine kina 96.1 0.0024 8.4E-08 50.8 2.5 23 59-81 23-46 (263)
279 1ewq_A DNA mismatch repair pro 96.1 0.0016 5.4E-08 60.6 1.6 22 60-81 576-598 (765)
280 2ohf_A Protein OLA1, GTP-bindi 96.1 0.0017 5.8E-08 56.2 1.6 41 60-101 22-63 (396)
281 3b1v_A Ferrous iron uptake tra 96.1 0.0017 5.7E-08 52.9 1.5 20 62-81 5-26 (272)
282 3bos_A Putative DNA replicatio 96.1 0.0024 8.2E-08 48.7 2.3 19 59-77 51-69 (242)
283 3lda_A DNA repair protein RAD5 96.1 0.002 6.7E-08 55.6 2.0 22 56-77 174-195 (400)
284 3q72_A GTP-binding protein RAD 96.1 0.0019 6.6E-08 46.5 1.6 20 62-81 4-25 (166)
285 2ce2_X GTPase HRAS; signaling 96.1 0.0017 5.7E-08 46.3 1.2 20 62-81 5-26 (166)
286 3tw8_B RAS-related protein RAB 96.1 0.0022 7.4E-08 46.7 1.8 20 62-81 11-32 (181)
287 2www_A Methylmalonic aciduria 96.0 0.0023 7.9E-08 53.8 2.1 21 60-80 74-96 (349)
288 3qks_A DNA double-strand break 96.0 0.0024 8.3E-08 49.5 2.1 17 61-77 24-40 (203)
289 1ek0_A Protein (GTP-binding pr 96.0 0.0018 6.3E-08 46.5 1.3 20 62-81 5-26 (170)
290 1ky3_A GTP-binding protein YPT 96.0 0.0019 6.4E-08 47.1 1.4 20 62-81 10-31 (182)
291 2lkc_A Translation initiation 96.0 0.0026 8.9E-08 46.3 2.1 21 61-81 9-31 (178)
292 3qkt_A DNA double-strand break 96.0 0.0025 8.5E-08 53.1 2.2 17 61-77 24-40 (339)
293 1e4v_A Adenylate kinase; trans 96.0 0.0018 6.2E-08 49.9 1.3 20 62-81 2-22 (214)
294 2erx_A GTP-binding protein DI- 96.0 0.0021 7.3E-08 46.2 1.6 20 62-81 5-26 (172)
295 2vf7_A UVRA2, excinuclease ABC 96.0 0.0018 6.1E-08 60.9 1.4 21 57-77 33-53 (842)
296 1u8z_A RAS-related protein RAL 96.0 0.002 6.7E-08 46.1 1.3 20 62-81 6-27 (168)
297 3bc1_A RAS-related protein RAB 96.0 0.0037 1.3E-07 45.8 2.8 19 62-80 13-33 (195)
298 1z0j_A RAB-22, RAS-related pro 96.0 0.0021 7.1E-08 46.3 1.4 20 62-81 8-29 (170)
299 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.0021 7E-08 46.8 1.4 20 62-81 9-30 (177)
300 1z08_A RAS-related protein RAB 96.0 0.0021 7E-08 46.4 1.4 20 62-81 8-29 (170)
301 2ged_A SR-beta, signal recogni 96.0 0.0026 9E-08 47.2 2.0 21 61-81 49-71 (193)
302 1svi_A GTP-binding protein YSX 96.0 0.0034 1.2E-07 46.6 2.5 21 61-81 24-46 (195)
303 1g16_A RAS-related protein SEC 96.0 0.002 6.8E-08 46.4 1.2 20 62-81 5-26 (170)
304 3sr0_A Adenylate kinase; phosp 96.0 0.0021 7.2E-08 50.4 1.4 21 62-82 2-23 (206)
305 3iev_A GTP-binding protein ERA 96.0 0.0019 6.6E-08 53.1 1.2 37 61-98 11-49 (308)
306 1moz_A ARL1, ADP-ribosylation 96.0 0.0021 7.2E-08 47.2 1.3 20 62-81 20-41 (183)
307 1c1y_A RAS-related protein RAP 95.9 0.0022 7.4E-08 46.1 1.3 20 62-81 5-26 (167)
308 3gee_A MNME, tRNA modification 95.9 0.0028 9.6E-08 55.7 2.3 55 62-117 235-293 (476)
309 1fzq_A ADP-ribosylation factor 95.9 0.0025 8.4E-08 47.5 1.6 20 62-81 18-39 (181)
310 2grj_A Dephospho-COA kinase; T 95.9 0.0021 7.2E-08 49.8 1.3 23 59-81 11-34 (192)
311 2fn4_A P23, RAS-related protei 95.9 0.0022 7.4E-08 46.7 1.2 20 62-81 11-32 (181)
312 1tf7_A KAIC; homohexamer, hexa 95.9 0.0024 8.4E-08 56.3 1.8 27 55-81 276-303 (525)
313 2p65_A Hypothetical protein PF 95.9 0.0026 8.7E-08 46.5 1.5 23 60-82 43-67 (187)
314 1r2q_A RAS-related protein RAB 95.9 0.0024 8.1E-08 45.8 1.3 20 62-81 8-29 (170)
315 3clv_A RAB5 protein, putative; 95.9 0.0024 8.4E-08 47.0 1.4 20 62-81 9-30 (208)
316 2hxs_A RAB-26, RAS-related pro 95.9 0.0028 9.6E-08 46.1 1.7 20 62-81 8-29 (178)
317 1z0f_A RAB14, member RAS oncog 95.9 0.0023 8E-08 46.4 1.2 20 62-81 17-38 (179)
318 3ihw_A Centg3; RAS, centaurin, 95.8 0.0025 8.5E-08 47.8 1.4 20 62-81 22-43 (184)
319 4dsu_A GTPase KRAS, isoform 2B 95.8 0.0026 8.8E-08 46.7 1.4 20 62-81 6-27 (189)
320 2ygr_A Uvrabc system protein A 95.8 0.0022 7.7E-08 61.2 1.3 28 45-77 36-63 (993)
321 3q85_A GTP-binding protein REM 95.8 0.003 1E-07 45.6 1.7 16 62-77 4-19 (169)
322 1sxj_E Activator 1 40 kDa subu 95.8 0.0031 1.1E-07 51.6 1.9 19 63-81 39-58 (354)
323 2r6f_A Excinuclease ABC subuni 95.8 0.0023 7.9E-08 61.0 1.3 28 45-77 34-61 (972)
324 2cxx_A Probable GTP-binding pr 95.8 0.0025 8.5E-08 46.9 1.2 20 62-81 3-24 (190)
325 2w58_A DNAI, primosome compone 95.8 0.0037 1.3E-07 47.3 2.1 17 61-77 55-71 (202)
326 2y8e_A RAB-protein 6, GH09086P 95.8 0.0026 8.9E-08 46.1 1.2 19 62-80 16-36 (179)
327 3cf0_A Transitional endoplasmi 95.8 0.0032 1.1E-07 51.3 1.8 23 59-81 48-71 (301)
328 2ocp_A DGK, deoxyguanosine kin 95.8 0.0031 1E-07 49.5 1.6 24 60-83 2-27 (241)
329 1njg_A DNA polymerase III subu 95.7 0.0039 1.3E-07 46.8 2.1 17 61-77 46-62 (250)
330 3pqc_A Probable GTP-binding pr 95.7 0.0035 1.2E-07 46.2 1.8 21 62-82 25-47 (195)
331 2h92_A Cytidylate kinase; ross 95.7 0.0026 9E-08 48.8 1.1 21 61-81 4-25 (219)
332 2oil_A CATX-8, RAS-related pro 95.7 0.003 1E-07 47.0 1.3 20 62-81 27-48 (193)
333 2wsm_A Hydrogenase expression/ 95.7 0.0033 1.1E-07 48.0 1.6 21 61-81 31-53 (221)
334 1wf3_A GTP-binding protein; GT 95.7 0.0033 1.1E-07 51.8 1.6 20 62-81 9-30 (301)
335 1ko7_A HPR kinase/phosphatase; 95.7 0.0034 1.2E-07 52.7 1.7 22 60-81 144-167 (314)
336 2g6b_A RAS-related protein RAB 95.7 0.0032 1.1E-07 45.9 1.3 20 62-81 12-33 (180)
337 3con_A GTPase NRAS; structural 95.7 0.0032 1.1E-07 46.6 1.3 20 62-81 23-44 (190)
338 2fu5_C RAS-related protein RAB 95.7 0.0036 1.2E-07 46.0 1.6 20 62-81 10-31 (183)
339 2bov_A RAla, RAS-related prote 95.7 0.0032 1.1E-07 47.0 1.3 20 62-81 16-37 (206)
340 2ew1_A RAS-related protein RAB 95.7 0.0054 1.9E-07 46.8 2.6 20 62-81 28-49 (201)
341 2hjg_A GTP-binding protein ENG 95.7 0.006 2.1E-07 52.4 3.2 54 61-115 176-233 (436)
342 2a9k_A RAS-related protein RAL 95.7 0.0033 1.1E-07 45.9 1.3 20 62-81 20-41 (187)
343 3cbq_A GTP-binding protein REM 95.7 0.0041 1.4E-07 47.1 1.9 16 62-77 25-40 (195)
344 3m6a_A ATP-dependent protease 95.7 0.0034 1.2E-07 55.8 1.6 22 60-81 108-130 (543)
345 2bme_A RAB4A, RAS-related prot 95.6 0.0031 1.1E-07 46.3 1.2 20 62-81 12-33 (186)
346 1r8s_A ADP-ribosylation factor 95.6 0.004 1.4E-07 44.7 1.7 19 63-81 3-23 (164)
347 1ksh_A ARF-like protein 2; sma 95.6 0.004 1.4E-07 45.9 1.8 20 62-81 20-41 (186)
348 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.0041 1.4E-07 48.6 1.9 22 60-81 39-61 (262)
349 3b9p_A CG5977-PA, isoform A; A 95.6 0.0038 1.3E-07 50.1 1.8 22 60-81 54-76 (297)
350 2efe_B Small GTP-binding prote 95.6 0.0034 1.2E-07 45.8 1.4 20 62-81 14-35 (181)
351 1upt_A ARL1, ADP-ribosylation 95.6 0.0041 1.4E-07 44.8 1.7 20 62-81 9-30 (171)
352 3llm_A ATP-dependent RNA helic 95.6 0.0047 1.6E-07 48.3 2.2 18 60-77 76-93 (235)
353 4bas_A ADP-ribosylation factor 95.6 0.0043 1.5E-07 46.1 1.8 22 60-81 17-40 (199)
354 2h57_A ADP-ribosylation factor 95.6 0.0045 1.5E-07 46.0 1.9 21 62-82 23-45 (190)
355 3iby_A Ferrous iron transport 95.6 0.0024 8.3E-08 51.3 0.4 20 62-81 3-24 (256)
356 1m7b_A RND3/RHOE small GTP-bin 95.6 0.0034 1.2E-07 46.5 1.2 20 62-81 9-30 (184)
357 2hf9_A Probable hydrogenase ni 95.6 0.0041 1.4E-07 47.6 1.6 21 61-81 39-61 (226)
358 3kkq_A RAS-related protein M-R 95.6 0.0037 1.3E-07 45.9 1.3 20 62-81 20-41 (183)
359 1nrj_B SR-beta, signal recogni 95.6 0.0047 1.6E-07 46.9 1.9 20 62-81 14-35 (218)
360 1vg8_A RAS-related protein RAB 95.6 0.0038 1.3E-07 46.8 1.4 20 62-81 10-31 (207)
361 1jal_A YCHF protein; nucleotid 95.5 0.0059 2E-07 52.1 2.7 38 62-101 4-43 (363)
362 1zbd_A Rabphilin-3A; G protein 95.5 0.0041 1.4E-07 46.6 1.5 20 62-81 10-31 (203)
363 3t5g_A GTP-binding protein RHE 95.5 0.0036 1.2E-07 45.9 1.2 18 62-79 8-27 (181)
364 3h4m_A Proteasome-activating n 95.5 0.0045 1.5E-07 49.2 1.8 23 59-81 50-73 (285)
365 2hjg_A GTP-binding protein ENG 95.5 0.0045 1.5E-07 53.2 2.0 53 62-115 5-61 (436)
366 2il1_A RAB12; G-protein, GDP, 95.5 0.0045 1.5E-07 46.3 1.7 20 62-81 28-49 (192)
367 4dcu_A GTP-binding protein ENG 95.5 0.0035 1.2E-07 54.2 1.2 49 62-111 25-77 (456)
368 1ls1_A Signal recognition part 95.5 0.0056 1.9E-07 50.3 2.4 23 59-81 97-120 (295)
369 4djt_A GTP-binding nuclear pro 95.5 0.0051 1.8E-07 46.7 2.0 20 62-81 13-34 (218)
370 3tkl_A RAS-related protein RAB 95.5 0.0041 1.4E-07 46.1 1.3 20 62-81 18-39 (196)
371 1z06_A RAS-related protein RAB 95.5 0.0042 1.4E-07 46.1 1.4 20 62-81 22-43 (189)
372 2gf9_A RAS-related protein RAB 95.5 0.0044 1.5E-07 46.0 1.5 20 62-81 24-45 (189)
373 3l0i_B RAS-related protein RAB 95.5 0.0055 1.9E-07 46.1 2.0 20 62-81 35-56 (199)
374 3c5c_A RAS-like protein 12; GD 95.5 0.0042 1.5E-07 46.4 1.4 20 62-81 23-44 (187)
375 3gj0_A GTP-binding nuclear pro 95.5 0.0018 6E-08 49.6 -0.8 20 62-81 17-38 (221)
376 1mh1_A RAC1; GTP-binding, GTPa 95.4 0.0051 1.7E-07 44.9 1.7 19 62-80 7-27 (186)
377 1x3s_A RAS-related protein RAB 95.4 0.0078 2.7E-07 44.4 2.8 20 62-81 17-38 (195)
378 2iwr_A Centaurin gamma 1; ANK 95.4 0.0033 1.1E-07 46.0 0.7 20 62-81 9-30 (178)
379 2fg5_A RAB-22B, RAS-related pr 95.4 0.0042 1.5E-07 46.4 1.3 20 62-81 25-46 (192)
380 2gf0_A GTP-binding protein DI- 95.4 0.0043 1.5E-07 46.1 1.2 20 62-81 10-31 (199)
381 2a5j_A RAS-related protein RAB 95.4 0.0044 1.5E-07 46.2 1.3 20 62-81 23-44 (191)
382 3k53_A Ferrous iron transport 95.4 0.0045 1.5E-07 49.5 1.4 20 62-81 5-26 (271)
383 3hr8_A Protein RECA; alpha and 95.4 0.0054 1.8E-07 52.2 2.0 27 55-81 56-84 (356)
384 4hlc_A DTMP kinase, thymidylat 95.4 0.0049 1.7E-07 48.1 1.6 37 59-98 1-39 (205)
385 1mky_A Probable GTP-binding pr 95.4 0.0049 1.7E-07 53.0 1.7 49 62-111 3-55 (439)
386 2atv_A RERG, RAS-like estrogen 95.4 0.0047 1.6E-07 46.2 1.4 20 62-81 30-51 (196)
387 2bcg_Y Protein YP2, GTP-bindin 95.4 0.0044 1.5E-07 46.6 1.2 19 62-80 10-30 (206)
388 2qu8_A Putative nucleolar GTP- 95.4 0.0068 2.3E-07 46.8 2.3 20 62-81 31-52 (228)
389 2o52_A RAS-related protein RAB 95.4 0.0047 1.6E-07 46.6 1.4 20 62-81 27-48 (200)
390 1zj6_A ADP-ribosylation factor 95.4 0.0049 1.7E-07 45.7 1.4 20 62-81 18-39 (187)
391 2fh5_B SR-beta, signal recogni 95.3 0.0048 1.7E-07 46.7 1.3 20 62-81 9-30 (214)
392 2cjw_A GTP-binding protein GEM 95.3 0.0058 2E-07 46.1 1.7 18 62-79 8-27 (192)
393 2b6h_A ADP-ribosylation factor 95.3 0.0056 1.9E-07 46.0 1.6 20 62-81 31-52 (192)
394 3dz8_A RAS-related protein RAB 95.3 0.0044 1.5E-07 46.2 1.0 20 62-81 25-46 (191)
395 1l8q_A Chromosomal replication 95.3 0.0041 1.4E-07 50.8 0.9 21 60-80 37-58 (324)
396 1knx_A Probable HPR(Ser) kinas 95.3 0.0058 2E-07 51.3 1.9 22 60-81 147-170 (312)
397 3oes_A GTPase rhebl1; small GT 95.3 0.0047 1.6E-07 46.5 1.2 20 62-81 26-47 (201)
398 1zd9_A ADP-ribosylation factor 95.3 0.0051 1.7E-07 45.8 1.3 20 62-81 24-45 (188)
399 2q3h_A RAS homolog gene family 95.3 0.0054 1.9E-07 45.9 1.5 20 62-81 22-43 (201)
400 3bwd_D RAC-like GTP-binding pr 95.3 0.0061 2.1E-07 44.5 1.7 20 62-81 10-31 (182)
401 2qby_A CDC6 homolog 1, cell di 95.3 0.0057 1.9E-07 49.9 1.7 22 60-81 45-68 (386)
402 2p5s_A RAS and EF-hand domain 95.3 0.0052 1.8E-07 46.2 1.3 20 62-81 30-51 (199)
403 1sxj_C Activator 1 40 kDa subu 95.3 0.0039 1.3E-07 51.4 0.7 29 50-81 39-68 (340)
404 3cph_A RAS-related protein SEC 95.3 0.0052 1.8E-07 46.2 1.3 20 62-81 22-43 (213)
405 3reg_A RHO-like small GTPase; 95.3 0.0053 1.8E-07 45.8 1.3 20 62-81 25-46 (194)
406 2dby_A GTP-binding protein; GD 95.3 0.0032 1.1E-07 53.7 0.1 16 62-77 3-18 (368)
407 2yc2_C IFT27, small RAB-relate 95.2 0.0039 1.3E-07 46.5 0.5 20 62-81 22-43 (208)
408 2f7s_A C25KG, RAS-related prot 95.2 0.0061 2.1E-07 46.2 1.6 20 62-81 27-48 (217)
409 2h17_A ADP-ribosylation factor 95.2 0.0048 1.6E-07 45.6 0.9 20 62-81 23-44 (181)
410 2p67_A LAO/AO transport system 95.2 0.007 2.4E-07 50.5 2.0 18 60-77 56-73 (341)
411 2j1l_A RHO-related GTP-binding 95.2 0.0061 2.1E-07 46.6 1.4 20 62-81 36-57 (214)
412 2xtp_A GTPase IMAP family memb 95.1 0.0062 2.1E-07 48.0 1.4 20 62-81 24-45 (260)
413 2x77_A ADP-ribosylation factor 95.1 0.0062 2.1E-07 45.1 1.3 20 62-81 24-45 (189)
414 3n70_A Transport activator; si 95.1 0.0066 2.3E-07 44.1 1.5 20 62-81 26-46 (145)
415 4fcw_A Chaperone protein CLPB; 95.1 0.0069 2.3E-07 48.6 1.7 20 62-81 49-69 (311)
416 1fnn_A CDC6P, cell division co 95.1 0.0083 2.8E-07 49.3 2.2 21 62-82 46-68 (389)
417 2fv8_A H6, RHO-related GTP-bin 95.1 0.006 2.1E-07 46.2 1.2 20 62-81 27-48 (207)
418 1f5n_A Interferon-induced guan 95.1 0.0086 2.9E-07 54.3 2.4 36 62-100 40-77 (592)
419 2atx_A Small GTP binding prote 95.1 0.0062 2.1E-07 45.3 1.2 20 62-81 20-41 (194)
420 1gwn_A RHO-related GTP-binding 95.1 0.006 2.1E-07 46.6 1.2 20 62-81 30-51 (205)
421 3t5d_A Septin-7; GTP-binding p 95.1 0.0071 2.4E-07 48.5 1.7 20 62-81 10-31 (274)
422 3cnl_A YLQF, putative uncharac 95.1 0.0075 2.6E-07 48.8 1.8 35 62-97 101-137 (262)
423 3def_A T7I23.11 protein; chlor 95.1 0.0055 1.9E-07 48.9 0.9 20 62-81 38-59 (262)
424 1xzp_A Probable tRNA modificat 95.1 0.0026 9E-08 56.1 -1.1 49 62-111 245-297 (482)
425 1ypw_A Transitional endoplasmi 95.0 0.0075 2.6E-07 56.2 1.8 25 57-81 235-260 (806)
426 2chg_A Replication factor C sm 95.0 0.0084 2.9E-07 44.6 1.7 16 62-77 40-55 (226)
427 1v5w_A DMC1, meiotic recombina 95.0 0.011 3.8E-07 49.4 2.6 23 55-77 117-139 (343)
428 3kl4_A SRP54, signal recogniti 95.0 0.0076 2.6E-07 52.6 1.6 19 59-77 96-114 (433)
429 2zr9_A Protein RECA, recombina 95.0 0.0097 3.3E-07 50.1 2.2 23 55-77 56-78 (349)
430 3k1j_A LON protease, ATP-depen 94.9 0.0058 2E-07 54.8 0.8 21 61-81 61-82 (604)
431 3t15_A Ribulose bisphosphate c 94.9 0.0085 2.9E-07 48.8 1.7 22 60-81 36-58 (293)
432 1puj_A YLQF, conserved hypothe 94.9 0.011 3.8E-07 48.2 2.4 37 61-98 121-159 (282)
433 3syl_A Protein CBBX; photosynt 94.9 0.0087 3E-07 48.0 1.7 18 60-77 67-84 (309)
434 2orw_A Thymidine kinase; TMTK, 94.9 0.011 3.7E-07 45.2 2.1 22 60-81 3-26 (184)
435 2qag_A Septin-2, protein NEDD5 94.9 0.0075 2.6E-07 50.8 1.4 15 63-77 40-54 (361)
436 3llu_A RAS-related GTP-binding 94.9 0.009 3.1E-07 44.8 1.6 20 62-81 22-43 (196)
437 4a9a_A Ribosome-interacting GT 94.9 0.0029 9.8E-08 54.3 -1.4 50 62-113 74-127 (376)
438 2e87_A Hypothetical protein PH 94.9 0.012 4.1E-07 49.2 2.5 22 61-82 168-191 (357)
439 2gks_A Bifunctional SAT/APS ki 94.8 0.013 4.6E-07 52.2 2.9 22 60-81 372-394 (546)
440 3cpj_B GTP-binding protein YPT 94.8 0.0084 2.9E-07 46.0 1.4 20 62-81 15-36 (223)
441 3auy_A DNA double-strand break 94.8 0.011 3.6E-07 49.8 2.1 17 61-77 26-42 (371)
442 1d2n_A N-ethylmaleimide-sensit 94.8 0.0081 2.8E-07 47.7 1.3 23 59-81 63-86 (272)
443 3q3j_B RHO-related GTP-binding 94.8 0.0084 2.9E-07 45.9 1.3 20 62-81 29-50 (214)
444 1jwy_B Dynamin A GTPase domain 94.8 0.01 3.4E-07 48.0 1.8 20 62-81 26-47 (315)
445 2j0v_A RAC-like GTP-binding pr 94.8 0.0082 2.8E-07 45.3 1.2 20 62-81 11-32 (212)
446 2ga8_A Hypothetical 39.9 kDa p 94.8 0.0083 2.8E-07 51.3 1.3 20 62-81 26-46 (359)
447 2hup_A RAS-related protein RAB 94.8 0.0085 2.9E-07 45.3 1.2 20 62-81 31-52 (201)
448 3geh_A MNME, tRNA modification 94.8 0.0024 8.2E-08 56.0 -2.2 54 62-116 226-283 (462)
449 3co5_A Putative two-component 94.7 0.0094 3.2E-07 43.2 1.3 20 62-81 29-49 (143)
450 1ofh_A ATP-dependent HSL prote 94.7 0.0092 3.1E-07 47.5 1.3 17 61-77 51-67 (310)
451 1wxq_A GTP-binding protein; st 94.7 0.0086 2.9E-07 51.4 1.2 36 63-100 3-40 (397)
452 2v1u_A Cell division control p 94.7 0.0096 3.3E-07 48.6 1.4 23 60-82 44-68 (387)
453 4gzl_A RAS-related C3 botulinu 94.7 0.011 3.7E-07 44.8 1.6 19 62-80 32-52 (204)
454 2g3y_A GTP-binding protein GEM 94.6 0.012 4E-07 45.8 1.8 19 62-80 39-59 (211)
455 2zts_A Putative uncharacterize 94.6 0.014 4.8E-07 44.9 2.2 21 57-77 27-47 (251)
456 1j8m_F SRP54, signal recogniti 94.6 0.011 3.6E-07 48.8 1.5 18 60-77 98-115 (297)
457 1m8p_A Sulfate adenylyltransfe 94.6 0.011 3.8E-07 53.1 1.8 23 59-81 395-418 (573)
458 3hws_A ATP-dependent CLP prote 94.6 0.0093 3.2E-07 49.6 1.2 21 61-81 52-73 (363)
459 2gco_A H9, RHO-related GTP-bin 94.6 0.011 3.9E-07 44.4 1.6 19 62-80 27-47 (201)
460 3uk6_A RUVB-like 2; hexameric 94.6 0.013 4.4E-07 48.2 2.0 18 60-77 70-87 (368)
461 2qgz_A Helicase loader, putati 94.6 0.012 4.2E-07 48.4 1.8 18 60-77 152-169 (308)
462 3th5_A RAS-related C3 botulinu 93.6 0.0062 2.1E-07 45.8 0.0 20 62-81 32-53 (204)
463 2z43_A DNA repair and recombin 94.6 0.014 4.8E-07 48.2 2.2 23 55-77 102-124 (324)
464 1x6v_B Bifunctional 3'-phospho 94.5 0.011 3.9E-07 53.9 1.7 23 59-81 51-74 (630)
465 2z4s_A Chromosomal replication 94.5 0.0089 3E-07 51.7 0.9 22 60-81 130-152 (440)
466 3ice_A Transcription terminati 94.5 0.013 4.6E-07 51.0 2.0 23 59-81 173-196 (422)
467 2r62_A Cell division protease 94.5 0.0049 1.7E-07 48.7 -0.8 19 62-80 46-65 (268)
468 2qen_A Walker-type ATPase; unk 94.4 0.016 5.4E-07 46.7 2.2 21 61-81 32-54 (350)
469 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.014 4.7E-07 48.2 1.8 22 59-80 44-66 (322)
470 1h65_A Chloroplast outer envel 94.4 0.012 4.2E-07 46.9 1.4 20 62-81 41-62 (270)
471 1g8f_A Sulfate adenylyltransfe 94.4 0.012 4E-07 52.4 1.3 23 59-81 394-417 (511)
472 3a1s_A Iron(II) transport prot 94.3 0.014 4.6E-07 46.8 1.6 20 62-81 7-28 (258)
473 2ffh_A Protein (FFH); SRP54, s 94.3 0.013 4.6E-07 50.9 1.6 19 59-77 97-115 (425)
474 1lnz_A SPO0B-associated GTP-bi 94.3 0.018 6.1E-07 48.5 2.3 52 62-115 160-216 (342)
475 2qby_B CDC6 homolog 3, cell di 94.3 0.018 6.2E-07 47.3 2.3 22 60-81 45-68 (384)
476 2fna_A Conserved hypothetical 94.3 0.016 5.5E-07 46.7 1.8 21 61-81 31-53 (357)
477 4ag6_A VIRB4 ATPase, type IV s 94.2 0.014 5E-07 49.0 1.5 21 61-81 36-58 (392)
478 2i1q_A DNA repair and recombin 94.2 0.019 6.5E-07 47.0 2.2 23 55-77 93-115 (322)
479 3pfi_A Holliday junction ATP-d 94.2 0.019 6.4E-07 46.8 2.1 20 61-80 56-76 (338)
480 2aka_B Dynamin-1; fusion prote 94.2 0.013 4.6E-07 46.7 1.2 20 62-81 28-49 (299)
481 3dm5_A SRP54, signal recogniti 94.1 0.021 7.2E-07 50.0 2.5 23 59-81 99-123 (443)
482 2r6a_A DNAB helicase, replicat 94.1 0.021 7.2E-07 49.3 2.5 21 57-77 200-220 (454)
483 3fdi_A Uncharacterized protein 94.1 0.016 5.4E-07 44.8 1.5 21 61-81 7-28 (201)
484 3bh0_A DNAB-like replicative h 94.1 0.022 7.6E-07 46.9 2.5 21 57-77 65-85 (315)
485 3p32_A Probable GTPase RV1496/ 94.1 0.019 6.5E-07 48.0 2.0 22 60-81 79-102 (355)
486 3hjn_A DTMP kinase, thymidylat 94.1 0.012 4.1E-07 45.5 0.7 35 62-98 2-38 (197)
487 4dcu_A GTP-binding protein ENG 94.0 0.026 8.9E-07 48.7 2.8 54 60-114 195-252 (456)
488 3d8b_A Fidgetin-like protein 1 94.0 0.018 6.3E-07 48.0 1.8 23 59-81 116-139 (357)
489 3eie_A Vacuolar protein sortin 94.0 0.018 6.1E-07 47.2 1.7 22 60-81 51-73 (322)
490 2dhr_A FTSH; AAA+ protein, hex 94.0 0.021 7.3E-07 50.5 2.2 20 62-81 66-86 (499)
491 2ce7_A Cell division protein F 94.0 0.019 6.5E-07 50.6 1.9 22 60-81 49-71 (476)
492 1um8_A ATP-dependent CLP prote 94.0 0.015 5.1E-07 48.5 1.2 20 62-81 74-94 (376)
493 3i8s_A Ferrous iron transport 94.0 0.017 5.8E-07 46.5 1.4 20 62-81 5-26 (274)
494 4dkx_A RAS-related protein RAB 93.9 0.017 5.7E-07 45.2 1.3 19 63-81 16-36 (216)
495 2v3c_C SRP54, signal recogniti 93.8 0.019 6.4E-07 49.9 1.5 22 60-81 99-122 (432)
496 2bjv_A PSP operon transcriptio 93.8 0.02 6.8E-07 45.2 1.4 17 61-77 30-46 (265)
497 1sxj_D Activator 1 41 kDa subu 93.7 0.018 6.2E-07 46.7 1.2 15 63-77 61-75 (353)
498 1hqc_A RUVB; extended AAA-ATPa 93.7 0.017 5.8E-07 46.5 1.0 17 61-77 39-55 (324)
499 1z6t_A APAF-1, apoptotic prote 93.7 0.028 9.5E-07 49.3 2.4 19 59-77 146-164 (591)
500 2axn_A 6-phosphofructo-2-kinas 93.7 0.023 7.8E-07 50.4 1.8 19 59-77 34-52 (520)
No 1
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.96 E-value=8.8e-31 Score=206.90 Aligned_cols=105 Identities=33% Similarity=0.537 Sum_probs=99.0
Q ss_pred cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCCC
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~ 138 (166)
|+|+|+||||||||||+ |++.+|+.|..+++||||+||+||++|++|+|+|.++|++++++|.|+||+++.||+||++
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~ 81 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence 57999999999999999 8899998899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088 139 QCGRQNGRN-----YLIFNTLAAKCLPTVFPF 165 (166)
Q Consensus 139 ~~~I~~ile-----~v~L~~~~~~~l~~~~p~ 165 (166)
+++++++++ +++++.++++.++..+|+
T Consensus 82 ~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~ 113 (186)
T 1ex7_A 82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPEL 113 (186)
T ss_dssp HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGG
T ss_pred cceeeehhhCCCEEEecCCHHHHHHHHHhccc
Confidence 999999987 577889999999887764
No 2
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.93 E-value=3.5e-26 Score=182.17 Aligned_cols=107 Identities=27% Similarity=0.397 Sum_probs=99.1
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 136 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG 136 (166)
.+++++|+||||||||||+ |+..+++.|...+++|||+|++||++|++|+|++.++|.+++.++.|+||+++.+|+||
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~YG 97 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFG 97 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhceecc
Confidence 4669999999999999999 66677767999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088 137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFPF 165 (166)
Q Consensus 137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p~ 165 (166)
++++.++++++ +++++.++++.++..+|.
T Consensus 98 t~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~ 131 (197)
T 3ney_A 98 TKFETVHQIHKQNKIAILDIEPQTLKIVRTAELS 131 (197)
T ss_dssp EEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTC
T ss_pred cchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCC
Confidence 99999999998 578889999999888775
No 3
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=99.92 E-value=3.1e-26 Score=192.17 Aligned_cols=133 Identities=29% Similarity=0.411 Sum_probs=108.7
Q ss_pred hhHHHHHHhcCceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCC
Q psy18088 19 TKQSYIRENAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRG 96 (166)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~ 96 (166)
|++...+++......+.++|+.|.... ..++|+|+|+||+ |+||. |+..+|+.|+.+|+||||+
T Consensus 70 e~~~~~~~~~~~~~~~~~~YE~V~~~~-----------~~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~ 135 (292)
T 3tvt_A 70 ERKMRARDRSVKSEENVLSYEAVQRLS-----------INYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRP 135 (292)
T ss_dssp HHHHHC----------CCCEEEEEEEE-----------CSSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSC
T ss_pred HHHHHHhhccccccccccchheEEecc-----------CCCCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccC
Confidence 444444445555666788999987651 2356799999995 99999 9999999999999999999
Q ss_pred CCCCccCCcceeec-CHHHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088 97 PRPGEVDGKAYHFV-TRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPTVFPF 165 (166)
Q Consensus 97 p~~ge~~G~~y~fv-s~~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~~~p~ 165 (166)
||+||++|++|+|+ ++++|+.+++++.|+||+++.||+|||+.++|+++++ +++++.++++.|+..+|+
T Consensus 136 pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~ 210 (292)
T 3tvt_A 136 KREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLY 210 (292)
T ss_dssp CCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCC
T ss_pred CcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhccccccc
Confidence 99999999999999 8899999999999999999999999999999999998 678889999988766554
No 4
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=99.90 E-value=1.6e-24 Score=181.56 Aligned_cols=120 Identities=33% Similarity=0.495 Sum_probs=104.3
Q ss_pred eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCccee
Q psy18088 31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYH 108 (166)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~ 108 (166)
.....++|++|.+.. ..++++|+|+|| ||+||+ |++.+|+.|..+++||||+||+||++|++|+
T Consensus 87 ~~~~~~~Ye~V~~~~-----------~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~ 152 (295)
T 1kjw_A 87 REDSVLSYETVTQME-----------VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYH 152 (295)
T ss_dssp CCCCCCCEEEEEEEE-----------CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBE
T ss_pred ccCCCCCcceeeeec-----------CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeE
Confidence 444567888886651 234679999999 699999 8888888899999999999999999999999
Q ss_pred ec-CHHHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCC--ccCC
Q psy18088 109 FV-TRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLP--TVFP 164 (166)
Q Consensus 109 fv-s~~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~--~~~p 164 (166)
|+ |.++|++++++|.|+||+++.||+|||++++|+++++ +++++.++++.++ .++|
T Consensus 153 Fv~s~eef~~~i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~p 216 (295)
T 1kjw_A 153 FVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHP 216 (295)
T ss_dssp ECSCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCC
T ss_pred ecCCHHHHHHHHHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCC
Confidence 99 9999999999999999999999999999999999998 5677888887773 4555
No 5
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.86 E-value=3.4e-22 Score=184.34 Aligned_cols=122 Identities=32% Similarity=0.482 Sum_probs=107.1
Q ss_pred ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcce
Q psy18088 30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAY 107 (166)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y 107 (166)
+.....++|++|... +..++|+|+|+||| |+||+ |+..+|+.|..+++||||+||+||++|++|
T Consensus 512 ~~~~~~~~Ye~V~~~-----------~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY 577 (721)
T 2xkx_A 512 GREDSVLSYETVTQM-----------EVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDY 577 (721)
T ss_pred cccccCCCceeeecc-----------cCCCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCcee
Confidence 455567789998765 12346799999996 99999 999998889999999999999999999999
Q ss_pred eec-CHHHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCC--ccCCC
Q psy18088 108 HFV-TRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLP--TVFPF 165 (166)
Q Consensus 108 ~fv-s~~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~--~~~p~ 165 (166)
+|+ |+++|+++++++.|+||+++.||+|||++++|+++++ +++++.++++.|+ .+||+
T Consensus 578 ~Fv~s~~~f~~~i~~~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~ 643 (721)
T 2xkx_A 578 HFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPI 643 (721)
T ss_pred EEecCHHHHHHHHhcCCceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCE
Confidence 999 9999999999999999999999999999999999998 5778888888776 66663
No 6
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.86 E-value=4.1e-22 Score=153.80 Aligned_cols=106 Identities=26% Similarity=0.382 Sum_probs=90.8
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 136 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG 136 (166)
++++++|+||||||||||+ |...++..+...+++|||+|+.|+++|++|+|++.++|..+++++.|++|+++.+|+||
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~yg 83 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYG 83 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcccc
Confidence 4669999999999999999 55555545888999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088 137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFP 164 (166)
Q Consensus 137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p 164 (166)
++.+.++++++ +++++.+++..++..+|
T Consensus 84 ~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~ 116 (180)
T 1kgd_A 84 TKLETIRKIHEQGLIAILDVEPQALKVLRTAEF 116 (180)
T ss_dssp EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTT
T ss_pred ccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCC
Confidence 99998998887 56778888888877654
No 7
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.84 E-value=1.8e-21 Score=153.54 Aligned_cols=105 Identities=30% Similarity=0.402 Sum_probs=92.8
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCC
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~ 137 (166)
+++++|+||||||||||+ |...++..+...+++|||+|+.||.+|++|+|++.+.|..++.++.|++|+++.+|+||+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg~ 87 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGT 87 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCCC
Confidence 559999999999999999 666666559999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088 138 SQCGRQNGRN-----YLIFNTLAAKCLPTVFP 164 (166)
Q Consensus 138 ~~~~I~~ile-----~v~L~~~~~~~l~~~~p 164 (166)
+.+.++++++ +++++.++...++..+|
T Consensus 88 ~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~ 119 (208)
T 3tau_A 88 PLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMP 119 (208)
T ss_dssp EHHHHHHHHHTTCCEEEECCHHHHHHHHHHCT
T ss_pred cHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCC
Confidence 9999998887 45666777776666555
No 8
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.82 E-value=5.6e-21 Score=147.88 Aligned_cols=102 Identities=34% Similarity=0.541 Sum_probs=90.9
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCC
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~ 137 (166)
+++++|+||||||||||+ |...++..++..+++|||+|++|+++|.+|+|++.+.|..++.++.|++|+++.+|.||+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 357999999999999999 555667679999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHh-----hccCChhHHhhCCc
Q psy18088 138 SQCGRQNGRN-----YLIFNTLAAKCLPT 161 (166)
Q Consensus 138 ~~~~I~~ile-----~v~L~~~~~~~l~~ 161 (166)
+.+.++++++ +++++.++.+.++.
T Consensus 81 ~~~~i~~~l~~g~~~il~~~~~g~~~l~~ 109 (186)
T 3a00_A 81 TVASVKQVSKSGKTCILDIDMQGVKSVKA 109 (186)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHT
T ss_pred cHHHHHHHHHcCCeEEEEEcHHHHHHHHH
Confidence 9988998887 36667777777665
No 9
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.81 E-value=2.2e-20 Score=146.23 Aligned_cols=106 Identities=29% Similarity=0.432 Sum_probs=90.5
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 136 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG 136 (166)
.+++|+|+||||||||||. |...++..+...+++|||+|+.|+++|.+|+|++.++|..++.++.|+++.++.+|.||
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYG 90 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeec
Confidence 3568999999999999999 66666644888999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088 137 TSQCGRQNGRN-----YLIFNTLAAKCLPTVFP 164 (166)
Q Consensus 137 ~~~~~I~~ile-----~v~L~~~~~~~l~~~~p 164 (166)
++.+.++++++ +++...++...++..+|
T Consensus 91 ~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~ 123 (204)
T 2qor_A 91 TLKSEYDLAVGEGKICLFEMNINGVKQLKESKH 123 (204)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcC
Confidence 99988888876 34455667766655443
No 10
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.78 E-value=8.7e-20 Score=143.15 Aligned_cols=101 Identities=45% Similarity=0.623 Sum_probs=86.0
Q ss_pred CCcEEEEEcCCCCChhhhc-cc-cccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcC
Q psy18088 59 FFACILHVDFAMFGKTSFL-FL-RTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYG 136 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li-~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG 136 (166)
++++++|+||||||||||+ ++ ..++..++..+++|||+|+.|+++|.+|+|++.++|..++.++.|++++++.+|.||
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g 82 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG 82 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence 3568999999999999999 44 556667999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHh-----hccCChhHHhhC
Q psy18088 137 TSQCGRQNGRN-----YLIFNTLAAKCL 159 (166)
Q Consensus 137 ~~~~~I~~ile-----~v~L~~~~~~~l 159 (166)
++.++++++++ .+++++++...+
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~ 110 (198)
T 1lvg_A 83 TSKEAVRAVQAMNRICVLDVDLQGVRSI 110 (198)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHH
T ss_pred CCHHHHHHHHHcCCcEEEECCHHHHHHH
Confidence 99888888886 234555555544
No 11
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.77 E-value=2.1e-19 Score=144.19 Aligned_cols=106 Identities=36% Similarity=0.473 Sum_probs=91.5
Q ss_pred CCcEEEEEcCCCCChhhhc--ccccccc-ceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhc
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLD-RFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLY 135 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~-~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~y 135 (166)
.|++++|+||||||||||+ |....+. .+...+++|||+|++++.+|++|+|++...|..+...+.|+||.++.+++|
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y 94 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY 94 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence 3559999999999999999 4444542 477799999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088 136 GTSQCGRQNGRN-----YLIFNTLAAKCLPTVFP 164 (166)
Q Consensus 136 G~~~~~I~~ile-----~v~L~~~~~~~l~~~~p 164 (166)
|++.+.++++++ +++|++++.+.+++.++
T Consensus 95 g~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~ 128 (219)
T 1s96_A 95 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMP 128 (219)
T ss_dssp EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHcc
Confidence 999888888887 57888888887766554
No 12
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.70 E-value=6.4e-18 Score=134.34 Aligned_cols=116 Identities=28% Similarity=0.336 Sum_probs=84.6
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-c-c-cccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHH
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-F-L-RTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEER 118 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-L-i-~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~ 118 (166)
.+.+++.|+.+++|+ +++|+||||||||||+ + . ..++ .+...++++||+|+.|+++|.+|+|++...|..+
T Consensus 14 ~~~~~~~sl~v~~G~-----ii~l~Gp~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~ 87 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGV-----ILVLSSPSGCGKTTVANKLLEKQKN-NIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRL 87 (231)
T ss_dssp --------CCEECCC-----EEEEECSCC----CHHHHHHC-----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred hcccCCCCcccCCCC-----EEEEECCCCCCHHHHHHHHHhcCCC-CcccccccCCCCCCccccCCCeEEEecHHHhhhh
Confidence 567778899998877 8999999999999999 4 4 4455 4788899999999999999999999999999999
Q ss_pred HHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCCccC
Q psy18088 119 IAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPTVF 163 (166)
Q Consensus 119 ~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~~~ 163 (166)
...+.++++.++.++.||++.+.++++++ +++++.++...++..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~ 137 (231)
T 3lnc_A 88 CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMM 137 (231)
T ss_dssp HHTTCEEEEEEETTEEEEEECTTHHHHHHHTCEEEEECCHHHHHHHHHHS
T ss_pred hhcCceehhhhhccccCCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhc
Confidence 99999999999999999998877877776 2455555555544433
No 13
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.65 E-value=1.1e-16 Score=127.26 Aligned_cols=114 Identities=26% Similarity=0.371 Sum_probs=83.5
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc-cccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHH
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT-VLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIA 120 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~-~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~ 120 (166)
..+.++++.+.+|+ +++|+||||||||||+ ++.+ +|+.+...+++|||+++.++.++++|.|++...|..+..
T Consensus 11 ~~l~~isl~i~~G~-----~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 11 SSGLVPRGSMNNIY-----PLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp -----------CCC-----CEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred ccccCCceecCCCC-----EEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 34567888888777 7999999999999999 5544 453344477889999888888999999999999999988
Q ss_pred cCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCCc
Q psy18088 121 AGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPT 161 (166)
Q Consensus 121 ~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~ 161 (166)
++.+++++++.+|.||.+.+.++++++ +++++..+.+..+.
T Consensus 86 ~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~ 131 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKK 131 (218)
T ss_dssp TTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTT
T ss_pred ccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHH
Confidence 899999999999999998888888877 23445556555543
No 14
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.58 E-value=1.2e-15 Score=117.77 Aligned_cols=103 Identities=28% Similarity=0.406 Sum_probs=84.8
Q ss_pred CcEEEEEcCCCCChhhhc-ccc-ccccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhcCC
Q psy18088 60 FACILHVDFAMFGKTSFL-FLR-TVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~-~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~ 137 (166)
|.+++|+||||||||||+ ++. .+| .+......+||+++.++.+|.+|+|.+...|..+...+.|+++..+.++.||+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA-EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS-SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC-CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence 458999999999999999 544 455 57777788999998888899999999999999999999999999999999999
Q ss_pred ChHHHHHHHh-----hccCChhHHhhCCccC
Q psy18088 138 SQCGRQNGRN-----YLIFNTLAAKCLPTVF 163 (166)
Q Consensus 138 ~~~~I~~ile-----~v~L~~~~~~~l~~~~ 163 (166)
+.+.++++++ ++++..++...++..+
T Consensus 86 ~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~ 116 (205)
T 3tr0_A 86 EKDWVLRQLKAGRDVLLEIDWQGARQIRELF 116 (205)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHHHC
T ss_pred hHHHHHHHHHcCCeEEEEECHHHHHHHHHhC
Confidence 9888888877 3455555655544433
No 15
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.50 E-value=1.6e-14 Score=111.32 Aligned_cols=88 Identities=32% Similarity=0.381 Sum_probs=74.5
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc-c-ccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehhhhc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT-V-LDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLY 135 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~-~-~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~gn~y 135 (166)
.+.+++|+||||||||||+ ++.+ + | ..+..+.+++|.|..++.++.+|.|.+...|..+..++.++++..+.+|.|
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPST-SYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTC-CEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCC-CeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence 3458999999999999999 5544 4 4 355567889999888888889999999999999999999999999999999
Q ss_pred CCChHHHHHHHh
Q psy18088 136 GTSQCGRQNGRN 147 (166)
Q Consensus 136 G~~~~~I~~ile 147 (166)
|.+.+.++++++
T Consensus 84 g~~~~~i~~~l~ 95 (207)
T 2j41_A 84 GTPVQYVKDTMD 95 (207)
T ss_dssp EEEHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 998888887765
No 16
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.50 E-value=2.3e-14 Score=112.28 Aligned_cols=105 Identities=31% Similarity=0.495 Sum_probs=79.5
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc-cccceeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCccceeeehh--hh
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT-VLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAA--NL 134 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~-~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~fle~~~~~g--n~ 134 (166)
.|++++|+||||||||||+ ++.+ .+. +...+.+++|+|+.++..+++|.|.+...|..+...+.+++|.++.+ +.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~~-i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~ 97 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHR 97 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhh
Confidence 3448999999999999999 5554 443 33456788998888888899999999999999888889999998888 67
Q ss_pred cCCChHHHHHHHhh-----ccCChhHHhhCCccCC
Q psy18088 135 YGTSQCGRQNGRNY-----LIFNTLAAKCLPTVFP 164 (166)
Q Consensus 135 yG~~~~~I~~ile~-----v~L~~~~~~~l~~~~p 164 (166)
||.+.+++++.++. ++++..+++.+++.+|
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 132 (207)
T 1znw_A 98 SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP 132 (207)
T ss_dssp EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT
T ss_pred cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC
Confidence 89887776665542 2355555555544444
No 17
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.31 E-value=8.8e-13 Score=114.16 Aligned_cols=91 Identities=11% Similarity=0.021 Sum_probs=65.1
Q ss_pred CceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcc
Q psy18088 29 GITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKA 106 (166)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~ 106 (166)
.++..+.++||+|.+.. + .++++|+|+|||| +||. |+..+|+.|.. |||+||+||++|++
T Consensus 212 ~~~~~~~~~YE~V~~~~--~---------~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~----~tr~pR~gE~dG~~ 273 (391)
T 3tsz_A 212 QPVQTKFPAYERVVLRE--A---------GFLRPVTIFGPIA---DVAREKLAREEPDIYQI----AKSEPRDAGTDQRS 273 (391)
T ss_dssp -----CCCSEEEEEEEE--C---------SSCCCEEEESTTH---HHHHHHHHHHCTTTEEE----CCCCCCCSSSCCC-
T ss_pred ccccccCCCcceEECcC--C---------CCCCEEEEECCCH---HHHHHHHHhhCcccccc----ccCCCCCcccCCcc
Confidence 34556678899998751 2 2467999999998 8999 99999987764 78999999999999
Q ss_pred eeecCHHHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088 107 YHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPTVFP 164 (166)
Q Consensus 107 y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~~~p 164 (166)
|+|+ +.++|+++++ +|+++.++++.|+..++
T Consensus 274 Y~Fv---------------------------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~ 309 (391)
T 3tsz_A 274 SGII---------------------------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQW 309 (391)
T ss_dssp -CCC---------------------------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTC
T ss_pred CCcC---------------------------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCC
Confidence 9998 5566666666 56667777777654433
No 18
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.29 E-value=5.5e-13 Score=118.05 Aligned_cols=93 Identities=12% Similarity=0.002 Sum_probs=59.7
Q ss_pred hcCceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCC
Q psy18088 27 NAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDG 104 (166)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G 104 (166)
++.++..+.++||+|.+. .+ .++++|+|+||||+| |. |+..+|+.|.. +||| ||+||++|
T Consensus 202 ~~~~~~~~~~~YEeV~~~--~~---------~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s---~~TR-pR~gE~dG 263 (468)
T 3shw_A 202 SAQPVQTKFPAYERVVLR--EA---------GFLRPVTIFGPIADV---AREKLAREEPDIYQI---AKSE-PRDAGTDQ 263 (468)
T ss_dssp -----CCCCCSEEEEEEE--CC---------SSCCCEEEESTTHHH---HHHHHHHHCTTTEEE---CCCB-C-------
T ss_pred ccccccccCCCcceeEcc--cC---------CCCCEEEEECCCHHH---HHHHHHHhCCCceee---ecCC-CCCccccc
Confidence 344556667899999875 22 356799999999999 77 99999988876 4699 99999999
Q ss_pred cceeecCHHHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCCccCC
Q psy18088 105 KAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPTVFP 164 (166)
Q Consensus 105 ~~y~fvs~~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~~~p 164 (166)
++|+| |++++|+++++ +|+++.++++.|+...+
T Consensus 264 ~~Y~F---------------------------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~ 301 (468)
T 3shw_A 264 RSSGI---------------------------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQW 301 (468)
T ss_dssp ---CB---------------------------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTC
T ss_pred ccCCc---------------------------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCC
Confidence 99998 67777777777 56777888777754433
No 19
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.19 E-value=1.4e-12 Score=112.03 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=74.2
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++|+.|++|| +++|+||||||||||+ +|.++.. |.+|++ +|.
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge-----~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G~ 66 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGE-----ILFIIGASGCGKTTLLRCLAGFEQ------------PDSGEISLSGK 66 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEEESTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCC-----EEEEECCCCchHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence 577889998885 667889999999888 8999999999999999 8888654 666653 555
Q ss_pred cee----ecCH--HHHHHHHHcCCccceeeehhh-hcCC-----Ch----HHHHHHHhhccCCh
Q psy18088 106 AYH----FVTR--ADMEERIAAGEFLEHAEFAAN-LYGT-----SQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~----fvs~--~~f~~~~~~~~fle~~~~~gn-~yG~-----~~----~~I~~ile~v~L~~ 153 (166)
+.. .... ..+...+|...+.++.++.+| .||. +. +.++++++.++|.+
T Consensus 67 ~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~ 130 (359)
T 3fvq_A 67 TIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE 130 (359)
T ss_dssp EEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG
T ss_pred ECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch
Confidence 431 1111 112233455667778888887 4543 22 34667777777764
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.17 E-value=1.2e-11 Score=106.51 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=79.5
Q ss_pred CceEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc
Q psy18088 29 GITVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV 102 (166)
Q Consensus 29 ~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~ 102 (166)
.+++++++++.+. ..++.++|+.|++|+ +++|+||||||||||+ ++.++.. |..|++
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Ge-----i~~IiGpnGaGKSTLlr~i~GL~~------------p~~G~I 85 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQ-----IYGVIGASGAGKSTLIRCVNLLER------------PTEGSV 85 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHHTSSC------------CSEEEE
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCC-----EEEEEcCCCchHHHHHHHHhcCCC------------CCceEE
Confidence 3788999998884 457889999999888 8999999999999999 8888765 778874
Q ss_pred --CCcceeecCHHHHHH-------HHHcCCccceeeehhh------hcCCChH----HHHHHHhhccCCh
Q psy18088 103 --DGKAYHFVTRADMEE-------RIAAGEFLEHAEFAAN------LYGTSQC----GRQNGRNYLIFNT 153 (166)
Q Consensus 103 --~G~~y~fvs~~~f~~-------~~~~~~fle~~~~~gn------~yG~~~~----~I~~ile~v~L~~ 153 (166)
+|.+....+..+... .+|...++++.++.+| .+|.+.+ .++++++.++|.+
T Consensus 86 ~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~ 155 (366)
T 3tui_C 86 LVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD 155 (366)
T ss_dssp EETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred EECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence 888765556554432 2455566777777777 2455543 3566677777764
No 21
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.17 E-value=1e-11 Score=102.12 Aligned_cols=107 Identities=17% Similarity=0.107 Sum_probs=74.6
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
++++++++|.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.++-. |..|++ +|.
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge-----~~~liG~nGsGKSTLl~~l~Gl~~------------p~~G~I~~~g~ 73 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGE-----MVAIIGPNGAGKSTLLRLLTGYLS------------PSHGECHLLGQ 73 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEECCTTSCHHHHHHHHTSSSC------------CSSCEEEETTE
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence 678889998885 567888999999888 8999999999999999 8877654 778874 777
Q ss_pred ceeecCHHHHHHH----HHcCCccceeeehhh-hcCC-----C--hHHHHHHHhhccCCh
Q psy18088 106 AYHFVTRADMEER----IAAGEFLEHAEFAAN-LYGT-----S--QCGRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~fvs~~~f~~~----~~~~~fle~~~~~gn-~yG~-----~--~~~I~~ile~v~L~~ 153 (166)
+....+..++.+. .|...+....++.+| .+|. . .+.++++++.+++.+
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~ 133 (266)
T 4g1u_C 74 NLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA 133 (266)
T ss_dssp ETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST
T ss_pred ECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh
Confidence 6544444444332 233444455666666 2331 1 345677777777754
No 22
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.15 E-value=1.3e-12 Score=113.08 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=74.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
.++++++++.+. ..++.++|+.|++|| +++|+||||||||||+ +|.++.. |.+|++ +|.
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge-----~~~llGpsGsGKSTLLr~iaGl~~------------p~~G~I~i~G~ 65 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGE-----FVVFVGPSGCGKSTLLRMIAGLET------------ITSGDLFIGEK 65 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCC-----EEEEEcCCCchHHHHHHHHHcCCC------------CCCeEEEECCE
Confidence 467788888885 667889999999888 8999999999999999 8888665 666763 665
Q ss_pred ceeecCHHH--HHHHHHcCCccceeeehhh-h-----cCCChH----HHHHHHhhccCCh
Q psy18088 106 AYHFVTRAD--MEERIAAGEFLEHAEFAAN-L-----YGTSQC----GRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~fvs~~~--f~~~~~~~~fle~~~~~gn-~-----yG~~~~----~I~~ile~v~L~~ 153 (166)
+....+..+ +...+|...+.++.++.+| . +|.+.+ .++++++.++|.+
T Consensus 66 ~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 125 (381)
T 3rlf_A 66 RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH 125 (381)
T ss_dssp ECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG
T ss_pred ECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence 543333221 2223455667777788777 2 345543 4566777777764
No 23
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.13 E-value=1.1e-11 Score=104.27 Aligned_cols=106 Identities=17% Similarity=0.175 Sum_probs=77.7
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--cCC
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--VDG 104 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~~G 104 (166)
.+++++|++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.++.. |..|+ ++|
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge-----~vaivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~G 115 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQ-----TLALVGPSGAGKSTILRLLFRFYD------------ISSGCIRIDG 115 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTC-----EEEEESSSCHHHHHHHHHHTTSSC------------CSEEEEEETT
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCC-----EEEEECCCCchHHHHHHHHHcCCC------------CCCcEEEECC
Confidence 477888888773 557888999998888 8999999999999999 8888765 88887 488
Q ss_pred cceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCC
Q psy18088 105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFN 152 (166)
Q Consensus 105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~ 152 (166)
.+...++...+.+. +.|..++...++.+| .||.. .+.++++++.+.+.
T Consensus 116 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 116 QDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp EETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred EEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 87665666655542 233445556788888 56653 45677777766654
No 24
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.10 E-value=2.6e-11 Score=118.16 Aligned_cols=106 Identities=15% Similarity=0.222 Sum_probs=86.5
Q ss_pred ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
-.++++|++.+. .+++.++|+.|++|+ .++|+||||||||||+ |+.++.+ |.+|+ +
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge-----~vaIVG~SGsGKSTL~~lL~rl~~------------p~~G~I~i 1138 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQ-----TLALVGPSGCGKSTVVALLERFYD------------TLGGEIFI 1138 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTC-----EEEEECSTTSSTTSHHHHHTTSSC------------CSSSEEEE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCC-----EEEEECCCCChHHHHHHHHhcCcc------------CCCCEEEE
Confidence 577888887762 357889999999888 8999999999999999 8888877 88997 5
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC-----ChHHHHHHHhhccCC
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT-----SQCGRQNGRNYLIFN 152 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~-----~~~~I~~ile~v~L~ 152 (166)
||+|..-++...++.. +.|+.++..+++.+| .||. +.+++.++++.+.+.
T Consensus 1139 DG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~ 1197 (1321)
T 4f4c_A 1139 DGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIH 1197 (1321)
T ss_dssp TTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCH
T ss_pred CCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCCh
Confidence 9999877888877764 577889999999999 6885 346777777766654
No 25
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.10 E-value=6.4e-12 Score=108.23 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=67.7
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ +|.++.. |.+|++ +|.
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~ 73 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGE-----FLVLLGPSGCGKTTTLRMIAGLEE------------PTEGRIYFGDR 73 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCC-----EEEEECCCCChHHHHHHHHHcCCC------------CCceEEEECCE
Confidence 477888888884 457788899998888 8999999999999999 8888654 556653 554
Q ss_pred ceeecCHH--HHHHHHHcCCccceeeehhh-hcC-----CCh----HHHHHHHhhccCChh
Q psy18088 106 AYHFVTRA--DMEERIAAGEFLEHAEFAAN-LYG-----TSQ----CGRQNGRNYLIFNTL 154 (166)
Q Consensus 106 ~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~yG-----~~~----~~I~~ile~v~L~~~ 154 (166)
+....+.. .+...+|...+.++.++.+| .|| .+. +.++++++.++|.+.
T Consensus 74 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~ 134 (372)
T 1v43_A 74 DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL 134 (372)
T ss_dssp ECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG
T ss_pred ECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH
Confidence 43211111 11112344445666677777 344 333 246677777877643
No 26
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.10 E-value=4.7e-12 Score=108.60 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=72.4
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ +|.++.. |..|++ +|.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~ 65 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGE-----FVALLGPSGCGKTTTLLMLAGIYK------------PTSGEIYFDDV 65 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCC-----EEEEEcCCCchHHHHHHHHHCCCC------------CCccEEEECCE
Confidence 467778888774 457788899999888 8999999999999999 8888654 666653 565
Q ss_pred ceeecCHH--HHHHHHHcCCccceeeehhh-hcCC-----Ch----HHHHHHHhhccCCh
Q psy18088 106 AYHFVTRA--DMEERIAAGEFLEHAEFAAN-LYGT-----SQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~yG~-----~~----~~I~~ile~v~L~~ 153 (166)
+....+.. .+...+|...+.++.++.+| .||. +. +.++++++.++|.+
T Consensus 66 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 125 (359)
T 2yyz_A 66 LVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN 125 (359)
T ss_dssp ECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG
T ss_pred ECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence 43222211 12223455556677777777 3442 22 35677888888764
No 27
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.10 E-value=3.5e-11 Score=96.22 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=71.0
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.++.. |..|++ +|.
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge-----~~~iiG~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~ 66 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGE-----FVSIIGASGSGKSTLLYILGLLDA------------PTEGKVFLEGK 66 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEEECTTSCHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEECCE
Confidence 467778887774 457788999999888 8999999999999999 7777654 777764 776
Q ss_pred ceeecCHHHH---H-H----HHHcCCccceeeehhhh------cCCCh----HHHHHHHhhccCCh
Q psy18088 106 AYHFVTRADM---E-E----RIAAGEFLEHAEFAANL------YGTSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~fvs~~~f---~-~----~~~~~~fle~~~~~gn~------yG~~~----~~I~~ile~v~L~~ 153 (166)
+....+..+. . . ..|...+.++.++.+|. ++.+. +.++++++.++|.+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 132 (224)
T 2pcj_A 67 EVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD 132 (224)
T ss_dssp ECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT
T ss_pred ECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence 6543343222 1 1 13444555666666661 34332 34566677777653
No 28
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.09 E-value=4.8e-11 Score=96.14 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=72.1
Q ss_pred eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088 31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV-- 102 (166)
Q Consensus 31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~-- 102 (166)
++++++++.+. ..++.++|+.+.+|+ +++|+||||||||||+ ++.++-. |..|++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge-----~~~iiG~nGsGKSTLl~~l~Gl~~------------p~~G~I~~ 64 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGE-----FVSIMGPSGSGKSTMLNIIGCLDK------------PTEGEVYI 64 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEE
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCCC------------CCceEEEE
Confidence 45677887774 357888999999888 8999999999999999 8887664 778874
Q ss_pred CCcceeecCHHHHHH--------HHHcCCccceeeehhhh-c--------CCCh----HHHHHHHhhccCCh
Q psy18088 103 DGKAYHFVTRADMEE--------RIAAGEFLEHAEFAANL-Y--------GTSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~--------~~~~~~fle~~~~~gn~-y--------G~~~----~~I~~ile~v~L~~ 153 (166)
+|.+....+..+... ++|...+.++.++.+|. + +.+. +.+.++++.+++.+
T Consensus 65 ~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 136 (235)
T 3tif_A 65 DNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136 (235)
T ss_dssp TTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCG
T ss_pred CCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCCh
Confidence 777654445443321 24555666666777762 2 2333 23455666777654
No 29
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.07 E-value=4e-11 Score=97.74 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=49.1
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.+.-. |..|++ +|.
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~liG~nGsGKSTLlk~l~Gl~~------------p~~G~i~~~g~ 69 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGD-----VTLIIGPNGSGKSTLINVITGFLK------------ADEGRVYFENK 69 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCE
Confidence 577888888874 457889999999888 8999999999999999 7777654 667763 665
Q ss_pred ce
Q psy18088 106 AY 107 (166)
Q Consensus 106 ~y 107 (166)
+.
T Consensus 70 ~~ 71 (257)
T 1g6h_A 70 DI 71 (257)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 30
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.06 E-value=1.1e-10 Score=104.95 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=77.2
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV-- 102 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~-- 102 (166)
+..+++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.++.. |.+|++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~-----~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~ 402 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGK-----TVALVGRSGSGKSTIANLFTRFYD------------VDSGSICL 402 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCCEEEE
Confidence 4678889988874 458899999999888 8999999999999999 8887765 888874
Q ss_pred CCcceeecCHHHHHH----HHHcCCccceeeehhh-hcCC----ChHHHHHHHhhccCCh
Q psy18088 103 DGKAYHFVTRADMEE----RIAAGEFLEHAEFAAN-LYGT----SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn-~yG~----~~~~I~~ile~v~L~~ 153 (166)
+|++....+..++.+ ..|. ..+...++.+| .+|. +.+.++++++.+++.+
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~ 461 (582)
T 3b5x_A 403 DGHDVRDYKLTNLRRHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAME 461 (582)
T ss_pred CCEEhhhCCHHHHhcCeEEEcCC-CccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHH
Confidence 887754444444433 2333 33444688888 4553 3466777887777654
No 31
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.05 E-value=5.5e-12 Score=108.06 Aligned_cols=107 Identities=13% Similarity=0.138 Sum_probs=71.4
Q ss_pred ceEEeeeccee-e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088 30 ITVRILLNYRT-C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG 104 (166)
Q Consensus 30 ~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G 104 (166)
+++++++++.+ . ..++.++|+.+++|+ +++|+||||||||||+ +|.++.. |.+|++ +|
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g 76 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGVSFQIREGE-----MVGLLGPSGSGKTTILRLIAGLER------------PTKGDVWIGG 76 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETT
T ss_pred eEEEEEEEEEEcCCCEEEeeeEEEECCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCccEEEECC
Confidence 67788888887 4 457788899999888 8999999999999999 8887654 666653 55
Q ss_pred cceeecCHH--HHHHHHHcCCccceeeehhh-hc-----CCCh----HHHHHHHhhccCCh
Q psy18088 105 KAYHFVTRA--DMEERIAAGEFLEHAEFAAN-LY-----GTSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 105 ~~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~y-----G~~~----~~I~~ile~v~L~~ 153 (166)
.+....+.. .+...+|...+.++.++.+| .| +.+. +.++++++.++|.+
T Consensus 77 ~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~ 137 (355)
T 1z47_A 77 KRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES 137 (355)
T ss_dssp EECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG
T ss_pred EECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 443211111 11223344556667777777 23 4443 34566777787764
No 32
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.05 E-value=7.4e-12 Score=107.02 Aligned_cols=107 Identities=15% Similarity=0.078 Sum_probs=70.3
Q ss_pred ceEEeeecceee-ec--CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 30 ITVRILLNYRTC-IS--ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~--~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
+++++++++.+. .. ++.++|+.+++|+ +++|+||||||||||+ +|.++.. |.+|++ +
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~ 65 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGE-----RFGILGPSGAGKTTFMRIIAGLDV------------PSTGELYFD 65 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTC-----EEEEECSCHHHHHHHHHHHHTSSC------------CSEEEEEET
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEEC
Confidence 467778888774 34 7788899999888 8999999999999999 8887654 555653 5
Q ss_pred Ccceee-----cCHH--HHHHHHHcCCccceeeehhh-hcC-----CCh----HHHHHHHhhccCCh
Q psy18088 104 GKAYHF-----VTRA--DMEERIAAGEFLEHAEFAAN-LYG-----TSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 104 G~~y~f-----vs~~--~f~~~~~~~~fle~~~~~gn-~yG-----~~~----~~I~~ile~v~L~~ 153 (166)
|.+... .... .+...+|...+.++.++.+| .|| .+. +.++++++.++|.+
T Consensus 66 g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 132 (353)
T 1oxx_K 66 DRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132 (353)
T ss_dssp TEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG
T ss_pred CEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence 544321 1111 11223344556666777777 343 333 34667777787764
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.04 E-value=7e-11 Score=96.27 Aligned_cols=104 Identities=10% Similarity=0.013 Sum_probs=69.5
Q ss_pred ceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcc
Q psy18088 30 ITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKA 106 (166)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~ 106 (166)
+++++++++. .++.++++.+++|+ +++|+||||||||||+ ++.+.-. |. |++ +|.+
T Consensus 4 ~l~~~~l~~~---~vl~~vsl~i~~Ge-----~~~liG~NGsGKSTLlk~l~Gl~~------------p~-G~i~~~g~~ 62 (249)
T 2qi9_C 4 VMQLQDVAES---TRLGPLSGEVRAGE-----ILHLVGPNGAGKSTLLARMAGMTS------------GK-GSIQFAGQP 62 (249)
T ss_dssp EEEEEEEEET---TTEEEEEEEEETTC-----EEEEECCTTSSHHHHHHHHTTSSC------------CE-EEEEETTEE
T ss_pred EEEEEceEEE---EEEeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CC-eEEEECCEE
Confidence 4667787776 57778899998888 8999999999999999 7777654 66 763 6655
Q ss_pred eeecCHHHHHH----HHHcCCccceeeehhh-hcCC----ChHHHHHHHhhccCChh
Q psy18088 107 YHFVTRADMEE----RIAAGEFLEHAEFAAN-LYGT----SQCGRQNGRNYLIFNTL 154 (166)
Q Consensus 107 y~fvs~~~f~~----~~~~~~fle~~~~~gn-~yG~----~~~~I~~ile~v~L~~~ 154 (166)
....+..++.+ +.|...+.+..++.+| .++. +.+.++++++.++|.+.
T Consensus 63 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~ 119 (249)
T 2qi9_C 63 LEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK 119 (249)
T ss_dssp GGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGG
T ss_pred CCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhH
Confidence 32223333332 2344445555567666 2332 35567888888887643
No 34
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.04 E-value=5.7e-12 Score=108.19 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=70.9
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ +|.++.. |.+|++ +|.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~ 65 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGE-----FMALLGPSGSGKSTLLYTIAGIYK------------PTSGKIYFDEK 65 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCC-----EEEEECCCCchHHHHHHHHhcCCC------------CCceEEEECCE
Confidence 466778887774 456778899998888 8999999999999999 8888654 666653 565
Q ss_pred ceeecCHH--HHHHHHHcCCccceeeehhh-hc-----CCChH----HHHHHHhhccCCh
Q psy18088 106 AYHFVTRA--DMEERIAAGEFLEHAEFAAN-LY-----GTSQC----GRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~fvs~~--~f~~~~~~~~fle~~~~~gn-~y-----G~~~~----~I~~ile~v~L~~ 153 (166)
+....+.. .+...+|...+.++.++.+| .| +.+.+ .++++++.++|.+
T Consensus 66 ~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 125 (362)
T 2it1_A 66 DVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK 125 (362)
T ss_dssp ECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT
T ss_pred ECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence 43222211 12223455556667777777 33 34433 4566777777753
No 35
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.04 E-value=5.4e-12 Score=107.81 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=71.4
Q ss_pred eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCcce
Q psy18088 31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAY 107 (166)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y 107 (166)
++++++++.+...++.++|+.+++|+ +++|+||||||||||+ +|.++.. |..|++ +|.+.
T Consensus 2 l~~~~l~~~y~~~~l~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~~~g~~i 64 (348)
T 3d31_A 2 IEIESLSRKWKNFSLDNLSLKVESGE-----YFVILGPTGAGKTLFLELIAGFHV------------PDSGRILLDGKDV 64 (348)
T ss_dssp EEEEEEEEECSSCEEEEEEEEECTTC-----EEEEECCCTHHHHHHHHHHHTSSC------------CSEEEEEETTEEC
T ss_pred EEEEEEEEEECCEEEeeeEEEEcCCC-----EEEEECCCCccHHHHHHHHHcCCC------------CCCcEEEECCEEC
Confidence 45667777764227778899998888 8999999999999999 8888765 777764 66653
Q ss_pred eecCHH--HHHHHHHcCCccceeeehhh-hcC-----CCh-HHHHHHHhhccCCh
Q psy18088 108 HFVTRA--DMEERIAAGEFLEHAEFAAN-LYG-----TSQ-CGRQNGRNYLIFNT 153 (166)
Q Consensus 108 ~fvs~~--~f~~~~~~~~fle~~~~~gn-~yG-----~~~-~~I~~ile~v~L~~ 153 (166)
...+.. .+...+|...+.++.++.+| .|| .+. +.++++++.++|.+
T Consensus 65 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~ 119 (348)
T 3d31_A 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH 119 (348)
T ss_dssp TTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT
T ss_pred CCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCch
Confidence 222211 11123455566677777777 333 332 46777888888764
No 36
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.04 E-value=7.6e-12 Score=107.69 Aligned_cols=107 Identities=13% Similarity=0.120 Sum_probs=70.8
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ +|.++.. |.+|++ +|.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~llGpnGsGKSTLLr~iaGl~~------------p~~G~I~i~g~ 65 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGE-----FMILLGPSGCGKTTTLRMIAGLEE------------PSRGQIYIGDK 65 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHHTSSC------------CSEEEEEETTE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCC-----EEEEECCCCcHHHHHHHHHHcCCC------------CCccEEEECCE
Confidence 366778888774 457788899999888 8999999999999999 8887654 556653 555
Q ss_pred ceee------cCHH--HHHHHHHcCCccceeeehhh-hc-----CCChH----HHHHHHhhccCCh
Q psy18088 106 AYHF------VTRA--DMEERIAAGEFLEHAEFAAN-LY-----GTSQC----GRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~f------vs~~--~f~~~~~~~~fle~~~~~gn-~y-----G~~~~----~I~~ile~v~L~~ 153 (166)
+... .+.. .+...+|...+.++.++.+| .| +.+.+ .++++++.++|.+
T Consensus 66 ~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~ 131 (372)
T 1g29_1 66 LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE 131 (372)
T ss_dssp EEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG
T ss_pred ECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch
Confidence 4322 2211 12223444556667777777 23 44433 4566777777754
No 37
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.02 E-value=3.2e-11 Score=97.44 Aligned_cols=104 Identities=12% Similarity=0.125 Sum_probs=66.0
Q ss_pred eEEeeeccee-e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 31 TVRILLNYRT-C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 31 ~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
++++++++.+ . ..++.++|+.+++|+ +++|+||||||||||+ ++.++.. |.+|++ +|.
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~ 64 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNS-----IIAFAGPSGGGKSTIFSLLERFYQ------------PTAGEITIDGQ 64 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTE-----EEEEECCTTSSHHHHHHHHTTSSC------------CSBSCEEETTE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence 4566777766 3 457788889998888 8999999999999999 7777654 666663 554
Q ss_pred ceeecCHH----HHHHHHHcCCccceeeehhh-hcC----CChHHHHHHHhhccCC
Q psy18088 106 AYHFVTRA----DMEERIAAGEFLEHAEFAAN-LYG----TSQCGRQNGRNYLIFN 152 (166)
Q Consensus 106 ~y~fvs~~----~f~~~~~~~~fle~~~~~gn-~yG----~~~~~I~~ile~v~L~ 152 (166)
+....+.. .+..+.|...+.+ .++.+| .++ ...+.++++++.+++.
T Consensus 65 ~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~ 119 (243)
T 1mv5_A 65 PIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119 (243)
T ss_dssp ESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCT
T ss_pred EhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChH
Confidence 42111111 1122233334444 477777 344 2345577777776665
No 38
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.02 E-value=1e-10 Score=94.93 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=70.8
Q ss_pred ceEEeeeccee--e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 30 ITVRILLNYRT--C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 30 ~~~~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
..++++|++.+ . ..++.++|+.+++|+ +++|+||||||||||+ ++.++.. |..|++ +
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~------------p~~G~I~i~ 69 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGE-----VIGIVGRSGSGKSTLTKLIQRFYI------------PENGQVLID 69 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEET
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEEC
Confidence 35677888777 2 457788899999888 8999999999999999 8877654 777764 7
Q ss_pred CcceeecCHHHHHHH----HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088 104 GKAYHFVTRADMEER----IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 104 G~~y~fvs~~~f~~~----~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~ 153 (166)
|.+....+...+.+. .|...++. .++.+| .++. +.+.++++++.+++.+
T Consensus 70 g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~ 126 (247)
T 2ff7_A 70 GHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHD 126 (247)
T ss_dssp TEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHH
T ss_pred CEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHH
Confidence 765432333333332 34444444 477777 3442 3455667777777654
No 39
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.02 E-value=1.2e-11 Score=98.86 Aligned_cols=109 Identities=15% Similarity=0.069 Sum_probs=66.7
Q ss_pred hcCceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 27 NAGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
+..+++++++++.+...++.++|+.+++|+ +++|+||||||||||+ ++.+... |..|++ +
T Consensus 7 ~~~~l~~~~ls~~y~~~il~~vsl~i~~Ge-----~~~iiG~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~ 69 (214)
T 1sgw_A 7 HGSKLEIRDLSVGYDKPVLERITMTIEKGN-----VVNFHGPNGIGKTTLLKTISTYLK------------PLKGEIIYN 69 (214)
T ss_dssp --CEEEEEEEEEESSSEEEEEEEEEEETTC-----CEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEET
T ss_pred CCceEEEEEEEEEeCCeEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCeEEEEC
Confidence 345788888887763267788899999888 7999999999999999 7777553 556653 5
Q ss_pred CcceeecCHHHHHHHHHcCCccceeeehhh------hcC--CChHHHHHHHhhccCCh
Q psy18088 104 GKAYHFVTRADMEERIAAGEFLEHAEFAAN------LYG--TSQCGRQNGRNYLIFNT 153 (166)
Q Consensus 104 G~~y~fvs~~~f~~~~~~~~fle~~~~~gn------~yG--~~~~~I~~ile~v~L~~ 153 (166)
|.+.. --...+..+.|...+.+..++.+| .++ ...+.++++++.++++.
T Consensus 70 g~~~~-~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~ 126 (214)
T 1sgw_A 70 GVPIT-KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD 126 (214)
T ss_dssp TEEGG-GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC
T ss_pred CEEhh-hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc
Confidence 54421 000001111233333344455444 122 12356777888887764
No 40
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.00 E-value=3.8e-11 Score=98.32 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=71.9
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.++.. |..|++ +|.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~liG~nGsGKSTLlk~l~Gl~~------------p~~G~i~~~g~ 68 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGD-----VISIIGSSGSGKSTFLRCINFLEK------------PSEGAIIVNGQ 68 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCE
Confidence 677888888874 457888999999888 8999999999999999 7777654 777764 676
Q ss_pred ceee----------cCHH---HHHH----HHHcCCccceeeehhh-hc------CCCh----HHHHHHHhhccCChh
Q psy18088 106 AYHF----------VTRA---DMEE----RIAAGEFLEHAEFAAN-LY------GTSQ----CGRQNGRNYLIFNTL 154 (166)
Q Consensus 106 ~y~f----------vs~~---~f~~----~~~~~~fle~~~~~gn-~y------G~~~----~~I~~ile~v~L~~~ 154 (166)
+... .+.. .+.+ ++|...+.++.++.+| .+ +.+. +.++++++.++|.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 145 (262)
T 1b0u_A 69 NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER 145 (262)
T ss_dssp ECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHH
T ss_pred EccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCch
Confidence 5421 2222 1222 2344455555566665 22 3342 345667778888754
No 41
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.00 E-value=8.2e-11 Score=96.21 Aligned_cols=109 Identities=17% Similarity=0.083 Sum_probs=70.8
Q ss_pred cCceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 28 AGITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
-++++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.+.-. |.+|++ +
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge-----i~~l~G~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~ 75 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGE-----IFGLIGPNGAGKTTTLRIISTLIK------------PSSGIVTVF 75 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEET
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCc-----EEEEECCCCCCHHHHHHHHhcCCC------------CCceEEEEC
Confidence 35788889998884 557788899999888 8999999999999999 7777654 666763 6
Q ss_pred CcceeecCHHHHHH----HHHcCCccceeeehhh------hcCCCh----HHHHHHHhhccCChh
Q psy18088 104 GKAYHFVTRADMEE----RIAAGEFLEHAEFAAN------LYGTSQ----CGRQNGRNYLIFNTL 154 (166)
Q Consensus 104 G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn------~yG~~~----~~I~~ile~v~L~~~ 154 (166)
|.+... ....+.+ +.|...+.+..++.+| .++.+. +.++++++.++|.+.
T Consensus 76 g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 139 (256)
T 1vpl_A 76 GKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK 139 (256)
T ss_dssp TEETTT-CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG
T ss_pred CEECCc-cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchH
Confidence 654211 1111211 2333445555566665 134443 345667777777643
No 42
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.00 E-value=1.3e-10 Score=95.40 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=70.8
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.++-. |..|++ +|.
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Ge-----i~~liG~NGsGKSTLlk~l~Gl~~------------p~~G~I~~~g~ 86 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGE-----VVVVIGPSGSGKSTFLRCLNLLED------------FDEGEIIIDGI 86 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCC-----EEEEEcCCCCcHHHHHHHHHcCCC------------CCCcEEEECCE
Confidence 688889998874 457888999999888 8999999999999999 7777654 667764 666
Q ss_pred cee--ecCHHHHHH----HHHcCCccceeeehhh-hc------CCCh----HHHHHHHhhccCCh
Q psy18088 106 AYH--FVTRADMEE----RIAAGEFLEHAEFAAN-LY------GTSQ----CGRQNGRNYLIFNT 153 (166)
Q Consensus 106 ~y~--fvs~~~f~~----~~~~~~fle~~~~~gn-~y------G~~~----~~I~~ile~v~L~~ 153 (166)
+.. ......+.+ +.|...+.++.++.+| .+ +.+. +.++++++.++|.+
T Consensus 87 ~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 151 (263)
T 2olj_A 87 NLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD 151 (263)
T ss_dssp ESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG
T ss_pred ECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch
Confidence 542 011122222 2344455555566665 22 3342 34566777777754
No 43
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.00 E-value=1.3e-10 Score=104.35 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=76.8
Q ss_pred CceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--
Q psy18088 29 GITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV-- 102 (166)
Q Consensus 29 ~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~-- 102 (166)
+..+++++++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.++.. |.+|++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~-----~~~ivG~sGsGKSTLl~~l~g~~~------------p~~G~i~~ 402 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGK-----TVALVGRSGSGKSTIASLITRFYD------------IDEGHILM 402 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTC-----EEEEEECTTSSHHHHHHHHTTTTC------------CSEEEEEE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhhccC------------CCCCeEEE
Confidence 4577888887774 457888899998888 8999999999999999 8887665 778874
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC----ChHHHHHHHhhccCCh
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT----SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~----~~~~I~~ile~v~L~~ 153 (166)
+|++..-.+..++.+. +.|...+..+++.+| .+|. +.+.++++++.+++.+
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~ 461 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 461 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHH
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHH
Confidence 8877544455555442 223333444688888 4553 4566788888777654
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.99 E-value=2.3e-10 Score=103.25 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=78.0
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG 104 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G 104 (166)
-.+++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.++.. |.+|++ +|
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~-----~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~~g 416 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQ-----KVALVGPTGSGKTTIVNLLMRFYD------------VDRGQILVDG 416 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTC-----EEEEECCTTSSTTHHHHHHTTSSC------------CSEEEEEETT
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCcC------------CCCeEEEECC
Confidence 467888887774 457889999999888 8999999999999999 8887765 888874 88
Q ss_pred cceeecCHHHHHHH---HHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCC
Q psy18088 105 KAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFN 152 (166)
Q Consensus 105 ~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~ 152 (166)
++....+..++.+. +.|...+..+++.+| .+|. +.+++.++++.+.+.
T Consensus 417 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 471 (598)
T 3qf4_B 417 IDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSD 471 (598)
T ss_dssp EEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCH
T ss_pred EEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCH
Confidence 88766666666553 233445556788888 4664 345677776655543
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.98 E-value=2e-10 Score=111.99 Aligned_cols=106 Identities=11% Similarity=0.104 Sum_probs=84.8
Q ss_pred ceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 30 ITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 30 ~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
-.++++|++.+. ..++.++|+.+++|+ .++|+||||||||||+ |+.++.+ |.+|+ +
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~-----~vaivG~sGsGKSTll~ll~~~~~------------~~~G~I~i 477 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQ-----TVALVGSSGCGKSTIISLLLRYYD------------VLKGKITI 477 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTC-----EEEEEECSSSCHHHHHHHHTTSSC------------CSEEEEEE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCc-----EEEEEecCCCcHHHHHHHhccccc------------cccCcccC
Confidence 467888887662 467888899998888 8999999999999999 8887776 88887 4
Q ss_pred CCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCC
Q psy18088 103 DGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFN 152 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~ 152 (166)
+|++..-++...++.. +.|..++..+++.+| .||.+ .+++.++++...++
T Consensus 478 dG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~ 534 (1321)
T 4f4c_A 478 DGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAE 534 (1321)
T ss_dssp TTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCH
T ss_pred CCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccch
Confidence 8988777788877764 577889999999999 68864 46677777665544
No 46
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.96 E-value=2.9e-10 Score=93.48 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=62.8
Q ss_pred CceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc-
Q psy18088 29 GITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV- 102 (166)
Q Consensus 29 ~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~- 102 (166)
+++++++|++.+. ..++.++++.+++|+ +++|+||||||||||+ +|.++.. |..|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge-----~~~i~G~nGsGKSTLlk~l~Gl~~------------p~~G~I~ 77 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGK-----VTALVGPNGSGKSTVAALLQNLYQ------------PTGGKVL 77 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEE
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhcCCC------------CCCCEEE
Confidence 4688889988774 457888899998888 8999999999999999 8877654 777874
Q ss_pred -CCcceeecCHHHHHH----HHHcCCccceeeehhh-hcC
Q psy18088 103 -DGKAYHFVTRADMEE----RIAAGEFLEHAEFAAN-LYG 136 (166)
Q Consensus 103 -~G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn-~yG 136 (166)
+|.+....+...+.+ +.|...++. .++.+| .+|
T Consensus 78 ~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~ 116 (271)
T 2ixe_A 78 LDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYG 116 (271)
T ss_dssp ETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTT
T ss_pred ECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhh
Confidence 776643333333332 134444444 477777 344
No 47
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.96 E-value=4.1e-10 Score=101.50 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=77.5
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
..+++++++.+. ..++.++|+.+++|| +++|+||||||||||+ ++.++.. |.+|++ +
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge-----~~~ivG~sGsGKSTll~~l~g~~~------------~~~G~i~i~ 403 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGS-----LVAVLGETGSGKSTLMNLIPRLID------------PERGRVEVD 403 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTC-----EEEEECSSSSSHHHHHHTTTTSSC------------CSEEEEEES
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCcc------------CCCcEEEEC
Confidence 467788887762 457888899998888 8999999999999999 8888765 888874 8
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCC
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFN 152 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~ 152 (166)
|++....+..++.+. +.|+.++..+++.+| .+|.+ .+++.++++...+.
T Consensus 404 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 459 (587)
T 3qf4_A 404 ELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIH 459 (587)
T ss_dssp SSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCH
T ss_pred CEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcH
Confidence 888766676666553 234455556789998 46643 34566666555443
No 48
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.95 E-value=3e-10 Score=102.00 Aligned_cols=106 Identities=12% Similarity=0.172 Sum_probs=76.1
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
..+++++++.+. ..++.+.|+.+++|+ +++|+||||||||||+ ++.++.. |.+|++ +
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~-----~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~~ 401 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGE-----TVAFVGMSGGGKSTLINLIPRFYD------------VTSGQILID 401 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTC-----EEEEECSTTSSHHHHHTTTTTSSC------------CSEEEEEET
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCC-----EEEEECCCCChHHHHHHHHhcCCC------------CCCcEEEEC
Confidence 467788887763 457888899998888 8999999999999999 8888765 888874 8
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccCC
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIFN 152 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L~ 152 (166)
|++....+..++.+. +.|...+..+++.+| .+|.+ .+++.++++.+.+.
T Consensus 402 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 457 (578)
T 4a82_A 402 GHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAH 457 (578)
T ss_dssp TEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCH
T ss_pred CEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 887665666655542 233445556688888 56653 34566666655543
No 49
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.94 E-value=1.1e-10 Score=94.19 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=59.3
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CCc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DGK 105 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G~ 105 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.++-. |..|++ +|.
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~ 68 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQ-----IVTLIGANGAGKTTTLSAIAGLVR------------AQKGKIIFNGQ 68 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEEEETTE
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCE
Confidence 567778887774 457788899999888 8999999999999999 7777654 667763 666
Q ss_pred ceeecCHHHHHH-----HHHcCCccceeeehhh
Q psy18088 106 AYHFVTRADMEE-----RIAAGEFLEHAEFAAN 133 (166)
Q Consensus 106 ~y~fvs~~~f~~-----~~~~~~fle~~~~~gn 133 (166)
+....+..+..+ +.|...+.++.++.+|
T Consensus 69 ~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 101 (240)
T 1ji0_A 69 DITNKPAHVINRMGIALVPEGRRIFPELTVYEN 101 (240)
T ss_dssp ECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred ECCCCCHHHHHhCCEEEEecCCccCCCCcHHHH
Confidence 543223222211 2344445555566666
No 50
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.94 E-value=1.5e-10 Score=95.79 Aligned_cols=50 Identities=14% Similarity=0.018 Sum_probs=42.1
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.++-.
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge-----~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAKGD-----KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC
Confidence 577888888874 457888999999888 8999999999999999 7777553
No 51
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.93 E-value=2.4e-10 Score=102.97 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=74.7
Q ss_pred eEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--C
Q psy18088 31 TVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--D 103 (166)
Q Consensus 31 ~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~ 103 (166)
.+++++++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.++.. |.+|++ +
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~-----~~~ivG~sGsGKSTLl~~l~g~~~------------p~~G~i~~~ 404 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGS-----VTALVGPSGSGKSTVLSLLLRLYD------------PASGTISLD 404 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTC-----EEEEECCTTSSSTHHHHHHTTSSC------------CSEEEEEET
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCcC------------CCCcEEEEC
Confidence 67888887774 247788899998888 8999999999999999 8877665 778874 8
Q ss_pred CcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC------ChHHHHHHHhhccCCh
Q psy18088 104 GKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT------SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 104 G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~------~~~~I~~ile~v~L~~ 153 (166)
|++..-.+...+.+. +.+...+...++.+| .+|. +.+.++++++.+++.+
T Consensus 405 g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~ 464 (595)
T 2yl4_A 405 GHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVA 464 (595)
T ss_dssp TEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHH
T ss_pred CEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHH
Confidence 877544455544432 223333344688888 4553 3466778888777653
No 52
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.93 E-value=1.4e-10 Score=95.84 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=49.9
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc--CC
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV--DG 104 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~--~G 104 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.++-. |..|++ +|
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge-----~~~iiGpnGsGKSTLl~~l~Gl~~------------p~~G~I~~~G 69 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGE-----VTAILGGNGVGKSTLFQNFNGILK------------PSSGRILFDN 69 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTS-----EEEEECCTTSSHHHHHHHHTTSSC------------CSEEEEEETT
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHHcCCC------------CCCeEEEECC
Confidence 578889998884 347889999999888 8999999999999999 7777654 777764 77
Q ss_pred cce
Q psy18088 105 KAY 107 (166)
Q Consensus 105 ~~y 107 (166)
.+.
T Consensus 70 ~~i 72 (275)
T 3gfo_A 70 KPI 72 (275)
T ss_dssp EEC
T ss_pred EEC
Confidence 664
No 53
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.92 E-value=6.1e-11 Score=96.08 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=36.9
Q ss_pred eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++++++++.+.. .+.++|+.+++ + +++|+||||||||||+ ++.++-.
T Consensus 2 l~~~~l~~~y~~-~l~~isl~i~~-e-----~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 2 FLKVRAEKRLGN-FRLNVDFEMGR-D-----YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CEEEEEEEEETT-EEEEEEEEECS-S-----EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEEEEEeCC-EEeeeEEEECC-E-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 456677776642 36788888888 8 8999999999999999 7777543
No 54
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.92 E-value=2.9e-10 Score=98.48 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=72.6
Q ss_pred CceEEeeeccee--e-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--c
Q psy18088 29 GITVRILLNYRT--C-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE--V 102 (166)
Q Consensus 29 ~~~~~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge--~ 102 (166)
+.+++++|++.+ . ..++.++|+.|++|| +++|+||||||||||+ +|.++.. .+|+ +
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge-----~~~llGpsGsGKSTLLr~iaGl~~-------------~~G~I~i 79 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQ-----RVGLLGRTGSGKSTLLSAFLRLLN-------------TEGEIQI 79 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTC-----EEEEEESTTSSHHHHHHHHHTCSE-------------EEEEEEE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCC-----EEEEECCCCChHHHHHHHHhCCCC-------------CCeEEEE
Confidence 457888999888 3 567889999999888 8999999999999999 7777542 2244 3
Q ss_pred CCcceeecCHHHHHH----HHHcCCccceeeehhhh--cC-CChHHHHHHHhhccCChh
Q psy18088 103 DGKAYHFVTRADMEE----RIAAGEFLEHAEFAANL--YG-TSQCGRQNGRNYLIFNTL 154 (166)
Q Consensus 103 ~G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn~--yG-~~~~~I~~ile~v~L~~~ 154 (166)
+|++..-.+...+.+ .+|...++. .++.+|. ++ ...+.++++++.++|.+.
T Consensus 80 ~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~ 137 (390)
T 3gd7_A 80 DGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSV 137 (390)
T ss_dssp SSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHH
T ss_pred CCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHH
Confidence 555543334443333 233333443 5777773 22 345678888888887643
No 55
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.89 E-value=1.8e-10 Score=93.53 Aligned_cols=48 Identities=10% Similarity=-0.156 Sum_probs=40.4
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGE-----VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCC
Confidence 466778887774 457788899999888 8999999999999999 77775
No 56
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.88 E-value=7.1e-10 Score=90.61 Aligned_cols=106 Identities=16% Similarity=0.116 Sum_probs=68.5
Q ss_pred CceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088 29 GITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE-- 101 (166)
Q Consensus 29 ~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge-- 101 (166)
.+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.++.. | .|+
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~------------~-~G~I~ 77 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGT-----TCALVGHTGSGKSTIAKLLYRFYD------------A-EGDIK 77 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHTTSSC------------C-EEEEE
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhccCC------------C-CeEEE
Confidence 4688889988774 247888899998888 8999999999999999 7777543 4 465
Q ss_pred cCCcceeecCHHHHHH----HHHcCCccceeeehhh-hcCC---ChHHHHHHHhhccCCh
Q psy18088 102 VDGKAYHFVTRADMEE----RIAAGEFLEHAEFAAN-LYGT---SQCGRQNGRNYLIFNT 153 (166)
Q Consensus 102 ~~G~~y~fvs~~~f~~----~~~~~~fle~~~~~gn-~yG~---~~~~I~~ile~v~L~~ 153 (166)
++|.+....+...+.+ +.|...++. .++.+| .+|. ..+.+.++++.+++.+
T Consensus 78 i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~ 136 (260)
T 2ghi_A 78 IGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYD 136 (260)
T ss_dssp ETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHH
T ss_pred ECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHH
Confidence 3665543223333222 223334443 577777 3443 3345666666666543
No 57
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.88 E-value=6.2e-11 Score=103.34 Aligned_cols=64 Identities=16% Similarity=0.148 Sum_probs=47.6
Q ss_pred cEEEEEcCCCCChhhhc--cccccccc--------eeeeEEeecCCCCCCccCCcceeecCHHHHHHHHHcCCc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEF 124 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~~~~~~~~f 124 (166)
++|+|+||||||||||. |...++.. +...++++||+|+.+|.+|++|||++..+|.+.+..+.|
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F 76 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRF 76 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHH
Confidence 48999999999999999 66665532 222356789999999999999999876655443333333
No 58
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.87 E-value=4.4e-11 Score=101.37 Aligned_cols=57 Identities=18% Similarity=0.105 Sum_probs=45.3
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccc--------eeeeEEeecCCCCCCccCCcceeecCHHHHH
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHFVTRADME 116 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~ 116 (166)
+++|+|+||||||||||. |...++.. +...++++|++|+.+|.+|++|||++..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~ 69 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPS 69 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChh
Confidence 458999999999999999 66665531 2345678899999999999999998765543
No 59
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.83 E-value=9.2e-11 Score=95.64 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=40.3
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.+.-
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge-----~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGD-----ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTC-----EEEEECCSSSSHHHHHHHHTTSS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 467778887764 346778899998888 8999999999999999 777754
No 60
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.81 E-value=6.7e-11 Score=100.05 Aligned_cols=58 Identities=14% Similarity=0.089 Sum_probs=45.3
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccc--------eeeeEEeecCCCCCCccCCcceeecCHHHHH
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHFVTRADME 116 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f~ 116 (166)
++++|+|+||||||||||. |...++.. +...++++||+|+++|.+|++|||++..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~ 76 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPS 76 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCcc
Confidence 4568999999999999999 66655531 2234567999999999999999998766543
No 61
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.78 E-value=2.4e-09 Score=104.13 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=79.7
Q ss_pred CceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088 29 GITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE-- 101 (166)
Q Consensus 29 ~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge-- 101 (166)
+-.++++|++.+. ..++.++++.+++|+ .++|+||||||||||+ ++.++.+ |.+|+
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~-----~~~ivG~sGsGKSTl~~ll~g~~~------------~~~G~i~ 448 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQ-----TVALVGNSGCGKSTTVQLMQRLYD------------PLDGMVS 448 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTC-----EEEEECCSSSSHHHHHHHTTTSSC------------CSEEEEE
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC------------CCCeEEE
Confidence 3567888887773 357888999999888 8999999999999999 8887765 88887
Q ss_pred cCCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCCC---hHHHHHHHhhccC
Q psy18088 102 VDGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGTS---QCGRQNGRNYLIF 151 (166)
Q Consensus 102 ~~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~~---~~~I~~ile~v~L 151 (166)
++|++...++...+... +.|..++..+++.+| .+|.+ .+++.++++...+
T Consensus 449 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~ 505 (1284)
T 3g5u_A 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANA 505 (1284)
T ss_dssp ETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTC
T ss_pred ECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCc
Confidence 48988777777776654 345556667789888 56643 4566666665544
No 62
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.74 E-value=1.3e-09 Score=89.43 Aligned_cols=48 Identities=10% Similarity=-0.054 Sum_probs=41.4
Q ss_pred ceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 30 ITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 30 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.++
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge-----~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGE-----VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTC-----EEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCC
Confidence 678889988874 457888999999888 8999999999999999 77775
No 63
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.71 E-value=1.4e-09 Score=87.55 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=40.7
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.++.
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGA-----LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHTTCS
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence 467778887774 457888899998888 8999999999999999 777654
No 64
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.71 E-value=1.5e-09 Score=89.01 Aligned_cols=46 Identities=13% Similarity=0.059 Sum_probs=37.2
Q ss_pred eEEeeecceee-----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 31 TVRILLNYRTC-----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 31 ~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++++++++.+. ..++.++++.++ |+ +++|+||||||||||+ ++.+.
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge-----~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GE-----KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SS-----EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CE-----EEEEECCCCCCHHHHHHHHhCC
Confidence 45667777664 457788899998 88 8999999999999999 76664
No 65
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.71 E-value=5.3e-09 Score=101.77 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=75.7
Q ss_pred CceEEeeecceee----ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc--
Q psy18088 29 GITVRILLNYRTC----ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE-- 101 (166)
Q Consensus 29 ~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge-- 101 (166)
+-.++++|++.+. ..++.++|+.|++|| .++|+||||||||||+ ++.++.+ |..|+
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge-----~v~ivG~sGsGKSTl~~~l~g~~~------------p~~G~I~ 1091 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQ-----TLALVGSSGCGKSTVVQLLERFYD------------PMAGSVF 1091 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSS-----EEEEECSSSTTHHHHHHHHTTSSC------------CSEEEEE
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCC-----EEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEE
Confidence 3467888887773 358899999999999 8999999999999999 8887765 77887
Q ss_pred cCCcceeecCHHHHHHH---HHcCCccceeeehhh-hcCC-----ChHHHHHHHhhccC
Q psy18088 102 VDGKAYHFVTRADMEER---IAAGEFLEHAEFAAN-LYGT-----SQCGRQNGRNYLIF 151 (166)
Q Consensus 102 ~~G~~y~fvs~~~f~~~---~~~~~fle~~~~~gn-~yG~-----~~~~I~~ile~v~L 151 (166)
++|++....+...+... +.|+.++..+++.+| .||. +.+.+.++++...+
T Consensus 1092 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~ 1150 (1284)
T 3g5u_A 1092 LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANI 1150 (1284)
T ss_dssp SSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTC
T ss_pred ECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCc
Confidence 48877655555544331 234445666788888 4553 34566666664443
No 66
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.69 E-value=7.6e-10 Score=94.41 Aligned_cols=57 Identities=12% Similarity=0.000 Sum_probs=44.5
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccc--------eeeeEEeecCCCCCCccCCcceeecCHHHH
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHFVTRADM 115 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~--------f~~~v~~TTR~p~~ge~~G~~y~fvs~~~f 115 (166)
++++|+|+||+|||||||. |...++.. +...++++|++|+.+|.+|++||+++..++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~ 105 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDP 105 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCc
Confidence 3468999999999999999 66665421 223456789999999999999998875554
No 67
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.69 E-value=2.9e-09 Score=87.09 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=65.4
Q ss_pred ceEEeeecceee------ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCcc
Q psy18088 30 ITVRILLNYRTC------ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEV 102 (166)
Q Consensus 30 ~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~ 102 (166)
+++++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.++.. |..|++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge-----~~~liG~nGsGKSTLl~~i~Gl~~------------p~~G~I 64 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGE-----CLLVAGNTGSGKSTLLQIVAGLIE------------PTSGDV 64 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTC-----EEEEECSTTSSHHHHHHHHTTSSC------------CSEEEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCC------------CCCcEE
Confidence 356677777764 357888899998888 8999999999999999 8777654 667764
Q ss_pred --CCcceeecCHHHHHH----HHHcC-Cccceeeehhh-hcC----CC----hHHHHHHHhhccCC
Q psy18088 103 --DGKAYHFVTRADMEE----RIAAG-EFLEHAEFAAN-LYG----TS----QCGRQNGRNYLIFN 152 (166)
Q Consensus 103 --~G~~y~fvs~~~f~~----~~~~~-~fle~~~~~gn-~yG----~~----~~~I~~ile~v~L~ 152 (166)
+|.+. +...+.+ +.|.. .++...++.+| .++ .+ .+.++++++.++|.
T Consensus 65 ~~~g~~~---~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~ 127 (266)
T 2yz2_A 65 LYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD 127 (266)
T ss_dssp EETTEEC---CHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCC
T ss_pred EECCEEC---chHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcC
Confidence 66542 1111111 11221 23334556565 232 12 24577788888886
No 68
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.68 E-value=2.7e-09 Score=85.41 Aligned_cols=50 Identities=18% Similarity=0.054 Sum_probs=40.9
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++++++.+. ..++.++++.+++|+ +++|+||||||||||+ ++.+.-.
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge-----~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQ-----LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTC-----EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCc
Confidence 567778887773 457888899998888 8999999999999999 7776543
No 69
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.43 E-value=1.6e-08 Score=84.01 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=31.9
Q ss_pred CceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 29 GITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
..++++++++.. ..++.++++.+++|+ +++|+||||||||||+ ++.++.
T Consensus 39 ~~l~~~~l~~~~-~~vl~~isl~i~~Ge-----~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 39 DSLSFSNFSLLG-TPVLKDINFKIERGQ-----LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp -----------C-CCSEEEEEEEECTTC-----EEEEEESTTSSHHHHHHHHTTSS
T ss_pred ceEEEEEEEEcC-ceEEEeeEEEEcCCC-----EEEEECCCCCcHHHHHHHHhcCC
Confidence 356677777753 456778888998888 8999999999999999 777654
No 70
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=98.42 E-value=7.3e-08 Score=81.18 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=59.0
Q ss_pred eecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccCCcceeecCH
Q psy18088 35 LLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTR 112 (166)
Q Consensus 35 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y~fvs~ 112 (166)
.++||+|.... .++.|+|+|+|| ||+||. |+..+|++|+.+++. +|
T Consensus 131 ~~~YE~V~~~~-----------~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~-~r----------------- 178 (308)
T 3kfv_A 131 YPPYERVVLRE-----------ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETV-SR----------------- 178 (308)
T ss_dssp CCSEEEEEEEE-----------CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC--------------------
T ss_pred CcCchheeccc-----------cCCCCeEEEeCc---cHHHHHHHHHHhCcccccccccc-cc-----------------
Confidence 46899998762 235679999999 599998 999999999999862 11
Q ss_pred HHHHHHHHcCCccceeeehhhhcCCChHHHHHHHh-----hccCChhHHhhCCccCCC
Q psy18088 113 ADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRN-----YLIFNTLAAKCLPTVFPF 165 (166)
Q Consensus 113 ~~f~~~~~~~~fle~~~~~gn~yG~~~~~I~~ile-----~v~L~~~~~~~l~~~~p~ 165 (166)
+ ++++.|+ ++++|+++++ +|+++.+|++.|+..+++
T Consensus 179 ~-----i~~~~fi------------s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~ 219 (308)
T 3kfv_A 179 T-----DSPSKII------------KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYY 219 (308)
T ss_dssp -----------CC------------CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCC
T ss_pred c-----ccCCCee------------cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCC
Confidence 1 2344444 8888998888 678889998888654443
No 71
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.40 E-value=5.3e-09 Score=88.62 Aligned_cols=55 Identities=11% Similarity=0.044 Sum_probs=40.4
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceee--------eEEeecCCCCCCccCCcceeecCHH
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGF--------SVSHTTRGPRPGEVDGKAYHFVTRA 113 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~--------~v~~TTR~p~~ge~~G~~y~fvs~~ 113 (166)
+.+.|+|+||+|||||||. |...+...+.. ..+++|++|+.+|.+|++|||++..
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~ 68 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIR 68 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCB
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeecc
Confidence 3458999999999999999 55444321111 2356899999999999998887643
No 72
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.16 E-value=3.8e-07 Score=69.13 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=21.3
Q ss_pred CCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088 48 PDSGIRSGRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 48 ~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
+|+.+++|+ +++|+||||||||||+
T Consensus 2 vsl~i~~ge-----i~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 2 MKLTIPELS-----LVVLIGSSGSGKSTFA 26 (171)
T ss_dssp EEEEEESSE-----EEEEECCTTSCHHHHH
T ss_pred ccccCCCCE-----EEEEECCCCCCHHHHH
Confidence 355666666 8999999999999999
No 73
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.16 E-value=6.3e-07 Score=81.44 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=36.6
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
...+++.++.+.+|++..+.+++|+||||||||||+ ++.++-
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence 446778899999999888999999999999999999 777654
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.10 E-value=6e-08 Score=81.41 Aligned_cols=48 Identities=21% Similarity=0.102 Sum_probs=35.3
Q ss_pred eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+++++|++.+...++.++++.|++|+ +++|+||||||||||+ ++.++.
T Consensus 102 i~~~~vs~~y~~~vL~~vsl~i~~Ge-----~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 102 FNYQNIELITFINALKLWLKGIPKKN-----CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCTTCS-----EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEEEEEEcChhhhccceEEecCCC-----EEEEECCCCCcHHHHHHHHhhhc
Confidence 44555555543345667778888777 8999999999999999 666543
No 75
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.09 E-value=1.7e-06 Score=78.56 Aligned_cols=45 Identities=18% Similarity=-0.057 Sum_probs=32.0
Q ss_pred eeecceeee--cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 34 ILLNYRTCI--SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 34 ~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++.+.. .++.+++ .+++|+ +++|+||||||||||+ ++.+.-.
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge-----~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGM-----VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTS-----EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCC-----EEEEECCCCChHHHHHHHHhCCCC
Confidence 344554432 2455666 677777 8999999999999999 7777543
No 76
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.08 E-value=1.1e-06 Score=78.49 Aligned_cols=45 Identities=16% Similarity=-0.057 Sum_probs=33.9
Q ss_pred eeecceeee--cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 34 ILLNYRTCI--SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 34 ~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+++++.+.. .++.+++ .|++|| +++|+||||||||||+ ++.+.-.
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge-----~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGM-----VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTS-----EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cCcEEEECCccccccCcC-cCCCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 366666642 2456676 777777 8999999999999999 7777543
No 77
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.06 E-value=1e-06 Score=79.92 Aligned_cols=31 Identities=35% Similarity=0.384 Sum_probs=24.2
Q ss_pred CCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 48 PDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 48 ~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.++.|++|| +++|+||||||||||+ ++.+.-
T Consensus 375 ~~~~v~~Ge-----i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 375 EPGEIRKGE-----VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp CCEEEETTC-----EEEEECCTTSSHHHHHHHHHTSS
T ss_pred cccccCCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence 344455555 8999999999999999 777654
No 78
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.06 E-value=9.7e-07 Score=70.34 Aligned_cols=35 Identities=11% Similarity=-0.207 Sum_probs=21.3
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..++.++++.+++++ +++|+||+|||||||+ ++.+
T Consensus 12 ~~~l~~isl~i~~g~-----iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 12 DLGTENLYFQSMRPF-----LIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -----------CCSE-----EEEEECSTTSSHHHHHHHHHH
T ss_pred ceeecceeccCCCCE-----EEEEECCCCCCHHHHHHHHHH
Confidence 356778888888777 8999999999999999 6655
No 79
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.05 E-value=1.8e-06 Score=73.49 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=38.2
Q ss_pred cEEEEEcCCCCChhhhc--ccccccc------ce--eeeEEeecCCCCCCccCCcceeecC
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVLD------RF--GFSVSHTTRGPRPGEVDGKAYHFVT 111 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~~------~f--~~~v~~TTR~p~~ge~~G~~y~fvs 111 (166)
++|+|+||||||||||. |...++. .+ ....+++|++|+..|..|..|++++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~d 68 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID 68 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHH
Confidence 58999999999999999 5555442 11 2344568999999998888877654
No 80
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.05 E-value=1.1e-06 Score=78.63 Aligned_cols=48 Identities=23% Similarity=0.087 Sum_probs=30.9
Q ss_pred eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++.+++++.+....+...++.|++|| +++|+||||||||||+ ++.+.-
T Consensus 288 l~~~~l~~~~~~~~l~~~~~~i~~Ge-----~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 288 VTYPRLVKDYGSFRLEVEPGEIKKGE-----VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEECCEEEEETTEEEEECCEEEETTC-----EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEeeEEEEECCEEEEeCccccCCCC-----EEEEECCCCCCHHHHHHHHhCCC
Confidence 44444444332112233455556666 8999999999999999 776654
No 81
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.04 E-value=1e-06 Score=66.90 Aligned_cols=33 Identities=12% Similarity=-0.155 Sum_probs=26.1
Q ss_pred CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.++|+.+++|+ +++|+||+|||||||+ ++.+
T Consensus 22 ~l~~vsl~i~~Ge-----~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 22 AEILLKLHTEKAI-----MVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp HHHHHHHCCSSCE-----EEEEECSTTSSHHHHHHHHHH
T ss_pred HHhccccccCCCC-----EEEEECCCCCCHHHHHHHHHH
Confidence 3445667777777 8999999999999999 5554
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.04 E-value=4.4e-07 Score=86.50 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=40.0
Q ss_pred ceEEeeecceee---ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC---ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++.++++++.+. ..++.++|+.+++|+ +++|+||||||||||+ ++.+...
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~Ge-----ivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSS-----RIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTC-----EEEECSCCCHHHHHHHHHHTTSSC
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 567778887663 346778888988888 8999999999999999 7776543
No 83
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.04 E-value=1.2e-06 Score=78.43 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 49 DSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 49 ~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
++.|++|| +++|+||||||||||+ ++.+.-.
T Consensus 288 ~~~i~~Ge-----i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 288 NGEAKEGE-----IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp CEEEETTC-----EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cceECCCC-----EEEEECCCCCCHHHHHHHHhCCCC
Confidence 44455555 8999999999999999 7777543
No 84
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.01 E-value=1.7e-06 Score=69.70 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=34.2
Q ss_pred EEEEEcCCCCChhhhc--ccccccccee--------eeEEeecCCCCCCccCCcceeecC
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFG--------FSVSHTTRGPRPGEVDGKAYHFVT 111 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~--------~~v~~TTR~p~~ge~~G~~y~fvs 111 (166)
+++|+||+|||||||. |...+...+- ....++|++|+..|..|..|+|++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~ 62 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLD 62 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEe
Confidence 7999999999999999 4443321111 112356888887888887777665
No 85
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.00 E-value=8.3e-07 Score=70.16 Aligned_cols=23 Identities=17% Similarity=-0.012 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCChhhhc-ccccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+.+++|+||||||||||+ ++.+.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 338999999999999999 77665
No 86
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.97 E-value=1.8e-06 Score=71.05 Aligned_cols=40 Identities=18% Similarity=0.088 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceeeeEEe-ecCCCCC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSH-TTRGPRP 99 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~-TTR~p~~ 99 (166)
.+.+|+|+||||||||||. |...++. ....++. ++|.+.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~-~~~~Is~D~~R~~~~ 74 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQHP 74 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechHhHHhch
Confidence 3568999999999999999 6555542 2344444 5565544
No 87
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.95 E-value=3.8e-06 Score=64.02 Aligned_cols=44 Identities=14% Similarity=0.010 Sum_probs=26.0
Q ss_pred eEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 31 TVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++++++++.+...++.+ +.+.++. .++|+|++|||||||+ .+.+
T Consensus 4 l~~~~~~~~~~~~~l~~--~~~~~~~-----~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 4 LNYQQTHFVMSAPDIRH--LPSDTGI-----EVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp -------CEEEESSGGG--SSCSCSE-----EEEEEECTTSSHHHHHTTTCC
T ss_pred hhhhhhhheeecCCHhH--CCCCCCc-----EEEEECCCCCCHHHHHHHHhC
Confidence 45667777775444333 4555444 8999999999999999 4443
No 88
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.93 E-value=4.3e-06 Score=75.95 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCccC
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVD 103 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge~~ 103 (166)
|.+++|+||||||||||+ ++.++-. |..|++.
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll~------------P~~G~i~ 135 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQK------------PNLGRFD 135 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSC------------CCTTTTC
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCC------------CCCceEe
Confidence 449999999999999999 7777654 7777763
No 89
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.90 E-value=3.6e-06 Score=63.63 Aligned_cols=25 Identities=16% Similarity=-0.000 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
.+.+++|+||||||||||+ ++.+.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 3458999999999999999 666555
No 90
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.85 E-value=2.4e-06 Score=75.85 Aligned_cols=36 Identities=11% Similarity=-0.134 Sum_probs=28.7
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
..++.++++.+++ + +++|+||||||||||+ ++.++.
T Consensus 17 ~~~l~~vsl~i~~-e-----~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 17 WNGFFARTFDFDE-L-----VTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp ETTEEEEEEECCS-S-----EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccccceEEEEcc-c-----eEEEECCCCCcHHHHHHHHhcCC
Confidence 3455677778877 6 8999999999999999 777644
No 91
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.80 E-value=5.5e-06 Score=64.24 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=19.5
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.+++|+||||||||||+ ++.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3559999999999999999 5554
No 92
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.78 E-value=6.2e-06 Score=68.63 Aligned_cols=31 Identities=29% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++++.+++++ +++|+|||||||||++ .+.+.
T Consensus 92 ~l~~~~~~g~-----vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 92 ELQLGFRKPA-----VIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCCCCSSSCE-----EEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccCCCc-----EEEEEcCCCCCHHHHHHHHHHH
Confidence 3455565555 8999999999999999 55553
No 93
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.77 E-value=7e-06 Score=63.15 Aligned_cols=34 Identities=15% Similarity=-0.007 Sum_probs=19.3
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
....++++.+.+++ .|+|+||+||||||+. .++.
T Consensus 13 ~~~~~~~~~~~~~~-----~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 13 LGTENLYFQSNAMV-----RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -----------CCC-----EEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCceeEecCCCC-----EEEEEcCCCCCHHHHHHHHHH
Confidence 34556777776555 8999999999999999 5543
No 94
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.75 E-value=6.7e-06 Score=74.81 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=28.8
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cc
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FL 79 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li 79 (166)
..++.++|+.|++|| +++|+||||||||||+ ++
T Consensus 335 ~~~L~~vsl~I~~Ge-----~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGT-----FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp STTCCSEEEEEETTS-----EEEEECSTTSSHHHHHTTT
T ss_pred ccccccceeEecCCC-----EEEEEeeCCCCHHHHHHHH
Confidence 346888899998888 8999999999999999 54
No 95
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.74 E-value=1.1e-05 Score=62.18 Aligned_cols=25 Identities=24% Similarity=-0.028 Sum_probs=20.1
Q ss_pred ccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 57 IHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 57 ~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+..+.+++|+||||||||||+ ++..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 334559999999999999999 5544
No 96
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.73 E-value=2.4e-06 Score=74.71 Aligned_cols=49 Identities=12% Similarity=0.023 Sum_probs=36.0
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
+.+++++++.+. ..+++++ +.+.+|+ +++|+||||||||||+ +|.++..
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq-----~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQ-----RMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTTC-----EEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ceEEeccceecCCCceEEeee-EEecCCC-----EEEEECCCCCCHHHHHHHHhcccC
Confidence 445556665553 4566666 7777777 8999999999999999 7776543
No 97
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.71 E-value=1.4e-05 Score=71.53 Aligned_cols=26 Identities=19% Similarity=0.040 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCChhhhc-ccccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRTVLD 84 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~~~~ 84 (166)
.|.+++|+||||||||||+ ++.+.-.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3459999999999999999 7777654
No 98
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.71 E-value=7.8e-06 Score=62.90 Aligned_cols=23 Identities=22% Similarity=-0.013 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCChhhhc-ccccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+.+++|+||||||||||+ ++.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 448999999999999999 66664
No 99
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.70 E-value=8.9e-06 Score=62.67 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=42.2
Q ss_pred cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCccC--Ccc-eeecCHHHHHHHHHcCCccceeeehhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVD--GKA-YHFVTRADMEERIAAGEFLEHAEFAANLY 135 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~~--G~~-y~fvs~~~f~~~~~~~~fle~~~~~gn~y 135 (166)
++++|+||||||||||+ |+..++. .+..+..+++.+...+++ |.+ |++++ ..+.... -..-.+|..+.+ .|
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~-~g~~v~~i~~~~~~~~id~~g~Ds~~~~~-~G~~~v~-i~~~~~~~~~~~-~~ 82 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHDMDVDKPGKDSYELRK-AGAAQTI-VASQQRWALMTE-TP 82 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC------------CHHH-HTCSEEE-EECSSEEEEEEE-CS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc-cCCceeEEeeCCCccccCCCCCceEEEEe-CCcceee-cccchhheeeee-cc
Confidence 48999999999999999 6665542 334455556656555554 333 32221 0000000 011234444333 47
Q ss_pred CCChHHHHHHHhh
Q psy18088 136 GTSQCGRQNGRNY 148 (166)
Q Consensus 136 G~~~~~I~~ile~ 148 (166)
+.+...+++++..
T Consensus 83 ~~~~~~L~~ll~r 95 (174)
T 1np6_A 83 DEEELDLQFLASR 95 (174)
T ss_dssp SSCCCCHHHHHHH
T ss_pred CCchhhHHHHHHh
Confidence 7776777777753
No 100
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.68 E-value=9.4e-06 Score=73.81 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=27.5
Q ss_pred ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhh
Q psy18088 42 ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSF 76 (166)
Q Consensus 42 ~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL 76 (166)
..++.++|+.|++|+ +++|+||||||||||
T Consensus 31 ~~~L~~vsl~i~~Ge-----~~~liGpNGaGKSTL 60 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGK-----LVVLTGLSGSGKSSL 60 (670)
T ss_dssp STTCCSEEEEEETTS-----EEEEECSTTSSHHHH
T ss_pred ccceeccEEEECCCC-----EEEEECCCCCCHHHH
Confidence 457889999999888 899999999999999
No 101
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=97.68 E-value=5.5e-06 Score=70.52 Aligned_cols=97 Identities=13% Similarity=0.012 Sum_probs=56.2
Q ss_pred cEEEEEcCCCCChhhh--c---cccccccceeeeEEeecCCCCCCccCCcce--eecCHHHHHHHHHcCCccceeeehhh
Q psy18088 61 ACILHVDFAMFGKTSF--L---FLRTVLDRFGFSVSHTTRGPRPGEVDGKAY--HFVTRADMEERIAAGEFLEHAEFAAN 133 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL--~---Li~~~~~~f~~~v~~TTR~p~~ge~~G~~y--~fvs~~~f~~~~~~~~fle~~~~~gn 133 (166)
|+|+|+||+++|--.+ + |+..++.+|+..|++| |.+++-+..+..+ ++.++..|+..++.+.++|
T Consensus 143 RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t-R~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~e------- 214 (337)
T 4dey_A 143 RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-RVTADISLAKRSVLNNPSKHAIIERSNTRSSLAE------- 214 (337)
T ss_dssp CCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE-EECSCGGGC-------------------CCCHHH-------
T ss_pred CceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE-eecchhhhcchhhhhcccchhhhcccccccchHH-------
Confidence 4799999999998864 3 8888888899998755 7776666666543 3455555666555555554
Q ss_pred hcCCChHHHHHHHh-----hccCChh-HHhhCCccCCCC
Q psy18088 134 LYGTSQCGRQNGRN-----YLIFNTL-AAKCLPTVFPFA 166 (166)
Q Consensus 134 ~yG~~~~~I~~ile-----~v~L~~~-~~~~l~~~~p~~ 166 (166)
++.+.+++.++.+ +|+++.+ |.+.++..+|.+
T Consensus 215 -v~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~ 252 (337)
T 4dey_A 215 -VQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAP 252 (337)
T ss_dssp -HHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCC
T ss_pred -HHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCC
Confidence 2223333333332 4667787 999999988864
No 102
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.66 E-value=6.7e-06 Score=66.96 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=19.1
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.+++|+||||||||||+ ++.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 3448999999999999999 5554
No 103
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.65 E-value=1.6e-05 Score=62.08 Aligned_cols=25 Identities=20% Similarity=0.022 Sum_probs=20.2
Q ss_pred cccCCcEEEEEcCCCCChhhhc-ccc
Q psy18088 56 RIHFFACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 56 ~~~~~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
.+..|.+++|+||||||||||+ .+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3444559999999999999999 554
No 104
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.64 E-value=1.4e-05 Score=61.41 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|+||||||||||. ++..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 5544
No 105
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.63 E-value=1.2e-05 Score=59.77 Aligned_cols=23 Identities=22% Similarity=0.007 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCCChhhhc-ccccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+.+|+|+||+|||||||. +++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999 66653
No 106
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.63 E-value=1.2e-05 Score=60.86 Aligned_cols=22 Identities=18% Similarity=0.001 Sum_probs=18.8
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+++|+||||||||||+ ++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 458999999999999999 5554
No 107
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.62 E-value=1.5e-05 Score=68.16 Aligned_cols=31 Identities=29% Similarity=0.213 Sum_probs=23.7
Q ss_pred CCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++++.+++++ +++|+|||||||||++ .+.+.
T Consensus 149 ~l~l~~~~g~-----vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 149 ELQLGFRKPA-----VIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SCCCCSSSSE-----EEEEECCTTSCHHHHHHHHHHH
T ss_pred CcceecCCCe-----EEEEEcCCCChHHHHHHHHHhh
Confidence 3455555555 8999999999999999 55553
No 108
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.61 E-value=7.7e-06 Score=69.41 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=24.9
Q ss_pred CCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 46 GNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 46 ~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.++++.+++|+ .++|+||||||||||+ ++.++
T Consensus 166 ~~l~~~i~~G~-----~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 166 SFLRRAVQLER-----VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHHHHTTC-----CEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCC-----EEEEECCCCCCHHHHHHHHHhc
Confidence 45566666666 8999999999999999 55443
No 109
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.61 E-value=1.7e-05 Score=61.05 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=19.1
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+++++|+||||||||||+ ++.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 6654
No 110
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.61 E-value=2e-05 Score=65.84 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=20.9
Q ss_pred cCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 58 HFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 58 ~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
..+.+++|+||||||||||+ +|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34559999999999999999 66664
No 111
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.60 E-value=9e-06 Score=68.32 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=23.6
Q ss_pred CCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++++.+++++ .++|+||||||||||+ ++.++
T Consensus 163 ~l~~~i~~g~-----~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 163 AIKDGIAIGK-----NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHHHHHHHTC-----CEEEEESTTSCHHHHHHHGGGG
T ss_pred hhhhhccCCC-----EEEEECCCCCCHHHHHHHHhCC
Confidence 3445555555 8999999999999999 55554
No 112
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.60 E-value=2.3e-05 Score=64.71 Aligned_cols=24 Identities=17% Similarity=0.038 Sum_probs=19.8
Q ss_pred CCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.+.+++|+||||||||||+ ++.+.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCcHHHHHHHhccc
Confidence 3558999999999999999 55543
No 113
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.60 E-value=1.6e-05 Score=70.87 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=25.0
Q ss_pred CCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 46 GNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 46 ~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.++++.+.+++ +++|+||||||||||+ +|.++
T Consensus 284 ~~Isl~i~~Ge-----VI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 284 EPLNVEGKAPF-----VILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CCCCCCSCTTE-----EEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceeeccCCe-----EEEEECCCcccHHHHHHHHHHH
Confidence 45666666555 8999999999999999 55553
No 114
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.59 E-value=1.7e-05 Score=66.04 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=20.2
Q ss_pred CCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.+.+++|+|||||||||++ .+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4669999999999999999 65543
No 115
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.58 E-value=1.3e-05 Score=76.58 Aligned_cols=41 Identities=7% Similarity=-0.016 Sum_probs=33.6
Q ss_pred eecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccc
Q psy18088 35 LLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 35 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
++++.+. ..++.++++.+.+|+ +++|+||||||||||+ +|.
T Consensus 440 ~ls~~yg~~~iL~~vsl~I~~Ge-----~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 440 EFSLAYGAKILLNKTQLRLKRAR-----RYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEETTC-----EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCEEeEecceEEEcCCC-----EEEEECCCCCCHHHHHHHHh
Confidence 5666663 456778899998888 8999999999999999 665
No 116
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.57 E-value=3.1e-06 Score=68.77 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=29.0
Q ss_pred ceEEeee-ccee--eecCCCCCCCCccc---ccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 30 ITVRILL-NYRT--CISASGNPDSGIRS---GRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 30 ~~~~~~~-~~~~--~~~~~~~~~~~v~~---~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+++++++ ++.+ ...++.+.++.+.+ ++ .|+|+||+||||||+. +++.
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~-----~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGR-----SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTC-----CEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCC-----EEEEECCCCCCHHHHHHHHHH
Confidence 5666677 6555 24567778888877 66 7999999999999999 6655
No 117
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.56 E-value=6.2e-06 Score=70.00 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=35.2
Q ss_pred ceEEeeecceee--ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 30 ITVRILLNYRTC--ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 30 ~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
..+..++++.+. ..++++. +.|.+|+ .++|+||||+|||||+ +|.+..
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq-----~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQ-----RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTC-----EEEEEECTTSSHHHHHHHHHHHS
T ss_pred CeeecccceecCCCCEEEEee-eeecCCC-----EEEEECCCCCCHHHHHHHHhcCC
Confidence 344455555553 4566666 7787777 8999999999999999 666644
No 118
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.54 E-value=1.2e-05 Score=63.80 Aligned_cols=20 Identities=10% Similarity=-0.076 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCChhhhc-ccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~ 80 (166)
.+++|+||+|||||||+ ++.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999 666
No 119
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.54 E-value=1.4e-05 Score=67.37 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCChhhhc-cccccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
++.++|+||||||||||+ ++.++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 448999999999999999 776654
No 120
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.53 E-value=2.6e-05 Score=58.09 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCChhhhc--cccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
+++|+|+|||||||||+. |...++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 458999999999999999 544443
No 121
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.51 E-value=4.3e-05 Score=60.19 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.|.+|+|.||+||||||++ ++.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4559999999999999999 77665
No 122
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.51 E-value=8.1e-06 Score=69.84 Aligned_cols=23 Identities=22% Similarity=0.075 Sum_probs=19.0
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.+++|+||||||||||+ ++.+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCEEEEECCCCccHHHHHHHHhc
Confidence 3558999999999999999 4443
No 123
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.50 E-value=3.2e-05 Score=66.87 Aligned_cols=53 Identities=28% Similarity=0.404 Sum_probs=33.5
Q ss_pred cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHH
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRAD 114 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~ 114 (166)
.-++|+|++|||||||+ |+.... .+....+.|||.+..+. .+|.++.+++...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G 237 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 237 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECCEEEEEEECCC
Confidence 47999999999999999 544432 35566778899887775 4777776665443
No 124
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.49 E-value=2.5e-05 Score=59.92 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhhc-ccccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.++|+||||||||||+ ++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999 55543
No 125
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.49 E-value=2.3e-05 Score=64.10 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhhc-ccccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.++|+||||||||||+ ++.+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999 55553
No 126
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.48 E-value=8.3e-06 Score=70.95 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=28.3
Q ss_pred CCCCCCCCccccc---------------ccCCcEEEEEcCCCCChhhhc-ccccc
Q psy18088 44 ASGNPDSGIRSGR---------------IHFFACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 44 ~~~~~~~~v~~~~---------------~~~~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++.++++.|++|+ ...+.+++|+||||||||||+ ++.+.
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4455677777666 223347999999999999999 55553
No 127
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.48 E-value=4.4e-05 Score=63.12 Aligned_cols=19 Identities=21% Similarity=0.001 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCCChhhhc
Q psy18088 59 FFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~ 77 (166)
.+++++|+||||||||||+
T Consensus 164 ~G~i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSIL 182 (302)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3559999999999999999
No 128
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.46 E-value=3.4e-05 Score=57.54 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=18.9
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+++|+||+||||||+. ++..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 458999999999999999 6554
No 129
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.44 E-value=4e-05 Score=61.43 Aligned_cols=21 Identities=19% Similarity=-0.010 Sum_probs=18.8
Q ss_pred CcEEEEEcCCCCChhhhc-ccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
+.+|+|+||||||||||+ +++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999 766
No 130
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.43 E-value=1.9e-05 Score=69.12 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=26.2
Q ss_pred CCCCCCCcccccccCCcE--EEEEcCCCCChhhhc-ccccc
Q psy18088 45 SGNPDSGIRSGRIHFFAC--ILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 45 ~~~~~~~v~~~~~~~~~~--ivLiGPSGsGKSTL~-Li~~~ 82 (166)
+.++++.+++|+ + ++|+||||||||||+ ++.+.
T Consensus 30 L~~vsl~i~~Ge-----i~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGF-----CFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CC-----EEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCC-----eeEEEEECCCCCCHHHHHHHHhCc
Confidence 556777888777 8 999999999999999 55543
No 131
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.40 E-value=4.8e-05 Score=58.85 Aligned_cols=21 Identities=14% Similarity=0.002 Sum_probs=18.5
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..|+|+||+||||||+. ++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999 6654
No 132
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.39 E-value=2.2e-05 Score=69.03 Aligned_cols=46 Identities=17% Similarity=0.035 Sum_probs=32.2
Q ss_pred cCceEEeeecceeeecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccccc
Q psy18088 28 AGITVRILLNYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
..++++.+|++.+. +.++.+++|+ +++|+||||||||||+ ++.++.
T Consensus 116 ~~mi~~~nl~~~y~-----~vsl~i~~Ge-----~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-----KIRMSNFEGP-----RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CTHHHHHHHHHHHH-----HHHHHSSSCC-----CEEEEESTTSSHHHHHHHHHHTT
T ss_pred cchhhhhhhhehhh-----cCceEeCCCC-----EEEEECCCCCCHHHHHHHHhCcc
Confidence 34455555554442 4556666666 8999999999999999 766643
No 133
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.36 E-value=6.3e-05 Score=59.75 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCCChhhhc-cc-cccccceeeeEEeecCCCCCC
Q psy18088 59 FFACILHVDFAMFGKTSFL-FL-RTVLDRFGFSVSHTTRGPRPG 100 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li-~~~~~~f~~~v~~TTR~p~~g 100 (166)
++.+|+|.||+||||||+. ++ ..+.. +..+ .+|+.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~-~~~~~p~~~ 65 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV-IMTREPGGV 65 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE-EEECTTTTC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc-eeecCCCCC
Confidence 4669999999999999999 44 44442 3333 456777554
No 134
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.36 E-value=6.4e-05 Score=57.72 Aligned_cols=23 Identities=22% Similarity=0.008 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.+|+|+||||||||||. ++..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999 5555
No 135
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.35 E-value=1.9e-05 Score=69.88 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=29.7
Q ss_pred eecCCCCCCC-CcccccccCCcEEEEEcCCCCChhhhc-c--cccc
Q psy18088 41 CISASGNPDS-GIRSGRIHFFACILHVDFAMFGKTSFL-F--LRTV 82 (166)
Q Consensus 41 ~~~~~~~~~~-~v~~~~~~~~~~ivLiGPSGsGKSTL~-L--i~~~ 82 (166)
...+++++++ .+.+|+ +++|+||||||||||+ + +.+.
T Consensus 24 g~~~Ld~i~~G~i~~Ge-----~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGR-----STLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp CCTTHHHHTTSSEETTS-----EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CchhHHHhcCCCCCCCe-----EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3566777787 777777 8999999999999999 5 5554
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.33 E-value=4.4e-05 Score=64.28 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.+++|+|||||||||++ .+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4669999999999999999 5554
No 137
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.32 E-value=5.4e-05 Score=57.83 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCChhhhc-cccc-cccceeeeEEeecCCCCC
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT-VLDRFGFSVSHTTRGPRP 99 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~-~~~~f~~~v~~TTR~p~~ 99 (166)
+.+|+|.|++||||||+. .+.. +.. .+..+ .++|.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~-~~~~~~~~ 49 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV-KHLYFPNR 49 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE-EEEESSCT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE-EEEecCCC
Confidence 568999999999999999 5544 321 12222 34666643
No 138
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.31 E-value=6.1e-05 Score=55.35 Aligned_cols=20 Identities=15% Similarity=-0.059 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+|+|+||+||||||+. .++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999 5543
No 139
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.30 E-value=5e-05 Score=58.98 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..++|+||||||||||+ ++.+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHh
Confidence 37999999999999999 5544
No 140
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.30 E-value=7e-05 Score=56.27 Aligned_cols=22 Identities=18% Similarity=-0.019 Sum_probs=18.6
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.++|+||+|+|||||+ .+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 4443
No 141
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.30 E-value=2.6e-05 Score=63.37 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=25.5
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..+++.++.+++|+ +++|+||||+|||||+ .+..
T Consensus 23 ~~Ld~i~~~l~~G~-----~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 23 TGINDKTLGARGGE-----VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTHHHHHCSBCTTC-----EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCe-----EEEEEeCCCCCHHHHHHHHHH
Confidence 34445555666666 8999999999999999 4444
No 142
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.30 E-value=6.8e-05 Score=61.95 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.+++|+||||||||||+ ++.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3459999999999999999 6655
No 143
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.29 E-value=7.4e-05 Score=57.52 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChhhhc--cccccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
++++|+|+||||||||+ |+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 47999999999999999 766654
No 144
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.29 E-value=7.5e-05 Score=55.29 Aligned_cols=22 Identities=18% Similarity=0.165 Sum_probs=18.5
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|+||+||||||+. .+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 458999999999999999 5444
No 145
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.29 E-value=3.3e-05 Score=64.71 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=19.0
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+++++|+||||||||||+ .+.+
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 3559999999999999999 4443
No 146
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.28 E-value=4.2e-05 Score=58.54 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=22.9
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecC
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTR 95 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR 95 (166)
+|+|.||+||||||++ |...+. ..+..+..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~-~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR-AAGRSVATLAF 36 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH-EEEEEEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEee
Confidence 7999999999999999 444443 23444444444
No 147
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.27 E-value=5.3e-05 Score=60.73 Aligned_cols=41 Identities=29% Similarity=0.272 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccce---eeeEEeecCCCCCC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRF---GFSVSHTTRGPRPG 100 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f---~~~v~~TTR~p~~g 100 (166)
.+.+|+|.||+||||||+. |.+.+...+ +..+ .+||.|...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~~t 69 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPGGT 69 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCCCC
Confidence 4669999999999999999 555554322 4444 478888543
No 148
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.26 E-value=4e-05 Score=61.14 Aligned_cols=22 Identities=14% Similarity=-0.019 Sum_probs=18.5
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+..|+|+||+||||||+. .+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 448999999999999999 5543
No 149
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.25 E-value=6.9e-05 Score=57.32 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++|+|+||+|||||||. .+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999 5543
No 150
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.24 E-value=5.7e-05 Score=63.51 Aligned_cols=45 Identities=9% Similarity=-0.080 Sum_probs=30.5
Q ss_pred eEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccc
Q psy18088 31 TVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 31 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
++..++++.+. ..++.++++.+.+++ +++|+||+|||||||+ .+.
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~-----~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAI-----RVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSE-----EEEEECCTTSCHHHHHHHHH
T ss_pred HeeCCcccccChHHHHHhCCcccCCCe-----EEEEECCCCCCHHHHHHHHH
Confidence 33444444442 234555666666666 8999999999999999 443
No 151
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.23 E-value=1.9e-05 Score=60.55 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChhhhc-cccccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRTVL 83 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~~~ 83 (166)
+.++|+||||||||||+ ++.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999 655543
No 152
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.21 E-value=0.00011 Score=55.66 Aligned_cols=22 Identities=27% Similarity=0.150 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.|+|+|++||||||+. .++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 448999999999999999 5554
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.19 E-value=0.00011 Score=56.25 Aligned_cols=20 Identities=25% Similarity=-0.079 Sum_probs=17.6
Q ss_pred cCCcEEEEEcCCCCChhhhc
Q psy18088 58 HFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 58 ~~~~~ivLiGPSGsGKSTL~ 77 (166)
..+.+++|+||+|||||||+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHH
Confidence 34558999999999999999
No 154
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.19 E-value=0.00011 Score=54.93 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|.||+||||||+. .++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 4443
No 155
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.18 E-value=0.00012 Score=53.40 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=17.3
Q ss_pred cEEEEEcCCCCChhhhc-ccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~ 80 (166)
.+|+|+||+||||||+. .+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 37999999999999999 443
No 156
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.17 E-value=8.7e-05 Score=58.64 Aligned_cols=39 Identities=18% Similarity=0.081 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCC
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRP 99 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ 99 (166)
.+.+|+|.||+||||||+. |...+.. .+..+ .+||.|..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v-~~~~~p~~ 45 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEV-QLTREPGG 45 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCE-EEEESSCS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCc-ccccCCCC
Confidence 3669999999999999999 4444442 33344 57788854
No 157
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.17 E-value=0.00011 Score=55.65 Aligned_cols=22 Identities=23% Similarity=0.073 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|.|++||||||+. .+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999 4443
No 158
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.17 E-value=7.3e-05 Score=60.22 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCC
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRP 99 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ 99 (166)
+.+|+|.||+||||||+. |...+. ..+..+..+||.|..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~ 67 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGG 67 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCC
Confidence 569999999999999999 444443 234444567888853
No 159
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.17 E-value=0.00012 Score=56.46 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=18.6
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+++|+||||||||||+ .+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 5443
No 160
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.16 E-value=0.00012 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.210 Sum_probs=19.1
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.+|+|+|++||||||+. .+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999 4443
No 161
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.15 E-value=0.00012 Score=54.43 Aligned_cols=23 Identities=17% Similarity=-0.052 Sum_probs=19.2
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.++.++|+||+|+|||||+ .+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 3558999999999999999 5544
No 162
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.15 E-value=0.00014 Score=54.48 Aligned_cols=16 Identities=19% Similarity=-0.027 Sum_probs=15.6
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
+.+|+||||||||||+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 8999999999999999
No 163
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.14 E-value=0.00012 Score=54.81 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.|+|+||+||||||+. .++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 5543
No 164
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.14 E-value=0.00014 Score=55.71 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+|+|+||+||||||+. +++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999 6655
No 165
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.13 E-value=0.00016 Score=60.07 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++++|+||||||||||+ .+.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHh
Confidence 38999999999999999 4444
No 166
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.12 E-value=0.00011 Score=54.82 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhhhc--cccccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
+|+|.||+||||||+. |...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 7999999999999999 444444
No 167
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.12 E-value=0.00011 Score=55.23 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=23.5
Q ss_pred EEEEEcCCCCChhhhc-ccc-ccccceeeeEEeecCCCCC
Q psy18088 62 CILHVDFAMFGKTSFL-FLR-TVLDRFGFSVSHTTRGPRP 99 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~-~~~~~f~~~v~~TTR~p~~ 99 (166)
+|+|.|++||||||+. .+. .+.. .+..+ .+||.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~-~g~~v-~~~~~~~~ 39 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKV-ILKREPGG 39 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-CCC-E-EEEESSCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeE-EEeeCCCC
Confidence 6999999999999999 444 3332 23333 35565543
No 168
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.11 E-value=0.00014 Score=62.03 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=20.5
Q ss_pred ccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 57 IHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 57 ~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+..+.+++|+|||||||||++ ++.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 445679999999999999999 4444
No 169
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.10 E-value=0.00015 Score=54.31 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=19.2
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.+|+|+|++||||||+. ++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999 5544
No 170
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.09 E-value=0.00013 Score=55.64 Aligned_cols=22 Identities=23% Similarity=0.007 Sum_probs=18.6
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|.|++||||||+. .+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 558999999999999999 4443
No 171
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.09 E-value=0.00015 Score=61.10 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+++|+||||||||||+ ++..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 448999999999999999 5554
No 172
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.07 E-value=0.00016 Score=59.67 Aligned_cols=22 Identities=14% Similarity=-0.118 Sum_probs=18.8
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|+||||||||||+ ++..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 5554
No 173
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.05 E-value=0.00015 Score=54.25 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|+||+||||||+. +++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 5543
No 174
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.05 E-value=0.00018 Score=62.50 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=19.7
Q ss_pred CCcEEEEEcCCCCChhhhc--ccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
.+.+++|+||+||||||++ ++...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 4569999999999999999 44443
No 175
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.03 E-value=0.00014 Score=58.16 Aligned_cols=41 Identities=22% Similarity=0.131 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCChhhhc-ccc-ccccceeeeEEeecCCCCC
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLR-TVLDRFGFSVSHTTRGPRP 99 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~-~~~~~f~~~v~~TTR~p~~ 99 (166)
.+.+|+|.|++||||||+. .+. .+....+..+..+||.|..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 3569999999999999999 444 4432144566676888863
No 176
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.03 E-value=0.00022 Score=54.43 Aligned_cols=25 Identities=12% Similarity=-0.217 Sum_probs=19.8
Q ss_pred ccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 57 IHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 57 ~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+..+.+++|+||+|+|||||+ .+..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344559999999999999999 4433
No 177
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.03 E-value=0.00016 Score=62.92 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=24.7
Q ss_pred CceEEeeecceee-ecCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc-ccc
Q psy18088 29 GITVRILLNYRTC-ISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 29 ~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
+++.+.++++.+. ..++.++++. |+|+||||||||||+ .+.
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~-----------I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFT-----------LMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEE-----------EEEECCTTSSHHHHHHHHT
T ss_pred CcEEEEecceeECCEEEecCCCEE-----------EEEECCCCCcHHHHHHHHh
Confidence 3566667766653 3445555433 599999999999999 443
No 178
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.02 E-value=0.00014 Score=54.23 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=15.9
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
.-|+|+|++|||||||+
T Consensus 5 ~ki~ivG~~g~GKStLl 21 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLL 21 (172)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 37999999999999999
No 179
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.02 E-value=0.00016 Score=62.36 Aligned_cols=44 Identities=14% Similarity=0.029 Sum_probs=29.4
Q ss_pred cCCcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc
Q psy18088 58 HFFACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE 101 (166)
Q Consensus 58 ~~~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge 101 (166)
..+..++|+|++|||||||+ .+.+..---....+.||+.|..|.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~ 62 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAK 62 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeee
Confidence 34558999999999999999 444421002234456677777765
No 180
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.01 E-value=0.0002 Score=53.80 Aligned_cols=22 Identities=18% Similarity=-0.053 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|+||+||||||+. .++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 5543
No 181
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.00022 Score=54.09 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=18.5
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|.|++||||||+. .+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 458999999999999999 4443
No 182
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.97 E-value=0.00024 Score=55.09 Aligned_cols=21 Identities=19% Similarity=-0.086 Sum_probs=18.2
Q ss_pred ccCCcEEEEEcCCCCChhhhc
Q psy18088 57 IHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 57 ~~~~~~ivLiGPSGsGKSTL~ 77 (166)
+..+.+++|+||+|+|||||+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHH
Confidence 344559999999999999999
No 183
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.96 E-value=0.00013 Score=65.88 Aligned_cols=21 Identities=33% Similarity=0.271 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhhhc-ccccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.++|+||||||||||+ ++.+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999 66654
No 184
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.95 E-value=2.8e-05 Score=62.42 Aligned_cols=20 Identities=15% Similarity=-0.037 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+++|+||||||||||+ +|.+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999 6655
No 185
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.95 E-value=0.00026 Score=54.65 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=19.8
Q ss_pred cCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 58 HFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 58 ~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.++.+|+|+|++||||||+. .+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34569999999999999999 5544
No 186
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.94 E-value=0.00022 Score=54.35 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.|+|+||+||||||+. +++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 6999999999999999 6655
No 187
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.94 E-value=0.00025 Score=52.84 Aligned_cols=23 Identities=9% Similarity=-0.142 Sum_probs=19.2
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++++|+|.|++||||||+. .+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999 5543
No 188
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.94 E-value=0.00021 Score=53.45 Aligned_cols=21 Identities=29% Similarity=0.197 Sum_probs=18.1
Q ss_pred CcEEEEEcCCCCChhhhc-ccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
++.|+|+|++||||||+. .++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 457999999999999999 554
No 189
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.94 E-value=0.00022 Score=60.59 Aligned_cols=19 Identities=21% Similarity=0.043 Sum_probs=17.3
Q ss_pred CCcEEEEEcCCCCChhhhc
Q psy18088 59 FFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~ 77 (166)
.+.+++|+||||||||||+
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4559999999999999999
No 190
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.94 E-value=0.00023 Score=53.58 Aligned_cols=20 Identities=15% Similarity=0.012 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+|+|.|++||||||+. +++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 6899999999999999 5554
No 191
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.91 E-value=0.00023 Score=67.52 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=26.1
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
..+.++++.+..|+ +++|+||||||||||+
T Consensus 598 ~~Lk~Vsl~I~~Ge-----iv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLGV-----FVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESSS-----EEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCCc-----EEEEEccCCCChhhhH
Confidence 45778888888888 8999999999999995
No 192
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.91 E-value=0.00028 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.044 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCChhhhc-ccccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
..+|+|+|++||||||+. +++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 348999999999999999 66553
No 193
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.90 E-value=0.00024 Score=67.85 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=26.6
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
..+.++|+.|+.|+ +++|+|+||||||||+
T Consensus 656 ~~Lk~Vsl~I~~Ge-----ivaI~G~nGSGKSTLl 685 (993)
T 2ygr_A 656 HNLRGIDVSFPLGV-----LTSVTGVSGSGKSTLV 685 (993)
T ss_dssp TTCCSEEEEEESSS-----EEEEECSTTSSHHHHH
T ss_pred ccccCceEEECCCC-----EEEEEcCCCCCHHHHH
Confidence 35778888888888 8999999999999999
No 194
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.90 E-value=0.00028 Score=52.65 Aligned_cols=22 Identities=9% Similarity=-0.105 Sum_probs=18.5
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|+|++||||||+. .+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 5443
No 195
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.89 E-value=0.00023 Score=53.64 Aligned_cols=23 Identities=17% Similarity=-0.071 Sum_probs=19.1
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.+|+|+||+||||||+. .++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 3458999999999999999 5544
No 196
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.88 E-value=0.00031 Score=52.89 Aligned_cols=23 Identities=17% Similarity=0.018 Sum_probs=19.1
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.+|+|+|++||||||+. .+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3569999999999999999 4443
No 197
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.87 E-value=0.00033 Score=54.06 Aligned_cols=22 Identities=9% Similarity=-0.117 Sum_probs=19.0
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|.|++||||||+. +++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 6655
No 198
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.86 E-value=0.00025 Score=55.02 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=18.5
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|+||+||||||+. .++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999 5544
No 199
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.83 E-value=0.00033 Score=62.28 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=19.8
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
.+..++|+||+||||||++ |+...+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4557999999999999999 544443
No 200
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.82 E-value=0.00026 Score=53.10 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=17.7
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.|+|+|++||||||+. .++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999 5543
No 201
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.81 E-value=0.00024 Score=56.15 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceee-eEEeecCCCCC
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGF-SVSHTTRGPRP 99 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~-~v~~TTR~p~~ 99 (166)
|.+|+|.|++||||||+. |...+.. .+. .+ .+||.|..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v-~~~rep~~ 43 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDM-VFTREPGG 43 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCE-EEEESSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcc-eeeeCCCC
Confidence 569999999999999999 4444432 233 23 67888853
No 202
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.80 E-value=0.00023 Score=67.78 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=26.7
Q ss_pred cCCCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088 43 SASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 43 ~~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
..+.++|+.|+.|+ +++|+|+||||||||+
T Consensus 638 ~~Lk~Vsl~I~~Ge-----iv~I~G~nGSGKSTLl 667 (972)
T 2r6f_A 638 HNLKNVSVKIPLGT-----FVAVTGVSGSGKSTLV 667 (972)
T ss_dssp SSCCSEEEEEESSS-----EEECCBCTTSSHHHHH
T ss_pred cccccceEEEcCCC-----EEEEEcCCCCCHHHHH
Confidence 35778888888888 8999999999999999
No 203
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.78 E-value=0.00034 Score=51.59 Aligned_cols=21 Identities=24% Similarity=0.035 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++|+|.|++||||||+. .++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999 5544
No 204
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.77 E-value=0.00041 Score=59.48 Aligned_cols=25 Identities=24% Similarity=-0.007 Sum_probs=20.5
Q ss_pred ccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 57 IHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 57 ~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+..+++++|+||+|+|||||+ ++.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 345559999999999999999 5554
No 205
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.77 E-value=0.0005 Score=54.67 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCCChhhhc--ccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
++.++|+||||+|||||. |+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999 66653
No 206
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.77 E-value=0.00035 Score=55.78 Aligned_cols=23 Identities=22% Similarity=0.036 Sum_probs=18.9
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+..|+|+||+||||||+. .+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3558999999999999999 4443
No 207
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.76 E-value=0.00024 Score=66.81 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=26.0
Q ss_pred CCCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088 44 ASGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 44 ~~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
.+.++|+.|+.|+ +++|+|+||||||||+
T Consensus 512 ~L~~vsl~i~~Ge-----iv~I~G~nGSGKSTLl 540 (842)
T 2vf7_A 512 NLDNLDVRFPLGV-----MTSVTGVSGSGKSTLV 540 (842)
T ss_dssp TEEEEEEEEESSS-----EEEEECCTTSSHHHHC
T ss_pred ccccceEEEcCCC-----EEEEEcCCCcCHHHHH
Confidence 5677788888888 8999999999999999
No 208
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.76 E-value=0.00037 Score=51.84 Aligned_cols=21 Identities=24% Similarity=-0.045 Sum_probs=14.3
Q ss_pred CcEEEEEcCCCCChhhhc-ccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
+.+|+|.|++||||||+. .++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999 554
No 209
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.76 E-value=0.00049 Score=54.71 Aligned_cols=28 Identities=14% Similarity=-0.025 Sum_probs=22.2
Q ss_pred cccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 54 SGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 54 ~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..+..++++|+|+||+||||+|+. ++..
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344456779999999999999999 6654
No 210
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.76 E-value=0.00042 Score=53.99 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=18.6
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|+||+||||||+. .++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 5543
No 211
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.75 E-value=0.00033 Score=52.29 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.|+|+||+||||||+. .++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999 5544
No 212
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.73 E-value=0.00046 Score=54.10 Aligned_cols=20 Identities=25% Similarity=0.107 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999 5544
No 213
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.72 E-value=0.00047 Score=52.13 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=15.4
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
.++|+||+|||||||+
T Consensus 31 kv~lvG~~g~GKSTLl 46 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLL 46 (191)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 6899999999999999
No 214
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.71 E-value=0.00053 Score=52.25 Aligned_cols=23 Identities=17% Similarity=-0.021 Sum_probs=19.0
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.+|+|+||+||||||+. .++.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3458999999999999999 5544
No 215
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.69 E-value=0.00045 Score=55.62 Aligned_cols=21 Identities=14% Similarity=-0.132 Sum_probs=18.2
Q ss_pred ccCCcEEEEEcCCCCChhhhc
Q psy18088 57 IHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 57 ~~~~~~ivLiGPSGsGKSTL~ 77 (166)
+..+.+++|+||+|+|||||+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH
Confidence 344559999999999999999
No 216
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.69 E-value=0.00057 Score=51.96 Aligned_cols=21 Identities=19% Similarity=0.021 Sum_probs=18.2
Q ss_pred CcEEEEEcCCCCChhhhc-ccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
.++|+|.|++||||||+. .+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999 554
No 217
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.68 E-value=0.00036 Score=62.63 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=20.6
Q ss_pred ccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 57 IHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 57 ~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+..+.+++|+|+||||||||+ ++++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHH
Confidence 345569999999999999999 6554
No 218
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.67 E-value=0.00055 Score=51.83 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++|+|.|++||||||+. .++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999 5544
No 219
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.66 E-value=0.00025 Score=60.00 Aligned_cols=21 Identities=14% Similarity=-0.156 Sum_probs=18.1
Q ss_pred cCCcEEEEEcCCCCChhhhc-cc
Q psy18088 58 HFFACILHVDFAMFGKTSFL-FL 79 (166)
Q Consensus 58 ~~~~~ivLiGPSGsGKSTL~-Li 79 (166)
..+ +++|+||||||||||+ .|
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI 80 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDAL 80 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHH
Confidence 345 7999999999999999 55
No 220
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.64 E-value=0.00048 Score=52.09 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=15.3
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
.++|+||+|||||||+
T Consensus 7 kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5899999999999999
No 221
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.62 E-value=0.00064 Score=54.87 Aligned_cols=22 Identities=18% Similarity=0.165 Sum_probs=18.3
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+++|+|+||+||||||+. .+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999 4443
No 222
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.61 E-value=0.00067 Score=50.67 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.6
Q ss_pred EEEEEcCCCCChhhhc--ccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~ 80 (166)
-|+|+|++|||||||+ ++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999 554
No 223
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.61 E-value=0.00036 Score=57.56 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=14.4
Q ss_pred EEEEcCCCCChhhhc
Q psy18088 63 ILHVDFAMFGKTSFL 77 (166)
Q Consensus 63 ivLiGPSGsGKSTL~ 77 (166)
|+|+||||||||||+
T Consensus 21 I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 21 LMVVGESGLGKSTLI 35 (301)
T ss_dssp EEEEEETTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 599999999999999
No 224
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.61 E-value=0.00064 Score=54.66 Aligned_cols=21 Identities=24% Similarity=-0.024 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+|+|.||||||||||. ++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 48999999999999999 6653
No 225
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.60 E-value=0.00066 Score=52.51 Aligned_cols=22 Identities=14% Similarity=-0.010 Sum_probs=18.5
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|+||+||||||+. .++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 5544
No 226
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.59 E-value=0.00029 Score=66.84 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCCCCcccccccCCcEEEEEcCCCCChhhhc-ccc
Q psy18088 47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
++++.+++++ +++|+||||+||||++ .+.
T Consensus 665 dvsl~~~~g~-----i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 665 NTDLSEDSER-----VMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEECTTSCC-----EEEEESCCCHHHHHHHHHHH
T ss_pred cccccCCCCe-----EEEEECCCCCchHHHHHHHH
Confidence 3344555444 8999999999999999 554
No 227
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.59 E-value=0.0006 Score=57.95 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcce
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAY 107 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y 107 (166)
.++|+|++|||||||+ |..... .....+.+|+.+..+. ++|..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~--~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ--KVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc--cccCCcccccCCEEEEEEECCEEE
Confidence 5999999999999999 544322 3334556777776654 355443
No 228
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.56 E-value=0.00065 Score=52.13 Aligned_cols=19 Identities=16% Similarity=0.081 Sum_probs=16.5
Q ss_pred EEEEEcCCCCChhhhc-ccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~ 80 (166)
.|+|+||+||||||+. .+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 4889999999999999 553
No 229
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.56 E-value=0.0021 Score=47.48 Aligned_cols=16 Identities=31% Similarity=0.235 Sum_probs=15.2
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
-|+|+|++|||||||+
T Consensus 16 ki~vvG~~~~GKssL~ 31 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNL 31 (198)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999999
No 230
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.55 E-value=0.00071 Score=49.63 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.8
Q ss_pred EEEEEcCCCCChhhhc--ccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~ 80 (166)
.++|+|++|||||||+ +..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999 544
No 231
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.55 E-value=0.00069 Score=57.10 Aligned_cols=27 Identities=26% Similarity=0.043 Sum_probs=21.3
Q ss_pred ccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 55 GRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 55 ~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+..++++.|+||+|||||||+ .+..
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44556669999999999999999 4433
No 232
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.54 E-value=0.00068 Score=50.57 Aligned_cols=20 Identities=25% Similarity=0.046 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+|+|.|++||||||+. .+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999 4443
No 233
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.54 E-value=0.00062 Score=48.80 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhhc--ccccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
-|+|+|++|||||||+ ++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 4899999999999999 65543
No 234
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.53 E-value=0.00093 Score=49.54 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=16.0
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
.+.+|+||+|+|||||+
T Consensus 24 g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 48999999999999999
No 235
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.53 E-value=0.00058 Score=56.16 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCChhhhc--cccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
.+++|+|++|||||||+ |+..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 37999999999999999 5543
No 236
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.51 E-value=0.00079 Score=53.48 Aligned_cols=22 Identities=18% Similarity=-0.140 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..+|+|.|++||||||+. .++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 348999999999999999 5544
No 237
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.50 E-value=0.0011 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=20.5
Q ss_pred CCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088 47 NPDSGIRSGRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 47 ~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
++++.+++ +++++|+||+|+||||++
T Consensus 97 ~l~~~~~~-----~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 97 RIDFKENR-----LNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp CCCCCTTS-----CEEEEEESSTTSSHHHHH
T ss_pred CccccCCC-----CeEEEEECCCCCCHHHHH
Confidence 45555444 458999999999999999
No 238
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.49 E-value=0.00079 Score=51.74 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=16.9
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.|+|+||+||||||+. .+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999 5543
No 239
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.49 E-value=0.00079 Score=53.64 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|.+|||||||+ |+..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999 5554
No 240
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.48 E-value=0.00091 Score=52.42 Aligned_cols=22 Identities=14% Similarity=-0.133 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+..|+|+|++||||||+. +++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 5554
No 241
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.48 E-value=0.00068 Score=55.72 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=15.3
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|.|||||||||+. .+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 448999999999999999 4443
No 242
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.46 E-value=0.00028 Score=61.33 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.7
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..++|+|++|||||||+ .+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg 179 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTR 179 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCS
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 37999999999999999 4443
No 243
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.44 E-value=0.0013 Score=56.63 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.8
Q ss_pred cCCcEEEEEcCCCCChhhhc--cccc
Q psy18088 58 HFFACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 58 ~~~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
..+.+|+|+||+||||||+. |...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999 5544
No 244
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.43 E-value=0.001 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|+|++||||||+. .+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 458999999999999999 4443
No 245
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.41 E-value=0.00032 Score=53.40 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ +...
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999 5543
No 246
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.39 E-value=0.0011 Score=52.22 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
-++|+||+|+|||||+ .+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999 5554
No 247
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.39 E-value=0.0011 Score=52.13 Aligned_cols=23 Identities=17% Similarity=-0.019 Sum_probs=19.2
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+..|+|+|++||||||+. +++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 3458999999999999999 5554
No 248
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.39 E-value=0.00063 Score=63.60 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+++++|+||||+||||++ ++.+
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 3559999999999999999 5554
No 249
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.38 E-value=0.001 Score=48.87 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.|+|.|++||||||+. .++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 5554
No 250
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.38 E-value=0.0014 Score=51.99 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCCChhhhc--cccccc
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
.+.+|+|.|++||||||+. |.+.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3669999999999999999 544444
No 251
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.38 E-value=0.0013 Score=50.77 Aligned_cols=20 Identities=25% Similarity=0.012 Sum_probs=17.4
Q ss_pred cCCcEEEEEcCCCCChhhhc
Q psy18088 58 HFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 58 ~~~~~ivLiGPSGsGKSTL~ 77 (166)
..+.+++|+||+|+|||||+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 34558999999999999997
No 252
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.37 E-value=0.00084 Score=55.70 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..++|+||+|+|||||+ ++.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 47999999999999999 6655
No 253
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.37 E-value=0.001 Score=56.37 Aligned_cols=16 Identities=19% Similarity=0.083 Sum_probs=15.3
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
+++|+||+|||||||+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7889999999999999
No 254
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.36 E-value=0.0011 Score=49.09 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.9
Q ss_pred EEEEEcCCCCChhhhc--ccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~ 80 (166)
.|+|+|++|||||||+ |..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999 554
No 255
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.36 E-value=0.0011 Score=56.81 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=16.8
Q ss_pred CcEEEEEcCCCCChhhhc
Q psy18088 60 FACILHVDFAMFGKTSFL 77 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~ 77 (166)
+.+++|+||||||||||+
T Consensus 26 ~~~~~i~G~nG~GKstll 43 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMM 43 (430)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 459999999999999999
No 256
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.35 E-value=0.00068 Score=64.41 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=17.8
Q ss_pred CcEEEEEcCCCCChhhhc-cc
Q psy18088 60 FACILHVDFAMFGKTSFL-FL 79 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li 79 (166)
+++++|+||||+||||++ .+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 459999999999999999 55
No 257
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.34 E-value=0.0015 Score=54.39 Aligned_cols=23 Identities=26% Similarity=0.034 Sum_probs=19.0
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+++++|+||+||||||++ .++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 4569999999999999999 4443
No 258
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.32 E-value=0.0012 Score=53.54 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhhhc-ccccc
Q psy18088 63 ILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 63 ivLiGPSGsGKSTL~-Li~~~ 82 (166)
++|+||+|+|||||+ .+++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999 65553
No 259
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.31 E-value=0.0011 Score=51.28 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=18.5
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+..|+|+|++||||||+. +++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999 5554
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.31 E-value=0.0011 Score=54.67 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=17.4
Q ss_pred CCcEEEEEcCCCCChhhhc
Q psy18088 59 FFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~ 77 (166)
.+++++|+||+||||||++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3569999999999999999
No 261
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.30 E-value=0.00069 Score=51.72 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCChhhhc--cccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
.-|+|+|++|||||||+ |+..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 36899999999999999 6655
No 262
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.29 E-value=0.0022 Score=46.05 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999 5543
No 263
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.29 E-value=0.0013 Score=63.01 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=18.1
Q ss_pred CcEEEEEcCCCCChhhhc-cc
Q psy18088 60 FACILHVDFAMFGKTSFL-FL 79 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li 79 (166)
+++++|+||||+||||++ .+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 569999999999999999 55
No 264
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.29 E-value=0.0014 Score=54.19 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=15.7
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
+.+|+||+|||||||+
T Consensus 26 ~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEEECCTTTCSTHHH
T ss_pred cEEEECCCCCcHHHHH
Confidence 8999999999999999
No 265
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.29 E-value=0.0013 Score=53.51 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=18.9
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..+|+|.|++||||||+. .++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 5554
No 266
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.28 E-value=0.0013 Score=49.53 Aligned_cols=20 Identities=25% Similarity=0.384 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ +...
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999 5543
No 267
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.25 E-value=0.0015 Score=54.61 Aligned_cols=19 Identities=32% Similarity=0.258 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--ccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~ 80 (166)
.|+|+|++|||||||+ |+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 7999999999999999 554
No 268
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.22 E-value=0.0014 Score=48.36 Aligned_cols=21 Identities=24% Similarity=0.263 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..|+|.|++||||||+. +++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999 6554
No 269
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.21 E-value=0.0016 Score=52.24 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
-++|+||+|+|||||+ .+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 3899999999999999 5554
No 270
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.19 E-value=0.0014 Score=51.13 Aligned_cols=20 Identities=20% Similarity=0.061 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+|+|.||+||||||+. .+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999 5544
No 271
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.17 E-value=0.0021 Score=46.84 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=18.6
Q ss_pred CcEEEEEcCCCCChhhhc--ccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
++.++|.||+|+|||+|+ +....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999 54443
No 272
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.17 E-value=0.0015 Score=46.70 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999 5544
No 273
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.16 E-value=0.0016 Score=50.74 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=18.9
Q ss_pred CcEEEEEcCCCCChhhhc--cccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
++-++|.|+||+|||||. |+..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 558999999999999999 6654
No 274
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.16 E-value=0.0018 Score=61.36 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=22.2
Q ss_pred CCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088 45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
+.|+|..+ +.+++++|.|+||||||||+
T Consensus 14 Lkni~~~i-----p~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 14 LKNITVRI-----PKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp CCSBCCEE-----ETTSEEEEEESTTSSSHHHH
T ss_pred cCcceecc-----CCCcEEEEECCCCCcHHHHH
Confidence 45556554 45559999999999999999
No 275
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.14 E-value=0.0016 Score=55.47 Aligned_cols=19 Identities=21% Similarity=-0.073 Sum_probs=16.9
Q ss_pred EEEEEcCCCCChhhhc-ccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~ 80 (166)
+++|+||||+|||||+ .+.
T Consensus 28 ~~~i~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAY 47 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHH
Confidence 8999999999999999 443
No 276
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.14 E-value=0.0017 Score=47.07 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999 6544
No 277
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.12 E-value=0.0019 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.058 Sum_probs=18.1
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.++|.||+|+|||||+ .+..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 346899999999999999 5544
No 278
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.11 E-value=0.0024 Score=50.82 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=19.2
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.+|+|.|+.||||||+. ++..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 3569999999999999999 5544
No 279
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.11 E-value=0.0016 Score=60.62 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+++++|+||||+||||++ ++.+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHh
Confidence 679999999999999999 5554
No 280
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.10 E-value=0.0017 Score=56.17 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCChhhhc-cccccccceeeeEEeecCCCCCCc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRTVLDRFGFSVSHTTRGPRPGE 101 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~~~~~f~~~v~~TTR~p~~ge 101 (166)
+..++|+|++|||||||+ .+.+.. ......+.||..|..|.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~g~ 63 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNESR 63 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCceeEE
Confidence 336999999999999999 443322 12234456777666553
No 281
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.10 E-value=0.0017 Score=52.90 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
.|+|+|++|||||||+ |...
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999 5543
No 282
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.09 E-value=0.0024 Score=48.75 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=17.2
Q ss_pred CCcEEEEEcCCCCChhhhc
Q psy18088 59 FFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~ 77 (166)
.++.++|.||+|+|||||+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999999
No 283
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.09 E-value=0.002 Score=55.61 Aligned_cols=22 Identities=9% Similarity=-0.120 Sum_probs=18.8
Q ss_pred cccCCcEEEEEcCCCCChhhhc
Q psy18088 56 RIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 56 ~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
-+..+.++.|+||||||||||+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLC 195 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHH
Confidence 3445559999999999999999
No 284
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.08 E-value=0.0019 Score=46.48 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ +...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3899999999999999 5543
No 285
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.06 E-value=0.0017 Score=46.25 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=16.9
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+++|++|||||||+ ++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999 5543
No 286
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.05 E-value=0.0022 Score=46.66 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999 6544
No 287
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.04 E-value=0.0023 Score=53.80 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=18.2
Q ss_pred CcEEEEEcCCCCChhhhc--ccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLR 80 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~ 80 (166)
+..|+|+|++|||||||+ |+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 448999999999999999 554
No 288
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.04 E-value=0.0024 Score=49.47 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=16.1
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
.+.+|+||+|+|||||+
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 48999999999999999
No 289
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.04 E-value=0.0018 Score=46.46 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=16.9
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999 5543
No 290
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.04 E-value=0.0019 Score=47.06 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999 5544
No 291
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.03 E-value=0.0026 Score=46.31 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCChhhhc--cccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
.-|+|+|++|||||||+ ++..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999 5543
No 292
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.02 E-value=0.0025 Score=53.08 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=16.0
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
.+.+|+||+|+|||||+
T Consensus 24 ~~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 48999999999999999
No 293
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.02 E-value=0.0018 Score=49.88 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.|+|.||+||||||+. .+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999 5544
No 294
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0021 Score=46.18 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999 6543
No 295
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.01 E-value=0.0018 Score=60.92 Aligned_cols=21 Identities=19% Similarity=0.149 Sum_probs=18.6
Q ss_pred ccCCcEEEEEcCCCCChhhhc
Q psy18088 57 IHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 57 ~~~~~~ivLiGPSGsGKSTL~ 77 (166)
++.+++++|.|+||||||||+
T Consensus 33 iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 33 VPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EESSSEEEEESSTTSSHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHH
Confidence 445669999999999999999
No 296
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.00 E-value=0.002 Score=46.11 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999 5543
No 297
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.99 E-value=0.0037 Score=45.84 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=16.8
Q ss_pred EEEEEcCCCCChhhhc--ccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~ 80 (166)
-|+|+|++|||||||+ |+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999 554
No 298
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.98 E-value=0.0021 Score=46.30 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999 6554
No 299
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.98 E-value=0.0021 Score=46.84 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999 6543
No 300
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.98 E-value=0.0021 Score=46.41 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999 5543
No 301
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.0026 Score=47.22 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCChhhhc--cccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
.-|+|+|++|||||||+ |...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999 5554
No 302
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.96 E-value=0.0034 Score=46.58 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCChhhhc--cccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
.-|+|+|++|||||||+ |+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999 6654
No 303
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.96 E-value=0.002 Score=46.39 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999 5543
No 304
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.96 E-value=0.0021 Score=50.39 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhhc-ccccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRTV 82 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~~ 82 (166)
.|+|+||+||||+|+. .++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999 66553
No 305
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.96 E-value=0.0019 Score=53.14 Aligned_cols=37 Identities=24% Similarity=0.186 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCC
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPR 98 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~ 98 (166)
-+|+|+|++|||||||+ |+..... .....+.|||...
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~ 49 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRV 49 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEE
Confidence 48999999999999999 6654321 1233344566543
No 306
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.95 E-value=0.0021 Score=47.16 Aligned_cols=20 Identities=30% Similarity=0.286 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999 6543
No 307
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.94 E-value=0.0022 Score=46.05 Aligned_cols=20 Identities=15% Similarity=0.306 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999 5543
No 308
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.94 E-value=0.0028 Score=55.75 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=25.4
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHHHH
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADMEE 117 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f~~ 117 (166)
.|+|+|++|+|||||+ |+.... .+....+.|||...... .+|..+.+++-..++.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 5999999999999999 665432 24556677888765543 4777778887666543
No 309
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.92 E-value=0.0025 Score=47.46 Aligned_cols=20 Identities=30% Similarity=0.389 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ +...
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999 6554
No 310
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.92 E-value=0.0021 Score=49.79 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=19.2
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
...+|+|+|++||||||+. .++.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 3458999999999999999 5554
No 311
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.92 E-value=0.0022 Score=46.67 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999 5544
No 312
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.91 E-value=0.0024 Score=56.25 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=21.8
Q ss_pred ccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 55 GRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 55 ~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+..+.+++|+||+|+|||||+ .+..
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 35566779999999999999999 4443
No 313
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.89 E-value=0.0026 Score=46.52 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhhhc--ccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
.+.++|.||+|+|||+|+ +....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999 54443
No 314
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.88 E-value=0.0024 Score=45.85 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999 6543
No 315
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.87 E-value=0.0024 Score=46.98 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999 6554
No 316
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.87 E-value=0.0028 Score=46.15 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999 5543
No 317
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.86 E-value=0.0023 Score=46.40 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ +...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999 5543
No 318
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.85 E-value=0.0025 Score=47.75 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999 6554
No 319
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.84 E-value=0.0026 Score=46.70 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999 5543
No 320
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.84 E-value=0.0022 Score=61.25 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=22.1
Q ss_pred CCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088 45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
+.|+|..+ +.+++++|.|+||||||||+
T Consensus 36 Lkni~v~i-----P~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 36 LRSVDLDL-----PRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CCSEEEEE-----ESSSEEEEEESTTSSHHHHH
T ss_pred cCceeeec-----cCCCEEEEECCCCCcHHHHH
Confidence 45555444 45569999999999999999
No 321
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.83 E-value=0.003 Score=45.56 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=15.0
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
-|+|+|++|||||||+
T Consensus 4 ki~ivG~~~~GKSsli 19 (169)
T 3q85_A 4 KVMLVGESGVGKSTLA 19 (169)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3899999999999999
No 322
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.81 E-value=0.0031 Score=51.64 Aligned_cols=19 Identities=21% Similarity=0.006 Sum_probs=16.7
Q ss_pred EEEEcCCCCChhhhc-cccc
Q psy18088 63 ILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 63 ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.|.||+|+||||++ .+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 899999999999999 5544
No 323
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.81 E-value=0.0023 Score=61.02 Aligned_cols=28 Identities=21% Similarity=0.094 Sum_probs=22.1
Q ss_pred CCCCCCCcccccccCCcEEEEEcCCCCChhhhc
Q psy18088 45 SGNPDSGIRSGRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 45 ~~~~~~~v~~~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
+.|+|..+ +.+++++|.|+||||||||+
T Consensus 34 Lkni~v~i-----P~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 34 LKNIDVEI-----PRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp CCSEEEEE-----ETTSEEEEEESTTSSHHHHH
T ss_pred CCceeeec-----cCCcEEEEECCCCCCHHHHH
Confidence 44555444 45569999999999999999
No 324
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.81 E-value=0.0025 Score=46.92 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999 6554
No 325
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.78 E-value=0.0037 Score=47.29 Aligned_cols=17 Identities=24% Similarity=0.090 Sum_probs=16.1
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
+.++|.||+|+|||+|+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 58999999999999999
No 326
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.78 E-value=0.0026 Score=46.13 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.6
Q ss_pred EEEEEcCCCCChhhhc--ccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~ 80 (166)
-|+|+|++|||||||+ ++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999 553
No 327
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.77 E-value=0.0032 Score=51.31 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=18.9
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.++.+.|.||+|+|||+|+ .+..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 4558999999999999999 4443
No 328
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.76 E-value=0.0031 Score=49.53 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCCChhhhc--cccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVL 83 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~ 83 (166)
+++|+|.|+.||||||+. |...++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 568999999999999999 444443
No 329
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.74 E-value=0.0039 Score=46.85 Aligned_cols=17 Identities=29% Similarity=0.200 Sum_probs=15.9
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
+.++|.||+|+|||||+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47999999999999999
No 330
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.74 E-value=0.0035 Score=46.20 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChhhhc--ccccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
-|+|+|++|||||||+ ++...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 6899999999999999 65553
No 331
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.72 E-value=0.0026 Score=48.76 Aligned_cols=21 Identities=19% Similarity=0.053 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+|+|+|++||||||+. .++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999 5554
No 332
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.71 E-value=0.003 Score=46.99 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999 5543
No 333
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.71 E-value=0.0033 Score=47.97 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCChhhhc--cccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
+.++|+|++|||||||+ |+..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999 6655
No 334
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.70 E-value=0.0033 Score=51.79 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
.|+|+|.+|||||||+ |+..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999 6654
No 335
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.69 E-value=0.0034 Score=52.73 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=19.1
Q ss_pred CcEEEEEcCCCCChhhhc--cccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
++-++|+|+||+||||++ |+..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 568999999999999999 6653
No 336
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0032 Score=45.90 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999 5543
No 337
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.67 E-value=0.0032 Score=46.64 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999 5543
No 338
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.67 E-value=0.0036 Score=45.99 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=9.3
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999 5543
No 339
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.67 E-value=0.0032 Score=47.03 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999 5543
No 340
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.0054 Score=46.83 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999 5543
No 341
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.65 E-value=0.006 Score=52.42 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=31.5
Q ss_pred cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC--ccCCcceeecCHHHH
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG--EVDGKAYHFVTRADM 115 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g--e~~G~~y~fvs~~~f 115 (166)
.-|+|+|.+|||||||+ |+.... ......+.||+..... +.+|..+.++|.+.+
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~ 233 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 233 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT-EEEC---------CCEEEEETTEEEEETTHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc-eeecCCCCceeeeeEEEEEECCeEEEEEECCCc
Confidence 47899999999999999 665432 2345566778766443 246767777776654
No 342
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.65 E-value=0.0033 Score=45.92 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999 5543
No 343
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.65 E-value=0.0041 Score=47.06 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=15.3
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
-|+|+|++|||||||+
T Consensus 25 ki~vvG~~~vGKSsLi 40 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLA 40 (195)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999999
No 344
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.65 E-value=0.0034 Score=55.83 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=19.0
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+..++|+||+|+|||||+ .+..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 558999999999999999 5554
No 345
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.65 E-value=0.0031 Score=46.31 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999 5543
No 346
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.65 E-value=0.004 Score=44.70 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=16.5
Q ss_pred EEEEcCCCCChhhhc--cccc
Q psy18088 63 ILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 63 ivLiGPSGsGKSTL~--Li~~ 81 (166)
|+|+|++|||||||+ ++..
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999 5543
No 347
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.64 E-value=0.004 Score=45.94 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999 6644
No 348
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.64 E-value=0.0041 Score=48.59 Aligned_cols=22 Identities=23% Similarity=0.027 Sum_probs=18.0
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.+.|.||+|+|||+|+ .+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 447999999999999999 4443
No 349
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.64 E-value=0.0038 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.043 Sum_probs=18.5
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.+.|.||+|+|||||+ .+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 458999999999999999 4443
No 350
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.63 E-value=0.0034 Score=45.78 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999 5543
No 351
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.62 E-value=0.0041 Score=44.84 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ +...
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999 5443
No 352
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.61 E-value=0.0047 Score=48.32 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=16.2
Q ss_pred CcEEEEEcCCCCChhhhc
Q psy18088 60 FACILHVDFAMFGKTSFL 77 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~ 77 (166)
++.++|+||+||||||++
T Consensus 76 g~~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQV 93 (235)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCEEEEEeCCCCCcHHhH
Confidence 458999999999999977
No 353
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.60 E-value=0.0043 Score=46.08 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhhhc--cccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
..-|+|+|++|||||||+ ++..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999 6554
No 354
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.60 E-value=0.0045 Score=46.02 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChhhhc--ccccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
-|+|+|++|||||||+ ++...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 5899999999999999 66543
No 355
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.59 E-value=0.0024 Score=51.29 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999 5544
No 356
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.58 E-value=0.0034 Score=46.51 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999 5543
No 357
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.57 E-value=0.0041 Score=47.62 Aligned_cols=21 Identities=14% Similarity=0.157 Sum_probs=18.2
Q ss_pred cEEEEEcCCCCChhhhc--cccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
..|+|+|++|||||||+ ++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999 6655
No 358
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.57 E-value=0.0037 Score=45.91 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999 5543
No 359
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.56 E-value=0.0047 Score=46.89 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999 5554
No 360
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.56 E-value=0.0038 Score=46.75 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999 5543
No 361
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.55 E-value=0.0059 Score=52.14 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=24.6
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE 101 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge 101 (166)
-++|+|.+|||||||+ |.... ......+.||+.|..|.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~ 43 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGV 43 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEE
Confidence 6899999999999999 55432 12234455677776664
No 362
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.55 E-value=0.0041 Score=46.63 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999 5544
No 363
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.54 E-value=0.0036 Score=45.85 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=16.4
Q ss_pred EEEEEcCCCCChhhhc--cc
Q psy18088 62 CILHVDFAMFGKTSFL--FL 79 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li 79 (166)
-|+|+|++|||||||+ ++
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 5899999999999999 65
No 364
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.54 E-value=0.0045 Score=49.23 Aligned_cols=23 Identities=26% Similarity=-0.022 Sum_probs=18.6
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.++.+.|.||+|+|||+|+ .+..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 3457999999999999999 4443
No 365
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.53 E-value=0.0045 Score=53.21 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=26.2
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHHH
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRADM 115 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~f 115 (166)
.|+|+|.+|||||||+ |+..... .....+.+||....+. .+|..+.+++-..+
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~ 61 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCC
Confidence 6999999999999999 6554321 2344556677654443 34556666655443
No 366
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.53 E-value=0.0045 Score=46.34 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.8
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999 6544
No 367
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.53 E-value=0.0035 Score=54.22 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=24.4
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCcc--CCcceeecC
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEV--DGKAYHFVT 111 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~--~G~~y~fvs 111 (166)
.|+|+|.+|||||||+ |+..... .....+.+||....+.+ ++..+..++
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liD 77 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLID 77 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEEC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEE
Confidence 7999999999999999 5544221 22334456665443332 344444444
No 368
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.51 E-value=0.0056 Score=50.29 Aligned_cols=23 Identities=22% Similarity=-0.041 Sum_probs=18.7
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+++++|+||+|+||||+. .++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3558999999999999999 4443
No 369
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.50 E-value=0.0051 Score=46.69 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999 6643
No 370
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.49 E-value=0.0041 Score=46.07 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999 5543
No 371
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.49 E-value=0.0042 Score=46.15 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999 5543
No 372
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.48 E-value=0.0044 Score=46.01 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999 5543
No 373
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.48 E-value=0.0055 Score=46.05 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999 5543
No 374
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.47 E-value=0.0042 Score=46.39 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999 6543
No 375
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.45 E-value=0.0018 Score=49.63 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++.+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999 4544
No 376
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.45 E-value=0.0051 Score=44.94 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.5
Q ss_pred EEEEEcCCCCChhhhc--ccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~ 80 (166)
-|+|+|++|||||||+ ++.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999 553
No 377
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.0078 Score=44.36 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999 5544
No 378
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.44 E-value=0.0033 Score=45.97 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999 6554
No 379
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.43 E-value=0.0042 Score=46.41 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999 5543
No 380
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.43 E-value=0.0043 Score=46.08 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999 5543
No 381
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.42 E-value=0.0044 Score=46.17 Aligned_cols=20 Identities=20% Similarity=0.266 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999 5543
No 382
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.41 E-value=0.0045 Score=49.54 Aligned_cols=20 Identities=20% Similarity=0.224 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999 5543
No 383
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.41 E-value=0.0054 Score=52.19 Aligned_cols=27 Identities=15% Similarity=-0.002 Sum_probs=22.1
Q ss_pred ccccCCcEEEEEcCCCCChhhhc--cccc
Q psy18088 55 GRIHFFACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 55 ~~~~~~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
|-+..++++.|.||+|||||||+ ++..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45667779999999999999999 4443
No 384
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.41 E-value=0.0049 Score=48.08 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCChhhhc-ccc-ccccceeeeEEeecCCCC
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLR-TVLDRFGFSVSHTTRGPR 98 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~-~~~~~f~~~v~~TTR~p~ 98 (166)
|+++|+|=|+-||||||+. ++. .+.. +.. ...||.|.
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~--~~~-v~~~~eP~ 39 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYD-VIMTREPG 39 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTT--TSC-EEEEESST
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHC--CCC-EEEeeCCC
Confidence 4679999999999999999 444 3432 222 24567774
No 385
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.40 E-value=0.0049 Score=53.04 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecC
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVT 111 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs 111 (166)
.|+|+|.++||||||+ |+.... .+....+.+||....+. .+|..+..+|
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~D 55 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVD 55 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCeEEEEEE
Confidence 6899999999999999 665432 23445566777665553 3555554444
No 386
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0047 Score=46.20 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999 5543
No 387
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.38 E-value=0.0044 Score=46.65 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=16.7
Q ss_pred EEEEEcCCCCChhhhc--ccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~ 80 (166)
-|+|+|++|||||||+ |..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999 554
No 388
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.37 E-value=0.0068 Score=46.77 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999 6554
No 389
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.37 E-value=0.0047 Score=46.62 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=16.8
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999 6543
No 390
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.36 E-value=0.0049 Score=45.69 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++.+
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999 6644
No 391
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.34 E-value=0.0048 Score=46.69 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999 5543
No 392
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.33 E-value=0.0058 Score=46.10 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=16.3
Q ss_pred EEEEEcCCCCChhhhc--cc
Q psy18088 62 CILHVDFAMFGKTSFL--FL 79 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li 79 (166)
-|+|+|++|||||||+ ++
T Consensus 8 kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 4899999999999999 55
No 393
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.32 E-value=0.0056 Score=46.00 Aligned_cols=20 Identities=35% Similarity=0.369 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999 5543
No 394
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.0044 Score=46.17 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5899999999999999 6554
No 395
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.32 E-value=0.0041 Score=50.76 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=17.6
Q ss_pred CcEEEEEcCCCCChhhhc-ccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
+..+.|.||+|+|||||+ .+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 347999999999999999 443
No 396
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.32 E-value=0.0058 Score=51.25 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=18.9
Q ss_pred CcEEEEEcCCCCChhhhc--cccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
++-++|.|+||+||||++ |+..
T Consensus 147 g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 568999999999999999 6653
No 397
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.31 E-value=0.0047 Score=46.48 Aligned_cols=20 Identities=25% Similarity=0.482 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999 6554
No 398
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.31 E-value=0.0051 Score=45.81 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999 6543
No 399
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.31 E-value=0.0054 Score=45.86 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.8
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999 5543
No 400
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.30 E-value=0.0061 Score=44.45 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999 5543
No 401
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.29 E-value=0.0057 Score=49.91 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhhhc--cccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
++.++|.||+|+|||||+ +...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999 5443
No 402
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.29 E-value=0.0052 Score=46.19 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999 6544
No 403
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.28 E-value=0.0039 Score=51.38 Aligned_cols=29 Identities=24% Similarity=0.238 Sum_probs=20.5
Q ss_pred CCcccccccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 50 SGIRSGRIHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 50 ~~v~~~~~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..++.++++ . ++|.||+|+||||++ .+..
T Consensus 39 ~~i~~g~~~--~-~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 39 KFVDEGKLP--H-LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp HHHHTTCCC--C-EEEECSSSSSHHHHHHHHHH
T ss_pred HHHhcCCCc--e-EEEECCCCCCHHHHHHHHHH
Confidence 344555531 1 899999999999999 4443
No 404
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.28 E-value=0.0052 Score=46.18 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999 5543
No 405
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.27 E-value=0.0053 Score=45.75 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999 5544
No 406
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.26 E-value=0.0032 Score=53.73 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=15.0
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
.++|+|++|||||||+
T Consensus 3 ~v~IVG~pnvGKSTL~ 18 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLF 18 (368)
T ss_dssp SEEEECCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3889999999999999
No 407
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.24 E-value=0.0039 Score=46.50 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=4.3
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999 5544
No 408
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.22 E-value=0.0061 Score=46.21 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999 5543
No 409
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.22 E-value=0.0048 Score=45.59 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999 6544
No 410
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.19 E-value=0.007 Score=50.50 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=16.7
Q ss_pred CcEEEEEcCCCCChhhhc
Q psy18088 60 FACILHVDFAMFGKTSFL 77 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~ 77 (166)
+..++|+|++|+|||||+
T Consensus 56 ~~~i~i~G~~g~GKSTl~ 73 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFL 73 (341)
T ss_dssp SEEEEEEECTTSCHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 458999999999999999
No 411
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.17 E-value=0.0061 Score=46.59 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=16.8
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999 5543
No 412
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.14 E-value=0.0062 Score=48.03 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999 5543
No 413
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.13 E-value=0.0062 Score=45.10 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ +...
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999 5443
No 414
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.13 E-value=0.0066 Score=44.08 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.|.||+|+|||+++ .+..
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999 5543
No 415
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.13 E-value=0.0069 Score=48.59 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.|.||+|+|||+++ .+..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 7999999999999999 4443
No 416
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.12 E-value=0.0083 Score=49.27 Aligned_cols=21 Identities=19% Similarity=-0.005 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChhhhc--ccccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
.++|.||+|+|||||+ +....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999 44443
No 417
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.12 E-value=0.006 Score=46.20 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999 5543
No 418
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.11 E-value=0.0086 Score=54.26 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=25.1
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG 100 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g 100 (166)
.|+|+|++++|||||+ |+.... .| .++.|||....|
T Consensus 40 ~VaivG~pnvGKStLiN~L~g~~~-~~--~~~~tt~~~T~g 77 (592)
T 1f5n_A 40 VVAIVGLYRTGKSYLMNKLAGKKK-GF--SLGSTVQSHTKG 77 (592)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS-CS--CCCCSSSCCCCS
T ss_pred EEEEECCCCCCHHHHHHhHcCCCC-cc--ccCCCCCCceeE
Confidence 7899999999999999 655432 12 455666555443
No 419
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.0062 Score=45.29 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999 5543
No 420
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.10 E-value=0.006 Score=46.64 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999 5543
No 421
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.09 E-value=0.0071 Score=48.51 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|.+|+|||||+ |...
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999 5544
No 422
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.08 E-value=0.0075 Score=48.77 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCC
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGP 97 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p 97 (166)
.++|+|.+|+|||||+ |...... -...++.||+..
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~ 137 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGI 137 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTCC-----------CCS
T ss_pred heEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccce
Confidence 6899999999999999 5544321 234556677654
No 423
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.07 E-value=0.0055 Score=48.89 Aligned_cols=20 Identities=20% Similarity=0.286 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|.+|+|||||+ |+..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999 6554
No 424
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=95.07 E-value=0.0026 Score=56.06 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=33.3
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecC
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVT 111 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs 111 (166)
-|+|+|++++|||||+ |+.... .+....+.|||.+..+. ++|..+.+++
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~D 297 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVD 297 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEE
T ss_pred EEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEE
Confidence 6999999999999999 655432 24455667888776553 3555544443
No 425
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.02 E-value=0.0075 Score=56.16 Aligned_cols=25 Identities=20% Similarity=-0.013 Sum_probs=20.5
Q ss_pred ccCCcEEEEEcCCCCChhhhc-cccc
Q psy18088 57 IHFFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 57 ~~~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+..++.++|+||||||||||+ .++.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 345668999999999999999 5554
No 426
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.00 E-value=0.0084 Score=44.61 Aligned_cols=16 Identities=25% Similarity=0.112 Sum_probs=15.1
Q ss_pred EEEEEcCCCCChhhhc
Q psy18088 62 CILHVDFAMFGKTSFL 77 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~ 77 (166)
.++|.||+|+|||+|+
T Consensus 40 ~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 40 HLLFSGPPGTGKTATA 55 (226)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999999
No 427
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.98 E-value=0.011 Score=49.36 Aligned_cols=23 Identities=26% Similarity=0.124 Sum_probs=20.1
Q ss_pred ccccCCcEEEEEcCCCCChhhhc
Q psy18088 55 GRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 55 ~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
|-+..+.++.|.||+|+|||||+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHH
Confidence 44566779999999999999999
No 428
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.97 E-value=0.0076 Score=52.60 Aligned_cols=19 Identities=26% Similarity=0.128 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCCChhhhc
Q psy18088 59 FFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~ 77 (166)
.+++++++||+||||||++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SSEEEEECCCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3679999999999999999
No 429
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.95 E-value=0.0097 Score=50.14 Aligned_cols=23 Identities=22% Similarity=0.017 Sum_probs=20.3
Q ss_pred ccccCCcEEEEEcCCCCChhhhc
Q psy18088 55 GRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 55 ~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
|-+..++++.|.||+|+|||||+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHH
Confidence 45667779999999999999998
No 430
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.94 E-value=0.0058 Score=54.82 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.++|+||+|+|||||+ .+.+
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHhc
Confidence 48999999999999999 5544
No 431
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.94 E-value=0.0085 Score=48.79 Aligned_cols=22 Identities=9% Similarity=-0.289 Sum_probs=17.9
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.+.|.||+|+|||+|+ .++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 457888899999999999 4443
No 432
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.92 E-value=0.011 Score=48.23 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCC
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPR 98 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~ 98 (166)
-.++|+|.+|+|||||+ |+.... .-....+.|||.+.
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~ 159 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQ 159 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC-C------------C
T ss_pred ceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeE
Confidence 36899999999999999 554432 23345566777553
No 433
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.91 E-value=0.0087 Score=48.03 Aligned_cols=18 Identities=17% Similarity=0.001 Sum_probs=16.3
Q ss_pred CcEEEEEcCCCCChhhhc
Q psy18088 60 FACILHVDFAMFGKTSFL 77 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~ 77 (166)
+..++|.||+|+|||+|+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 347999999999999999
No 434
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.90 E-value=0.011 Score=45.20 Aligned_cols=22 Identities=23% Similarity=0.108 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhhhc--cccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
+++++|.||.|+||||++ ++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 558999999999999998 5543
No 435
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.90 E-value=0.0075 Score=50.85 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=14.5
Q ss_pred EEEEcCCCCChhhhc
Q psy18088 63 ILHVDFAMFGKTSFL 77 (166)
Q Consensus 63 ivLiGPSGsGKSTL~ 77 (166)
|+|+|++|+|||||+
T Consensus 40 I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 40 LMVVGESGLGKSTLI 54 (361)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 799999999999999
No 436
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.86 E-value=0.009 Score=44.80 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ +...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5999999999999998 5443
No 437
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.0029 Score=54.28 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=34.9
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHH
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRA 113 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~ 113 (166)
-|+|+|.+.||||||+ |....+ .....+.||+.|..|. .+|..+.+++-+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~--~v~~~pftT~~~~~g~~~~~~~~i~l~D~p 127 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTES--EAAEYEFTTLVTVPGVIRYKGAKIQMLDLP 127 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCC--CGGGTCSSCCCEEEEEEEETTEEEEEEECG
T ss_pred eEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeeeeeEEEEeCCcEEEEEeCC
Confidence 6999999999999999 655433 2345567888887774 355555555433
No 438
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.85 E-value=0.012 Score=49.15 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCChhhhc--ccccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
..++|+|++|||||||+ |....
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 37999999999999999 55543
No 439
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.84 E-value=0.013 Score=52.24 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.8
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.+|+|.|++||||||+. .+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~ 394 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILAT 394 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHH
Confidence 568999999999999999 5544
No 440
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.0084 Score=45.98 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999 5543
No 441
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.83 E-value=0.011 Score=49.81 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=16.1
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
.+.+|+||+|+|||||+
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 48999999999999999
No 442
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.82 E-value=0.0081 Score=47.75 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=18.7
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..+.+.|.||+|+|||+|+ .+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 3458999999999999999 4443
No 443
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.81 E-value=0.0084 Score=45.95 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999 5543
No 444
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.81 E-value=0.01 Score=47.95 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
.|+|+|++|||||||+ |+..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHHCC
Confidence 6999999999999999 6554
No 445
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.79 E-value=0.0082 Score=45.34 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|+|||||+ ++..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999 5543
No 446
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.77 E-value=0.0083 Score=51.29 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.++|+||+||||||+. +++.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 5999999999999999 4443
No 447
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.77 E-value=0.0085 Score=45.30 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999 5543
No 448
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.76 E-value=0.0024 Score=55.99 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=31.3
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC--ccCCcceeecCHHHHH
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG--EVDGKAYHFVTRADME 116 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g--e~~G~~y~fvs~~~f~ 116 (166)
.|+|+|++|+|||||+ |+.... .+....+.|||..... .++|..+.+++...+.
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~ 283 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSDR-AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR 283 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHB-SCCSCCTTCCHHHHHHEEEETTEEEEECC-----
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCeeEEEEEEEEEECCEEEEEEECCccc
Confidence 5999999999999999 655422 1233334455543222 2467777777766653
No 449
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.72 E-value=0.0094 Score=43.22 Aligned_cols=20 Identities=5% Similarity=-0.071 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.|.||+|+|||+++ .+..
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCC
T ss_pred cEEEECCCCccHHHHHHHHHH
Confidence 6889999999999999 5554
No 450
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.67 E-value=0.0092 Score=47.53 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=15.6
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
..+.|.||+|+|||+|+
T Consensus 51 ~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46889999999999999
No 451
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.67 E-value=0.0086 Score=51.36 Aligned_cols=36 Identities=22% Similarity=0.037 Sum_probs=18.2
Q ss_pred EEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCC
Q psy18088 63 ILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPG 100 (166)
Q Consensus 63 ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~g 100 (166)
|+|+|.++||||||+ |.... ......+.||+.|..|
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g 40 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVG 40 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC----------------CCEE
T ss_pred EEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceE
Confidence 799999999999999 55442 1222334466655544
No 452
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.67 E-value=0.0096 Score=48.64 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCChhhhc--ccccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTV 82 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~ 82 (166)
++.++|.||+|+|||||+ +....
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 457999999999999999 54443
No 453
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.67 E-value=0.011 Score=44.83 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.7
Q ss_pred EEEEEcCCCCChhhhc--ccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~ 80 (166)
-|+|+|++|||||||+ ++.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999 553
No 454
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.012 Score=45.81 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=16.7
Q ss_pred EEEEEcCCCCChhhhc--ccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~ 80 (166)
-|+|+|++|||||||+ ++.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999 553
No 455
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.62 E-value=0.014 Score=44.91 Aligned_cols=21 Identities=24% Similarity=0.089 Sum_probs=18.3
Q ss_pred ccCCcEEEEEcCCCCChhhhc
Q psy18088 57 IHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 57 ~~~~~~ivLiGPSGsGKSTL~ 77 (166)
+..+.+++|.|++|+|||+|+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHH
Confidence 445569999999999999998
No 456
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.62 E-value=0.011 Score=48.85 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=16.7
Q ss_pred CcEEEEEcCCCCChhhhc
Q psy18088 60 FACILHVDFAMFGKTSFL 77 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~ 77 (166)
+++++++||+|+||||++
T Consensus 98 ~~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp SEEEEEECSSCSSTTHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 568999999999999999
No 457
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.62 E-value=0.011 Score=53.14 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=19.1
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.+|+|.|+|||||||+. .++.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 3568999999999999999 5543
No 458
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.60 E-value=0.0093 Score=49.61 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+.++|.||+|+|||+++ .+..
T Consensus 52 ~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999 5554
No 459
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.60 E-value=0.011 Score=44.40 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.7
Q ss_pred EEEEEcCCCCChhhhc--ccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~ 80 (166)
-|+|+|++|||||||+ +..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999 554
No 460
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.58 E-value=0.013 Score=48.19 Aligned_cols=18 Identities=22% Similarity=0.095 Sum_probs=16.7
Q ss_pred CcEEEEEcCCCCChhhhc
Q psy18088 60 FACILHVDFAMFGKTSFL 77 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~ 77 (166)
++.+.|.||+|+|||+|+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 458999999999999999
No 461
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.57 E-value=0.012 Score=48.41 Aligned_cols=18 Identities=17% Similarity=0.050 Sum_probs=16.8
Q ss_pred CcEEEEEcCCCCChhhhc
Q psy18088 60 FACILHVDFAMFGKTSFL 77 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~ 77 (166)
++.++|.||+|+|||+|+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999999
No 462
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.59 E-value=0.0062 Score=45.85 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ ++..
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4899999999999999 5543
No 463
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.56 E-value=0.014 Score=48.16 Aligned_cols=23 Identities=22% Similarity=0.024 Sum_probs=19.7
Q ss_pred ccccCCcEEEEEcCCCCChhhhc
Q psy18088 55 GRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 55 ~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
|-+..+.++.|.||+|+|||||+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHH
Confidence 34556679999999999999999
No 464
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.54 E-value=0.011 Score=53.86 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=19.3
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++.+|+|+|++||||||+. .++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 4668999999999999999 4443
No 465
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.54 E-value=0.0089 Score=51.66 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+..++|.||+|+|||||+ .+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999 4443
No 466
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.51 E-value=0.013 Score=51.00 Aligned_cols=23 Identities=26% Similarity=-0.021 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
+|..++|+||||+|||||+ ++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHH
Confidence 3559999999999999999 6554
No 467
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.47 E-value=0.0049 Score=48.69 Aligned_cols=19 Identities=26% Similarity=0.132 Sum_probs=16.2
Q ss_pred EEEEEcCCCCChhhhc-ccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~ 80 (166)
.+.|.||+|+|||+|+ .+.
T Consensus 46 ~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 4789999999999999 444
No 468
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.45 E-value=0.016 Score=46.68 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCChhhhc--cccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
+.++|.||.|+|||||+ +...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 48999999999999999 5544
No 469
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.39 E-value=0.014 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=18.3
Q ss_pred CCcEEEEEcCCCCChhhhc-ccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~ 80 (166)
.++-+.|.||+|+|||+|+ .+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHH
Confidence 3468999999999999999 443
No 470
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.38 E-value=0.012 Score=46.91 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|+|||||+ |+..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999 6544
No 471
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.36 E-value=0.012 Score=52.45 Aligned_cols=23 Identities=9% Similarity=-0.107 Sum_probs=19.1
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+..|+|+|+||||||||. .++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHH
Confidence 4568999999999999999 4443
No 472
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.35 E-value=0.014 Score=46.83 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=17.3
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|++|||||||+ |...
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999 6543
No 473
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.32 E-value=0.013 Score=50.90 Aligned_cols=19 Identities=21% Similarity=-0.029 Sum_probs=17.1
Q ss_pred CCcEEEEEcCCCCChhhhc
Q psy18088 59 FFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~ 77 (166)
.+++++|+||+||||||+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3568999999999999999
No 474
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.31 E-value=0.018 Score=48.46 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=32.8
Q ss_pred EEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCcc--CC-cceeecCHHHH
Q psy18088 62 CILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEV--DG-KAYHFVTRADM 115 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge~--~G-~~y~fvs~~~f 115 (166)
-|+|+|.++||||||+ |....+. ....+.||..|..+.+ ++ ..+.+++.+-+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~--i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~ 216 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGL 216 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCc--cccCCccccCceEEEEEeCCCceEEEecCCCC
Confidence 3889999999999999 6555331 1223356766665532 32 45666666554
No 475
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.29 E-value=0.018 Score=47.28 Aligned_cols=22 Identities=18% Similarity=0.079 Sum_probs=18.2
Q ss_pred CcEEEEEcCCCCChhhhc--cccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
++.+.|.||+|+|||||+ +...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999 4443
No 476
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.26 E-value=0.016 Score=46.66 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCChhhhc--cccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
+.++|.||.|+|||||+ +...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999 5544
No 477
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.19 E-value=0.014 Score=49.00 Aligned_cols=21 Identities=14% Similarity=-0.070 Sum_probs=17.2
Q ss_pred cEEEEEcCCCCChhhhc--cccc
Q psy18088 61 ACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
.-++|+||||+||||++ ++..
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999 4443
No 478
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.18 E-value=0.019 Score=46.97 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=19.8
Q ss_pred ccccCCcEEEEEcCCCCChhhhc
Q psy18088 55 GRIHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 55 ~~~~~~~~ivLiGPSGsGKSTL~ 77 (166)
|-+..+.++.|.||+|+|||+|+
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHH
Confidence 34556779999999999999999
No 479
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.16 E-value=0.019 Score=46.82 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=17.0
Q ss_pred cEEEEEcCCCCChhhhc-ccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLR 80 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~ 80 (166)
..+.|.||+|+|||+|+ .+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 36899999999999999 444
No 480
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.15 E-value=0.013 Score=46.68 Aligned_cols=20 Identities=35% Similarity=0.301 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|.+|||||||+ |+..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred eEEEEeCCCCCHHHHHHHHHCC
Confidence 6999999999999999 6554
No 481
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.15 E-value=0.021 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCCChhhhc--cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
.+++|+++||+||||||+. |...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 3679999999999999999 5543
No 482
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.14 E-value=0.021 Score=49.31 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=18.2
Q ss_pred ccCCcEEEEEcCCCCChhhhc
Q psy18088 57 IHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 57 ~~~~~~ivLiGPSGsGKSTL~ 77 (166)
+..+.+++|.|++|+|||||+
T Consensus 200 l~~G~liiI~G~pG~GKTtl~ 220 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFA 220 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 344559999999999999999
No 483
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.13 E-value=0.016 Score=44.84 Aligned_cols=21 Identities=14% Similarity=-0.241 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCChhhhc-cccc
Q psy18088 61 ACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+|+|.||.||||||+. .++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 48999999999999999 5544
No 484
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.13 E-value=0.022 Score=46.87 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=18.1
Q ss_pred ccCCcEEEEEcCCCCChhhhc
Q psy18088 57 IHFFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 57 ~~~~~~ivLiGPSGsGKSTL~ 77 (166)
+..+.+++|.|++|+|||||+
T Consensus 65 l~~G~l~li~G~pG~GKTtl~ 85 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFA 85 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHH
Confidence 344559999999999999999
No 485
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.12 E-value=0.019 Score=48.03 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhhhc--cccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
...|+|+|++|+|||||+ |...
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 448999999999999999 5543
No 486
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.08 E-value=0.012 Score=45.46 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=23.7
Q ss_pred EEEEEcCCCCChhhhc-cccc-cccceeeeEEeecCCCC
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT-VLDRFGFSVSHTTRGPR 98 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~-~~~~f~~~v~~TTR~p~ 98 (166)
+|+|=|+-||||||.. ++.. +.. -+..+ .+||.|.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~-~g~~v-~~treP~ 38 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKV-ILKREPG 38 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-TTCCE-EEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCcE-EEEECCC
Confidence 7899999999999999 5544 332 22222 4567774
No 487
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.03 E-value=0.026 Score=48.69 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=32.5
Q ss_pred CcEEEEEcCCCCChhhhc--cccccccceeeeEEeecCCCCCCc--cCCcceeecCHHH
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRTVLDRFGFSVSHTTRGPRPGE--VDGKAYHFVTRAD 114 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~~~~~f~~~v~~TTR~p~~ge--~~G~~y~fvs~~~ 114 (166)
..-++|+|.+|+|||||+ ++.... .+....+.||+...... .+|..+.++|-+.
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G 252 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAG 252 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGG
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCC
Confidence 446899999999999999 654432 34455667777765443 4666677776554
No 488
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.02 E-value=0.018 Score=48.00 Aligned_cols=23 Identities=22% Similarity=-0.044 Sum_probs=18.9
Q ss_pred CCcEEEEEcCCCCChhhhc-cccc
Q psy18088 59 FFACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
..+.+.|.||+|+|||+|+ .+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999 4443
No 489
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.01 E-value=0.018 Score=47.20 Aligned_cols=22 Identities=23% Similarity=0.069 Sum_probs=18.1
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+-+.|.||+|+|||+|+ .+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999 4443
No 490
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.01 E-value=0.021 Score=50.54 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
-++|+||+|+|||||+ .+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 4999999999999999 5554
No 491
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.00 E-value=0.019 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.048 Sum_probs=18.1
Q ss_pred CcEEEEEcCCCCChhhhc-cccc
Q psy18088 60 FACILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~-Li~~ 81 (166)
++-+.|+||+|+|||+|+ .+..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999 5544
No 492
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.98 E-value=0.015 Score=48.48 Aligned_cols=20 Identities=30% Similarity=0.167 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChhhhc-cccc
Q psy18088 62 CILHVDFAMFGKTSFL-FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~-Li~~ 81 (166)
.+.|.||+|+|||+|+ .+..
T Consensus 74 ~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999 4443
No 493
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.98 E-value=0.017 Score=46.55 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhhhc--cccc
Q psy18088 62 CILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 62 ~ivLiGPSGsGKSTL~--Li~~ 81 (166)
-|+|+|.+|||||||+ |+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999 6544
No 494
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.95 E-value=0.017 Score=45.19 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=16.6
Q ss_pred EEEEcCCCCChhhhc--cccc
Q psy18088 63 ILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 63 ivLiGPSGsGKSTL~--Li~~ 81 (166)
|+|+|.+|||||+|+ ++.+
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 889999999999999 5543
No 495
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.82 E-value=0.019 Score=49.91 Aligned_cols=22 Identities=32% Similarity=0.232 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhhhc--cccc
Q psy18088 60 FACILHVDFAMFGKTSFL--FLRT 81 (166)
Q Consensus 60 ~~~ivLiGPSGsGKSTL~--Li~~ 81 (166)
++.|+|+|++||||||+. |...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999 5543
No 496
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.76 E-value=0.02 Score=45.20 Aligned_cols=17 Identities=18% Similarity=0.038 Sum_probs=15.7
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
..+.|.||+|+|||+|+
T Consensus 30 ~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 36899999999999999
No 497
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.72 E-value=0.018 Score=46.73 Aligned_cols=15 Identities=33% Similarity=0.253 Sum_probs=14.6
Q ss_pred EEEEcCCCCChhhhc
Q psy18088 63 ILHVDFAMFGKTSFL 77 (166)
Q Consensus 63 ivLiGPSGsGKSTL~ 77 (166)
+.|.||+|+||||++
T Consensus 61 ~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTI 75 (353)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999999
No 498
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.70 E-value=0.017 Score=46.50 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=15.7
Q ss_pred cEEEEEcCCCCChhhhc
Q psy18088 61 ACILHVDFAMFGKTSFL 77 (166)
Q Consensus 61 ~~ivLiGPSGsGKSTL~ 77 (166)
+.++|.||+|+|||+|+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 36899999999999999
No 499
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.70 E-value=0.028 Score=49.32 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=17.5
Q ss_pred CCcEEEEEcCCCCChhhhc
Q psy18088 59 FFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~ 77 (166)
..++++|.||.|+|||||+
T Consensus 146 ~~~~v~I~G~~GiGKTtLa 164 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLA 164 (591)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 3579999999999999999
No 500
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.68 E-value=0.023 Score=50.38 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=17.0
Q ss_pred CCcEEEEEcCCCCChhhhc
Q psy18088 59 FFACILHVDFAMFGKTSFL 77 (166)
Q Consensus 59 ~~~~ivLiGPSGsGKSTL~ 77 (166)
.+.+|+++|++||||||+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia 52 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYIS 52 (520)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3458999999999999999
Done!