BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18090
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ACJ|A Chain A, Crystal Structure Of The Tldc Domain Of Oxidation
Resistance Protein 2 From Zebrafish
Length = 167
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Query: 230 WRLLFSSQFQGESFTRLMACAINQ-GPLLVLVKDDKANIFGAYASTNLTLCPKFYGDQNS 288
W L FS+ G S L +Q P+L+++KD IFGA AS + FYG +
Sbjct: 29 WNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQIFGALASEPFKVSEGFYGTGET 88
Query: 289 FLFTLKPDMKVFNSSGFNENFIYLNSNQQTLPNGLGFGGQFEYWGLWIDSEYGQGECNKT 348
FLFT P+ + + +G +N ++ + + L FGG +GLW+D + G N +
Sbjct: 89 FLFTFYPEFEAYKWTG--DNLFFIKGDMDS----LAFGGGSGEFGLWLDGDLYHGR-NHS 141
Query: 349 CSTFKDYQMLSHDKHFKIMHIELW 372
C TF + MLS + F + IE+W
Sbjct: 142 CKTFGN-PMLSMKEDFFVQDIEIW 164
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 67/190 (35%), Gaps = 30/190 (15%)
Query: 108 LINYVQALLNSCLFIYQSRDDKELWSSLNIDSDKGSLIVYANYL--CMGDCNNEITFDSL 165
++Q + N L I + D+K LW L +D G + A + C D N F L
Sbjct: 132 FTKWLQDVFNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDL 191
Query: 166 QKWLSTT---HEIAYLHKYV----LSHMFGFNTSQRIIPTPVYNPSFTMSILDYSHIMFL 218
++ + + K+V + +FGF S I I F
Sbjct: 192 DYXGXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCI-----------------GKISFP 234
Query: 219 NLNLMPEFQKQWRLLFSSQFQGESFTRLMACAINQGPLLVLVKDDKANI-FGAYASTNLT 277
+ P F + +F + + L+ CAI+Q P +D I + A + T
Sbjct: 235 AIQAAPSFSNSFPQIFRDRTDIQC---LIPCAIDQDPYFRXTRDVAPRIGYPKPALLHST 291
Query: 278 LCPKFYGDQN 287
P G Q
Sbjct: 292 FFPALQGAQT 301
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 67/187 (35%), Gaps = 30/187 (16%)
Query: 111 YVQALLNSCLFIYQSRDDKELWSSLNIDSDKGSLIVYANYL--CMGDCNNEITFDSLQKW 168
++Q + N L I + D+K LW L +D G + A + C D N F L
Sbjct: 182 WLQDVFNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYX 241
Query: 169 LSTT---HEIAYLHKYV----LSHMFGFNTSQRIIPTPVYNPSFTMSILDYSHIMFLNLN 221
++ + + K+V + +FGF S I I F +
Sbjct: 242 GXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCI-----------------GKISFPAIQ 284
Query: 222 LMPEFQKQWRLLFSSQFQGESFTRLMACAINQGPLLVLVKDDKANI-FGAYASTNLTLCP 280
P F + +F + + L+ CAI+Q P +D I + A + T P
Sbjct: 285 AAPSFSNSFPQIFRDRTDIQC---LIPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFP 341
Query: 281 KFYGDQN 287
G Q
Sbjct: 342 ALQGAQT 348
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 67/187 (35%), Gaps = 30/187 (16%)
Query: 111 YVQALLNSCLFIYQSRDDKELWSSLNIDSDKGSLIVYANYL--CMGDCNNEITFDSLQKW 168
++Q + N L I + D+K LW L +D G + A + C D N F L
Sbjct: 182 WLQDVFNVPLVIQXTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYX 241
Query: 169 LSTT---HEIAYLHKYV----LSHMFGFNTSQRIIPTPVYNPSFTMSILDYSHIMFLNLN 221
++ + + K+V + +FGF S I I F +
Sbjct: 242 GXSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCI-----------------GKISFPAIQ 284
Query: 222 LMPEFQKQWRLLFSSQFQGESFTRLMACAINQGPLLVLVKDDKANI-FGAYASTNLTLCP 280
P F + +F + + L+ CAI+Q P +D I + A + T P
Sbjct: 285 AAPSFSNSFPQIFRDRTDIQC---LIPCAIDQDPYFRXTRDVAPRIGYPKPALLHSTFFP 341
Query: 281 KFYGDQN 287
G Q
Sbjct: 342 ALQGAQT 348
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 30/187 (16%)
Query: 111 YVQALLNSCLFIYQSRDDKELWSSLNIDSDKGSLIVYANYL--CMGDCNNEITFDSLQKW 168
++Q + N L I + D+K LW L +D + A + C D N F L
Sbjct: 182 WLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYM 241
Query: 169 LSTT---HEIAYLHKYV----LSHMFGFNTSQRIIPTPVYNPSFTMSILDYSHIMFLNLN 221
++ + + K+V + +FGF S I I F +
Sbjct: 242 GMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCI-----------------GKISFPAIQ 284
Query: 222 LMPEFQKQWRLLFSSQFQGESFTRLMACAINQGPLLVLVKDDKANI-FGAYASTNLTLCP 280
P F + +F + + L+ CAI+Q P + +D I + A + T P
Sbjct: 285 AAPSFSNSFPQIFRDRTDIQC---LIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 341
Query: 281 KFYGDQN 287
G Q
Sbjct: 342 ALQGAQT 348
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 30/187 (16%)
Query: 111 YVQALLNSCLFIYQSRDDKELWSSLNIDSDKGSLIVYANYL--CMGDCNNEITFDSLQKW 168
++Q + N L I + D+K LW L +D + A + C D N F L
Sbjct: 101 WLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYM 160
Query: 169 LSTT---HEIAYLHKYV----LSHMFGFNTSQRIIPTPVYNPSFTMSILDYSHIMFLNLN 221
++ + + K+V + +FGF S I I F +
Sbjct: 161 GMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCI-----------------GKISFPAIQ 203
Query: 222 LMPEFQKQWRLLFSSQFQGESFTRLMACAINQGPLLVLVKDDKANI-FGAYASTNLTLCP 280
P F + +F + + L+ CAI+Q P + +D I + A + T P
Sbjct: 204 AAPSFSNSFPQIFRDRTDIQC---LIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 260
Query: 281 KFYGDQN 287
G Q
Sbjct: 261 ALQGAQT 267
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 30/187 (16%)
Query: 111 YVQALLNSCLFIYQSRDDKELWSSLNIDSDKGSLIVYANYL--CMGDCNNEITFDSLQKW 168
++Q + N L I + D+K LW L +D + A + C D N F L
Sbjct: 89 WLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYM 148
Query: 169 LSTT---HEIAYLHKYV----LSHMFGFNTSQRIIPTPVYNPSFTMSILDYSHIMFLNLN 221
++ + + K+V + +FGF S I I F +
Sbjct: 149 GMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCI-----------------GKISFPAIQ 191
Query: 222 LMPEFQKQWRLLFSSQFQGESFTRLMACAINQGPLLVLVKDDKANI-FGAYASTNLTLCP 280
P F + +F + + L+ CAI+Q P + +D I + A + T P
Sbjct: 192 AAPSFSNSFPQIFRDRTDIQC---LIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 248
Query: 281 KFYGDQN 287
G Q
Sbjct: 249 ALQGAQT 255
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 30/187 (16%)
Query: 111 YVQALLNSCLFIYQSRDDKELWSSLNIDSDKGSLIVYANYL--CMGDCNNEITFDSLQKW 168
++Q + N L I + D+K LW L +D + A + C D N F L
Sbjct: 89 WLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYM 148
Query: 169 LSTT---HEIAYLHKYV----LSHMFGFNTSQRIIPTPVYNPSFTMSILDYSHIMFLNLN 221
++ + + K+V + +FGF S I I F +
Sbjct: 149 GMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCI-----------------GKISFPAIQ 191
Query: 222 LMPEFQKQWRLLFSSQFQGESFTRLMACAINQGPLLVLVKDDKANI-FGAYASTNLTLCP 280
P F + +F + + L+ CAI+Q P + +D I + A + T P
Sbjct: 192 AAPSFSNSFPQIFRDRTDIQC---LIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 248
Query: 281 KFYGDQN 287
G Q
Sbjct: 249 ALQGAQT 255
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 30/187 (16%)
Query: 111 YVQALLNSCLFIYQSRDDKELWSSLNIDSDKGSLIVYANYL--CMGDCNNEITFDSLQKW 168
++Q + N L I + D+K LW L +D + A + C D N F L
Sbjct: 89 WLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYM 148
Query: 169 LSTT---HEIAYLHKYV----LSHMFGFNTSQRIIPTPVYNPSFTMSILDYSHIMFLNLN 221
++ + + K+V + +FGF S I I F +
Sbjct: 149 GMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCI-----------------GKISFPAIQ 191
Query: 222 LMPEFQKQWRLLFSSQFQGESFTRLMACAINQGPLLVLVKDDKANI-FGAYASTNLTLCP 280
P F + +F + + L+ CAI+Q P + +D I + A + T P
Sbjct: 192 AAPSFSNSFPQIFRDRTDIQC---LIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 248
Query: 281 KFYGDQN 287
G Q
Sbjct: 249 ALQGAQT 255
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 190 NTSQRIIPTPVYNPSFTMSILDYSHIMF-LNLNLMPEFQKQWRLLFSSQFQGESFTRLM- 247
N SQ I+P I + H+M NL+L+P+++K+ +L ++F ++ L+
Sbjct: 766 NLSQHIVPK-FKAHVIKKKIEELYHLMSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLK 824
Query: 248 ---ACAINQGPLLVLVKDDKANIFGAY 271
AC IN G LVL + N G++
Sbjct: 825 GRVACEINSGYELVLTELILDNFLGSF 851
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 151 LCMGDCNNEITFDSLQKWLSTTHEIA 176
L + D N+ +FD++Q WL+ HE A
Sbjct: 88 LLLYDVTNKASFDNIQAWLTEIHEYA 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,619,989
Number of Sequences: 62578
Number of extensions: 604958
Number of successful extensions: 1037
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1033
Number of HSP's gapped (non-prelim): 13
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)