RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18090
         (421 letters)



>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS)
           {Escherichia coli, gene lysU [TaxId: 562]}
          Length = 143

 Score = 28.5 bits (63), Expect = 0.80
 Identities = 6/59 (10%), Positives = 14/59 (23%), Gaps = 1/59 (1%)

Query: 332 WGLWIDSEYGQGECNKTCSTFKDYQMLSHDKHFKIMHIELWGVGIPPPTAEEKGERSVL 390
              ++  +   G                ++  FK   +             + GE S+ 
Sbjct: 71  KASFVTLQDVGGRIQ-LYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIH 128


>d1hfxa_ d.2.1.2 (A:) alpha-Lactalbumin {Guinea pig (Cavia
           porcellus) [TaxId: 10141]}
          Length = 123

 Score = 28.3 bits (63), Expect = 0.89
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 299 VFNSSGFNENFIYLNSNQQTLPNGLGFGGQFEYWGLWIDSEYGQGECNKTCSTFKD 354
           +F+ SG++   I    N      GL F    + +     +   +  C+ +C    D
Sbjct: 30  IFHISGYDTQAI--VKNSDHKEYGL-FQINDKDFCESSTTVQSRNICDISCDKLLD 82


>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 332

 Score = 28.4 bits (63), Expect = 1.8
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 25  PEDVKKIKSLTNGKDVLTKVDVFELWSMEIKD---SLINFYLKYYFPDKTEKI--DLSTF 79
           PE +K +  L    D L + + F +    +      L     K  F ++ E I  ++ + 
Sbjct: 56  PEQLKMLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSV 115

Query: 80  ISLYYELDGSNIDRKVEILLCFIGSYGDLINYVQALLNSCLF 121
            +   EL  S        LL      G+ +N       +  F
Sbjct: 116 TAACEELRKS---ENFSSLLELTLLVGNYMNAGSRNAGAFGF 154


>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
           virus [TaxId: 12110]}
          Length = 476

 Score = 27.2 bits (60), Expect = 4.1
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 19  LSRKIKPEDVKKIKSLTNGKDVLTKVDVFELWSMEIKDSLINFYLKYYFPDKTEKIDLST 78
           L R  +  ++     ++ G D++   D ++L    +K    +        DK++K  +  
Sbjct: 319 LRRHYEGVELDTYTMISYGDDIVVASD-YDLDFEALKPHFKSLGQTITPADKSDKGFVLG 377


>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic
           disease virus [TaxId: 11976]}
          Length = 497

 Score = 26.9 bits (59), Expect = 5.4
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 13/97 (13%)

Query: 15  LKKNLSRKIKPEDVKK-IKSLTNGKDVLTKV-DVFELWSMEIKDSLINFYLKYYFPDKTE 72
            K      +   ++ +     T G D +  +  +       I ++L ++ L     DKTE
Sbjct: 326 YKSCAEIGLHCSNLYEDAPFYTYGDDGVYAMTPMMVSLLPAIIENLRDYGLSPTAADKTE 385

Query: 73  KIDLS-----TFISLYYELDGS------NIDRKVEIL 98
            ID+      +F+   +EL         +    +  L
Sbjct: 386 FIDVCPLNKISFLKRTFELTDIGWVSKLDKSSILRQL 422


>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 229

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 326 GGQFEYWGLWIDSEYGQGECNK-TCSTFKDYQMLSHDKHFKIMHIELWGVGIPPP 379
           GG   Y  L    E  + + +  T    +       +  F+  +I    + + PP
Sbjct: 156 GGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIRTEVMALVPP 210


>d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain
           {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 187

 Score = 25.8 bits (57), Expect = 7.5
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 25  PEDVKKIKSLTNGKD-------VLTKVDVFEL-----WSMEIKDSLINFYLKYYFPDK 70
           P D +  + L NGK        VL   + FEL        EIK+ + N Y + Y P++
Sbjct: 52  PYDKQVKQVLANGKKGDLNVGMVLILPEGFELAPPDRVPAEIKEKVGNLYYQPYSPEQ 109


>d1b9oa_ d.2.1.2 (A:) alpha-Lactalbumin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 123

 Score = 25.2 bits (55), Expect = 9.7
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 299 VFNSSGFNENFIYLNSNQQTLPNGLGFGGQFEYWGLWIDSEYGQGECNKTCSTFKD 354
           +F++SG++   I    N ++   GL F    + W         +  C+ +C  F D
Sbjct: 30  MFHTSGYDTQAI--VENDESTEYGL-FQISNKLWCKSSQVPQSRNICDISCDKFLD 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,580,593
Number of extensions: 75395
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 14
Length of query: 421
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,199,356
Effective search space: 399385548
Effective search space used: 399385548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)