RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18088
(166 letters)
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 118 bits (297), Expect = 3e-34
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 84 DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
++F + V +TTR PR E DGK YHF++ +M I+A EFLE + N++GT
Sbjct: 45 EKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTK 99
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 117 bits (296), Expect = 4e-34
Identities = 43/70 (61%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
GK++ L + FGFSVSHTTR PRPGE DGK Y+FVTR M+ IAAG+F+EHAE
Sbjct: 16 GKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAE 75
Query: 130 FAANLYGTSQ 139
F+ NLYGTS+
Sbjct: 76 FSGNLYGTSK 85
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 117 bits (295), Expect = 4e-34
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 84 DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
DRF + + HTTR P+ E +GK Y+FV+ M + I+ E+LE+ +YGT
Sbjct: 31 DRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTK 85
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 116 bits (294), Expect = 7e-34
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
GK++ L D FGFSVS TTR PR GEV+GK Y+FV+ + + I EF+E A+
Sbjct: 13 GKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ 72
Query: 130 FAANLYGTSQ 139
F+ N YG++
Sbjct: 73 FSGNYYGSTV 82
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 114 bits (289), Expect = 5e-33
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
GK + + L RF FS+S TTR R E +G Y+FV + D E ++ G+FLE +
Sbjct: 24 GKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDK 83
Query: 130 FAANLYGTS 138
+A N YGT
Sbjct: 84 YANNFYGTL 92
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 115 bits (290), Expect = 6e-33
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
GK + + L + F FSVS TTR R E +G Y+F+ + E+++ +FLE+
Sbjct: 35 GKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDN 94
Query: 130 FAANLYGTS 138
+A N YGT
Sbjct: 95 YANNFYGTL 103
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 114 bits (288), Expect = 1e-32
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
GK + + F +S+S TTR PR GE DG Y+F +R E+ I G+ LE+AE
Sbjct: 20 GKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAE 79
Query: 130 FAANLYGTSQ 139
+ N YGT
Sbjct: 80 YVGNYYGTPL 89
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 114 bits (288), Expect = 1e-32
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
GK + + +S+S TTR R GEVDG Y F TR E I +F+E+AE
Sbjct: 18 GKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77
Query: 130 FAANLYGTSQ 139
+ N YGT
Sbjct: 78 YVGNYYGTPV 87
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 108 bits (271), Expect = 4e-30
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 72 GKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEF 130
GK++ + LR + FSVS TTR PRPGEVDG YHF+ ++ I GE LE AE
Sbjct: 32 GKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEI 91
Query: 131 AANLY--GTSQ 139
L+ GT
Sbjct: 92 HGGLHRSGTLA 102
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 108 bits (271), Expect = 4e-30
Identities = 35/71 (49%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 72 GKTSF---LFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHA 128
GK+S L L SVSHTTR PRPGEV G+ Y FV + +E I+ FLEHA
Sbjct: 28 GKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 87
Query: 129 EFAANLYGTSQ 139
E N YGTS+
Sbjct: 88 EVFGNYYGTSR 98
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 106 bits (267), Expect = 1e-29
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 72 GKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEF 130
GKTS + L L S+SHTTR RPG+ +G Y F+ + + G FLEHA
Sbjct: 19 GKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATI 78
Query: 131 AANLYGTSQ 139
YGT +
Sbjct: 79 YERHYGTEK 87
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 106 bits (266), Expect = 3e-29
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
GKT+ L + SVS TTR R GE +GK Y+FV R + + GE +EHAE
Sbjct: 39 GKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAE 98
Query: 130 FAANLYGTSQ 139
N YG +
Sbjct: 99 VFGNFYGVPR 108
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 102 bits (257), Expect = 2e-27
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 84 DRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYGTS 138
D+FG V HTTR R E+DG+ YHFV+ R ME+ I A +F+E ++ ++LYGTS
Sbjct: 128 DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTS 183
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 101 bits (253), Expect = 7e-27
Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 84 DRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYGTS 138
D+FG V HTTR R EVDG+ YHFV+ R ME I F+E ++ NLYGTS
Sbjct: 123 DKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTS 178
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 85.3 bits (210), Expect = 4e-20
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 84 DRFGFSVSHTTRGPRPGEVDGKAYHFVT-RADMEERIAAGEFLEHAEFAANLYGTS 138
D+FG V HTTR R E+DG+ YHFV+ R ME+ I A +F+E ++ ++LYGTS
Sbjct: 554 DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTS 609
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 48.7 bits (115), Expect = 2e-07
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 11/57 (19%)
Query: 84 DRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANL--YGTS 138
RF +S T R + + + + +E + ++L +
Sbjct: 171 HRFEGRISIT-RVTADISL--------AKRSVLNNPSKHAIIERSNTRSSLAEVQSE 218
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.033
Identities = 23/166 (13%), Positives = 48/166 (28%), Gaps = 44/166 (26%)
Query: 20 KQSY-----IRENAGITVRIL------LNYRT-------CISAS---GNPDSGIRSGRIH 58
++ + +A I +L + S P S I
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IP 429
Query: 59 FFACILHVDFAMFGKTSFLFLRTVLDRFGFSVSHTTRGPRPGEVDG-----KAYHFVTRA 113
++++ + + + R+++D + + + P +D +H
Sbjct: 430 ----SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL-KNI 484
Query: 114 DMEERIAAGE-------FLE----HAEFAANLYGTSQCGRQNGRNY 148
+ ER+ FLE H A N G+ Q + Y
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR
{Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Length = 171
Score = 28.5 bits (64), Expect = 0.84
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 97 PRPGEVDGKAYHFVTRADMEERIAAGEF 124
P ++ ++T + RIAAGE
Sbjct: 129 FNPNDIS--GGEWLTPEHLLARIAAGEA 154
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics,
structural genomics consortium; HET: SAH; 1.70A {Homo
sapiens} SCOP: c.66.1.15
Length = 263
Score = 27.0 bits (59), Expect = 2.8
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 10/85 (11%)
Query: 37 NYRTCISASGNPDSGIRSGRIHFFACILHVDFAMFGKTSF-------LFLRTVLDRFGFS 89
+ +A N S ++ G L + M GK F + + GF
Sbjct: 172 SLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFD 231
Query: 90 VSHTTRGPRPGEV---DGKAYHFVT 111
+ P+ V +
Sbjct: 232 IEQLLHSPQSYSVTNAANNGVCCIV 256
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 2.8
Identities = 23/208 (11%), Positives = 42/208 (20%), Gaps = 101/208 (48%)
Query: 33 RILLNYRTCISASGNPDS---------GIRSGRIHFFACILHVDFAMFG----------- 72
++ NY T + P + G A FG
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI--------FGGQGNTDDYFEE 172
Query: 73 -----KTSFLFLRTVLDRF--------------------GFSVSH--TTRGPRPGEVDGK 105
+T + + ++ G ++ P +
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK---- 228
Query: 106 AY-----------------HFVTRADMEERIAAGEFLEHAEFAANLYGTSQCGRQNGRNY 148
Y H+V A G E + L G + +
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTA-----KLLG--FTPGELRSYLKGATGHSQG----- 276
Query: 149 LI-------------FNTLAAKCLPTVF 163
L+ F K + +F
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLF 304
Score = 27.3 bits (60), Expect = 3.5
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 18/52 (34%)
Query: 70 MFGK----TSFLFLRTVLDR--------FGFSVSHTTRGPRPGEVDGKAYHF 109
M G TS + V +R +GFS+ P HF
Sbjct: 1631 M-GMDLYKTSKAA-QDVWNRADNHFKDTYGFSILDIVIN-NPVN---LTIHF 1676
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Length = 184
Score = 25.5 bits (56), Expect = 7.7
Identities = 9/63 (14%), Positives = 22/63 (34%)
Query: 79 LRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
L+ +DR+ ++ ++ K + + +I ++ E + G S
Sbjct: 90 LKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMS 149
Query: 139 QCG 141
G
Sbjct: 150 FKG 152
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 25.7 bits (57), Expect = 9.6
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 28 AGITVRILLNYRTCISASGNPDSG 51
AGI + LN R + A+GNP G
Sbjct: 425 AGIVAK--LNARAAVIAAGNPKFG 446
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.138 0.430
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,590,596
Number of extensions: 148591
Number of successful extensions: 378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 33
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.8 bits)