RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18088
(166 letters)
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 107 bits (269), Expect = 2e-30
Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 6/71 (8%)
Query: 72 GKTSFLFLRTVLDR----FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEH 127
GK++ L + +L+ FGFSVSHTTR PRPGEVDG YHFV++ + E I GEFLE
Sbjct: 11 GKSTLL--KRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEW 68
Query: 128 AEFAANLYGTS 138
AEF N YGTS
Sbjct: 69 AEFHGNYYGTS 79
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 108 bits (272), Expect = 2e-30
Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 72 GKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEF 130
GK++ + L FS+S TTR PRPGEVDG Y FV++ + EE I AGEFLE AE
Sbjct: 12 GKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIKAGEFLEWAEV 71
Query: 131 AANLYGTS 138
N YGT
Sbjct: 72 HGNYYGTP 79
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 105 bits (266), Expect = 4e-29
Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 72 GKTSFLFLRTVLDR---FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHA 128
GK++ + + +L+R SVS TTR PRPGEVDG Y FV++ + EE I GEFLE A
Sbjct: 17 GKSTLV--KALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWA 74
Query: 129 EFAANLYGTS 138
E N YGT
Sbjct: 75 EVFGNYYGTP 84
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 96.8 bits (242), Expect = 9e-26
Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 72 GKTSFLFLRTVLDRFG--FSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
GK++ + + +L+ FSVS TTR PRPGEVDG Y FVT + EE I EFLE AE
Sbjct: 16 GKSTLV--KALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAE 73
Query: 130 FAANLYGTS 138
+ N YGTS
Sbjct: 74 YHGNYYGTS 82
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 96.3 bits (240), Expect = 1e-25
Identities = 38/56 (67%), Positives = 47/56 (83%)
Query: 84 DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTSQ 139
++FG+SVSHTTR PRPGEVDGK YHFV++ +ME I+A EFLE+AEF N YGTS+
Sbjct: 28 EKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEYAEFNGNYYGTSK 83
>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues. Active enzymes
catalyze ATP-dependent phosphorylation of GMP to GDP.
Structure resembles that of adenylate kinase. So-called
membrane-associated guanylate kinase homologues (MAGUKs)
do not possess guanylate kinase activities; instead at
least some possess protein-binding functions.
Length = 174
Score = 93.5 bits (233), Expect = 1e-24
Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 72 GKTSFLFLRTVL-----DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLE 126
GK + L L D F VSHTTR PRPGEV+G YHFV++ + E+ I +G FLE
Sbjct: 4 GKGT---LLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLE 60
Query: 127 HAEFAANLYGTS 138
E+ N YGTS
Sbjct: 61 WGEYEGNYYGTS 72
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 84.5 bits (209), Expect = 7e-20
Identities = 33/55 (60%), Positives = 36/55 (65%)
Query: 84 DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
FGFSVSHTTR PR E DG YHF R+ ME+ I G+FLE A NLYGTS
Sbjct: 161 SMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTS 215
>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional.
Length = 206
Score = 69.4 bits (170), Expect = 3e-15
Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 81 TVLDR-------FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAAN 133
VL R F F V+ TTR RPGE+DG YHFVT + E I+ E LE AE N
Sbjct: 28 AVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGN 87
Query: 134 LYG 136
YG
Sbjct: 88 YYG 90
>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional.
Length = 186
Score = 65.8 bits (160), Expect = 6e-14
Identities = 29/52 (55%), Positives = 36/52 (69%)
Query: 86 FGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGT 137
F FS+S TTR PRPG+ +GK Y F+T + ++ IA GEFLE AE N YGT
Sbjct: 31 FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82
>gnl|CDD|238987 cd02029, PRK_like, Phosphoribulokinase-like (PRK-like) is a family
of proteins similar to phosphoribulokinase (PRK), the
enzyme involved in the Benson-Calvin cycle in
chloroplasts or photosynthetic prokaryotes. PRK
catalyzes the phosphorylation of D-ribulose 5-phosphate
to form D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 277
Score = 34.8 bits (80), Expect = 0.012
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 96 GPRPGEVDGKAYHFVTRADMEERIA----AGEFLEHAEFAANLYGT--------SQCGRQ 143
G P V+G ++H R +M+ IA AG H ANL+ + GR
Sbjct: 27 GIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTYGETGRG 86
Query: 144 NGRNYL 149
R YL
Sbjct: 87 RSRYYL 92
>gnl|CDD|237970 PRK15453, PRK15453, phosphoribulokinase; Provisional.
Length = 290
Score = 31.7 bits (73), Expect = 0.11
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
Query: 98 RPGEVDGKAYHFVTRADMEERIA----AGEFLEHAEFAANL----------YGTSQCGRQ 143
V+G ++H TR +M+ IA AG H ANL YG + G+
Sbjct: 35 NAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLFREYGETGTGKT 94
Query: 144 NGRNYL 149
R YL
Sbjct: 95 --RKYL 98
>gnl|CDD|193067 pfam12536, DUF3734, Patatin phospholipase. This domain family is
found in bacteria, and is approximately 110 amino acids
in length. The family is found in association with
pfam01734. There are two completely conserved residues
(F and G) that may be functionally important. The
proteins in this family are frequently annotated as
patatin family phospholipases however there is little
accompanying literature to confirm this.
Length = 108
Score = 28.8 bits (65), Expect = 0.62
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 89 SVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEF-----LEHAE 129
++ H +P E K Y F +R+ + ER AAG L H
Sbjct: 54 TIVHLIYRAKPYEGHSKDYDF-SRSSIRERWAAGYEDARRALAHPP 98
>gnl|CDD|151212 pfam10726, DUF2518, Protein of function (DUF2518). This family is
conserved in Cyanobacteria. Several members are
annotated as the protein Ycf51. The function is not
known.
Length = 145
Score = 27.2 bits (61), Expect = 3.3
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 68 FAMFGKTSFLFLRTVLDRFGFSVSHTTRGPRPGEV 102
F + G TSF L T + FS+S+T R G V
Sbjct: 37 FRLVGVTSFTLLLTA-SCWAFSLSYTPRVVVEGAV 70
>gnl|CDD|162787 TIGR02253, CTE7, HAD superfamily (subfamily IA) hydrolase,
TIGR02253. This family of sequences from archaea and
metazoans includes the human uncharacterized protein
CTE7. Pyrococcus species appear to have three different
forms of this enzyme, so it is unclear whether all
members of this family have the same function. This
family is a member of the haloacid dehalogenase (HAD)
superfamily of hydrolases which are characterized by
three conserved sequence motifs. By virtue of an alpha
helical domain in-between the first and second conserved
motif, this family is a member of subfamily IA
(TIGR01549).
Length = 221
Score = 27.0 bits (60), Expect = 5.1
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 10/88 (11%)
Query: 9 ISHQCCQMTVTKQSYIRENAGITVRILL-----NYRTCISASGNPDSG----IRSGRIHF 59
++ K +Y+R G L+ YR I G P R G F
Sbjct: 78 VAAFVYAYHKLKFAYLRVYPG-VRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDF 136
Query: 60 FACILHVDFAMFGKTSFLFLRTVLDRFG 87
F ++ + K L R G
Sbjct: 137 FDAVITSEEEGVEKPHPKIFYAALKRLG 164
>gnl|CDD|226463 COG3954, PrkB, Phosphoribulokinase [Energy production and
conversion].
Length = 289
Score = 26.0 bits (57), Expect = 10.0
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 12/64 (18%)
Query: 98 RPGEVDGKAYHFVTRADMEERI----AAGEFLEHAEFAANLYGT--------SQCGRQNG 145
EV+G ++H TR +M+ I AG + + AN +G Q G+
Sbjct: 35 HAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIEYGQSGKGRS 94
Query: 146 RNYL 149
R YL
Sbjct: 95 RKYL 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.138 0.430
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,460,099
Number of extensions: 763540
Number of successful extensions: 691
Number of sequences better than 10.0: 1
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 20
Length of query: 166
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 76
Effective length of database: 6,945,742
Effective search space: 527876392
Effective search space used: 527876392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (24.9 bits)