RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18088
(166 letters)
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 58.7 bits (141), Expect = 5e-12
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
G+ + DRF + + HTTR P+ E +GK Y+FV+ M + I+ E+LE+
Sbjct: 15 GRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGS 74
Query: 130 FAANLYGTSQCGRQNGRNY 148
+YGT +
Sbjct: 75 HEDAMYGTKLETIRKIHEQ 93
>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 51.0 bits (121), Expect = 5e-09
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 84 DRFGFSVSHTTRGPRPGEVDGKAYHF-VTRADMEERIAAGEFLEHAEFAANLYGTSQC 140
D+FG V HTTR R E+DG+ YHF +R ME+ I A +F+E ++ ++LYGTS
Sbjct: 32 DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQ 89
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 50.6 bits (120), Expect = 7e-09
Identities = 35/76 (46%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 72 GKTSF---LFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHA 128
GK+S L L SVSHTTR PRPGEV G+ Y FV + +E I+ FLEHA
Sbjct: 14 GKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 73
Query: 129 EFAANLYGTSQCGRQN 144
E N YGTS+ +
Sbjct: 74 EVFGNYYGTSREAIEQ 89
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 46.9 bits (110), Expect = 1e-07
Identities = 43/79 (54%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
GK++ L + FGFSVSHTTR PRPGE DGK Y+FVTR M+ IAAG+F+EHAE
Sbjct: 12 GKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAE 71
Query: 130 FAANLYGTSQCGRQNGRNY 148
F+ NLYGTS+ + +
Sbjct: 72 FSGNLYGTSKEAVRAVQAM 90
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 44.2 bits (103), Expect = 1e-06
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 72 GKTSFL--FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAE 129
GK++ L D FGFSVS TTR PR GEV+GK Y+FV+ + + I EF+E A+
Sbjct: 13 GKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ 72
Query: 130 FAANLYGTSQC 140
F+ N YG++
Sbjct: 73 FSGNYYGSTVA 83
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 33.0 bits (74), Expect = 0.009
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 72 GKTSFL-FLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEF 130
GK++ + LR + FSVS TTR PRPGEVDG YHF+ ++ I GE LE AE
Sbjct: 14 GKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEI 73
Query: 131 AANLYGTS-------QCGRQNGRNYLIFNTLAAKCLPTVFPFA 166
L+ + + + A+ + P A
Sbjct: 74 HGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA 116
>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079
{Deinococcus radiodurans str. R1 (Deinococcus
radiodurans R1) [TaxId: 243230]}
Length = 162
Score = 27.1 bits (59), Expect = 0.77
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 97 PRPGEVDGKAYHFVTRADMEERIAAGEF 124
P ++ ++T + RIAAGE
Sbjct: 123 FNPNDIS--GGEWLTPEHLLARIAAGEA 148
>d1iu4a_ d.3.1.8 (A:) Microbial transglutaminase
{Streptoverticillium mobaraense [TaxId: 35621]}
Length = 331
Score = 26.2 bits (57), Expect = 2.0
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 9/34 (26%)
Query: 97 PRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEF 130
PR GE TRA+ E R+A F E F
Sbjct: 99 PRSGE---------TRAEFEGRVAKESFDEEKGF 123
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 25.3 bits (55), Expect = 3.7
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 95 RGPRPGEVDGKAYHFVTRA---DMEERIAAGEFLEHAEFAAN 133
P V A ++R + +R E LEH AN
Sbjct: 220 EFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITAN 261
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 25.4 bits (55), Expect = 4.2
Identities = 7/81 (8%), Positives = 21/81 (25%), Gaps = 5/81 (6%)
Query: 57 IHFFACILHVDFAMFGKTSFLFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRA--- 113
+ +L + G+ + + T ++D + +
Sbjct: 189 VWSCGIVLT--AMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVE 246
Query: 114 DMEERIAAGEFLEHAEFAANL 134
+ RI + + + L
Sbjct: 247 NPSARITIPDIKKDRWYNKPL 267
>d1qzga_ b.40.4.3 (A:) Protection of telomeres protein 1, Pot1
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 170
Score = 24.9 bits (54), Expect = 4.6
Identities = 1/22 (4%), Positives = 8/22 (36%)
Query: 13 CCQMTVTKQSYIRENAGITVRI 34
+ + + + G+ + +
Sbjct: 62 VTTVYLWDPTCDTSSIGLQIHL 83
>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of
formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 179
Score = 24.8 bits (54), Expect = 5.2
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 91 SHTTRGPRPGEVDGKAYHFVTRADMEERIAAGEFLEHAEFAANLYGTS 138
H PR G +D + V M+E + + + A G
Sbjct: 76 RHHGEHPRMGALDVCPFIPVRGVTMDECVRCAQAF--GQRLAEELGVP 121
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 270
Score = 25.0 bits (54), Expect = 5.5
Identities = 6/74 (8%), Positives = 19/74 (25%), Gaps = 5/74 (6%)
Query: 57 IHFFACILHVDFAMFGKTSFLFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRA--- 113
++ F + + + + + S + +
Sbjct: 195 VYAFGMCML--EMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQ 252
Query: 114 DMEERIAAGEFLEH 127
+ +ER + + L H
Sbjct: 253 NKDERYSIKDLLNH 266
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 24.6 bits (53), Expect = 6.7
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 60 FACILHVDFAMFGKTSFLFLRTVLDRFGFSVSHTTRGPRPGEVDGKAYHFVTRA---DME 116
+ + G+ +L + + + + T P ++ F+ R D+E
Sbjct: 202 LGIMAI--EMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVE 259
Query: 117 ERIAAGEFLEH 127
+R +A E L+H
Sbjct: 260 KRGSAKELLQH 270
>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein
kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 24.6 bits (53), Expect = 7.9
Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 97 PRPGEVDGKAYHFVTRA---DMEERIAAGEFLEH 127
+P F+ + +++ R + L+H
Sbjct: 236 AQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQH 269
>d2q78a1 d.38.1.7 (A:1-130) Uncharacterized protein TM0581
{Thermotoga maritima [TaxId: 2336]}
Length = 130
Score = 23.6 bits (51), Expect = 9.3
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 101 EVDGKAYHF-VTRADMEERIAAGEF 124
V G F +E+I EF
Sbjct: 90 GVVGNRVKFRGIVMSGDEKILEAEF 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.138 0.430
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 628,868
Number of extensions: 27547
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 18
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (22.8 bits)