BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18091
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 200/322 (62%), Positives = 249/322 (77%), Gaps = 5/322 (1%)
Query: 52 RVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNF 111
R W ++WNP GT+++SCG D+ IR+WG E G+ + K++LS+GHQRT+R+ AWSPCGN+
Sbjct: 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTE--GDSWICKSVLSEGHQRTVRKVAWSPCGNY 75
Query: 112 IASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVG 171
+ASASFDATT +W K FEC TLEGHENEVKSV W+ +G LATCSRDKSVWVWEV
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135
Query: 172 EEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSH 231
EEDEYEC +V+N+H QDVK V +HP +LASASYDDTVKL++E+ E DW+ ATL+ H
Sbjct: 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE--EDDWVCCATLEGH 193
Query: 232 TSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGR 291
STVWSLAFD G RLA+CSDD TV+IW++Y PGN G+ +D WKC+CTLSG H R
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR 253
Query: 292 TIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWN 351
TIYDI+WC LT +ATACGDDAIR+F+E+P + D +F L H+AH+QDVNCVAWN
Sbjct: 254 TIYDIAWCQLTGALATACGDDAIRVFQEDPNS-DPQQPTFSLTAHLHQAHSQDVNCVAWN 312
Query: 352 PVVPGMLASCSDDGDVKLWQIK 373
P PG+LASCSDDG+V W+ +
Sbjct: 313 PKEPGLLASCSDDGEVAFWKYQ 334
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 128/239 (53%), Gaps = 21/239 (8%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL+GH+ V +V+W P G ++++C DK++ +W + +++ ++L + H + ++
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE-EDEYECVSVL-NSHTQDVKHVV 157
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
W P +ASAS+D T ++ + + C ATLEGHE+ V S+ + +GQ LA+CS D++
Sbjct: 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT 217
Query: 165 VWVWE------------VGEEDEYECAAVINA-HIQDVKKVRFHPFDNILASASYDDTVK 211
V +W G + ++C ++ H + + + + LA+A DD ++
Sbjct: 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIR 277
Query: 212 LFKEDK-AEADWINFATL----KSHTSTVWSLAFD-RIGSRLATCSDDATVKIWKEYKP 264
+F+ED ++ F+ ++H+ V +A++ + LA+CSDD V WK +P
Sbjct: 278 VFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 136/292 (46%), Gaps = 26/292 (8%)
Query: 47 KGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS 106
+GHQ V V+W+P G ++S D +W K + F L +GH+ ++ AW+
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ--DDFECVTTL-EGHENEVKSVAWA 114
Query: 107 PCGNFIASASFDATTAVWD-KRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSV 165
P GN +A+ S D + VW+ ++EC + L H +VK V W + + LA+ S D +V
Sbjct: 115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174
Query: 166 WVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKE---------- 215
++ EED++ C A + H V + F P LAS S D TV+++++
Sbjct: 175 KLYR-EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVA 233
Query: 216 -DKAEADWINFATLKS-HTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTP 273
++ W TL H+ T++ +A+ ++ LAT D +++++E P + PT
Sbjct: 234 CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE-DPNSDPQQPT- 291
Query: 274 DNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIF--KENPEA 323
+ L H + + ++W + +C DD F + PE
Sbjct: 292 -----FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 22/144 (15%)
Query: 233 STVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRT 292
S W LA++ G+ LA+C D ++IW + DS W C LS H RT
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGT------------EGDS-WICKSVLSEGHQRT 63
Query: 293 IYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNP 352
+ ++W + +A+A D I+K+N + F+ V T H +V VAW P
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQD-------DFECV-TTLEGHENEVKSVAWAP 115
Query: 353 VVPGMLASCSDDGDVKLWQIKLEN 376
+LA+CS D V +W++ E+
Sbjct: 116 -SGNLLATCSRDKSVWVWEVDEED 138
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 193/340 (56%), Gaps = 30/340 (8%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSD-GHQRTIRE 102
++LK ++ ++W+ ++ QG ++++ D+ I+L + + FT +L + H++ IR
Sbjct: 8 KSLKLYKEKIWSFDFS-QG-ILATGSTDRKIKLVSVKY--DDFTLIDVLDETAHKKAIRS 63
Query: 103 TAWSPCGNFIASASFDATTAVWDK-----RSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
AW P + +A+ SFD+T ++W K R+ + + A +EGHENEVK V WS +G +LA
Sbjct: 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 158 TCSRDKSVWVWEVGEE-DEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKED 216
TCSRDKSVW+WE E +EYEC +V+ H QDVK V +HP + +LAS+SYDDTV+++K+
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD- 182
Query: 217 KAEADWINFATLKSHTSTVWSLAFDRIGS--RLATCSDDATVKIWKEYKPGNSAGIPTPD 274
+ DW A L H TVWS FD+ RL + SDD+TV++WK Y + D
Sbjct: 183 -YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK-YMGDD------ED 234
Query: 275 NDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLV 334
+ W C L H R +Y+++W LIA+ D + +++E D + F
Sbjct: 235 DQQEWVCEAILPDVHKRQVYNVAWG-FNGLIASVGADGVLAVYEEV----DGEWKVFAKR 289
Query: 335 HTEHRAHNQDVNCVAWNPV-VPGMLASCSDDGDVKLWQIK 373
H + ++N V W + +LA+ DDG V W ++
Sbjct: 290 ALCHGVY--EINVVKWLELNGKTILATGGDDGIVNFWSLE 327
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 160/327 (48%), Gaps = 47/327 (14%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
QTL GH VW V+++P G I+S +DK ++LW + N + + GH ++
Sbjct: 133 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLT--GHSSSVWGV 186
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
A+SP G IASAS D T +W+ R+GQ TL GH + V+ V +S +GQ +A+ S DK
Sbjct: 187 AFSPDGQTIASASDDKTVKLWN-RNGQLL--QTLTGHSSSVRGVAFSPDGQTIASASDDK 243
Query: 164 SVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWI 223
+V +W + + H V V F P +ASAS D TVKL+ +
Sbjct: 244 TVKLWN----RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL---- 295
Query: 224 NFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVC 283
TL H+S+VW +AF G +A+ SDD TVK+W + +
Sbjct: 296 -LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----------------QHLQ 338
Query: 284 TLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQ 343
TL+GH +++ +++ IA+A D ++++ N + L+ T H+
Sbjct: 339 TLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------LLQTL-TGHSS 386
Query: 344 DVNCVAWNPVVPGMLASCSDDGDVKLW 370
V VA++P +AS SDD VKLW
Sbjct: 387 SVRGVAFSPDGQ-TIASASDDKTVKLW 412
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 110/352 (31%), Positives = 171/352 (48%), Gaps = 56/352 (15%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
QTL GH VW V+++P G I+S +DK ++LW + N + + GH ++R
Sbjct: 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLT--GHSSSVRGV 227
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
A+SP G IASAS D T +W+ R+GQ TL GH + V V + +GQ +A+ S DK
Sbjct: 228 AFSPDGQTIASASDDKTVKLWN-RNGQLL--QTLTGHSSSVNGVAFRPDGQTIASASDDK 284
Query: 164 SVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWI 223
+V +W + + H V V F P +ASAS D TVKL+ +
Sbjct: 285 TVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH---- 336
Query: 224 NFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWK------EYKPGNSAGIP----TP 273
TL H+S+VW +AF G +A+ SDD TVK+W + G+S+ + +P
Sbjct: 337 -LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 395
Query: 274 DNDSV-----------W----KCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFK 318
D ++ W + + TL+GH +++ +++ IA+A D ++++
Sbjct: 396 DGQTIASASDDKTVKLWNRNGQLLQTLTGHS-SSVWGVAFSPDDQTIASASDDKTVKLWN 454
Query: 319 ENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 370
N + L+ T H+ V VA++P +AS SDD VKLW
Sbjct: 455 RNGQ----------LLQTL-TGHSSSVRGVAFSPDGQ-TIASASDDKTVKLW 494
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 47/334 (14%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
QTL GH VW V+++P G I+S +DK ++LW + N + + GH ++R
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLT--GHSSSVRGV 104
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
A+SP G IASAS D T +W+ R+GQ TL GH + V V +S +GQ +A+ S DK
Sbjct: 105 AFSPDGQTIASASDDKTVKLWN-RNGQLL--QTLTGHSSSVWGVAFSPDGQTIASASDDK 161
Query: 164 SVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWI 223
+V +W + + H V V F P +ASAS D TVKL+ +
Sbjct: 162 TVKLW----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL---- 213
Query: 224 NFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVC 283
TL H+S+V +AF G +A+ SDD TVK+W + +
Sbjct: 214 -LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------------QLLQ 256
Query: 284 TLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQ 343
TL+GH ++ +++ IA+A D ++++ N + L+ T H+
Sbjct: 257 TLTGHS-SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ----------LLQTL-TGHSS 304
Query: 344 DVNCVAWNPVVPGMLASCSDDGDVKLWQIKLENL 377
V VA++P +AS SDD VKLW ++L
Sbjct: 305 SVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQHL 337
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 156/325 (48%), Gaps = 47/325 (14%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAW 105
L+ H V V+++P G I+S +DK ++LW + N + + GH ++ A+
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLT--GHSSSVWGVAF 65
Query: 106 SPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSV 165
SP G IASAS D T +W+ R+GQ TL GH + V+ V +S +GQ +A+ S DK+V
Sbjct: 66 SPDGQTIASASDDKTVKLWN-RNGQLL--QTLTGHSSSVRGVAFSPDGQTIASASDDKTV 122
Query: 166 WVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINF 225
+W + + H V V F P +ASAS D TVKL+ +
Sbjct: 123 KLW----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-----L 173
Query: 226 ATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTL 285
TL H+S+VW +AF G +A+ SDD TVK+W + + TL
Sbjct: 174 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----------------QLLQTL 217
Query: 286 SGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDV 345
+GH ++ +++ IA+A D ++++ N + L+ T H+ V
Sbjct: 218 TGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----------LLQTL-TGHSSSV 265
Query: 346 NCVAWNPVVPGMLASCSDDGDVKLW 370
N VA+ P +AS SDD VKLW
Sbjct: 266 NGVAFRPDGQ-TIASASDDKTVKLW 289
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 136/274 (49%), Gaps = 35/274 (12%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
QTL GH VW V+++P G I+S +DK ++LW + N + + GH ++R
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLT--GHSSSVRGV 391
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
A+SP G IASAS D T +W+ R+GQ TL GH + V V +S + Q +A+ S DK
Sbjct: 392 AFSPDGQTIASASDDKTVKLWN-RNGQLL--QTLTGHSSSVWGVAFSPDDQTIASASDDK 448
Query: 164 SVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWI 223
+V +W + + H V+ V F P +ASAS D TVKL+ +
Sbjct: 449 TVKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL---- 500
Query: 224 NFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVC 283
TL H+S+V +AF G +A+ SDD TVK+W + +
Sbjct: 501 -LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------------QLLQ 543
Query: 284 TLSGHHGRTIYDISWCHLTDLIATACGDDAIRIF 317
TL+GH +++ +++ IA+A D ++++
Sbjct: 544 TLTGHS-SSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
QTL GH V V+++P G I+S +DK ++LW + N + + GH ++
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQTLT--GHSSSVWGV 555
Query: 104 AWSPCGNFIASASFDATTAVWD 125
A+SP G IASAS D T +W+
Sbjct: 556 AFSPDGQTIASASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 35/240 (14%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+TLKGH V ++S++ G +++SC D I+LW + F T GH +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-----GHDHNVSSV 198
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
+ P G+ I SAS D T +W+ ++G C T GH V+ V +++G +A+CS D+
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 164 SVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP---FDNI-----------------LAS 203
+V VW V + EC A + H V+ + + P + +I L S
Sbjct: 257 TVRVWVVATK---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313
Query: 204 ASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYK 263
S D T+K++ + TL H + V + F G + +C+DD T+++W +YK
Sbjct: 314 GSRDKTIKMWDVSTG----MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW-DYK 368
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 41/259 (15%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAW 105
L GH+ V V ++P +++ S ED I++W E+ + T K GH ++++ ++
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-----GHTDSVQDISF 158
Query: 106 SPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSV 165
G +AS S D T +WD + FEC T+ GH++ V SV+ NG + + SRDK++
Sbjct: 159 DHSGKLLASCSADMTIKLWDFQG--FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216
Query: 166 WVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLF----KEDKAE-- 219
+WEV + Y C H + V+ VR + ++AS S D TV+++ KE KAE
Sbjct: 217 KMWEV--QTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 273
Query: 220 -----ADWINFATLKSHTSTVWSLAFD-----RIGSRLATCSDDATVKIWKEYKPGNSAG 269
+ I++A S++S + + + G L + S D T+K+W
Sbjct: 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW---------- 323
Query: 270 IPTPDNDSVWKCVCTLSGH 288
+ S C+ TL GH
Sbjct: 324 -----DVSTGMCLMTLVGH 337
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 30/191 (15%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T GH+ V V N GT+I+SC D+ +R+W K KA L + H+ +
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW---VVATK-ECKAELRE-HRHVVECI 282
Query: 104 AWSP--------------------CGNFIASASFDATTAVWDKRSGQFECNATLEGHENE 143
+W+P G F+ S S D T +WD +G C TL GH+N
Sbjct: 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNW 340
Query: 144 VKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILAS 203
V+ V + G+F+ +C+ DK++ VW+ + C +NAH V + FH + +
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVT 397
Query: 204 ASYDDTVKLFK 214
S D TVK+++
Sbjct: 398 GSVDQTVKVWE 408
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 33/192 (17%)
Query: 182 INAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFD 241
++ H V +V FHP +++ SAS D T+K++ + + + TLK HT +V ++FD
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE----RTLKGHTDSVQDISFD 159
Query: 242 RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHL 301
G LA+CS D T+K+W + ++C+ T+ GH + +S
Sbjct: 160 HSGKLLASCSADMTIKLW---------------DFQGFECIRTMHGH-DHNVSSVSIMPN 203
Query: 302 TDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPG-MLAS 360
D I +A D I++++ V H + V V P G ++AS
Sbjct: 204 GDHIVSASRDKTIKMWE----------VQTGYCVKTFTGHREWVRMV--RPNQDGTLIAS 251
Query: 361 CSDDGDVKLWQI 372
CS+D V++W +
Sbjct: 252 CSNDQTVRVWVV 263
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 72
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 131 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 185
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 186 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 229
Query: 285 LSGH 288
+GH
Sbjct: 230 YTGH 233
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 113
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 114 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 172 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 226
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 227 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------------NLQTK 269
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I+++K +
Sbjct: 270 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLWKSD 311
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 33/241 (13%)
Query: 130 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDV 189
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGI 68
Query: 190 KKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLAT 249
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 250 CSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATAC 309
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 125 GSFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSS 168
Query: 310 GDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKL 369
D RI+ D S + T N V+ V ++P +LA+ D+ +KL
Sbjct: 169 YDGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKL 218
Query: 370 W 370
W
Sbjct: 219 W 219
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 78
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 137 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 191
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 192 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 235
Query: 285 LSGH 288
+GH
Sbjct: 236 YTGH 239
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 119
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 178 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 232
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 233 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------------NLQTK 275
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I+++K +
Sbjct: 276 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLWKSD 317
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 33/241 (13%)
Query: 130 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDV 189
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGI 74
Query: 190 KKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLAT 249
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 250 CSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATAC 309
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 131 GSFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSS 174
Query: 310 GDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKL 369
D RI+ D S + T N V+ V ++P +LA+ D+ +KL
Sbjct: 175 YDGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKL 224
Query: 370 W 370
W
Sbjct: 225 W 225
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 89
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 148 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 202
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 203 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 246
Query: 285 LSGH 288
+GH
Sbjct: 247 YTGH 250
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 130
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 131 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 189 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 243
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 244 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------------NLQTK 286
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I+++K +
Sbjct: 287 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLWKSD 328
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 33/240 (13%)
Query: 131 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 190
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGIS 86
Query: 191 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 250
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSG 142
Query: 251 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACG 310
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 143 SFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSSY 186
Query: 311 DDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 370
D RI+ D S + T N V+ V ++P +LA+ D+ +KLW
Sbjct: 187 DGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLW 236
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 94
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 95 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 153 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 207
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 208 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 251
Query: 285 LSGH 288
+GH
Sbjct: 252 YTGH 255
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 135
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 194 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 248
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 249 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------------NLQTK 291
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I+++K +
Sbjct: 292 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLWKSD 333
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 33/240 (13%)
Query: 131 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 190
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGIS 91
Query: 191 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 250
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSG 147
Query: 251 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACG 310
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 148 SFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSSY 191
Query: 311 DDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 370
D RI+ D S + T N V+ V ++P +LA+ D+ +KLW
Sbjct: 192 DGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLW 241
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 73
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 132 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 186
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 187 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 230
Query: 285 LSGH 288
+GH
Sbjct: 231 YTGH 234
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 114
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 115 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 173 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 227
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 228 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------------NLQTK 270
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I+++K +
Sbjct: 271 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLWKSD 312
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 33/241 (13%)
Query: 130 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDV 189
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGI 69
Query: 190 KKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLAT 249
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVS 125
Query: 250 CSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATAC 309
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 126 GSFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSS 169
Query: 310 GDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKL 369
D RI+ D S + T N V+ V ++P +LA+ D+ +KL
Sbjct: 170 YDGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKL 219
Query: 370 W 370
W
Sbjct: 220 W 220
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 72
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 131 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 185
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 186 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 229
Query: 285 LSGH 288
+GH
Sbjct: 230 YTGH 233
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 113
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 114 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 172 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 226
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 227 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------------NLQTK 269
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I+++K +
Sbjct: 270 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLWKSD 311
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 33/241 (13%)
Query: 130 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDV 189
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGI 68
Query: 190 KKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLAT 249
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 250 CSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATAC 309
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 125 GSFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSS 168
Query: 310 GDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKL 369
D RI+ D S + T N V+ V ++P +LA+ D+ +KL
Sbjct: 169 YDGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKL 218
Query: 370 W 370
W
Sbjct: 219 W 219
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 78
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 137 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 191
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 192 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 235
Query: 285 LSGH 288
+GH
Sbjct: 236 YTGH 239
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 119
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 178 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 232
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 233 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------------NLQTK 275
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I+++K +
Sbjct: 276 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLWKSD 317
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 33/241 (13%)
Query: 130 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDV 189
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGI 74
Query: 190 KKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLAT 249
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 250 CSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATAC 309
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 131 GSFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSS 174
Query: 310 GDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKL 369
D RI+ D S + T N V+ V ++P +LA+ D+ +KL
Sbjct: 175 YDGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKL 224
Query: 370 W 370
W
Sbjct: 225 W 225
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 68
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 127 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 181
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 182 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 225
Query: 285 LSGH 288
+GH
Sbjct: 226 YTGH 229
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 109
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 110 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 168 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 222
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIW 259
T H + + + F G + + + S+D V IW
Sbjct: 223 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 30/228 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILS-DGHQRTIRE 102
+TLKGH V+ ++NPQ +I S D+++R+W + T K + + H +
Sbjct: 97 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSA 150
Query: 103 TAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHEN-EVKSVTWSKNGQFLATCSR 161
++ G+ I S+S+D +WD SGQ C TL +N V V +S NG+++ +
Sbjct: 151 VHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATL 208
Query: 162 DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNI-------LASASYDDTVKLFK 214
D ++ +W+ + +C H K ++ F N + S S D+ V ++
Sbjct: 209 DNTLKLWDYSKG---KCLKTYTGH----KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Query: 215 EDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCS--DDATVKIWK 260
E L+ HT V S A + +A+ + +D T+K+WK
Sbjct: 262 LQTKEI----VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 33/241 (13%)
Query: 130 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDV 189
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGI 64
Query: 190 KKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLAT 249
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVS 120
Query: 250 CSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATAC 309
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 121 GSFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSS 164
Query: 310 GDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKL 369
D RI+ D S + T N V+ V ++P +LA+ D+ +KL
Sbjct: 165 YDGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKL 214
Query: 370 W 370
W
Sbjct: 215 W 215
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 96
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 97 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 155 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 209
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 210 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 253
Query: 285 LSGH 288
+GH
Sbjct: 254 YTGH 257
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 137
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 138 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 196 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 250
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 251 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------------NLQTK 293
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I+++K +
Sbjct: 294 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLWKSD 335
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 33/240 (13%)
Query: 131 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 190
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGIS 93
Query: 191 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 250
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSG 149
Query: 251 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACG 310
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 150 SFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSSY 193
Query: 311 DDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 370
D RI+ D S + T N V+ V ++P +LA+ D+ +KLW
Sbjct: 194 DGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLW 243
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 71
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 130 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 184
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 185 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 228
Query: 285 LSGH 288
+GH
Sbjct: 229 YTGH 232
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 112
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 113 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 171 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 225
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIW 259
T H + + + F G + + + S+D V IW
Sbjct: 226 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 30/229 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILS-DGHQRTIRE 102
+TLKGH V+ ++NPQ +I S D+++R+W + T K + + H +
Sbjct: 100 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSA 153
Query: 103 TAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHEN-EVKSVTWSKNGQFLATCSR 161
++ G+ I S+S+D +WD SGQ C TL +N V V +S NG+++ +
Sbjct: 154 VHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATL 211
Query: 162 DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNI-------LASASYDDTVKLFK 214
D ++ +W+ + +C H K ++ F N + S S D+ V ++
Sbjct: 212 DNTLKLWDYSKG---KCLKTYTGH----KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Query: 215 EDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCS--DDATVKIWKE 261
E L+ HT V S A + +A+ + +D T+K+WK
Sbjct: 265 LQTKEI----VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 309
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 33/241 (13%)
Query: 130 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDV 189
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGI 67
Query: 190 KKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLAT 249
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVS 123
Query: 250 CSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATAC 309
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 124 GSFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSS 167
Query: 310 GDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKL 369
D RI+ D S + T N V+ V ++P +LA+ D+ +KL
Sbjct: 168 YDGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKL 217
Query: 370 W 370
W
Sbjct: 218 W 218
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 78
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 137 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 191
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 192 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 235
Query: 285 LSGH 288
+GH
Sbjct: 236 YTGH 239
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 119
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 178 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 232
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 233 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------------NLQTK 275
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I+++K +
Sbjct: 276 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLWKSD 317
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 33/241 (13%)
Query: 130 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDV 189
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGI 74
Query: 190 KKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLAT 249
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 250 CSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATAC 309
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 131 GSFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSS 174
Query: 310 GDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKL 369
D RI+ D S + T N V+ V ++P +LA+ D+ +KL
Sbjct: 175 YDGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKL 224
Query: 370 W 370
W
Sbjct: 225 W 225
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 75
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 134 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 188
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 189 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 232
Query: 285 LSGH 288
+GH
Sbjct: 233 YTGH 236
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 128/284 (45%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 116
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 175 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 229
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 230 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------------NLQTK 272
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I++FK +
Sbjct: 273 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLFKSD 314
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 33/240 (13%)
Query: 131 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 190
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGIS 72
Query: 191 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 250
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 251 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACG 310
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 129 SFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSSY 172
Query: 311 DDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 370
D RI+ D S + T N V+ V ++P +LA+ D+ +KLW
Sbjct: 173 DGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLW 222
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 75
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 134 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 188
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 189 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 232
Query: 285 LSGH 288
+GH
Sbjct: 233 YTGH 236
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 128/284 (45%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 116
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 175 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 229
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 230 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW---------------NLQTK 272
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I+++K +
Sbjct: 273 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLYKSD 314
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 33/240 (13%)
Query: 131 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 190
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGIS 72
Query: 191 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATC 250
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 251 SDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACG 310
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 129 SFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSSY 172
Query: 311 DDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 370
D RI+ D S + T N V+ V ++P +LA+ D+ +KLW
Sbjct: 173 DGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLW 222
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 77
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 136 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 190
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 191 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 234
Query: 285 LSGH 288
+GH
Sbjct: 235 YTGH 238
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 118
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 119 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 177 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 231
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIW 259
T H + + + F G + + + S+D V IW
Sbjct: 232 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 30/229 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILS-DGHQRTIRE 102
+TLKGH V+ ++NPQ +I S D+++R+W + T K + + H +
Sbjct: 106 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSA 159
Query: 103 TAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHEN-EVKSVTWSKNGQFLATCSR 161
++ G+ I S+S+D +WD SGQ C TL +N V V +S NG+++ +
Sbjct: 160 VHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATL 217
Query: 162 DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNI-------LASASYDDTVKLFK 214
D ++ +W+ + +C H K ++ F N + S S D+ V ++
Sbjct: 218 DNTLKLWDYSKG---KCLKTYTGH----KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Query: 215 EDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCS--DDATVKIWKE 261
E L+ HT V S A + +A+ + +D T+K+WK
Sbjct: 271 LQTKEI----VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 315
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 33/241 (13%)
Query: 130 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDV 189
+ TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGI 73
Query: 190 KKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLAT 249
V + N+L SAS D T+K++ + TLK H++ V+ F+ + + +
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVS 129
Query: 250 CSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATAC 309
S D +V+IW + K G KC+ TL H + + + LI ++
Sbjct: 130 GSFDESVRIW-DVKTG--------------KCLKTLPA-HSDPVSAVHFNRDGSLIVSSS 173
Query: 310 GDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKL 369
D RI+ D S + T N V+ V ++P +LA+ D+ +KL
Sbjct: 174 YDGLCRIW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKL 223
Query: 370 W 370
W
Sbjct: 224 W 224
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 75
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 134 VRIWDVKTG---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 188
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 189 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 232
Query: 285 LSGH 288
+GH
Sbjct: 233 YTGH 236
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 127/284 (44%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 116
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G C TL H + V +V ++++G + + S D
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGM--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 175 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 229
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 230 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW---------------NLQTK 272
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I+++K +
Sbjct: 273 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLWKSD 314
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 176 YECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTV 235
Y + H + V V+F P LAS+S D +K++ + + T+ H +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGI 71
Query: 236 WSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYD 295
+A+ + L + SDD T+KIW + S KC+ TL G H ++
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFC 115
Query: 296 ISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVP 355
++ ++LI + D+++RI+ V + AH+ V+ V +N
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWD----------VKTGMCLKTLPAHSDPVSAVHFNR-DG 164
Query: 356 GMLASCSDDGDVKLW 370
++ S S DG ++W
Sbjct: 165 SLIVSSSYDGLCRIW 179
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G +++ DK I++WG ++ KF K I GH+ I + A
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 75
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V +C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 134 VRIWDVKTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 188
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D T+K+W +Y G KC+ T
Sbjct: 189 -TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-DYSKG--------------KCLKT 232
Query: 285 LSGH 288
+GH
Sbjct: 233 YTGH 236
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 18/220 (8%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 116
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G+ C TL H + V +V ++++G + + S D
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+T+KL+ K +
Sbjct: 175 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-- 229
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIW 259
T H + + + F G + + + S+D V IW
Sbjct: 230 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 30/228 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILS-DGHQRTIRE 102
+TLKGH V+ ++NPQ +I S D+++R+W + T K + + H +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSA 157
Query: 103 TAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHEN-EVKSVTWSKNGQFLATCSR 161
++ G+ I S+S+D +WD SGQ C TL +N V V +S NG+++ +
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATL 215
Query: 162 DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNI-------LASASYDDTVKLFK 214
D ++ +W+ + +C H K ++ F N + S S D+ V ++
Sbjct: 216 DNTLKLWDYSKG---KCLKTYTGH----KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 215 EDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCS--DDATVKIWK 260
E L+ HT V S A + +A+ + +D T+K+WK
Sbjct: 269 LQTKEI----VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 28/244 (11%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH V +V ++P G ++S DK I++WG ++ KF K I GH+ I + A
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKF-EKTI--SGHKLGISDVA 75
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS N + SAS D T +WD SG+ C TL+GH N V ++ + + S D+S
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V C + AH V V F+ +++ S+SYD +++ D A +
Sbjct: 134 VRIWDVKTG---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLK 188
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
+ V + F G + + D +K+W +Y G KC+ T
Sbjct: 189 -TLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW-DYSKG--------------KCLKT 232
Query: 285 LSGH 288
+GH
Sbjct: 233 YTGH 236
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 126/284 (44%), Gaps = 38/284 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GH+ + +V+W+ ++ S +DK +++W S T K GH +
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-----GHSNYVFCC 116
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
++P N I S SFD + +WD ++G C TL H + V +V ++++G + + S D
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGM--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 164 SVWVWEVGEEDEYEC-AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+W+ +C +I+ V V+F P + +A+ D+ +KL+ K +
Sbjct: 175 LCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKC-- 229
Query: 223 INFATLKSHTSTVWSL--AFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
T H + + + F G + + + S+D V IW N
Sbjct: 230 --LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW---------------NLQTK 272
Query: 280 KCVCTLSGHHGRTIYDISWCHLTD-LIATAC--GDDAIRIFKEN 320
+ V L GH I + CH T+ +IA+A D I+++K +
Sbjct: 273 EIVQKLQGHTDVVIS--TACHPTENIIASAALENDKTIKLWKSD 314
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 33/235 (14%)
Query: 136 TLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFH 195
TL GH V SV +S NG++LA+ S DK + +W + ++E I+ H + V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG-AYDGKFE--KTISGHKLGISDVAWS 77
Query: 196 PFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDAT 255
N+L SAS D T+K++ + TLK H++ V+ F+ + + + S D +
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 256 VKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIR 315
V+IW + K G C+ TL H + + + LI ++ D R
Sbjct: 134 VRIW-DVKTG--------------MCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 316 IFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 370
I+ D S + T N V+ V ++P +LA+ D+ D+KLW
Sbjct: 178 IW---------DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-DLKLW 222
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 176 YECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTV 235
Y + H + V V+F P LAS+S D +K++ + + T+ H +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGI 71
Query: 236 WSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYD 295
+A+ + L + SDD T+KIW + S KC+ TL G H ++
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIW---------------DVSSGKCLKTLKG-HSNYVFC 115
Query: 296 ISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVP 355
++ ++LI + D+++RI+ V + AH+ V+ V +N
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWD----------VKTGMCLKTLPAHSDPVSAVHFNR-DG 164
Query: 356 GMLASCSDDGDVKLW 370
++ S S DG ++W
Sbjct: 165 SLIVSSSYDGLCRIW 179
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 132/297 (44%), Gaps = 41/297 (13%)
Query: 49 HQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP- 107
H+ + + + GT +++C D++++++ + G A GH+ + + AW+
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL---RGHEGPVWQVAWAHP 68
Query: 108 -CGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKN--GQFLATCSRDKS 164
GN +AS S+D +W + +G +E + GH++ V SV W+ + G LA S D +
Sbjct: 69 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHP-----------------FDNILASASYD 207
+ + E ++E + NAH V + P + AS D
Sbjct: 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD 188
Query: 208 DTVKLFKEDKAEADWINFATLKSHTSTV----WSLAFDRIGSRLATCSDDATVKIWKEYK 263
+ +KL+KE++ + W L++H+ V W+ + S +A+CS D V IW
Sbjct: 189 NLIKLWKEEE-DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW---- 243
Query: 264 PGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKEN 320
T D+ S L ++ +SW +++A + GD+ + ++KE+
Sbjct: 244 --------TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 29/247 (11%)
Query: 46 LKGHQGRVWNVSW-NPQ-GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
L+GH+G VW V+W +P G +++SC D+ + +W +E N K+ GH ++
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE---NGTWEKSHEHAGHDSSVNSV 109
Query: 104 AWSP--CGNFIASASFDATTAVWDKRS-GQFECNATLEGHENEVKSVTWSK--------- 151
W+P G +A S D ++ GQ+E H +V+W+
Sbjct: 110 CWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169
Query: 152 --NGQ------FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNI--- 200
+GQ A+ D + +W+ E+ +++ + AH V+ V + P +
Sbjct: 170 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229
Query: 201 -LASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
+AS S D V ++ D A ++ + L VW +++ + LA D V +W
Sbjct: 230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
Query: 260 KEYKPGN 266
KE G
Sbjct: 290 KESVDGQ 296
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 230 SHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHH 289
SH + D G+RLATCS D +VKI + N I D L GH
Sbjct: 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKI---FDVRNGGQILIAD----------LRGHE 57
Query: 290 GRTIYDISWCH--LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 347
G ++ ++W H +++A+ D + I++E E G +++ H EH H+ VN
Sbjct: 58 G-PVWQVAWAHPMYGNILASCSYDRKVIIWRE--ENG-----TWEKSH-EHAGHDSSVNS 108
Query: 348 VAWNPVVPGMLASC-SDDGDVKL 369
V W P G++ +C S DG + L
Sbjct: 109 VCWAPHDYGLILACGSSDGAISL 131
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 104/249 (41%), Gaps = 35/249 (14%)
Query: 140 HENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF-HP-F 197
HE+ + G LATCS D+SV +++V + A + H V +V + HP +
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMY 70
Query: 198 DNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL--AFDRIGSRLATCSDDAT 255
NILAS SYD V +++E+ W H S+V S+ A G LA S D
Sbjct: 71 GNILASCSYDRKVIIWREENGT--WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128
Query: 256 VKI--------WKEYKPGNSAGIPTPDNDSVWKCVC---TLSGHHGRTIYDISWCHLTDL 304
+ + W+ K N+ I N W +L H + ++
Sbjct: 129 ISLLTYTGEGQWEVKKINNAHTIGC--NAVSWAPAVVPGSLIDHPSGQKPN----YIKRF 182
Query: 305 IATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVV---PGMLASC 361
+ C D+ I+++KE + + + AH+ V VAW P + +ASC
Sbjct: 183 ASGGC-DNLIKLWKEEEDGQWKEEQKLE-------AHSDWVRDVAWAPSIGLPTSTIASC 234
Query: 362 SDDGDVKLW 370
S DG V +W
Sbjct: 235 SQDGRVFIW 243
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 65 ISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNF----IASASFDAT 120
+S G D I+LW +E G + + + H +R+ AW+P IAS S D
Sbjct: 182 FASGGCDNLIKLWKEEEDGQWKEEQKL--EAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 121 TAVW--DKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYEC 178
+W D S L + V V+WS LA D V +W+ + ++ C
Sbjct: 240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVC 299
Query: 179 AAVIN 183
+ +N
Sbjct: 300 ISDVN 304
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 153/343 (44%), Gaps = 63/343 (18%)
Query: 37 RCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILS-DG 95
R E+ + + LKGH V G I S +D +++W + T K + + G
Sbjct: 105 RGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVW------SAVTGKCLRTLVG 157
Query: 96 HQRTIRETAWSPC--GNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNG 153
H + WS N I S S D T VW+ +G EC TL GH + V+ + +
Sbjct: 158 HTGGV----WSSQMRDNIIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHE-- 209
Query: 154 QFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLF 213
+ + + SRD ++ VW++ + +C V+ H+ V+ V++ + S +YD VK++
Sbjct: 210 KRVVSGSRDATLRVWDI---ETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVW 264
Query: 214 KEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTP 273
+ TL+ HT+ V+SL FD G + + S D ++++W + + GN
Sbjct: 265 DPETETC----LHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVW-DVETGN------- 310
Query: 274 DNDSVWKCVCTLSGHHGRTIYDISWCHLTD-LIATACGDDAIRIFKENPEAGDSDMVSFD 332
C+ TL+GH T S L D ++ + D ++I+ D+ +
Sbjct: 311 -------CIHTLTGHQSLT----SGMELKDNILVSGNADSTVKIW---------DIKTGQ 350
Query: 333 LVHTEH--RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
+ T H V C+ +N + + SDDG VKLW +K
Sbjct: 351 CLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLK 390
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 39/132 (29%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW------------GKESF--GNKFTAK 89
TL+GH RV+++ ++ G + S D +IR+W G +S G +
Sbjct: 273 HTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 330
Query: 90 AILSDGHQRTIR----------ETAWSP--------C----GNFIASASFDATTAVWDKR 127
++S T++ +T P C NF+ ++S D T +WD +
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390
Query: 128 SGQFECN-ATLE 138
+G+F N TLE
Sbjct: 391 TGEFIRNLVTLE 402
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 37/237 (15%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL+GH V +I+ +DK IR++ +S KF + GH +
Sbjct: 116 TLRGHMTSVITCLQFEDNYVITGA-DDKMIRVY--DSINKKFLLQL---SGHDGGVWALK 169
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVK--SVTWSKNGQFLATCSRD 162
++ G + S S D T VWD + G C EGH + V+ + KN +++ T SRD
Sbjct: 170 YAH-GGILVSGSTDRTVRVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 226
Query: 163 KSVWVWEV---------GEEDEYECA-----------AVINAHIQDVKKVRFHPFDNILA 202
++ VW++ GEE +Y V+ H+ V+ V H NI+
Sbjct: 227 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--GNIVV 284
Query: 203 SASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
S SYD+T+ ++ + + +I L HT ++S +D R + S D T++IW
Sbjct: 285 SGSYDNTLIVWDVAQMKCLYI----LSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 95 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQ 154
GH ++R S GN + S S+D T VWD Q +C L GH + + S + +
Sbjct: 268 GHMASVRTV--SGHGNIVVSGSYDNTLIVWD--VAQMKCLYILSGHTDRIYSTIYDHERK 323
Query: 155 FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVK 211
+ S D ++ +W++ + E + H V +R D L SA+ D +++
Sbjct: 324 RCISASMDTTIRIWDL---ENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIR 375
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 32 LILCSRCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAI 91
LI+ +M L GH R+++ ++ + S D IR+W E+ +T +
Sbjct: 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-- 349
Query: 92 LSDGHQRTIRETAWSPCGNFIASASFDATTAVWD 125
GH + S F+ SA+ D + WD
Sbjct: 350 ---GHTALVGLLRLSD--KFLVSAAADGSIRGWD 378
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 118/280 (42%), Gaps = 65/280 (23%)
Query: 9 TLLDNQYLL-----PKTIPSTENLTG--TNLILCSRCEMINSQTLKGHQGRVWNVSWNPQ 61
+ L+N ++L PK +P L G T++I C + E
Sbjct: 94 SFLENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFE---------------------- 131
Query: 62 GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATT 121
+ + +DK IR++ +S KF + GH + ++ G + S S D T
Sbjct: 132 DNYVITGADDKXIRVY--DSINKKFLLQL---SGHDGGVWALKYAH-GGILVSGSTDRTV 185
Query: 122 AVWDKRSGQFECNATLEGHENEVK--SVTWSKNGQFLATCSRDKSVWVWEV--------- 170
VWD + G C EGH + V+ + KN +++ T SRD ++ VW++
Sbjct: 186 RVWDIKKGC--CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243
Query: 171 GEEDEYECA-----------AVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAE 219
GEE +Y V+ H V+ V H NI+ S SYD+T+ ++ + +
Sbjct: 244 GEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGH--GNIVVSGSYDNTLIVWDVAQXK 301
Query: 220 ADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
+I L HT ++S +D R + S D T++IW
Sbjct: 302 CLYI----LSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 95 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQ 154
GH ++R S GN + S S+D T VWD Q +C L GH + + S + +
Sbjct: 268 GHXASVRTV--SGHGNIVVSGSYDNTLIVWD--VAQXKCLYILSGHTDRIYSTIYDHERK 323
Query: 155 FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVK 211
+ S D ++ +W++ + E + H V +R D L SA+ D +++
Sbjct: 324 RCISASXDTTIRIWDL---ENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGSIR 375
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAW 105
L GH R+++ ++ + S D IR+W E+ +T + GH +
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQ-----GHTALVGLLRL 360
Query: 106 SPCGNFIASASFDATTAVWD 125
S F+ SA+ D + WD
Sbjct: 361 SD--KFLVSAAADGSIRGWD 378
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 120/271 (44%), Gaps = 34/271 (12%)
Query: 46 LKGHQGRVWNVSWNPQ----GTMISSCGEDKNIRLWGKESFGNKFTAKAILSD----GHQ 97
L GH+G V +++ PQ T + S DK + WG + L D GH
Sbjct: 9 LTGHRGWVTSLA-CPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 98 RTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
+ + A S GNF SAS+D + +W+ ++GQ C GH +V SV +S + + +
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQ--CQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVIN--AHIQDVKKVRFHPFDN--ILASASYDDTVKLF 213
+ RD ++ VW V + EC ++ AH V VRF P + ++ S +D+ VK++
Sbjct: 126 SGGRDNALRVWNV----KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 214 KEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW----KEYKPGNSAG 269
D A + LK HT+ V S+ GS A+ D ++W E +AG
Sbjct: 182 --DLATGRLVT--DLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAG 237
Query: 270 IPTPD----NDSVWKCVCTLSGHHGRTIYDI 296
P + W C T G I+D+
Sbjct: 238 APINQICFSPNRYWMCAAT---EKGIRIFDL 265
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAW 105
LKGH V +V+ +P G++ +S +D RLW + +A+ I + +
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLW------DLTKGEALSEMAAGAPINQICF 245
Query: 106 SPCGNFIASASFDATTAVWDKRSGQF--ECNATLEGHEN---EVKSVTWSKNGQFLATCS 160
SP + A+ + ++D + E +G + E S+ WS +G L +
Sbjct: 246 SP-NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGY 304
Query: 161 RDKSVWVWEVGE 172
D + VW V E
Sbjct: 305 TDNVIRVWGVSE 316
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 21/235 (8%)
Query: 34 LCSRCEMINSQTLKGHQGRVWNVSWNP-QGTMISSCGEDKNIRLWGKESFGNKFTAKAIL 92
+ S ++ TL+GH G V +++ + Q ++ S DK + W KF
Sbjct: 1 MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS 60
Query: 93 SDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKN 152
GH +++ + G + SAS+D T +WD +G E GH+++V SV K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKK 118
Query: 153 GQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN------ILASASY 206
+ + SRDK++ VW + + +C A + H V +VR P + + SA
Sbjct: 119 ASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 207 DDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
D VK + + EAD+I H S + +L G+ +A+ D + +W
Sbjct: 175 DKMVKAWNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 104/250 (41%), Gaps = 43/250 (17%)
Query: 133 CNATLEGHENEVKSVTWSKNGQ--FLATCSRDKSVWVWEVGEEDEYECAAV--INAHIQD 188
TLEGH V S+ S GQ L + SRDK++ W++ +D+ V H
Sbjct: 9 LRGTLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 189 VKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLA 248
V+ SAS+D T++L+ E + H S V S+ D+ S +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGE----TYQRFVGHKSDVMSVDIDKKASMII 123
Query: 249 TCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIAT- 307
+ S D T+K+W +C+ TL GH+ W ++
Sbjct: 124 SGSRDKTIKVWTIKG----------------QCLATLLGHN-------DWVSQVRVVPNE 160
Query: 308 ACGDDAIRIFKENPEAGDSDMV-SFDL----VHTEHRAHNQDVNCVAWNPVVPGMLASCS 362
DD++ I AG+ MV +++L + + HN ++N + +P ++AS
Sbjct: 161 KADDDSVTII----SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD-GTLIASAG 215
Query: 363 DDGDVKLWQI 372
DG++ LW +
Sbjct: 216 KDGEIMLWNL 225
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP 107
GH + ++ +P GT+I+S G+D I LW N KA+ + Q + A+SP
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLW------NLAAKKAMYTLSAQDEVFSLAFSP 247
Query: 108 CGNFIASA--------SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATC 159
++A+A S D V D R E + E S+ WS +GQ L
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRP---EFAGYSKAAEPHAVSLAWSADGQTLFAG 304
Query: 160 SRDKSVWVWEV 170
D + VW+V
Sbjct: 305 YTDNVIRVWQV 315
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
Q GH+ V +V + + +MI S DK I++W + + A + GH + +
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW---TIKGQCLATLL---GHNDWVSQV 154
Query: 104 AWSPCGNF------IASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
P I SA D W+ QF+ A GH + + ++T S +G +A
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN--QFQIEADFIGHNSNINTLTASPDGTLIA 212
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAHIQD-VKKVRFHPFDNILASASYDDTVKLFKED 216
+ +D + +W + + A+ QD V + F P LA+A+ +K+F D
Sbjct: 213 SAGKDGEIMLWNLAAKK-----AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLD 266
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWG---KESFGNKFTAKAILSDGHQRTI 100
++ KGH V + + G S DK +RLW E++ +F GH+ +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-QRFV-------GHKSDV 110
Query: 101 RETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQF----- 155
+ I S S D T VW + +C ATL GH + V V N +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 156 -LATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
+ + DK V W + ++++ A H ++ + P ++ASA D + L+
Sbjct: 168 TIISAGNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 215 EDKAEADWINFATLKSHTSTVWSLAF 240
+A + TL + V+SLAF
Sbjct: 225 LAAKKAMY----TLSAQ-DEVFSLAF 245
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 21/235 (8%)
Query: 34 LCSRCEMINSQTLKGHQGRVWNVSWNP-QGTMISSCGEDKNIRLWGKESFGNKFTAKAIL 92
+ S ++ TL+GH G V +++ + Q ++ S DK + W KF
Sbjct: 1 MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS 60
Query: 93 SDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKN 152
GH +++ + G + SAS+D T +WD +G E GH+++V SV K
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKK 118
Query: 153 GQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN------ILASASY 206
+ + SRDK++ VW + + +C A + H V +VR P + + SA
Sbjct: 119 ASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174
Query: 207 DDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
D VK + + EAD+I H S + +L G+ +A+ D + +W
Sbjct: 175 DKMVKAWNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 104/250 (41%), Gaps = 43/250 (17%)
Query: 133 CNATLEGHENEVKSVTWSKNGQ--FLATCSRDKSVWVWEVGEEDEYECAAV--INAHIQD 188
TLEGH V S+ S GQ L + SRDK++ W++ +D+ V H
Sbjct: 9 LRGTLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 189 VKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLA 248
V+ SAS+D T++L+ E + H S V S+ D+ S +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGE----TYQRFVGHKSDVMSVDIDKKASMII 123
Query: 249 TCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIAT- 307
+ S D T+K+W +C+ TL GH+ W ++
Sbjct: 124 SGSRDKTIKVWTIKG----------------QCLATLLGHN-------DWVSQVRVVPNE 160
Query: 308 ACGDDAIRIFKENPEAGDSDMV-SFDL----VHTEHRAHNQDVNCVAWNPVVPGMLASCS 362
DD++ I AG+ MV +++L + + HN ++N + +P ++AS
Sbjct: 161 KADDDSVTII----SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD-GTLIASAG 215
Query: 363 DDGDVKLWQI 372
DG++ LW +
Sbjct: 216 KDGEIMLWNL 225
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP 107
GH + ++ +P GT+I+S G+D I LW N KA+ + Q + A+SP
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLW------NLAAKKAMYTLSAQDEVFSLAFSP 247
Query: 108 CGNFIASA--------SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATC 159
++A+A S D V D R E + E S+ WS +GQ L
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRP---EFAGYSKAAEPHAVSLAWSADGQTLFAG 304
Query: 160 SRDKSVWVWE 169
D + VW+
Sbjct: 305 YTDNVIRVWQ 314
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
Q GH+ V +V + + +MI S DK I++W + + A + GH + +
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW---TIKGQCLATLL---GHNDWVSQV 154
Query: 104 AWSPCGNF------IASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
P I SA D W+ QF+ A GH + + ++T S +G +A
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN--QFQIEADFIGHNSNINTLTASPDGTLIA 212
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAHIQD-VKKVRFHPFDNILASASYDDTVKLFKED 216
+ +D + +W + + A+ QD V + F P LA+A+ +K+F D
Sbjct: 213 SAGKDGEIMLWNLAAKK-----AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLD 266
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWG---KESFGNKFTAKAILSDGHQRTI 100
++ KGH V + + G S DK +RLW E++ +F GH+ +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-QRFV-------GHKSDV 110
Query: 101 RETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQF----- 155
+ I S S D T VW + +C ATL GH + V V N +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 156 -LATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
+ + DK V W + ++++ A H ++ + P ++ASA D + L+
Sbjct: 168 TIISAGNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 215 EDKAEADWINFATLKSHTSTVWSLAF 240
+A + TL + V+SLAF
Sbjct: 225 LAAKKAMY----TLSAQ-DEVFSLAF 245
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 21/229 (9%)
Query: 40 MINSQTLKGHQGRVWNVSWNP-QGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQR 98
++ TL+GH G V +++ + Q ++ S DK + W KF GH
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 99 TIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLAT 158
+++ + G + SAS+D T +WD +G E GH+++V SV K + +
Sbjct: 61 IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 118
Query: 159 CSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN------ILASASYDDTVKL 212
SRDK++ VW + + +C A + H V +VR P + + SA D VK
Sbjct: 119 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 213 --FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
+ + EAD+I H S + +L G+ +A+ D + +W
Sbjct: 175 WNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 217
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 104/250 (41%), Gaps = 43/250 (17%)
Query: 133 CNATLEGHENEVKSVTWSKNGQ--FLATCSRDKSVWVWEVGEEDEYECAAV--INAHIQD 188
TLEGH V S+ S GQ L + SRDK++ W++ +D+ V H
Sbjct: 3 LRGTLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 189 VKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLA 248
V+ SAS+D T++L+ E + H S V S+ D+ S +
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGE----TYQRFVGHKSDVMSVDIDKKASMII 117
Query: 249 TCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIAT- 307
+ S D T+K+W +C+ TL GH+ W ++
Sbjct: 118 SGSRDKTIKVWTIKG----------------QCLATLLGHN-------DWVSQVRVVPNE 154
Query: 308 ACGDDAIRIFKENPEAGDSDMV-SFDL----VHTEHRAHNQDVNCVAWNPVVPGMLASCS 362
DD++ I AG+ MV +++L + + HN ++N + +P ++AS
Sbjct: 155 KADDDSVTII----SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD-GTLIASAG 209
Query: 363 DDGDVKLWQI 372
DG++ LW +
Sbjct: 210 KDGEIMLWNL 219
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP 107
GH + ++ +P GT+I+S G+D I LW N KA+ + Q + A+SP
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLW------NLAAKKAMYTLSAQDEVFSLAFSP 241
Query: 108 CGNFIASA--------SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATC 159
++A+A S D V D R E + E S+ WS +GQ L
Sbjct: 242 NRYWLAAATATGIKVFSLDPQYLVDDLRP---EFAGYSKAAEPHAVSLAWSADGQTLFAG 298
Query: 160 SRDKSVWVWEV 170
D + VW+V
Sbjct: 299 YTDNVIRVWQV 309
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
Q GH+ V +V + + +MI S DK I++W + + A + GH + +
Sbjct: 95 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW---TIKGQCLATLL---GHNDWVSQV 148
Query: 104 AWSPCGNF------IASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
P I SA D W+ QF+ A GH + + ++T S +G +A
Sbjct: 149 RVVPNEKADDDSVTIISAGNDKMVKAWNLN--QFQIEADFIGHNSNINTLTASPDGTLIA 206
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAHIQD-VKKVRFHPFDNILASASYDDTVKLFKED 216
+ +D + +W + + A+ QD V + F P LA+A+ +K+F D
Sbjct: 207 SAGKDGEIMLWNLAAKK-----AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLD 260
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW---GKESFGNKFTAKAILSDGHQRTI 100
++ KGH V + + G S DK +RLW E++ +F GH+ +
Sbjct: 53 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-QRFV-------GHKSDV 104
Query: 101 RETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQF----- 155
+ I S S D T VW + +C ATL GH + V V N +
Sbjct: 105 MSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEKADDDSV 161
Query: 156 -LATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
+ + DK V W + ++++ A H ++ + P ++ASA D + L+
Sbjct: 162 TIISAGNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 215 EDKAEADWINFATLKSHTSTVWSLAF 240
+A + TL + V+SLAF
Sbjct: 219 LAAKKAMY----TLSAQ-DEVFSLAF 239
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 21/229 (9%)
Query: 40 MINSQTLKGHQGRVWNVSWNP-QGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQR 98
++ TL+GH G V +++ + Q ++ S DK + W KF GH
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 99 TIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLAT 158
+++ + G + SAS+D T +WD +G E GH+++V SV K + +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 159 CSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN------ILASASYDDTVKL 212
SRDK++ VW + + +C A + H V +VR P + + SA D VK
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 213 --FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
+ + EAD+I H S + +L G+ +A+ D + +W
Sbjct: 181 WNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 104/250 (41%), Gaps = 43/250 (17%)
Query: 133 CNATLEGHENEVKSVTWSKNGQ--FLATCSRDKSVWVWEVGEEDEYECAAV--INAHIQD 188
TLEGH V S+ S GQ L + SRDK++ W++ +D+ V H
Sbjct: 9 LRGTLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 189 VKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLA 248
V+ SAS+D T++L+ E + H S V S+ D+ S +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGE----TYQRFVGHKSDVMSVDIDKKASMII 123
Query: 249 TCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIAT- 307
+ S D T+K+W +C+ TL GH+ W ++
Sbjct: 124 SGSRDKTIKVWTIKG----------------QCLATLLGHN-------DWVSQVRVVPNE 160
Query: 308 ACGDDAIRIFKENPEAGDSDMV-SFDL----VHTEHRAHNQDVNCVAWNPVVPGMLASCS 362
DD++ I AG+ MV +++L + + HN ++N + +P ++AS
Sbjct: 161 KADDDSVTII----SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD-GTLIASAG 215
Query: 363 DDGDVKLWQI 372
DG++ LW +
Sbjct: 216 KDGEIMLWNL 225
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP 107
GH + ++ +P GT+I+S G+D I LW N KA+ + Q + A+SP
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLW------NLAAKKAMYTLSAQDEVFSLAFSP 247
Query: 108 CGNFIASA--------SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATC 159
++A+A S D V D R E + E S+ WS +GQ L
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRP---EFAGYSKAAEPHAVSLAWSADGQTLFAG 304
Query: 160 SRDKSVWVWEV 170
D + VW+V
Sbjct: 305 YTDNVIRVWQV 315
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
Q GH+ V +V + + +MI S DK I++W + + A + GH + +
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW---TIKGQCLATLL---GHNDWVSQV 154
Query: 104 AWSPCGNF------IASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
P I SA D W+ QF+ A GH + + ++T S +G +A
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN--QFQIEADFIGHNSNINTLTASPDGTLIA 212
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAHIQD-VKKVRFHPFDNILASASYDDTVKLFKED 216
+ +D + +W + + A+ QD V + F P LA+A+ +K+F D
Sbjct: 213 SAGKDGEIMLWNLAAKK-----AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLD 266
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWG---KESFGNKFTAKAILSDGHQRTI 100
++ KGH V + + G S DK +RLW E++ +F GH+ +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-QRFV-------GHKSDV 110
Query: 101 RETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQF----- 155
+ I S S D T VW + +C ATL GH + V V N +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 156 -LATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
+ + DK V W + ++++ A H ++ + P ++ASA D + L+
Sbjct: 168 TIISAGNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 215 EDKAEADWINFATLKSHTSTVWSLAF 240
+A + TL + V+SLAF
Sbjct: 225 LAAKKAMY----TLSAQ-DEVFSLAF 245
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 21/229 (9%)
Query: 40 MINSQTLKGHQGRVWNVSWNP-QGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQR 98
++ TL+GH G V +++ + Q ++ S DK + W KF GH
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 99 TIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLAT 158
+++ + G + SAS+D T +WD +G E GH+++V SV K + +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIIS 124
Query: 159 CSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN------ILASASYDDTVKL 212
SRDK++ VW + + +C A + H V +VR P + + SA D VK
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 213 --FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
+ + EAD+I H S + +L G+ +A+ D + +W
Sbjct: 181 WNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 104/250 (41%), Gaps = 43/250 (17%)
Query: 133 CNATLEGHENEVKSVTWSKNGQ--FLATCSRDKSVWVWEVGEEDEYECAAV--INAHIQD 188
TLEGH V S+ S GQ L + SRDK++ W++ +D+ V H
Sbjct: 9 LRGTLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 189 VKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLA 248
V+ SAS+D T++L+ E + H S V S+ D+ S +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGE----TYQRFVGHKSDVMSVDIDKKASMII 123
Query: 249 TCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIAT- 307
+ S D T+K+W +C+ TL GH+ W ++
Sbjct: 124 SGSRDKTIKVWTIKG----------------QCLATLLGHN-------DWVSQVRVVPNE 160
Query: 308 ACGDDAIRIFKENPEAGDSDMV-SFDL----VHTEHRAHNQDVNCVAWNPVVPGMLASCS 362
DD++ I AG+ MV +++L + + HN ++N + +P ++AS
Sbjct: 161 KADDDSVTII----SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD-GTLIASAG 215
Query: 363 DDGDVKLWQI 372
DG++ LW +
Sbjct: 216 KDGEIMLWNL 225
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP 107
GH + ++ +P GT+I+S G+D I LW N KA+ + Q + A+SP
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLW------NLAAKKAMYTLSAQDEVFSLAFSP 247
Query: 108 CGNFIASA--------SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATC 159
++A+A S D V D R +A E H S+ WS +GQ L
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPH---AVSLAWSADGQTLFAG 304
Query: 160 SRDKSVWVWEV 170
D + VW+V
Sbjct: 305 YTDNVIRVWQV 315
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
Q GH+ V +V + + +MI S DK I++W + + A + GH + +
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW---TIKGQCLATLL---GHNDWVSQV 154
Query: 104 AWSPCGNF------IASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
P I SA D W+ QF+ A GH + + ++T S +G +A
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLN--QFQIEADFIGHNSNINTLTASPDGTLIA 212
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAHIQD-VKKVRFHPFDNILASASYDDTVKLFKED 216
+ +D + +W + + A+ QD V + F P LA+A+ +K+F D
Sbjct: 213 SAGKDGEIMLWNLAAKK-----AMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLD 266
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW---GKESFGNKFTAKAILSDGHQRTI 100
++ KGH V + + G S DK +RLW E++ +F GH+ +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-QRFV-------GHKSDV 110
Query: 101 RETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQF----- 155
+ I S S D T VW + +C ATL GH + V V N +
Sbjct: 111 MSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 156 -LATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
+ + DK V W + ++++ A H ++ + P ++ASA D + L+
Sbjct: 168 TIISAGNDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 215 EDKAEADWINFATLKSHTSTVWSLAF 240
+A + TL + V+SLAF
Sbjct: 225 LAAKKAMY----TLSAQ-DEVFSLAF 245
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 83/174 (47%), Gaps = 12/174 (6%)
Query: 41 INSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTI 100
++ ++ H V++ ++ G I+SCG DK ++++ E+ KA H+ +
Sbjct: 612 LSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKA-----HEDEV 666
Query: 101 RETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVK--SVTWSKNGQFLAT 158
A+S FIA+ S D +W+ +G E T + H +V T S + LAT
Sbjct: 667 LCCAFSTDDRFIATCSVDKKVKIWNSMTG--ELVHTYDEHSEQVNCCHFTNSSHHLLLAT 724
Query: 159 CSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKL 212
S D + +W++ ++ EC + H V RF P D +LAS S D T+KL
Sbjct: 725 GSSDCFLKLWDLNQK---ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 93/216 (43%), Gaps = 33/216 (15%)
Query: 96 HQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQF 155
H + +S G IAS D T V+ +G E ++ HE+EV +S + +F
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETG--EKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 156 LATCSRDKSVWVWE--VGEEDEYECAAVINAHIQDVKKVRFHPFDN-----ILASASYDD 208
+ATCS DK V +W GE +++ + + ++V F N +LA+ S D
Sbjct: 678 IATCSVDKKVKIWNSMTGE--------LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC 729
Query: 209 TVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSA 268
+KL+ ++ E T+ HT++V F LA+CS D T+K+W
Sbjct: 730 FLKLWDLNQKECR----NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERK 785
Query: 269 GI-----------PTPDNDSVWKCVCTLSGHHGRTI 293
I P D + + KC C+ S R +
Sbjct: 786 SINVKQFFLNLEDPQEDMEVIVKC-CSWSADGARIM 820
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/376 (21%), Positives = 144/376 (38%), Gaps = 84/376 (22%)
Query: 57 SWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASAS 116
SW+ G I ++K I L+ + G + GH TI+ +SP + A
Sbjct: 811 SWSADGARIMVAAKNK-IFLFDIHTSG----LLGEIHTGHHSTIQYCDFSPQNHLAVVAL 865
Query: 117 FDATTAVW--DKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWE----- 169
+W D RS +C GH + V V +S +G T S D+++ +WE
Sbjct: 866 SQYCVELWNTDSRSKVADC----RGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVC 921
Query: 170 -------------VGEEDEYECAAVINAHIQDVKKVR------------------FHPFD 198
V +E+E AV HI+ ++ + P
Sbjct: 922 KNSAVMLKQEVDVVFQENEVMVLAV--DHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHL 979
Query: 199 NILASASYDDTVKLFKEDKAEADWIN---FATLKSHTSTVWSLAFDRIGSRLATCSDDAT 255
+A + +++ + +N F + H TVW + F L + SDDA
Sbjct: 980 QYIAFGDENGAIEIL-------ELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAE 1032
Query: 256 VKIW-----------------KEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW 298
+++W K+++ ++ + + D K ++G+ +
Sbjct: 1033 IQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFV---- 1088
Query: 299 CHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEH--RAHNQDVNCVAWNPVVPG 356
CH +++ DA + F + + SFDL+ H R HN V C A++ V
Sbjct: 1089 CHQGTVLSCDISHDATK-FSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS-VDST 1146
Query: 357 MLASCSDDGDVKLWQI 372
+LA+ D+G++++W +
Sbjct: 1147 LLATGDDNGEIRIWNV 1162
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 29/190 (15%)
Query: 181 VINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAF 240
V+ H V F +AS D T+++FK + E +K+H V AF
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGE----KLLEIKAHEDEVLCCAF 671
Query: 241 DRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCH 300
+ATCS D VKIW G ++ V C T S HH
Sbjct: 672 STDDRFIATCSVDKKVKIWNSM-TGELVHTYDEHSEQVNCCHFTNSSHHL---------- 720
Query: 301 LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLAS 360
L+AT D ++++ N + + M H VN ++P +LAS
Sbjct: 721 ---LLATGSSDCFLKLWDLNQKECRNTMF----------GHTNSVNHCRFSPD-DKLLAS 766
Query: 361 CSDDGDVKLW 370
CS DG +KLW
Sbjct: 767 CSADGTLKLW 776
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 39 EMINSQTLKG---HQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDG 95
E++N++ + H+ VW++ + + S +D I++W N K I G
Sbjct: 995 ELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVW------NWQLDKCIFLRG 1048
Query: 96 HQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQF 155
HQ T+++ + S SFD T VW+ +G E + H+ V S S +
Sbjct: 1049 HQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDFVC--HQGTVLSCDISHDATK 1105
Query: 156 LATCSRDKSVWVW 168
++ S DK+ +W
Sbjct: 1106 FSSTSADKTAKIW 1118
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 49 HQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPC 108
HQG V + + T SS DK ++W SF + GH +R +A+S
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIW---SFDLLLPLHEL--RGHNGCVRCSAFSVD 1144
Query: 109 GNFIASASFDATTAVWDKRSGQF 131
+A+ + +W+ +G+
Sbjct: 1145 STLLATGDDNGEIRIWNVSNGEL 1167
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 21/229 (9%)
Query: 40 MINSQTLKGHQGRVWNVSWNP-QGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQR 98
++ TL+GH G V +++ + Q ++ S DK + W KF GH
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 99 TIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLAT 158
+++ + G + SAS+D T +WD +G E GH+++V SV K + +
Sbjct: 67 IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 159 CSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN------ILASASYDDTVKL 212
SRDK++ VW + + +C A + H V +VR P + + SA D VK
Sbjct: 125 GSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 213 --FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
+ + EAD+I H S + +L G+ +A+ D + +W
Sbjct: 181 WNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIXLW 223
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 101/249 (40%), Gaps = 41/249 (16%)
Query: 133 CNATLEGHENEVKSVTWSKNGQ--FLATCSRDKSVWVWEVGEEDEYECAAV--INAHIQD 188
TLEGH V S+ S GQ L + SRDK++ W++ +D+ V H
Sbjct: 9 LRGTLEGHNGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 189 VKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLA 248
V+ SAS+D T++L+ E + H S V S+ D+ S +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGE----TYQRFVGHKSDVXSVDIDKKASXII 123
Query: 249 TCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIAT- 307
+ S D T+K+W +C+ TL GH+ W ++
Sbjct: 124 SGSRDKTIKVWTIKG----------------QCLATLLGHN-------DWVSQVRVVPNE 160
Query: 308 ACGDDAIRIFKENPEAGDSDMVSFDL----VHTEHRAHNQDVNCVAWNPVVPGMLASCSD 363
DD++ I D + +++L + + HN ++N + +P ++AS
Sbjct: 161 KADDDSVTIISA---GNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPD-GTLIASAGK 216
Query: 364 DGDVKLWQI 372
DG++ LW +
Sbjct: 217 DGEIXLWNL 225
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP 107
GH + ++ +P GT+I+S G+D I LW N KA + Q + A+SP
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLW------NLAAKKAXYTLSAQDEVFSLAFSP 247
Query: 108 CGNFIASA--------SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATC 159
++A+A S D V D R E + E S+ WS +GQ L
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRP---EFAGYSKAAEPHAVSLAWSADGQTLFAG 304
Query: 160 SRDKSVWVWEV 170
D + VW+V
Sbjct: 305 YTDNVIRVWQV 315
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWG---KESFGNKFTAKAILSDGHQRTI 100
++ KGH V + + G S DK +RLW E++ +F GH+ +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY-QRFV-------GHKSDV 110
Query: 101 RETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQF----- 155
+ I S S D T VW + +C ATL GH + V V N +
Sbjct: 111 XSVDIDKKASXIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 156 -LATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
+ + DK V W + ++++ A H ++ + P ++ASA D + L+
Sbjct: 168 TIISAGNDKXVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Query: 215 EDKAEADWINFATLKSHTSTVWSLAF 240
+A + TL + V+SLAF
Sbjct: 225 LAAKKAXY----TLSAQ-DEVFSLAF 245
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 19/179 (10%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
Q GH+ V +V + + + I S DK I++W + + A + GH + +
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW---TIKGQCLATLL---GHNDWVSQV 154
Query: 104 AWSPCGNF------IASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
P I SA D W+ QF+ A GH + + ++T S +G +A
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKXVKAWNLN--QFQIEADFIGHNSNINTLTASPDGTLIA 212
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKED 216
+ +D + +W + + + ++A +V + F P LA+A+ +K+F D
Sbjct: 213 SAGKDGEIXLWNLAAK---KAXYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSLD 266
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 20/184 (10%)
Query: 39 EMINSQTLKG--------HQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKA 90
E IN +T+K H V++ ++ G I+SCG DK ++++ E+ KA
Sbjct: 596 EWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 655
Query: 91 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVK--SVT 148
H+ + A+S ++IA+ S D +WD +G+ T + H +V T
Sbjct: 656 -----HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV--HTYDEHSEQVNCCHFT 708
Query: 149 WSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDD 208
N LAT S D + +W++ ++ EC + H V RF P D +LAS S D
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLNQK---ECRNTMFGHTNSVNHCRFSPDDELLASCSADG 765
Query: 209 TVKL 212
T++L
Sbjct: 766 TLRL 769
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 181 VINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAF 240
V+ H V F +AS D T+++FK + E +K+H V AF
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHEDEVLCCAF 665
Query: 241 DRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCH 300
S +ATCS D VKIW + + K V T H + ++ CH
Sbjct: 666 SSDDSYIATCSADKKVKIW---------------DSATGKLVHTYDEHSEQ----VNCCH 706
Query: 301 LTD-----LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVP 355
T+ L+AT D ++++ N + + M H VN ++P
Sbjct: 707 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF----------GHTNSVNHCRFSP-DD 755
Query: 356 GMLASCSDDGDVKLWQIKLEN 376
+LASCS DG ++LW ++ N
Sbjct: 756 ELLASCSADGTLRLWDVRSAN 776
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/434 (20%), Positives = 152/434 (35%), Gaps = 121/434 (27%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESF---------------------- 82
T+ GH V + ++P +++SC D +RLW S
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 83 ------------GNKFTA----KAILSD------------GHQRTIRETAWSPCGNFIAS 114
G+K K +L D GH TI+ +SP +
Sbjct: 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 115 ASFDATTAVW--DKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWE--- 169
A +W D R +C GH + V V +S +G T S D+++ VWE
Sbjct: 858 ALSQYCVELWNIDSRLKVADC----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913
Query: 170 ---------------VGEEDEYECAAVIN-----------AHIQDVKKVR-----FHPFD 198
V +E+E AV N I + + + P
Sbjct: 914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL 973
Query: 199 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 258
+A D +K+ + F++ H V + F G L + S+D+ +++
Sbjct: 974 EYVAFGDEDGAIKIIELPNNRV----FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV 1029
Query: 259 W-----------------KEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHL 301
W K+++ + + + D K ++G R CH
Sbjct: 1030 WNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT----CHQ 1085
Query: 302 TDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEH--RAHNQDVNCVAWNPVVPGMLA 359
+++ A DA + F + + SFDL+ H + HN V C A++ + G+L
Sbjct: 1086 GTVLSCAISSDATK-FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS--LDGILL 1142
Query: 360 SCSDD-GDVKLWQI 372
+ DD G++++W +
Sbjct: 1143 ATGDDNGEIRIWNV 1156
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 49 HQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPC 108
HQG V + + + T SS DK ++W + K GH +R +A+S
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-----GHNGCVRCSAFSLD 1138
Query: 109 GNFIASASFDATTAVWDKRSGQF 131
G +A+ + +W+ GQ
Sbjct: 1139 GILLATGDDNGEIRIWNVSDGQL 1161
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 20/184 (10%)
Query: 39 EMINSQTLKG--------HQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKA 90
E IN +T+K H V++ ++ G I+SCG DK ++++ E+ KA
Sbjct: 603 EWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 662
Query: 91 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVK--SVT 148
H+ + A+S ++IA+ S D +WD +G+ T + H +V T
Sbjct: 663 -----HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV--HTYDEHSEQVNCCHFT 715
Query: 149 WSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDD 208
N LAT S D + +W++ ++ EC + H V RF P D +LAS S D
Sbjct: 716 NKSNHLLLATGSNDFFLKLWDLNQK---ECRNTMFGHTNSVNHCRFSPDDELLASCSADG 772
Query: 209 TVKL 212
T++L
Sbjct: 773 TLRL 776
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 181 VINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAF 240
V+ H V F +AS D T+++FK + E +K+H V AF
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHEDEVLCCAF 672
Query: 241 DRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCH 300
S +ATCS D VKIW + + K V T H + ++ CH
Sbjct: 673 SSDDSYIATCSADKKVKIW---------------DSATGKLVHTYDEHSEQ----VNCCH 713
Query: 301 LTD-----LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVP 355
T+ L+AT D ++++ N + + M H VN ++P
Sbjct: 714 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF----------GHTNSVNHCRFSP-DD 762
Query: 356 GMLASCSDDGDVKLWQIKLEN 376
+LASCS DG ++LW ++ N
Sbjct: 763 ELLASCSADGTLRLWDVRSAN 783
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 87/434 (20%), Positives = 152/434 (35%), Gaps = 121/434 (27%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESF---------------------- 82
T+ GH V + ++P +++SC D +RLW S
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 83 ------------GNKFTA----KAILSD------------GHQRTIRETAWSPCGNFIAS 114
G+K K +L D GH TI+ +SP +
Sbjct: 805 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 115 ASFDATTAVW--DKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWE--- 169
A +W D R +C GH + V V +S +G T S D+++ VWE
Sbjct: 865 ALSQYCVELWNIDSRLKVADC----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920
Query: 170 ---------------VGEEDEYECAAVIN-----------AHIQDVKKVR-----FHPFD 198
V +E+E AV N I + + + P
Sbjct: 921 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL 980
Query: 199 NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKI 258
+A D +K+ + F++ H V + F G L + S+D+ +++
Sbjct: 981 EYVAFGDEDGAIKIIELPNNRV----FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV 1036
Query: 259 W-----------------KEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHL 301
W K+++ + + + D K ++G R CH
Sbjct: 1037 WNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT----CHQ 1092
Query: 302 TDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEH--RAHNQDVNCVAWNPVVPGMLA 359
+++ A DA + F + + SFDL+ H + HN V C A++ + G+L
Sbjct: 1093 GTVLSCAISSDATK-FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS--LDGILL 1149
Query: 360 SCSDD-GDVKLWQI 372
+ DD G++++W +
Sbjct: 1150 ATGDDNGEIRIWNV 1163
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 49 HQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPC 108
HQG V + + + T SS DK ++W + K GH +R +A+S
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-----GHNGCVRCSAFSLD 1145
Query: 109 GNFIASASFDATTAVWDKRSGQF 131
G +A+ + +W+ GQ
Sbjct: 1146 GILLATGDDNGEIRIWNVSDGQL 1168
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 8/198 (4%)
Query: 64 MISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAV 123
+I S DK+I LW + GH + + S G F S S+D +
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 124 WDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVIN 183
WD +G GH +V SV +S + + + + SRD+++ +W E +Y +
Sbjct: 457 WDLAAGV--STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE 514
Query: 184 AHIQDVKKVRFHP--FDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFD 241
H V VRF P + SAS+D TVK++ + +TL HT V ++A
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR----STLAGHTGYVSTVAVS 570
Query: 242 RIGSRLATCSDDATVKIW 259
GS A+ D V +W
Sbjct: 571 PDGSLCASGGKDGVVLLW 588
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 41 INSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGN-KFTAKAILSDGHQRT 99
++++ GH V +V+++ I S D+ I+LW + G K+T +GH+
Sbjct: 463 VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW--NTLGECKYTISE-GGEGHRDW 519
Query: 100 IRETAWSP--CGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
+ +SP I SAS+D T VW+ + + +TL GH V +V S +G A
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR--STLAGHTGYVSTVAVSPDGSLCA 577
Query: 158 TCSRDKSVWVWEVGEEDE---YECAAVINA 184
+ +D V +W++ E + E +VI+A
Sbjct: 578 SGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 133 CNATLEGHENEVKSV-TWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAV--INAHIQDV 189
T+ H + V ++ T N + + SRDKS+ +W++ ++D+ A + H V
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 190 KKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLAT 249
+ V S S+D ++L+ D A ++ HT V S+AF ++ +
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLW--DLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIVS 489
Query: 250 CSDDATVKIW 259
S D T+K+W
Sbjct: 490 ASRDRTIKLW 499
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 41 INSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTI 100
+ + L GH V +V + G S D +RLW + + + GH + +
Sbjct: 421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW---DLAAGVSTRRFV--GHTKDV 475
Query: 101 RETAWSPCGNFIASASFDATTAVWDKRSGQFECNATL----EGHENEVKSVTWSKN--GQ 154
A+S I SAS D T +W+ EC T+ EGH + V V +S N
Sbjct: 476 LSVAFSLDNRQIVSASRDRTIKLWNTLG---ECKYTISEGGEGHRDWVSCVRFSPNTLQP 532
Query: 155 FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKL 212
+ + S DK+V VW + + + + H V V P ++ AS D V L
Sbjct: 533 TIVSASWDKTVKVWNL---SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 26/155 (16%)
Query: 35 CSRCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSD 94
S C++ TL GH G V V+ +P G++ +S G+D + LW + K + S
Sbjct: 548 LSNCKL--RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW------DLAEGKKLYSL 599
Query: 95 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSG------QFECNATLEGHENEVKSVT 148
I +SP ++ +A+ + +WD S + + A E +N + T
Sbjct: 600 EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658
Query: 149 -----------WSKNGQFLATCSRDKSVWVWEVGE 172
WS +G L + D + VW +G
Sbjct: 659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 52/250 (20%)
Query: 39 EMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQR 98
E +N+ + + +V ++P G +++ ED+ IR+W E+ ++ GH++
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN-----RKIVMILQGHEQ 166
Query: 99 TIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLAT 158
I + P G+ + S S D T +WD R+GQ C+ TL + +G+++A
Sbjct: 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ--CSLTLSIEDGVTTVAVSPGDGKYIAA 224
Query: 159 CSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKA 218
S D++V VW+ E ++ +L E+++
Sbjct: 225 GSLDRAVRVWDS------ETGFLVE---------------------------RLDSENES 251
Query: 219 EADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSV 278
H +V+S+ F R G + + S D +VK+W N + TP++ +
Sbjct: 252 GT---------GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT- 301
Query: 279 WKCVCTLSGH 288
C T GH
Sbjct: 302 --CEVTYIGH 309
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 128/333 (38%), Gaps = 97/333 (29%)
Query: 139 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEE-DEYECAAVINAHIQDVKKVRFHP- 196
GH++ V V + G+ +ATCS D+ + V+++ ++ +E + AH + + +
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 197 -FDNILASASYDDTVKLFKEDKAEAD-----WINFATLKSHTSTVWSLAF--DRIGSRLA 248
+ I+ASASYD TVKL++ED + + W TL +++S+ F +G +LA
Sbjct: 67 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 126
Query: 249 TCSDDATVKIWKEYKPGN------------------------------------------ 266
+D ++++ +P +
Sbjct: 127 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS 186
Query: 267 ---SAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC----HLTDLIATACGDDAIRIF-- 317
A I D L GH I ISW LIAT C D IRIF
Sbjct: 187 ALEQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 245
Query: 318 --KENPEAGDSDMVSFDL--------------------------------VHTEHRAHNQ 343
K +P A + + + ++ + +EH HN
Sbjct: 246 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 305
Query: 344 DVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 376
+V V+WN + +L+S DDG V+LW+ N
Sbjct: 306 EVWSVSWN-LTGTILSSAGDDGKVRLWKATYSN 337
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 49 HQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILS 93
H G VW+VSWN GT++SS G+D +RLW K ++ N+F ++++
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLW-KATYSNEFKCMSVIT 346
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 28/184 (15%)
Query: 183 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL--AF 240
+ H V V + + +A+ S D +K+FK DK ++W + ++H S++ ++ A
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 241 DRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSV----WKCVCTLSGHHGRTIYDI 296
G +A+ S D TVK+W+E PD + W +CTL+ G ++Y +
Sbjct: 66 PEYGRIIASASYDKTVKLWEE----------DPDQEECSGRRWNKLCTLNDSKG-SLYSV 114
Query: 297 SWCHLTDLIATAC-GDDAIRIFKENPEAGDSDMVSFDLVHTEHRA-------HNQDVNCV 348
+ + AC G+D I + E SD+ S+ L +E + H Q C+
Sbjct: 115 KFAPAHLGLKLACLGNDGILRLYDALEP--SDLRSWTLT-SEMKVLSIPPANHLQSDFCL 171
Query: 349 AWNP 352
+W P
Sbjct: 172 SWCP 175
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/238 (18%), Positives = 100/238 (42%), Gaps = 30/238 (12%)
Query: 45 TLKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLWGKE--------SFGNKFTAKAILSD 94
TL +G +++V + P G ++ G D +RL+ + ++ +I
Sbjct: 103 TLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 162
Query: 95 GHQRTIRETAWSPC---GNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSK 151
H ++ +W P +A ++ + + G+ A L GH++ ++S++W+
Sbjct: 163 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP 222
Query: 152 N----GQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-----ILA 202
+ Q +AT +D + ++++ E+ ++ + + FDN + A
Sbjct: 223 SIGRWYQLIATGCKDGRIRIFKITEK--------LSPLASEESLTNSNMFDNSADVDMDA 274
Query: 203 SASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWK 260
D + E ++ + H VWS++++ G+ L++ DD V++WK
Sbjct: 275 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 332
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSD---GHQRTIRETA 104
GH V +V ++ G +++C D++I+++ + K T+ LSD H +I
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLD----KDTSNWELSDSWRAHDSSIVAID 62
Query: 105 W-SP-CGNFIASASFDATTAVWDKRSGQFECNA 135
W SP G IASAS+D T +W++ Q EC+
Sbjct: 63 WASPEYGRIIASASYDKTVKLWEEDPDQEECSG 95
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 15/148 (10%)
Query: 46 LKGHQGRVWNVSWNPQ----GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIR 101
L GH+ + ++SW P +I++ +D IR++ K T K +
Sbjct: 208 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF-------KITEKLSPLASEESLTN 260
Query: 102 ETAWSPCGNFIASASFDATTAVWDKRSGQFECNATL----EGHENEVKSVTWSKNGQFLA 157
+ + A + + +K Q L + H EV SV+W+ G L+
Sbjct: 261 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS 320
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAH 185
+ D V +W+ +E++C +VI A
Sbjct: 321 SAGDDGKVRLWKATYSNEFKCMSVITAQ 348
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 128/333 (38%), Gaps = 97/333 (29%)
Query: 139 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEE-DEYECAAVINAHIQDVKKVRFHP- 196
GH++ V V + G+ +ATCS D+ + V+++ ++ +E + AH + + +
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 197 -FDNILASASYDDTVKLFKEDKAEAD-----WINFATLKSHTSTVWSLAF--DRIGSRLA 248
+ I+ASASYD TVKL++ED + + W TL +++S+ F +G +LA
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128
Query: 249 TCSDDATVKIWKEYKPGN------------------------------------------ 266
+D ++++ +P +
Sbjct: 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS 188
Query: 267 ---SAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC----HLTDLIATACGDDAIRIF-- 317
A I D L GH I ISW LIAT C D IRIF
Sbjct: 189 ALEQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247
Query: 318 --KENPEAGDSDMVSFDL--------------------------------VHTEHRAHNQ 343
K +P A + + + ++ + +EH HN
Sbjct: 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307
Query: 344 DVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 376
+V V+WN + +L+S DDG V+LW+ N
Sbjct: 308 EVWSVSWN-LTGTILSSAGDDGKVRLWKATYSN 339
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 49 HQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILS 93
H G VW+VSWN GT++SS G+D +RLW K ++ N+F ++++
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW-KATYSNEFKCMSVIT 348
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 28/184 (15%)
Query: 183 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL--AF 240
+ H V V + + +A+ S D +K+FK DK ++W + ++H S++ ++ A
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 241 DRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSV----WKCVCTLSGHHGRTIYDI 296
G +A+ S D TVK+W+E PD + W +CTL+ G ++Y +
Sbjct: 68 PEYGRIIASASYDKTVKLWEE----------DPDQEECSGRRWNKLCTLNDSKG-SLYSV 116
Query: 297 SWCHLTDLIATAC-GDDAIRIFKENPEAGDSDMVSFDLVHTEHRA-------HNQDVNCV 348
+ + AC G+D I + E SD+ S+ L +E + H Q C+
Sbjct: 117 KFAPAHLGLKLACLGNDGILRLYDALEP--SDLRSWTLT-SEMKVLSIPPANHLQSDFCL 173
Query: 349 AWNP 352
+W P
Sbjct: 174 SWCP 177
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/238 (18%), Positives = 100/238 (42%), Gaps = 30/238 (12%)
Query: 45 TLKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLWGKE--------SFGNKFTAKAILSD 94
TL +G +++V + P G ++ G D +RL+ + ++ +I
Sbjct: 105 TLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164
Query: 95 GHQRTIRETAWSPC---GNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSK 151
H ++ +W P +A ++ + + G+ A L GH++ ++S++W+
Sbjct: 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP 224
Query: 152 N----GQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-----ILA 202
+ Q +AT +D + ++++ E+ ++ + + FDN + A
Sbjct: 225 SIGRWYQLIATGCKDGRIRIFKITEK--------LSPLASEESLTNSNMFDNSADVDMDA 276
Query: 203 SASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWK 260
D + E ++ + H VWS++++ G+ L++ DD V++WK
Sbjct: 277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSD---GHQRTIRETA 104
GH V +V ++ G +++C D++I+++ + K T+ LSD H +I
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLD----KDTSNWELSDSWRAHDSSIVAID 64
Query: 105 W-SP-CGNFIASASFDATTAVWDKRSGQFECNA 135
W SP G IASAS+D T +W++ Q EC+
Sbjct: 65 WASPEYGRIIASASYDKTVKLWEEDPDQEECSG 97
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 15/148 (10%)
Query: 46 LKGHQGRVWNVSWNPQ----GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIR 101
L GH+ + ++SW P +I++ +D IR++ K T K +
Sbjct: 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF-------KITEKLSPLASEESLTN 262
Query: 102 ETAWSPCGNFIASASFDATTAVWDKRSGQFECNATL----EGHENEVKSVTWSKNGQFLA 157
+ + A + + +K Q L + H EV SV+W+ G L+
Sbjct: 263 SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS 322
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAH 185
+ D V +W+ +E++C +VI A
Sbjct: 323 SAGDDGKVRLWKATYSNEFKCMSVITAQ 350
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 17/253 (6%)
Query: 16 LLPKTIPSTENLTGTNLILCSRCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIR 75
LL + G + + +++ +TL+GH G+V+++ W P+ I S +D +
Sbjct: 32 LLDTDVEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLI 91
Query: 76 LWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWD-----KRSGQ 130
+W + K H + E A++P G +A D+ ++++ R G
Sbjct: 92 VWNALTSQKTHAIKL-----HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGN 146
Query: 131 FECNATLEGHENEVKSVTWSKNGQF-LATCSRDKSVWVWEV--GEEDEYECAAVINAHIQ 187
+ L GH+ S + + + L T S D++ +W+V G+ + + H
Sbjct: 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206
Query: 188 DVKKVRFHPFD-NILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSR 246
DV + + + N+ S S D TV+L+ T H + S+ F G R
Sbjct: 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSR---AVRTYHGHEGDINSVKFFPDGQR 263
Query: 247 LATCSDDATVKIW 259
T SDD T +++
Sbjct: 264 FGTGSDDGTCRLF 276
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 13/184 (7%)
Query: 37 RCEMINSQTLKGHQGRVWNVSWNP-QGTMISSCGEDKNIRLWGKESFGNKFTAKAILS-D 94
R + S+ GH V ++S N M S D +RLW + T++A+ +
Sbjct: 192 RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL-----RITSRAVRTYH 246
Query: 95 GHQRTIRETAWSPCGNFIASASFDATTAVWDKRSG-QFEC-NATLEGHENE---VKSVTW 149
GH+ I + P G + S D T ++D R+G Q + N + ++NE V SV +
Sbjct: 247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306
Query: 150 SKNGQFLATCSRDKSVWVWE-VGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDD 208
S +G+ L + +VW+ + E + N+H + + + L + S+D
Sbjct: 307 SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK 366
Query: 209 TVKL 212
+K+
Sbjct: 367 NLKI 370
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 128/333 (38%), Gaps = 97/333 (29%)
Query: 139 GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEE-DEYECAAVINAHIQDVKKVRFHP- 196
GH++ V V + G+ +ATCS D+ + V+++ ++ +E + AH + + +
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 197 -FDNILASASYDDTVKLFKEDKAEAD-----WINFATLKSHTSTVWSLAF--DRIGSRLA 248
+ I+ASASYD TVKL++ED + + W TL +++S+ F +G +LA
Sbjct: 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128
Query: 249 TCSDDATVKIWKEYKPGN------------------------------------------ 266
+D ++++ +P +
Sbjct: 129 CLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS 188
Query: 267 ---SAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC----HLTDLIATACGDDAIRIF-- 317
A I D L GH I ISW LIAT C D IRIF
Sbjct: 189 ALEQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247
Query: 318 --KENPEAGDSDMVS---FD-----------------------------LVHTEHRAHNQ 343
K +P A + + + FD + +EH HN
Sbjct: 248 TEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307
Query: 344 DVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 376
+V V+WN + +L+S DDG V+LW+ N
Sbjct: 308 EVWSVSWN-LTGTILSSAGDDGKVRLWKATYSN 339
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 49 HQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILS 93
H G VW+VSWN GT++SS G+D +RLW K ++ N+F ++++
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW-KATYSNEFKCXSVIT 348
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 28/184 (15%)
Query: 183 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL--AF 240
+ H V V + + +A+ S D +K+FK DK ++W + ++H S++ ++ A
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 241 DRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSV----WKCVCTLSGHHGRTIYDI 296
G +A+ S D TVK+W+E PD + W +CTL+ G ++Y +
Sbjct: 68 PEYGRIIASASYDKTVKLWEE----------DPDQEECSGRRWNKLCTLNDSKG-SLYSV 116
Query: 297 SWCHLTDLIATAC-GDDAIRIFKENPEAGDSDMVSFDLVHTEHRA-------HNQDVNCV 348
+ + AC G+D I + E SD+ S+ L +E + H Q C+
Sbjct: 117 KFAPAHLGLKLACLGNDGILRLYDALEP--SDLRSWTLT-SEXKVLSIPPANHLQSDFCL 173
Query: 349 AWNP 352
+W P
Sbjct: 174 SWCP 177
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 103/241 (42%), Gaps = 36/241 (14%)
Query: 45 TLKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLWGKE--------SFGNKFTAKAILSD 94
TL +G +++V + P G ++ G D +RL+ + ++ +I
Sbjct: 105 TLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPA 164
Query: 95 GHQRTIRETAWSPC---GNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSK 151
H ++ +W P +A ++ + + G+ A L GH++ ++S++W+
Sbjct: 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP 224
Query: 152 N----GQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYD 207
+ Q +AT +D + ++++ E+ ++ + + FDN SA D
Sbjct: 225 SIGRWYQLIATGCKDGRIRIFKITEK--------LSPLASEESLTNSNXFDN---SADVD 273
Query: 208 DTVKLFK----EDKAEADWINFATLKS----HTSTVWSLAFDRIGSRLATCSDDATVKIW 259
+ E+KAE L S H VWS++++ G+ L++ DD V++W
Sbjct: 274 XDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Query: 260 K 260
K
Sbjct: 334 K 334
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSD---GHQRTIRETA 104
GH V +V ++ G +++C D++I+++ + K T+ LSD H +I
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLD----KDTSNWELSDSWRAHDSSIVAID 64
Query: 105 W-SP-CGNFIASASFDATTAVWDKRSGQFECNA 135
W SP G IASAS+D T +W++ Q EC+
Sbjct: 65 WASPEYGRIIASASYDKTVKLWEEDPDQEECSG 97
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 15/148 (10%)
Query: 46 LKGHQGRVWNVSWNPQ----GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIR 101
L GH+ + ++SW P +I++ +D IR++ K T K +
Sbjct: 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF-------KITEKLSPLASEESLTN 262
Query: 102 ETAWSPCGNFIASASFDATTAVWDKRSGQFECNATL----EGHENEVKSVTWSKNGQFLA 157
+ + A + + +K Q L + H EV SV+W+ G L+
Sbjct: 263 SNXFDNSADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS 322
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAH 185
+ D V +W+ +E++C +VI A
Sbjct: 323 SAGDDGKVRLWKATYSNEFKCXSVITAQ 350
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 23/230 (10%)
Query: 39 EMINSQTLKGHQGRVWNVSWNPQ-GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQ 97
+M TLKGH G V ++ PQ MI S DK I +W + GH
Sbjct: 4 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 63
Query: 98 RTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
+ + S G F S S+D T +WD +G GH +V SV +S + + +
Sbjct: 64 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIV 121
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP--FDNILASASYDDTVKLFKE 215
+ SRDK++ +W +Y +H + V VRF P + I+ S +D VK++
Sbjct: 122 SGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW-- 177
Query: 216 DKAEADWINFATLK------SHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
N A K HT + ++ GS A+ D +W
Sbjct: 178 --------NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP 107
GH V +V+++ I S DK I+LW K+T + + H + +SP
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQ---DESHSEWVSCVRFSP 158
Query: 108 CGN--FIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSV 165
+ I S +D VW+ + + + N GH + +VT S +G A+ +D
Sbjct: 159 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDGQA 216
Query: 166 WVWEVGE 172
+W++ E
Sbjct: 217 MLWDLNE 223
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP 107
GH G + V+ +P G++ +S G+D LW + +T DG I +SP
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-----DGGD-IINALCFSP 243
Query: 108 CGNFIASASFDATTAVWDKRSG-------QFECNATLEGHENEVKSVTWSKNGQFLATCS 160
++ +A+ + +WD Q + + + + S+ WS +GQ L
Sbjct: 244 NRYWLCAAT-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 302
Query: 161 RDKSVWVWEV 170
D V VW+V
Sbjct: 303 TDNLVRVWQV 312
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 59 NPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFD 118
N +I SCG DK +++W + K I GH + SP G+ AS D
Sbjct: 159 NSSNPIIVSCGWDKLVKVWNLANC--KLKTNHI---GHTGYLNTVTVSPDGSLCASGGKD 213
Query: 119 ATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV 170
+WD G+ TL+G + + ++ +S N +L + S+ +W++
Sbjct: 214 GQAMLWDLNEGKHL--YTLDGGD-IINALCFSPNRYWLCAAT-GPSIKIWDL 261
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 23/230 (10%)
Query: 39 EMINSQTLKGHQGRVWNVSWNPQ-GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQ 97
+M TLKGH G V ++ PQ MI S DK I +W + GH
Sbjct: 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 86
Query: 98 RTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
+ + S G F S S+D T +WD +G GH +V SV +S + + +
Sbjct: 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIV 144
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP--FDNILASASYDDTVKLFKE 215
+ SRDK++ +W +Y +H + V VRF P + I+ S +D VK++
Sbjct: 145 SGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW-- 200
Query: 216 DKAEADWINFATLK------SHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
N A K HT + ++ GS A+ D +W
Sbjct: 201 --------NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP 107
GH V +V+++ I S DK I+LW K+T + + H + +SP
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQ---DESHSEWVSCVRFSP 181
Query: 108 CGN--FIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSV 165
+ I S +D VW+ + + + N GH + +VT S +G A+ +D
Sbjct: 182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDGQA 239
Query: 166 WVWEVGE 172
+W++ E
Sbjct: 240 MLWDLNE 246
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP 107
GH G + V+ +P G++ +S G+D LW + +T DG I +SP
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-----DGGD-IINALCFSP 266
Query: 108 CGNFIASASFDATTAVWDKRSG-------QFECNATLEGHENEVKSVTWSKNGQFLATCS 160
++ +A+ + +WD Q + + + + S+ WS +GQ L
Sbjct: 267 NRYWLCAAT-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325
Query: 161 RDKSVWVWEV 170
D V VW+V
Sbjct: 326 TDNLVRVWQV 335
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 59 NPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFD 118
N +I SCG DK +++W + K I GH + SP G+ AS D
Sbjct: 182 NSSNPIIVSCGWDKLVKVWNLANC--KLKTNHI---GHTGYLNTVTVSPDGSLCASGGKD 236
Query: 119 ATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV 170
+WD G+ TL+G + + ++ +S N +L + S+ +W++
Sbjct: 237 GQAMLWDLNEGKHL--YTLDGGD-IINALCFSPNRYWLCAAT-GPSIKIWDL 284
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 15/225 (6%)
Query: 37 RCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGH 96
R +M +TL+GH +++ + W ++ S +D + +W + NK A + S
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-NKVHAIPLRSS-- 109
Query: 97 QRTIRETAWSPCGNFIASASFDATTAVWD--KRSGQFECNATLEGHENEVKSVTWSKNGQ 154
+ A++P GN++A D ++++ R G + L GH + + + Q
Sbjct: 110 --WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 167
Query: 155 FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
+ T S D + +W++ + + H DV + P + S + D + KL+
Sbjct: 168 -IVTSSGDTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW- 222
Query: 215 EDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
D E + T H S + ++ F G+ AT SDDAT +++
Sbjct: 223 -DVREG--MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 264
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 21/221 (9%)
Query: 43 SQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE 102
S+ L GH G + + +++S G D LW E+ T H +
Sbjct: 147 SRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTG-----HTGDVMS 200
Query: 103 TAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRD 162
+ +P S + DA+ +WD R G C T GHE+++ ++ + NG AT S D
Sbjct: 201 LSLAPDTRLFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFATGSDD 258
Query: 163 KSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDD----TVKLFKEDKA 218
+ ++++ + E + N I + V F +L A YDD K D+A
Sbjct: 259 ATCRLFDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRA 316
Query: 219 EADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
L H + V L G +AT S D+ +KIW
Sbjct: 317 -------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 14/206 (6%)
Query: 54 WNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIA 113
W ++++P +++ + ++G ES +++ D + I A+SP G ++A
Sbjct: 126 WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL-----DTRGKFILSIAYSPDGKYLA 180
Query: 114 SASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEE 173
S + D ++D +G+ TLEGH ++S+T+S + Q L T S D + +++V
Sbjct: 181 SGAIDGIINIFDIATGKLL--HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238
Query: 174 DEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTS 233
+ A ++ H V V F P D S+S D +VK++ T H
Sbjct: 239 N---LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC----VHTFFDHQD 291
Query: 234 TVWSLAFDRIGSRLATCSDDATVKIW 259
VW + ++ GS++ + DD + I+
Sbjct: 292 QVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 100/250 (40%), Gaps = 31/250 (12%)
Query: 72 KNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS----PCGNFIASASFDATTAVWDKR 127
+N+ G +G F + H I AW + + S D VW R
Sbjct: 11 ENLYFQGTNQYGILFKQE----QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR 66
Query: 128 SGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQ 187
+ + +LEGH+ V SV S A+ S D + +W++ + + I+A
Sbjct: 67 DERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKS---IDAGPV 123
Query: 188 DVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRL 247
D + F P LA+ ++ V +F + + ++ +L + + S+A+ G L
Sbjct: 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY----SLDTRGKFILSIAYSPDGKYL 179
Query: 248 ATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIAT 307
A+ + D + I+ + + K + TL G H I +++ + L+ T
Sbjct: 180 ASGAIDGIINIF---------------DIATGKLLHTLEG-HAMPIRSLTFSPDSQLLVT 223
Query: 308 ACGDDAIRIF 317
A D I+I+
Sbjct: 224 ASDDGYIKIY 233
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
TL+GH + +++++P ++ + +D I+++ + T GH +
Sbjct: 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-----GHASWVLNV 254
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
A+ P S+S D + VWD G C T H+++V V ++ NG + + D+
Sbjct: 255 AFCPDDTHFVSSSSDKSVKVWD--VGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 312
Query: 164 SVWVWE 169
+ +++
Sbjct: 313 EIHIYD 318
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 15/225 (6%)
Query: 37 RCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGH 96
R +M +TL+GH +++ + W ++ S +D + +W + NK A + S
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-NKVHAIPLRSS-- 98
Query: 97 QRTIRETAWSPCGNFIASASFDATTAVWD--KRSGQFECNATLEGHENEVKSVTWSKNGQ 154
+ A++P GN++A D ++++ R G + L GH + + + Q
Sbjct: 99 --WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 155 FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
+ T S D + +W++ + + H DV + P + S + D + KL+
Sbjct: 157 -IVTSSGDTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 215 EDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
+ + T H S + ++ F G+ AT SDDAT +++
Sbjct: 213 VREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 21/221 (9%)
Query: 43 SQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE 102
S+ L GH G + + +++S G D LW E+ T H +
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTG-----HTGDVMS 189
Query: 103 TAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRD 162
+ +P S + DA+ +WD R G C T GHE+++ ++ + NG AT S D
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 163 KSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDD----TVKLFKEDKA 218
+ ++++ + E + N I + V F +L A YDD K D+A
Sbjct: 248 ATCRLFDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRA 305
Query: 219 EADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
L H + V L G +AT S D+ +KIW
Sbjct: 306 -------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 15/225 (6%)
Query: 37 RCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGH 96
R +M +TL+GH +++ + W ++ S +D + +W + NK A + S
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-NKVHAIPLRSS-- 98
Query: 97 QRTIRETAWSPCGNFIASASFDATTAVWD--KRSGQFECNATLEGHENEVKSVTWSKNGQ 154
+ A++P GN++A D ++++ R G + L GH + + + Q
Sbjct: 99 --WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 155 FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
+ T S D + +W++ + + H DV + P + S + D + KL+
Sbjct: 157 -IVTSSGDTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW- 211
Query: 215 EDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
D E + T H S + ++ F G+ AT SDDAT +++
Sbjct: 212 -DVREG--MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 21/221 (9%)
Query: 43 SQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE 102
S+ L GH G + + +++S G D LW E+ T H +
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTG-----HTGDVMS 189
Query: 103 TAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRD 162
+ +P S + DA+ +WD R G C T GHE+++ ++ + NG AT S D
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 163 KSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDD----TVKLFKEDKA 218
+ ++++ + E + N I + V F +L A YDD K D+A
Sbjct: 248 ATCRLFDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRA 305
Query: 219 EADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
L H + V L G +AT S D+ +KIW
Sbjct: 306 -------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 15/225 (6%)
Query: 37 RCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGH 96
R +M +TL+GH +++ + W ++ S +D + +W + NK A + S
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-NKVHAIPLRSS-- 98
Query: 97 QRTIRETAWSPCGNFIASASFDATTAVWD--KRSGQFECNATLEGHENEVKSVTWSKNGQ 154
+ A++P GN++A D ++++ R G + L GH + + + Q
Sbjct: 99 --WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 155 FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
+ T S D + +W++ + + H DV + P + S + D + KL+
Sbjct: 157 -IVTSSGDTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 215 EDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
+ + T H S + ++ F G+ AT SDDAT +++
Sbjct: 213 VREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 21/221 (9%)
Query: 43 SQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE 102
S+ L GH G + + +++S G D LW E+ T H +
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTG-----HTGDVMS 189
Query: 103 TAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRD 162
+ +P S + DA+ +WD R G C T GHE+++ ++ + NG AT S D
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 163 KSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDD----TVKLFKEDKA 218
+ ++++ + E + N I + V F +L A YDD K D+A
Sbjct: 248 ATCRLFDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRA 305
Query: 219 EADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
L H + V L G +AT S D+ +KIW
Sbjct: 306 -------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 15/225 (6%)
Query: 37 RCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGH 96
R +M +TL+GH +++ + W ++ S +D + +W + NK A + S
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHAIPLRSS-- 98
Query: 97 QRTIRETAWSPCGNFIASASFDATTAVWD--KRSGQFECNATLEGHENEVKSVTWSKNGQ 154
+ A++P GN++A D ++++ R G + L GH + + + Q
Sbjct: 99 --WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 155 FLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
+ T S D + +W++ + + H DV + P + S + D + KL+
Sbjct: 157 -IVTSSGDTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 215 EDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
+ + T H S + ++ F G+ AT SDDAT +++
Sbjct: 213 VREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 90/221 (40%), Gaps = 21/221 (9%)
Query: 43 SQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE 102
S+ L GH G + + +++S G D LW E+ T H +
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTG-----HTGDVMS 189
Query: 103 TAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRD 162
+ +P S + DA+ +WD R G C T GHE+++ ++ + NG AT S D
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFATGSDD 247
Query: 163 KSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDD----TVKLFKEDKA 218
+ ++++ + E + N I + V F +L A YDD K D+A
Sbjct: 248 ATCRLFDLRADQELMTYSHDNI-ICGITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRA 305
Query: 219 EADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
L H + V L G +AT S D+ +KIW
Sbjct: 306 -------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 37/283 (13%)
Query: 62 GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS--PCGNFIASASFDA 119
G +++C DK I+++ E +K GH+ + W+ G +AS S+D
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDG 77
Query: 120 TTAVWDKRSGQFECNATLEGHENEVKSVTWSKN--GQFLATCSRDKSVWVWEVGEEDEYE 177
+W + +G++ A H V SV W+ + G L S D V V E +E+
Sbjct: 78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF-KENGTT 136
Query: 178 CAAVINAHIQDVKKVRFHPF-------------DNILASASYDDTVKLFKEDKAEADWIN 224
+I+AH V + P + D+ VK++K + ++
Sbjct: 137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196
Query: 225 FATLKSHTSTVWSLAFDR---IGSRLATCSDDATVKIWKEYKPGNSAGIPTPDND-SVWK 280
+TL+ H+ V +A+ + S LA+ S D T IW T DN+ WK
Sbjct: 197 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW------------TQDNEQGPWK 244
Query: 281 CVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEA 323
++ SW +++A + GD+ + ++KEN E
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 25/243 (10%)
Query: 45 TLKGHQGRVWNVSW-NPQ-GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE 102
TL GH+G VW V W +P+ GT+++SC D + +W +E N ++ + H ++
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE---NGRWSQIAVHAVHSASVNS 104
Query: 103 TAWSP--CGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW----------- 149
W+P G + AS D +V + + ++ H V S +W
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 150 --SKNGQFLATCSRDKSVWVWEVGEEDE-YECAAVINAHIQDVKKVRFHP---FDNILAS 203
+K + T D V +W+ + + Y + + H V+ V + P + LAS
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 204 ASYDDTVKLFKEDKAEADWIN-FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEY 262
S D T ++ +D + W + +W ++ G+ LA D V +WKE
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Query: 263 KPG 265
G
Sbjct: 285 LEG 287
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 31/252 (12%)
Query: 91 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS 150
++++ H I + G +A+ S D T +++ + TL GHE V V W+
Sbjct: 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 151 --KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF--HPFDNILASASY 206
K G LA+CS D V +W+ E + AV H V V++ H + +L AS
Sbjct: 63 HPKFGTILASCSYDGKVLIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121
Query: 207 DDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAF---------DRIGSRLATCSDDAT 255
D V + FKE+ + I A S W+ A + + T D
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 256 VKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCH---LTDLIATACGDD 312
VKIWK + + + TL G H + D++W L +A+ D
Sbjct: 182 VKIWKYNSDAQTYVLES-----------TLEG-HSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 313 AIRIFKENPEAG 324
I+ ++ E G
Sbjct: 230 TCIIWTQDNEQG 241
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 25/147 (17%)
Query: 230 SHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHH 289
+H + D G RLATCS D T+KI++ + K + TL+GH
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------KLIDTLTGHE 53
Query: 290 GRTIYDISWCH--LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 347
G ++ + W H ++A+ D + I+KE E G ++ H H+ VN
Sbjct: 54 G-PVWRVDWAHPKFGTILASCSYDGKVLIWKE--ENGRWSQIAV------HAVHSASVNS 104
Query: 348 VAWNPVVPG-MLASCSDDGDVKLWQIK 373
V W P G +L S DG V + + K
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVSVVEFK 131
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 69 GEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP---CGNFIASASFDATTAVWD 125
G D +++W S + ++ L +GH +R+ AWSP +++AS S D T +W
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
Query: 126 KRSGQFECNATL---EGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVI 182
+ + Q TL E + + +WS +G LA D V +W+ E ++E A +
Sbjct: 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
Query: 183 N 183
+
Sbjct: 296 H 296
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 25/243 (10%)
Query: 45 TLKGHQGRVWNVSW-NPQ-GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE 102
TL GH+G VW V W +P+ GT+++SC D + +W +E N ++ + H ++
Sbjct: 50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE---NGRWSQIAVHAVHSASVNS 106
Query: 103 TAWSP--CGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW----------- 149
W+P G + AS D +V + + ++ H V S +W
Sbjct: 107 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166
Query: 150 --SKNGQFLATCSRDKSVWVWEVGEEDE-YECAAVINAHIQDVKKVRFHP---FDNILAS 203
+K + T D V +W+ + + Y + + H V+ V + P + LAS
Sbjct: 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226
Query: 204 ASYDDTVKLFKEDKAEADWIN-FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEY 262
S D T ++ +D + W + +W ++ G+ LA D V +WKE
Sbjct: 227 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286
Query: 263 KPG 265
G
Sbjct: 287 LEG 289
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 37/283 (13%)
Query: 62 GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS--PCGNFIASASFDA 119
G +++C DK I+++ E +K GH+ + W+ G +AS S+D
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDG 79
Query: 120 TTAVWDKRSGQFECNATLEGHENEVKSVTWSKN--GQFLATCSRDKSVWVWEVGEEDEYE 177
+W + +G++ A H V SV W+ + G L S D V V E +E+
Sbjct: 80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF-KENGTT 138
Query: 178 CAAVINAHIQDVKKVRFHPF-------------DNILASASYDDTVKLFKEDKAEADWIN 224
+I+AH V + P + D+ VK++K + ++
Sbjct: 139 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 198
Query: 225 FATLKSHTSTVWSLAFDR---IGSRLATCSDDATVKIWKEYKPGNSAGIPTPDND-SVWK 280
+TL+ H+ V +A+ + S LA+ S D T IW T DN+ WK
Sbjct: 199 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW------------TQDNEQGPWK 246
Query: 281 CVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEA 323
++ SW +++A + GD+ + ++KEN E
Sbjct: 247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 16/185 (8%)
Query: 91 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS 150
++++ H I + G +A+ S D T +++ + TL GHE V V W+
Sbjct: 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 64
Query: 151 --KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF--HPFDNILASASY 206
K G LA+CS D V +W+ E + AV H V V++ H + +L AS
Sbjct: 65 HPKFGTILASCSYDGKVLIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 123
Query: 207 DDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAF---------DRIGSRLATCSDDAT 255
D V + FKE+ + I A S W+ A + + T D
Sbjct: 124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183
Query: 256 VKIWK 260
VKIWK
Sbjct: 184 VKIWK 188
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 25/147 (17%)
Query: 230 SHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHH 289
+H + D G RLATCS D T+KI++ K + TL+GH
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-------------EGETHKLIDTLTGHE 55
Query: 290 GRTIYDISWCH--LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 347
G ++ + W H ++A+ D + I+KE E G ++ H H+ VN
Sbjct: 56 G-PVWRVDWAHPKFGTILASCSYDGKVLIWKE--ENGRWSQIAV------HAVHSASVNS 106
Query: 348 VAWNPVVPG-MLASCSDDGDVKLWQIK 373
V W P G +L S DG V + + K
Sbjct: 107 VQWAPHEYGPLLLVASSDGKVSVVEFK 133
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 69 GEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP---CGNFIASASFDATTAVWD 125
G D +++W S + ++ L +GH +R+ AWSP +++AS S D T +W
Sbjct: 179 GADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237
Query: 126 KRSGQFECNATL---EGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVI 182
+ + Q TL E + + +WS +G LA D V +W+ E ++E A +
Sbjct: 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 297
Query: 183 N 183
+
Sbjct: 298 H 298
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 31/232 (13%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWG-----KESFGNKFTAKAILSDGHQRTIRE 102
GHQ V++V+++P I S G ++ I+LW K S K +S I +
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 103 TA--WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCS 160
+A P + AS +D VW+ F+ T + HE+ V ++ S NG+++AT
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGKYIATGG 232
Query: 161 RDKSVWVWEV----GEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK-- 214
+DK + +W++ + E++ + IN ++ F+P +A + D VK+F
Sbjct: 233 KDKKLLIWDILNLTYPQREFDAGSTIN-------QIAFNPKLQWVAVGT-DQGVKIFNLM 284
Query: 215 -EDKA-----EADWINFAT-LKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
+ KA EA+ I A K SLA++ +G +L D ++ +
Sbjct: 285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 124/329 (37%), Gaps = 58/329 (17%)
Query: 59 NPQGTMISSCGEDKNIRLWG--KESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASAS 116
N ++ S DK + +W +E F GH + + A S F S+S
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 117 FDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEY 176
+D T +WD R+G GH++EV SV +S + + + + ++ + +W + E ++
Sbjct: 96 WDKTLRLWDLRTGT--TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF 153
Query: 177 ECAAVINAHIQDVKKVRF----------HPFDNILASASYDDTVKLFKEDKAEADWINFA 226
A N H V VR+ PF AS +D +K++ NF
Sbjct: 154 SSAEKEN-HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN--------TNFQ 204
Query: 227 ---TLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW---------KEYKPGNSAGIPTPD 274
T K+H S V L+ G +AT D + IW +E+ G++ +
Sbjct: 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFN 264
Query: 275 NDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLV 334
W V T G I+++ +T A C +A I K + G
Sbjct: 265 PKLQWVAVGT---DQGVKIFNL----MTQSKAPVCTIEAEPITKAEGQKGK--------- 308
Query: 335 HTEHRAHNQDVNCVAWNPVVPGMLASCSD 363
N +AWN + + A +D
Sbjct: 309 -------NPQCTSLAWNALGKKLFAGFTD 330
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW 77
T K H+ V ++S +P G I++ G+DK + +W
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 25/243 (10%)
Query: 45 TLKGHQGRVWNVSW-NPQ-GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE 102
TL GH+G VW V W +P+ GT+++SC D + +W +E N ++ + H ++
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE---NGRWSQIAVHAVHSASVNS 104
Query: 103 TAWSP--CGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW----------- 149
W+P G + AS D +V + + ++ H V S +W
Sbjct: 105 VQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 150 --SKNGQFLATCSRDKSVWVWEVGEEDE-YECAAVINAHIQDVKKVRFHP---FDNILAS 203
+K + T D V +W+ + + Y + + H V+ V + P + +AS
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224
Query: 204 ASYDDTVKLFKEDKAEADWIN-FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEY 262
S D T ++ +D + W + +W ++ G+ LA D V +WKE
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Query: 263 KPG 265
G
Sbjct: 285 LEG 287
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 37/283 (13%)
Query: 62 GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS--PCGNFIASASFDA 119
G +++C DK I+++ E +K GH+ + W+ G +AS S+D
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDG 77
Query: 120 TTAVWDKRSGQFECNATLEGHENEVKSVTWSKN--GQFLATCSRDKSVWVWEVGEEDEYE 177
+W + +G++ A H V SV W+ + G L S D V V E +E+
Sbjct: 78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF-KENGTT 136
Query: 178 CAAVINAHIQDVKKVRFHPF-------------DNILASASYDDTVKLFKEDKAEADWIN 224
+I+AH V + P + D+ VK++K + ++
Sbjct: 137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196
Query: 225 FATLKSHTSTVWSLAFDR---IGSRLATCSDDATVKIWKEYKPGNSAGIPTPDND-SVWK 280
+TL+ H+ V +A+ + S +A+ S D T IW T DN+ WK
Sbjct: 197 ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW------------TQDNEQGPWK 244
Query: 281 CVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEA 323
++ SW +++A + GD+ + ++KEN E
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 25/147 (17%)
Query: 230 SHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHH 289
+H + D G R+ATCS D T+KI++ + K + TL+GH
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-------------KLIDTLTGHE 53
Query: 290 GRTIYDISWCH--LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 347
G ++ + W H ++A+ D + I+KE E G ++ H H+ VN
Sbjct: 54 G-PVWRVDWAHPKFGTILASCSYDGKVMIWKE--ENGRWSQIAV------HAVHSASVNS 104
Query: 348 VAWNPVVPG-MLASCSDDGDVKLWQIK 373
V W P G ML S DG V + + K
Sbjct: 105 VQWAPHEYGPMLLVASSDGKVSVVEFK 131
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 31/252 (12%)
Query: 91 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS 150
++++ H I + G +A+ S D T +++ + TL GHE V V W+
Sbjct: 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 151 --KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF--HPFDNILASASY 206
K G LA+CS D V +W+ E + AV H V V++ H + +L AS
Sbjct: 63 HPKFGTILASCSYDGKVMIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS 121
Query: 207 DDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAF---------DRIGSRLATCSDDAT 255
D V + FKE+ + I A S W+ A + + T D
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 256 VKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCH---LTDLIATACGDD 312
VKIWK + + + TL G H + D++W L +A+ D
Sbjct: 182 VKIWKYNSDAQTYVLES-----------TLEG-HSDWVRDVAWSPTVLLRSYMASVSQDR 229
Query: 313 AIRIFKENPEAG 324
I+ ++ E G
Sbjct: 230 TCIIWTQDNEQG 241
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 69 GEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP---CGNFIASASFDATTAVWD 125
G D +++W S + ++ L +GH +R+ AWSP +++AS S D T +W
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235
Query: 126 KRSGQFECNATL---EGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVI 182
+ + Q TL E + + +WS +G LA D V +W+ E ++E A +
Sbjct: 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
Query: 183 N 183
+
Sbjct: 296 H 296
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 25/243 (10%)
Query: 45 TLKGHQGRVWNVSW-NPQ-GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE 102
TL GH+G VW V W +P+ GT+++SC D + +W +E N ++ + H ++
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE---NGRWSQIAVHAVHSASVNS 104
Query: 103 TAWSP--CGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW----------- 149
W+P G + AS D +V + + ++ H V S +W
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 150 --SKNGQFLATCSRDKSVWVWEVGEEDE-YECAAVINAHIQDVKKVRFHP---FDNILAS 203
+K + T D V +W+ + + Y + + H V+ V + P + LAS
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 204 ASYDDTVKLFKEDKAEADWIN-FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEY 262
S D T ++ +D + W + +W ++ G+ LA D V +WKE
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Query: 263 KPG 265
G
Sbjct: 285 LEG 287
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 120/297 (40%), Gaps = 37/297 (12%)
Query: 48 GHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS- 106
H + + + G +++C DK I+++ E +K GH+ + W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAH 63
Query: 107 -PCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKN--GQFLATCSRDK 163
G +AS S+D +W + +G++ A H V SV W+ + G L S D
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123
Query: 164 SVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPF-------------DNILASASYDDTV 210
V V E +E+ +I+AH V + P + D+ V
Sbjct: 124 KVSVVEF-KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 211 KLFKEDKAEADWINFATLKSHTSTVWSLAFD---RIGSRLATCSDDATVKIWKEYKPGNS 267
K++K + ++ +TL+ H+ V +A+ + S LA+ S D T IW
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW-------- 234
Query: 268 AGIPTPDNDS-VWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEA 323
T DN+ WK ++ SW +++A + GD+ + ++KEN E
Sbjct: 235 ----TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 25/147 (17%)
Query: 230 SHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHH 289
+H + D G RLATCS D T+KI++ K + TL+GH
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-------------EGETHKLIDTLTGHE 53
Query: 290 GRTIYDISWCH--LTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNC 347
G ++ + W H ++A+ D + I+KE E G ++ H H+ VN
Sbjct: 54 G-PVWRVDWAHPKFGTILASCSYDGKVLIWKE--ENGRWSQIAV------HAVHSASVNS 104
Query: 348 VAWNPVVPG-MLASCSDDGDVKLWQIK 373
V W P G +L S DG V + + K
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVSVVEFK 131
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 100/253 (39%), Gaps = 31/253 (12%)
Query: 90 AILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW 149
++++ H I + G +A+ S D T +++ + TL GHE V V W
Sbjct: 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW 61
Query: 150 S--KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF--HPFDNILASAS 205
+ K G LA+CS D V +W+ E + AV H V V++ H + +L AS
Sbjct: 62 AHPKFGTILASCSYDGKVLIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS 120
Query: 206 YDDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAF---------DRIGSRLATCSDDA 254
D V + FKE+ + I A S W+ A + + T D
Sbjct: 121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 255 TVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW---CHLTDLIATACGD 311
VKIWK + + + TL G H + D++W L +A+ D
Sbjct: 181 LVKIWKYNSDAQTYVLES-----------TLEG-HSDWVRDVAWSPTVLLRSYLASVSQD 228
Query: 312 DAIRIFKENPEAG 324
I+ ++ E G
Sbjct: 229 RTCIIWTQDNEQG 241
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 69 GEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP---CGNFIASASFDATTAVWD 125
G D +++W S + ++ L +GH +R+ AWSP +++AS S D T +W
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
Query: 126 KRSGQFECNATL---EGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVI 182
+ + Q TL E + + +WS +G LA D V +W+ E ++E A +
Sbjct: 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
Query: 183 N 183
+
Sbjct: 296 H 296
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 42 NSQTLKGHQGRVWNVSWNPQG-TMISSCGEDKNIRLWGKESFGNKFTAK--AILSDGHQR 98
N + GH V +++W P +I+S ED + +W G + I +GH +
Sbjct: 73 NVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 99 TIRETAWSPCG-NFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
+ AW P N + SA D VWD +G + H + + SV WS++G +
Sbjct: 133 RVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192
Query: 158 TCSRDKSVWVWE 169
T RDK V V E
Sbjct: 193 TSCRDKRVRVIE 204
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 11/214 (5%)
Query: 31 NLILCSRCEMINSQTLKGHQGRVWNVSWNPQG-TMISSCGEDKNIRLWGKESFGNKFTAK 89
L+L R +I TL+GH RV V+W+P ++ S G D I +W G
Sbjct: 115 GLVLPLREPVI---TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVW---DVGTGAAVL 168
Query: 90 AILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW 149
+ D H TI WS G I ++ D V + R G +
Sbjct: 169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228
Query: 150 SKNGQFLAT-CSR--DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASY 206
G+ L T SR ++ V +W+ +E ++ V F P NI+
Sbjct: 229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS-SGVLLPFFDPDTNIVYLCGK 287
Query: 207 DDTVKLFKEDKAEADWINFATLKSHTSTVWSLAF 240
D+ + E +EA ++++ ++ S + + +
Sbjct: 288 GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGY 321
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 270 IPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMV 329
+P V K V + GH + DI+W D + + +D + E P+ G +
Sbjct: 62 LPLGKTGRVDKNVPLVXGHTA-PVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120
Query: 330 SFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 372
++ E H + V VAW+P +L S D + +W +
Sbjct: 121 REPVITLE--GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 19/147 (12%)
Query: 179 AAVINAHIQDVKKVRFHPF-DNILASASYDDTVKLFK-EDKAEADWIN--FATLKSHTST 234
++ H V + + P DN++AS S D TV +++ D + TL+ HT
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 235 VWSLAFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTI 293
V +A+ L + D + +W G A + T D H TI
Sbjct: 134 VGIVAWHPTAQNVLLSAGXDNVILVWDV---GTGAAVLTLGPDV-----------HPDTI 179
Query: 294 YDISWCHLTDLIATACGDDAIRIFKEN 320
Y + W LI T+C D +R+ +
Sbjct: 180 YSVDWSRDGALICTSCRDKRVRVIEPR 206
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 25/243 (10%)
Query: 45 TLKGHQGRVWNVSW-NPQ-GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRE 102
TL GH+G VW V W +P+ GT+++SC D + +W +E N ++ + H ++
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEE---NGRWSQIAVHAVHSASVNS 104
Query: 103 TAWSP--CGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW----------- 149
W+P G + AS D +V + + ++ H V S +W
Sbjct: 105 VQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 150 --SKNGQFLATCSRDKSVWVWEVGEEDE-YECAAVINAHIQDVKKVRFHP---FDNILAS 203
+K + T D V +W+ + + Y + + H V+ V + P + AS
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXAS 224
Query: 204 ASYDDTVKLFKEDKAEADWIN-FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEY 262
S D T ++ +D + W + +W ++ G+ LA D V +WKE
Sbjct: 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Query: 263 KPG 265
G
Sbjct: 285 LEG 287
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 114/283 (40%), Gaps = 37/283 (13%)
Query: 62 GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS--PCGNFIASASFDA 119
G ++C DK I+++ E +K GH+ + W+ G +AS S+D
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDG 77
Query: 120 TTAVWDKRSGQFECNATLEGHENEVKSVTWSKN--GQFLATCSRDKSVWVWEVGEEDEYE 177
+W + +G++ A H V SV W+ + G L S D V V E +E+
Sbjct: 78 KVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEF-KENGTT 136
Query: 178 CAAVINAHIQDVKKVRFHPF-------------DNILASASYDDTVKLFKEDKAEADWIN 224
+I+AH V + P + D+ VK++K + ++
Sbjct: 137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196
Query: 225 FATLKSHTSTVWSLAFDR---IGSRLATCSDDATVKIWKEYKPGNSAGIPTPDND-SVWK 280
+TL+ H+ V +A+ + S A+ S D T IW T DN+ WK
Sbjct: 197 ESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIW------------TQDNEQGPWK 244
Query: 281 CVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEA 323
++ SW +++A + GD+ + ++KEN E
Sbjct: 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 91 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS 150
++++ H I + G A+ S D T +++ + TL GHE V V W+
Sbjct: 3 VIANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 151 --KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRF--HPFDNILASASY 206
K G LA+CS D V +W+ E + AV H V V++ H + L AS
Sbjct: 63 HPKFGTILASCSYDGKVXIWK-EENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASS 121
Query: 207 DDTVKL--FKEDKAEADWINFATLKSHTSTVWSLAF---------DRIGSRLATCSDDAT 255
D V + FKE+ + I A S W+ A + + T D
Sbjct: 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 256 VKIWK 260
VKIWK
Sbjct: 182 VKIWK 186
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 69 GEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP---CGNFIASASFDATTAVWD 125
G D +++W S + ++ L +GH +R+ AWSP ++ AS S D T +W
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWT 235
Query: 126 KRSGQFECNATL---EGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVI 182
+ + Q TL E + + +WS +G LA D V +W+ E ++E A +
Sbjct: 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEV 295
Query: 183 N 183
+
Sbjct: 296 H 296
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 283 CTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHN 342
++ H I+D + AT D I+IF+ E + L+ T H
Sbjct: 2 VVIANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGE-------THKLIDTL-TGHE 53
Query: 343 QDVNCVAW-NPVVPGMLASCSDDGDVKLWQ 371
V V W +P +LASCS DG V +W+
Sbjct: 54 GPVWRVDWAHPKFGTILASCSYDGKVXIWK 83
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 42 NSQTLKGHQGRVWNVSWNPQG-TMISSCGEDKNIRLWGKESFGNKFTAK--AILSDGHQR 98
N + GH V +++W P +I+S ED + +W G + I +GH +
Sbjct: 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 99 TIRETAWSPCG-NFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
+ AW P N + SA D VWD +G + H + + SV WS++G +
Sbjct: 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192
Query: 158 TCSRDKSVWVWE 169
T RDK V V E
Sbjct: 193 TSCRDKRVRVIE 204
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 83/214 (38%), Gaps = 11/214 (5%)
Query: 31 NLILCSRCEMINSQTLKGHQGRVWNVSWNPQG-TMISSCGEDKNIRLWGKESFGNKFTAK 89
L+L R +I TL+GH RV V+W+P ++ S G D I +W G
Sbjct: 115 GLVLPLREPVI---TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW---DVGTGAAVL 168
Query: 90 AILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW 149
+ D H TI WS G I ++ D V + R G +
Sbjct: 169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228
Query: 150 SKNGQFLAT-CSR--DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASY 206
G+ L T SR ++ V +W+ +E ++ V F P NI+
Sbjct: 229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS-SGVLLPFFDPDTNIVYLCGK 287
Query: 207 DDTVKLFKEDKAEADWINFATLKSHTSTVWSLAF 240
D+ + E +EA ++++ ++ S + + +
Sbjct: 288 GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGY 321
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 270 IPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMV 329
+P V K V + GH + DI+WC D + + +D + E P+ G +
Sbjct: 62 LPLGKTGRVDKNVPLVCGHTA-PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL 120
Query: 330 SFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 372
++ E H + V VAW+P +L S D + +W +
Sbjct: 121 REPVITLE--GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 198 DNILASASYDDTVKLFK-EDKAEADWIN--FATLKSHTSTVWSLAFDRIGSR-LATCSDD 253
DN++AS S D TV +++ D + TL+ HT V +A+ L + D
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153
Query: 254 ATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDA 313
+ +W G A + T D H TIY + W LI T+C D
Sbjct: 154 NVILVWDV---GTGAAVLTLGPDV-----------HPDTIYSVDWSRDGALICTSCRDKR 199
Query: 314 IRIFKEN 320
+R+ +
Sbjct: 200 VRVIEPR 206
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 112/278 (40%), Gaps = 20/278 (7%)
Query: 36 SRCEMINSQTLKGHQGRVWNVSWNPQGT-MISSCGEDKNIRLWGKESFGNKFTAKA---- 90
S C I + H+G V + PQ +I++ ++ ++ +K
Sbjct: 114 SVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQP 173
Query: 91 -ILSDGHQRTIRETAWSPCGN-FIASASFDATTAVWD-----KRSGQFECNATLEGHENE 143
+ GHQ+ +W+P N ++ SAS D T +WD K + GH
Sbjct: 174 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV 233
Query: 144 VKSVTWSK-NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-IL 201
V+ V W + + + D+ + +W+ + + + ++AH +V + F+P+ IL
Sbjct: 234 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 293
Query: 202 ASASYDDTVKLFKEDKAEADWINFATLKSHTSTV-WSLAFDRIGSRLATCSDDATVKIWK 260
A+ S D TV L+ + +F + K V WS + I LA+ D + +W
Sbjct: 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI---LASSGTDRRLHVWD 350
Query: 261 EYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW 298
K G T D + + + G H I D SW
Sbjct: 351 LSKIGEEQS--TEDAEDGPPELLFIHGGHTAKISDFSW 386
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 110/262 (41%), Gaps = 38/262 (14%)
Query: 128 SGQFECNATLEGHENEVKSVTWSKN-GQFLATCSRDKSVWVWEVG----EEDEYECAAVI 182
SG+ + + L GH+ E ++W+ N +L + S D ++ +W++ E + +
Sbjct: 168 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 227
Query: 183 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDR 242
H V+ V +H L + DD + + + T+ +HT+ V L+F+
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 287
Query: 243 IGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC-H 300
LAT S D TV +W D ++ + + H I+ + W H
Sbjct: 288 YSEFILATGSADKTVALW--------------DLRNLKLKLHSFESHKDE-IFQVQWSPH 332
Query: 301 LTDLIATACGDDAIRIF----------KENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAW 350
++A++ D + ++ E+ E G +++ H H ++ +W
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI------HGGHTAKISDFSW 386
Query: 351 NPVVPGMLASCSDDGDVKLWQI 372
NP P ++ S S+D +++WQ+
Sbjct: 387 NPNEPWIICSVSEDNIMQVWQM 408
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 228 LKSHTSTVWSLAFD-RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLS 286
L+ H + L+++ + L + SDD T+ +W TP V +
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA--------TPKEHRVIDAKNIFT 228
Query: 287 GHHGRTIYDISWCHLTDLIATACGDDAIRIF---KENPEAGDSDMVSFDLVHTEHRAHNQ 343
GH + D++W L + + + DD + + N + S V AH
Sbjct: 229 GHTA-VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD---------AHTA 278
Query: 344 DVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
+VNC+++NP +LA+ S D V LW ++
Sbjct: 279 EVNCLSFNPYSEFILATGSADKTVALWDLR 308
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 112/278 (40%), Gaps = 20/278 (7%)
Query: 36 SRCEMINSQTLKGHQGRVWNVSWNPQGT-MISSCGEDKNIRLWGKESFGNKFTAKA---- 90
S C I + H+G V + PQ +I++ ++ ++ +K
Sbjct: 116 SVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQP 175
Query: 91 -ILSDGHQRTIRETAWSPCGN-FIASASFDATTAVWD-----KRSGQFECNATLEGHENE 143
+ GHQ+ +W+P N ++ SAS D T +WD K + GH
Sbjct: 176 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV 235
Query: 144 VKSVTWSK-NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-IL 201
V+ V W + + + D+ + +W+ + + + ++AH +V + F+P+ IL
Sbjct: 236 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 295
Query: 202 ASASYDDTVKLFKEDKAEADWINFATLKSHTSTV-WSLAFDRIGSRLATCSDDATVKIWK 260
A+ S D TV L+ + +F + K V WS + I LA+ D + +W
Sbjct: 296 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI---LASSGTDRRLHVWD 352
Query: 261 EYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW 298
K G T D + + + G H I D SW
Sbjct: 353 LSKIGEEQS--TEDAEDGPPELLFIHGGHTAKISDFSW 388
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 110/262 (41%), Gaps = 38/262 (14%)
Query: 128 SGQFECNATLEGHENEVKSVTWSKN-GQFLATCSRDKSVWVWEVG----EEDEYECAAVI 182
SG+ + + L GH+ E ++W+ N +L + S D ++ +W++ E + +
Sbjct: 170 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 229
Query: 183 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDR 242
H V+ V +H L + DD + + + T+ +HT+ V L+F+
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 289
Query: 243 IGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC-H 300
LAT S D TV +W D ++ + + H I+ + W H
Sbjct: 290 YSEFILATGSADKTVALW--------------DLRNLKLKLHSFESHKDE-IFQVQWSPH 334
Query: 301 LTDLIATACGDDAIRIF----------KENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAW 350
++A++ D + ++ E+ E G +++ H H ++ +W
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI------HGGHTAKISDFSW 388
Query: 351 NPVVPGMLASCSDDGDVKLWQI 372
NP P ++ S S+D +++WQ+
Sbjct: 389 NPNEPWIICSVSEDNIMQVWQM 410
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 228 LKSHTSTVWSLAFD-RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLS 286
L+ H + L+++ + L + SDD T+ +W TP V +
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA--------TPKEHRVIDAKNIFT 230
Query: 287 GHHGRTIYDISWCHLTDLIATACGDDAIRIF---KENPEAGDSDMVSFDLVHTEHRAHNQ 343
GH + D++W L + + + DD + + N + S V AH
Sbjct: 231 GHTA-VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD---------AHTA 280
Query: 344 DVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
+VNC+++NP +LA+ S D V LW ++
Sbjct: 281 EVNCLSFNPYSEFILATGSADKTVALWDLR 310
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 27/219 (12%)
Query: 42 NSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIR 101
S+T KG V+ + ++ Q I S D I++W K N K IL+ GH ++
Sbjct: 129 RSETSKG----VYCLQYDDQK--IVSGLRDNTIKIWDK----NTLECKRILT-GHTGSVL 177
Query: 102 ETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSR 161
+ I + S D+T VWD +G E TL H V + + N + TCS+
Sbjct: 178 CLQYDE--RVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLHLRF--NNGMMVTCSK 231
Query: 162 DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEAD 221
D+S+ VW++ + V+ H V V F D + SAS D T+K++ E
Sbjct: 232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEF- 288
Query: 222 WINFATLKSHTSTVWSLAF-DRIGSRLATCSDDATVKIW 259
TL H + L + DR+ + + S D T+++W
Sbjct: 289 ---VRTLNGHKRGIACLQYRDRL---VVSGSSDNTIRLW 321
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 53/246 (21%)
Query: 154 QFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLF 213
Q + + RD ++ +W+ ++ EC ++ H V +++ + ++ + S D TV+++
Sbjct: 144 QKIVSGLRDNTIKIWD---KNTLECKRILTGHTGSVLCLQYD--ERVIITGSSDSTVRVW 198
Query: 214 KEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKP--------- 264
+ E TL H V L F+ + TCS D ++ +W P
Sbjct: 199 DVNTGEM----LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVL 252
Query: 265 -GNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLT-----------------DLIA 306
G+ A + D D K + + SG +++ S C L+
Sbjct: 253 VGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVV 310
Query: 307 TACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 366
+ D+ IR++ + E G V H + V C+ ++ + S + DG
Sbjct: 311 SGSSDNTIRLW--DIECGACLRVL--------EGHEELVRCIRFD---NKRIVSGAYDGK 357
Query: 367 VKLWQI 372
+K+W +
Sbjct: 358 IKVWDL 363
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 112/278 (40%), Gaps = 20/278 (7%)
Query: 36 SRCEMINSQTLKGHQGRVWNVSWNPQGT-MISSCGEDKNIRLWGKESFGNKFTAKA---- 90
S C I + H+G V + PQ +I++ ++ ++ +K
Sbjct: 118 SVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQP 177
Query: 91 -ILSDGHQRTIRETAWSPCGN-FIASASFDATTAVWD-----KRSGQFECNATLEGHENE 143
+ GHQ+ +W+P N ++ SAS D T +WD K + GH
Sbjct: 178 DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV 237
Query: 144 VKSVTWSK-NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-IL 201
V+ V W + + + D+ + +W+ + + + ++AH +V + F+P+ IL
Sbjct: 238 VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 297
Query: 202 ASASYDDTVKLFKEDKAEADWINFATLKSHTSTV-WSLAFDRIGSRLATCSDDATVKIWK 260
A+ S D TV L+ + +F + K V WS + I LA+ D + +W
Sbjct: 298 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI---LASSGTDRRLHVWD 354
Query: 261 EYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW 298
K G T D + + + G H I D SW
Sbjct: 355 LSKIGEEQS--TEDAEDGPPELLFIHGGHTAKISDFSW 390
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/262 (20%), Positives = 110/262 (41%), Gaps = 38/262 (14%)
Query: 128 SGQFECNATLEGHENEVKSVTWSKN-GQFLATCSRDKSVWVWEVG----EEDEYECAAVI 182
SG+ + + L GH+ E ++W+ N +L + S D ++ +W++ E + +
Sbjct: 172 SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 231
Query: 183 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDR 242
H V+ V +H L + DD + + + T+ +HT+ V L+F+
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 291
Query: 243 IGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC-H 300
LAT S D TV +W D ++ + + H I+ + W H
Sbjct: 292 YSEFILATGSADKTVALW--------------DLRNLKLKLHSFESHKDE-IFQVQWSPH 336
Query: 301 LTDLIATACGDDAIRIFK----------ENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAW 350
++A++ D + ++ E+ E G +++ H H ++ +W
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI------HGGHTAKISDFSW 390
Query: 351 NPVVPGMLASCSDDGDVKLWQI 372
NP P ++ S S+D +++WQ+
Sbjct: 391 NPNEPWIICSVSEDNIMQVWQM 412
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 228 LKSHTSTVWSLAFD-RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLS 286
L+ H + L+++ + L + SDD T+ +W TP V +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA--------TPKEHRVIDAKNIFT 232
Query: 287 GHHGRTIYDISWCHLTDLIATACGDDAIRIF---KENPEAGDSDMVSFDLVHTEHRAHNQ 343
GH + D++W L + + + DD + + N + S V AH
Sbjct: 233 GHTA-VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD---------AHTA 282
Query: 344 DVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
+VNC+++NP +LA+ S D V LW ++
Sbjct: 283 EVNCLSFNPYSEFILATGSADKTVALWDLR 312
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 25/216 (11%)
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS GN +A A D + +W SG +E + SV W K G +LA +
Sbjct: 124 WS-SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 181
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V ++ + +H V + ++ + IL+S S + AE +
Sbjct: 182 VQLWDVQQQKRLRN---MTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEH---H 233
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
ATL H+ V L + G LA+ +D V +W P+ + W + T
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-----------PSAPGEGGWVPLQT 282
Query: 285 LSGHHGRTIYDISWCH-LTDLIATACG--DDAIRIF 317
+ H G + ++WC ++++AT G D IRI+
Sbjct: 283 FTQHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIW 317
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 12/192 (6%)
Query: 71 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 130
D ++ LW S G+ + G I AW GN++A + A +WD + +
Sbjct: 135 DNSVYLWSASS-GDILQLLQMEQPG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 191
Query: 131 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 190
N T H V S++W N L++ SR + +V + + A ++ H Q+V
Sbjct: 192 RLRNMT--SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVC 245
Query: 191 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSR-LAT 249
+R+ P LAS D+ V ++ E W+ T H V ++A+ S LAT
Sbjct: 246 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 305
Query: 250 --CSDDATVKIW 259
+ D ++IW
Sbjct: 306 GGGTSDRHIRIW 317
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 19/223 (8%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+ + H RV ++SWN ++SS +I + A LS GH + +
Sbjct: 194 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV---ATLS-GHSQEVCGL 247
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQ--FECNATLEGHENEVKSVTWSK-NGQFLATC- 159
W+P G +AS D VW G+ + T H+ VK+V W LAT
Sbjct: 248 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 307
Query: 160 -SRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP-FDNILASASYDDTVKLFKEDK 217
+ D+ + +W V C + ++AH Q V + + P + +++ + + +
Sbjct: 308 GTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYP 363
Query: 218 AEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWK 260
A A LK HTS V SL G+ +A+ + D T+++W+
Sbjct: 364 TMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 44 QTLKGHQGRVWNVSWNP-QGTMISSCG--EDKNIRLWGKESFGNKFTAKAILS--DGHQR 98
QT HQG V V+W P Q ++++ G D++IR+W + A LS D H +
Sbjct: 281 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW-------NVCSGACLSAVDAHSQ 333
Query: 99 TIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLAT 158
+ WSP + S A + + A L+GH + V S+T S +G +A+
Sbjct: 334 -VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 392
Query: 159 CSRDKSVWVWEVGEED 174
+ D+++ +W E D
Sbjct: 393 AAADETLRLWRCFELD 408
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 19 KTIPSTENLTGTNLILCSRCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW 77
K + S L++ M LKGH RV +++ +P G ++S D+ +RLW
Sbjct: 344 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 25/216 (11%)
Query: 105 WSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKS 164
WS GN +A A D + +W SG +E + SV W K G +LA +
Sbjct: 113 WS-SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 170
Query: 165 VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWIN 224
V +W+V ++ + +H V + ++ + IL+S S + AE +
Sbjct: 171 VQLWDVQQQKRLRN---MTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEH---H 222
Query: 225 FATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCT 284
ATL H+ V L + G LA+ +D V +W P+ + W + T
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-----------PSAPGEGGWVPLQT 271
Query: 285 LSGHHGRTIYDISWCH-LTDLIATACG--DDAIRIF 317
+ H G + ++WC ++++AT G D IRI+
Sbjct: 272 FTQHQG-AVKAVAWCPWQSNVLATGGGTSDRHIRIW 306
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 12/192 (6%)
Query: 71 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 130
D ++ LW S G+ + G I AW GN++A + A +WD + +
Sbjct: 124 DNSVYLWSASS-GDILQLLQMEQPG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180
Query: 131 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 190
N T H V S++W N L++ SR + +V + + A ++ H Q+V
Sbjct: 181 RLRNMT--SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVC 234
Query: 191 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSR-LAT 249
+R+ P LAS D+ V ++ E W+ T H V ++A+ S LAT
Sbjct: 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 294
Query: 250 --CSDDATVKIW 259
+ D ++IW
Sbjct: 295 GGGTSDRHIRIW 306
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 19/223 (8%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+ + H RV ++SWN ++SS +I + A LS GH + +
Sbjct: 183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV---ATLS-GHSQEVCGL 236
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQ--FECNATLEGHENEVKSVTWSK-NGQFLATC- 159
W+P G +AS D VW G+ + T H+ VK+V W LAT
Sbjct: 237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 296
Query: 160 -SRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP-FDNILASASYDDTVKLFKEDK 217
+ D+ + +W V C + ++AH Q V + + P + +++ + + +
Sbjct: 297 GTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYP 352
Query: 218 AEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWK 260
A A LK HTS V SL G+ +A+ + D T+++W+
Sbjct: 353 TMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 44 QTLKGHQGRVWNVSWNP-QGTMISSCG--EDKNIRLWGKESFGNKFTAKAILS--DGHQR 98
QT HQG V V+W P Q ++++ G D++IR+W + A LS D H +
Sbjct: 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW-------NVCSGACLSAVDAHSQ 322
Query: 99 TIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLAT 158
+ WSP + S A + + A L+GH + V S+T S +G +A+
Sbjct: 323 -VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381
Query: 159 CSRDKSVWVWEVGEED 174
+ D+++ +W E D
Sbjct: 382 AAADETLRLWRCFELD 397
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 19 KTIPSTENLTGTNLILCSRCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW 77
K + S L++ M LKGH RV +++ +P G ++S D+ +RLW
Sbjct: 333 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 24/212 (11%)
Query: 109 GNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVW 168
GN +A A D + +W SG +E + SV W K G +LA + V +W
Sbjct: 36 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
Query: 169 EVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATL 228
+V ++ + +H V + ++ + IL+S S + AE + ATL
Sbjct: 95 DVQQQKRLRN---MTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEH---HVATL 146
Query: 229 KSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 288
H+ V L + G LA+ +D V +W P+ + W + T + H
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVW-----------PSAPGEGGWVPLQTFTQH 195
Query: 289 HGRTIYDISWCH-LTDLIATACG--DDAIRIF 317
G + ++WC ++++AT G D IRI+
Sbjct: 196 QG-AVKAVAWCPWQSNVLATGGGTSDRHIRIW 226
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 12/192 (6%)
Query: 71 DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQ 130
D ++ LW S G+ + G I AW GN++A + A +WD + +
Sbjct: 44 DNSVYLWSASS-GDILQLLQMEQPG--EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100
Query: 131 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVK 190
N T H V S++W N L++ SR + +V + + A ++ H Q+V
Sbjct: 101 RLRNMT--SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHH--VATLSGHSQEVC 154
Query: 191 KVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSR-LAT 249
+R+ P LAS D+ V ++ E W+ T H V ++A+ S LAT
Sbjct: 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 214
Query: 250 --CSDDATVKIW 259
+ D ++IW
Sbjct: 215 GGGTSDRHIRIW 226
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 19/226 (8%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+ + H RV ++SWN ++SS +I A LS GH + +
Sbjct: 103 RNMTSHSARVGSLSWN--SYILSSGSRSGHIH---HHDVRVAEHHVATLS-GHSQEVCGL 156
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQ--FECNATLEGHENEVKSVTWSK-NGQFLATC- 159
W+P G +AS D VW G+ + T H+ VK+V W LAT
Sbjct: 157 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 216
Query: 160 -SRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP-FDNILASASYDDTVKLFKEDK 217
+ D+ + +W V C + ++AH Q V + + P + +++ + + +
Sbjct: 217 GTSDRHIRIWNVCSG---ACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYP 272
Query: 218 AEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYK 263
A A LK HTS V SL G+ +A+ + D T+++W+ ++
Sbjct: 273 TMA---KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 44 QTLKGHQGRVWNVSWNP-QGTMISSCG--EDKNIRLWGKESFGNKFTAKAILS--DGHQR 98
QT HQG V V+W P Q ++++ G D++IR+W + A LS D H +
Sbjct: 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW-------NVCSGACLSAVDAHSQ 242
Query: 99 TIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLAT 158
+ WSP + S A + + A L+GH + V S+T S +G +A+
Sbjct: 243 -VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301
Query: 159 CSRDKSVWVWEVGEED 174
+ D+++ +W E D
Sbjct: 302 AAADETLRLWRCFELD 317
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 19 KTIPSTENLTGTNLILCSRCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW 77
K + S L++ M LKGH RV +++ +P G ++S D+ +RLW
Sbjct: 253 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 14/216 (6%)
Query: 53 VWNVSWNPQGTMISSCGEDKNIRLWGKESFGNK-FTAKAILSDGHQRTIRETAWSPCGNF 111
V ++ P G I+ G D ++ N+ AK H + +++
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 112 IASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW--SKNGQFLATCSRDKSVWVWE 169
I +AS D T A+WD SGQ + GH +V + S+ G + DK VW+
Sbjct: 169 ILTASGDGTCALWDVESGQLL--QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 170 VGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLF--KEDKAEADWINFAT 227
+ +C H DV VR++P + AS S D T +L+ + D+ A + +
Sbjct: 227 M---RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI 283
Query: 228 LKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYK 263
+ +S +SL+ G L +D T+ +W K
Sbjct: 284 IFGASSVDFSLS----GRLLFAGYNDYTINVWDVLK 315
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 10/171 (5%)
Query: 44 QTLKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIR 101
Q+ GH V + P G S G DK +W S G A + H+ +
Sbjct: 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQA----FETHESDVN 244
Query: 102 ETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSR 161
+ P G+ AS S DAT ++D R+ + + E SV +S +G+ L
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304
Query: 162 DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKL 212
D ++ VW+V + +++ H V +R P S S+D T+++
Sbjct: 305 DYTINVWDVLKGSR---VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 96/250 (38%), Gaps = 23/250 (9%)
Query: 11 LDNQ-YLLPKTIPSTENLTGTNLILCSRCEMINSQTLKGHQGRVWNVSWNPQGTMISSCG 69
LDN+ + P T EN+ +++ H + S+ I +
Sbjct: 126 LDNKCSVYPLTFDKNENMAA------------KKKSVAMHTNYLSACSFTNSDMQILTAS 173
Query: 70 EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSG 129
D LW ES G ++ G + A S GN S D VWD RSG
Sbjct: 174 GDGTCALWDVES-GQLL--QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 130 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDV 189
Q C E HE++V SV + +G A+ S D + ++++ + E + + I
Sbjct: 231 Q--CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK-ESIIFGA 287
Query: 190 KKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLAT 249
V F +L + D T+ ++ K I F H + V +L G+ +
Sbjct: 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG----HENRVSTLRVSPDGTAFCS 343
Query: 250 CSDDATVKIW 259
S D T+++W
Sbjct: 344 GSWDHTLRVW 353
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 129 GQF--ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHI 186
GQF + TL+GH N+V + W K+ + + + S+D V VW+ ++ +
Sbjct: 50 GQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPC 106
Query: 187 QDVKKVRFHPFDNILASASYDDTVKLFKE--DKAEADWINFATLKSHTSTVWSLAFDRIG 244
V + P +A D+ ++ DK E ++ HT+ + + +F
Sbjct: 107 TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD 166
Query: 245 SRLATCSDDATVKIW 259
++ T S D T +W
Sbjct: 167 MQILTASGDGTCALW 181
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 36/239 (15%)
Query: 49 HQGRVWNVSWNP-QGTMISSCGEDKNIRLWGKE--SFGNKFTAKAILSDG------HQRT 99
H G + + P +G + S G D I L+ E S + +T KA+ S G H+ +
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 100 IRETAWSP--CGNFIASASFDATTAVWDKRSGQ----FECNATLEGHENEVKSVTWSKNG 153
+ W P G F S+SFD T VWD + Q F T+ H S
Sbjct: 102 VETVQWYPHDTGMF-TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC--- 157
Query: 154 QFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP-FDNILASASYDDTVKL 212
+A +R V + ++ C+ ++ H Q++ V + P +D ILA+AS D VKL
Sbjct: 158 -LVAVGTRGPKVQLCDLKSG---SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 213 FKEDKAEADWINF------------ATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
+ +A I + +H V L F G L T D +++W
Sbjct: 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 8/146 (5%)
Query: 49 HQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPC 108
H G+V + + G + + G D +RLW + N + + ++ ++ T C
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303
Query: 109 GNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVW 168
+ + +T AV+ SG E L+GH V + N Q L + SRD ++ W
Sbjct: 304 SSEFVFVPYGSTIAVYTVYSG--EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Query: 169 ------EVGEEDEYECAAVINAHIQD 188
V ++DE + +N +D
Sbjct: 362 VPSLYEPVPDDDETTTKSQLNPAFED 387
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 339 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
+ H Q++ V+W+P +LA+ S D VKLW ++
Sbjct: 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 44 QTLKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIR 101
QT +GH+ V V++NP+ T S C D+ +++W S G T L+ G +R +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVW---SLGQS-TPNFTLTTGQERGVN 188
Query: 102 ETAWSPCGN--FIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATC 159
+ P + ++ +AS D T +WD ++ C ATLEGH + V + + +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 160 SRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP 196
S D ++ +W Y+ +N ++ + HP
Sbjct: 247 SEDGTLKIW---NSSTYKVEKTLNVGLERSWCIATHP 280
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 89 KAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVT 148
K + + H IR A P ++ S S D T +W+ + + T EGHE+ V V
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQTFEGHEHFVMCVA 147
Query: 149 WS-KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN--ILASAS 205
++ K+ A+ D++V VW +G+ + + V V ++P + + +AS
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 206 YDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
D T+K++ ATL+ H S V F + + S+D T+KIW
Sbjct: 206 DDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 19/186 (10%)
Query: 37 RCEMINSQT------LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKA 90
R + N T + H + +++ +P + S +D ++LW E N + +
Sbjct: 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQ 134
Query: 91 ILSDGHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQFECNATLE-GHENEVKSVT 148
+GH+ + A++P + AS D T VW GQ N TL G E V V
Sbjct: 135 TF-EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVD 191
Query: 149 WSK--NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASY 206
+ + ++ T S D ++ +W+ + C A + H+ +V FHP I+ S S
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 207 DDTVKL 212
D T+K+
Sbjct: 249 DGTLKI 254
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 339 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 372
H V CVA+NP P AS D VK+W +
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 44 QTLKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIR 101
QT +GH+ V V++NP+ T S C D+ +++W S G T L+ G +R +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVW---SLGQS-TPNFTLTTGQERGVN 188
Query: 102 ETAWSPCGN--FIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATC 159
+ P + ++ +AS D T +WD ++ C ATLEGH + V + + +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 160 SRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP 196
S D ++ +W Y+ +N ++ + HP
Sbjct: 247 SEDGTLKIW---NSSTYKVEKTLNVGLERSWCIATHP 280
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 89 KAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVT 148
K + + H IR A P ++ S S D T +W+ + + T EGHE+ V V
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQTFEGHEHFVMCVA 147
Query: 149 WS-KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN--ILASAS 205
++ K+ A+ D++V VW +G+ + + V V ++P + + +AS
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 206 YDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
D T+K++ ATL+ H S V F + + S+D T+KIW
Sbjct: 206 DDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 13/171 (7%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAW 105
+ H + +++ +P + S +D ++LW E N + + +GH+ + A+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTF-EGHEHFVMCVAF 148
Query: 106 SPCG-NFIASASFDATTAVWDKRSGQFECNATLE-GHENEVKSVTWSK--NGQFLATCSR 161
+P + AS D T VW GQ N TL G E V V + + ++ T S
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 162 DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKL 212
D ++ +W+ + C A + H+ +V FHP I+ S S D T+K+
Sbjct: 207 DLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 339 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 372
H V CVA+NP P AS D VK+W +
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 44 QTLKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIR 101
QT +GH+ V V++NP+ T S C D+ +++W S G T L+ G +R +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVW---SLGQS-TPNFTLTTGQERGVN 188
Query: 102 ETAWSPCGN--FIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATC 159
+ P + ++ +AS D T +WD ++ C ATLEGH + V + + +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 160 SRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP 196
S D ++ +W Y+ +N ++ + HP
Sbjct: 247 SEDGTLKIW---NSSTYKVEKTLNVGLERSWCIATHP 280
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 89 KAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVT 148
K + + H IR A P ++ S S D T +W+ + + T EGHE+ V V
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQTFEGHEHFVMCVA 147
Query: 149 WS-KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN--ILASAS 205
++ K+ A+ D++V VW +G+ + + V V ++P + + +AS
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 206 YDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
D T+K++ ATL+ H S V F + + S+D T+KIW
Sbjct: 206 DDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 13/171 (7%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAW 105
+ H + +++ +P + S +D ++LW E N + + +GH+ + A+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTF-EGHEHFVMCVAF 148
Query: 106 SPC-GNFIASASFDATTAVWDKRSGQFECNATLE-GHENEVKSVTWSK--NGQFLATCSR 161
+P + AS D T VW GQ N TL G E V V + + ++ T S
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 162 DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKL 212
D ++ +W+ + C A + H+ +V FHP I+ S S D T+K+
Sbjct: 207 DLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 340 AHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 372
H V CVA+NP P AS D VK+W +
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 44 QTLKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIR 101
QT +GH+ V V++NP+ T S C D+ +++W S G T L+ G +R +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVW---SLGQS-TPNFTLTTGQERGVN 188
Query: 102 ETAWSPCGN--FIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATC 159
+ P + ++ +AS D T +WD ++ C ATLEGH + V + + +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 160 SRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP 196
S D ++ +W Y+ +N ++ + HP
Sbjct: 247 SEDGTLKIW---NSSTYKVEKTLNVGLERSWCIATHP 280
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 10/174 (5%)
Query: 89 KAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVT 148
K + + H IR A P ++ S S D T +W+ + + T EGHE+ V V
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQTFEGHEHFVMCVA 147
Query: 149 WS-KNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN--ILASAS 205
++ K+ A+ D++V VW +G+ + + V V ++P + + +AS
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 206 YDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
D T+K++ ATL+ H S V F + + S+D T+KIW
Sbjct: 206 DDLTIKIWDYQTKSC----VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 13/171 (7%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAW 105
+ H + +++ +P + S +D ++LW E N + + +GH+ + A+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTF-EGHEHFVMCVAF 148
Query: 106 SPC-GNFIASASFDATTAVWDKRSGQFECNATLE-GHENEVKSVTWSK--NGQFLATCSR 161
+P + AS D T VW GQ N TL G E V V + + ++ T S
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 162 DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKL 212
D ++ +W+ + C A + H+ +V FHP I+ S S D T+K+
Sbjct: 207 DLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 340 AHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 372
H V CVA+NP P AS D VK+W +
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 14/213 (6%)
Query: 95 GHQRTIRETAWSP-CGNFIASASFDATTAVWD-----KRSGQFECNATLEGHENEVKSVT 148
GHQ+ +W+P + SAS D T +WD K + GH V+ V+
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 149 WSK-NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-ILASASY 206
W + + + D+ + +W+ + + + ++AH +V + F+P+ ILA+ S
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 294
Query: 207 DDTVKLFKEDKAEADWINFATLKSHTSTV-WSLAFDRIGSRLATCSDDATVKIWKEYKPG 265
D TV L+ + +F + K V WS + I LA+ D + +W K G
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI---LASSGTDRRLNVWDLSKIG 351
Query: 266 NSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISW 298
P D + + GH + I D SW
Sbjct: 352 EEQS-PEDAEDGPPELLFIHGGHTAK-ISDFSW 382
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 120/304 (39%), Gaps = 42/304 (13%)
Query: 91 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWD------KRSGQFECNA--TLEGHEN 142
I +G R +PC IA+ + + V+D K ECN L GH+
Sbjct: 121 INHEGEVNRARYMPQNPC--IIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQK 178
Query: 143 EVKSVTWSKN-GQFLATCSRDKSVWVWEVG----EEDEYECAAVINAHIQDVKKVRFHPF 197
E ++W+ N L + S D ++ +W++ E + + H V+ V +H
Sbjct: 179 EGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLL 238
Query: 198 DNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSR-LATCSDDATV 256
L + DD + + ++ ++ +HT+ V L+F+ LAT S D TV
Sbjct: 239 HESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTV 298
Query: 257 KIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWC-HLTDLIATACGDDAIR 315
+W K H I+ + W H ++A++ D +
Sbjct: 299 ALWDLRN---------------LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLN 343
Query: 316 IF-------KENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVK 368
++ +++PE + +H H A D +WNP P ++ S S+D ++
Sbjct: 344 VWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDF---SWNPNEPWVICSVSEDNIMQ 400
Query: 369 LWQI 372
+WQ+
Sbjct: 401 VWQM 404
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 13/171 (7%)
Query: 46 LKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLWGKESF---GNKFTAKAILSDGHQRTI 100
L+GHQ + +SWNP G ++S+ +D I LW + G AK I + GH +
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSAS-DDHTICLWDISAVPKEGKVVDAKTIFT-GHTAVV 230
Query: 101 RETAWSPCG-NFIASASFDATTAVWDKRSGQF-ECNATLEGHENEVKSVTWSKNGQF-LA 157
+ +W + S + D +WD RS + + +++ H EV ++++ +F LA
Sbjct: 231 EDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA 290
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPF-DNILASASYD 207
T S DK+V +W++ + +H ++ +V++ P + ILAS+ D
Sbjct: 291 TGSADKTVALWDL--RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 339
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 228 LKSHTSTVWSLAFD-RIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLS 286
L+ H + L+++ + L + SDD T+ +W P V +
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISA--------VPKEGKVVDAKTIFT 224
Query: 287 GHHGRTIYDISWCHLTD-LIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDV 345
GH + D+SW L + L + D + I+ S D AH +V
Sbjct: 225 GHTA-VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-------AHTAEV 276
Query: 346 NCVAWNPVVPGMLASCSDDGDVKLWQIK 373
NC+++NP +LA+ S D V LW ++
Sbjct: 277 NCLSFNPYSEFILATGSADKTVALWDLR 304
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 44 QTLKGHQGRVWNVSWNPQG-TMISSCGEDKNIRLWGKESFGNKFTAK---------AILS 93
+ + H+ ++ V W+P T+++S G D+ + +W G + + + +
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIH 370
Query: 94 DGHQRTIRETAWSPCGNF-IASASFDATTAVW 124
GH I + +W+P + I S S D VW
Sbjct: 371 GGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 106/257 (41%), Gaps = 28/257 (10%)
Query: 128 SGQFECNATLEGHENEVKSVTWSKN-GQFLATCSRDKSVWVWEVG----EEDEYECAAVI 182
SG+ + L GH+ E ++W+ N L + S D +V +W++ E + A+
Sbjct: 166 SGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIF 225
Query: 183 NAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDR 242
H V+ V +H L + DD + + ++ + +HT+ V L+F+
Sbjct: 226 TGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP 285
Query: 243 IGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHL 301
LAT S D TV +W D ++ + T H I+ + W
Sbjct: 286 YSEFILATGSADKTVALW--------------DLRNLKLKLHTFESHKDE-IFQVHWSPH 330
Query: 302 TDLIATACGDDA------IRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVP 355
+ I + G D + E A D++ +L+ H H ++ +WNP P
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI-HGGHTAKISDFSWNPNEP 389
Query: 356 GMLASCSDDGDVKLWQI 372
++ S S+D +++WQ+
Sbjct: 390 WVICSVSEDNIMQIWQM 406
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 46 LKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLW---GKESFGNKFTAKAILSDGHQRTI 100
L+GHQ + +SWN G ++S+ +D + LW G AKAI + GH +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSAS-DDHTVCLWDINAGPKEGKIVDAKAIFT-GHSAVV 232
Query: 101 RETAWSPCG-NFIASASFDATTAVWDKRSGQFECNATL-EGHENEVKSVTWSKNGQF-LA 157
+ AW + S + D +WD RS + L + H EV ++++ +F LA
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPF-DNILASASYD------DTV 210
T S DK+V +W++ + +H ++ +V + P + ILAS+ D D
Sbjct: 293 TGSADKTVALWDL--RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 211 KLFKEDKAE 219
K+ +E AE
Sbjct: 351 KIGEEQSAE 359
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 31/234 (13%)
Query: 152 NGQFLAT-CSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD-NILASASYDDT 209
+ QF A+ C DK + + EC IN H +V + R+ P + +I+A+ +
Sbjct: 92 DAQFDASHCDSDKGEFGGFGSVTGKIECEIKIN-HEGEVNRARYMPQNPHIIATKTPSSD 150
Query: 210 VKLFKEDKAEADWINFAT------LKSHTSTVWSLAFD-RIGSRLATCSDDATVKIWKEY 262
V +F K A L+ H + L+++ + L + SDD TV +W
Sbjct: 151 VLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD-- 208
Query: 263 KPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIF---KE 319
+AG P + +GH + D++W L + + + DD + +
Sbjct: 209 ---INAG---PKEGKIVDAKAIFTGH-SAVVEDVAWHLLHESLFGSVADDQKLMIWDTRS 261
Query: 320 NPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
N + S +V AH +VNC+++NP +LA+ S D V LW ++
Sbjct: 262 NTTSKPSHLVD---------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 44 QTLKGHQGRVWNVSWNPQG-TMISSCGEDKNIRLWGKESFGNKFTAK---------AILS 93
T + H+ ++ V W+P T+++S G D+ + +W G + +A+ +
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIH 372
Query: 94 DGHQRTIRETAWSPCGNF-IASASFDATTAVW 124
GH I + +W+P + I S S D +W
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 46 LKGHQGRVWNVSWNPQ--GTMISSCGEDKNIRLW---GKESFGNKFTAKAILSDGHQRTI 100
L+GHQ + +SWN G ++S+ +D + LW G AKAI + GH +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSAS-DDHTVCLWDINAGPKEGKIVDAKAIFT-GHSAVV 232
Query: 101 RETAWSPCG-NFIASASFDATTAVWDKRSGQFECNATL-EGHENEVKSVTWSKNGQF-LA 157
+ AW + S + D +WD RS + L + H EV ++++ +F LA
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILA 292
Query: 158 TCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPF-DNILASASYD------DTV 210
T S DK+V +W++ + +H ++ +V + P + ILAS+ D D
Sbjct: 293 TGSADKTVALWDL--RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 211 KLFKEDKAE 219
K+ +E AE
Sbjct: 351 KIGEEQSAE 359
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/297 (22%), Positives = 117/297 (39%), Gaps = 37/297 (12%)
Query: 96 HQRTIRETAWSPCG-NFIASASFDATTAVWD------KRSGQFECNA--TLEGHENEVKS 146
H+ + + P + IA+ + + V+D K ECN L GH+ E
Sbjct: 125 HEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYG 184
Query: 147 VTWSKN-GQFLATCSRDKSVWVWEVG----EEDEYECAAVINAHIQDVKKVRFHPFDNIL 201
++W+ N L + S D +V +W++ E + A+ H V+ V +H L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 202 ASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSR-LATCSDDATVKIWK 260
+ DD + ++ + +HT+ V L+F+ LAT S D TV +W
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW- 303
Query: 261 EYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDA------I 314
D ++ + T H I+ + W + I + G D +
Sbjct: 304 -------------DLRNLKLKLHTFESHKDE-IFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 315 RIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQ 371
E A D++ +L+ H H ++ +WNP P ++ S S+D ++WQ
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 31/234 (13%)
Query: 152 NGQFLAT-CSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFD-NILASASYDDT 209
+ QF A+ C DK + + EC IN H +V + R+ P + +I+A+ +
Sbjct: 92 DAQFDASHCDSDKGEFGGFGSVTGKIECEIKIN-HEGEVNRARYXPQNPHIIATKTPSSD 150
Query: 210 VKLFKEDKAEADWINFAT------LKSHTSTVWSLAFD-RIGSRLATCSDDATVKIWKEY 262
V +F K A L+ H + L+++ + L + SDD TV +W
Sbjct: 151 VLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD-- 208
Query: 263 KPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTD-LIATACGDDAIRIF--KE 319
+AG P + +GH + D++W L + L + D + I+ +
Sbjct: 209 ---INAG---PKEGKIVDAKAIFTGH-SAVVEDVAWHLLHESLFGSVADDQKLXIWDTRS 261
Query: 320 NPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
N + S +V AH +VNC+++NP +LA+ S D V LW ++
Sbjct: 262 NTTSKPSHLVD---------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 37 RCEMINSQTLKGHQGRVWNVSWNPQG-TMISSCGEDKNIRLWGKESFGNKFTAK------ 89
R + T + H+ ++ V W+P T+++S G D+ + +W G + +A+
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGP 365
Query: 90 ---AILSDGHQRTIRETAWSPCGNF-IASASFDATTAVW 124
+ GH I + +W+P + I S S D +W
Sbjct: 366 PELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 25/226 (11%)
Query: 96 HQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQF 155
HQ T+ +T SP G + AS +WD T+ VK ++W +
Sbjct: 60 HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 156 LATCSRDKS----VWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVK 211
+A + V++++ G + + D K R PF I S S D+TV
Sbjct: 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR--PFRII--SGSDDNTVA 173
Query: 212 LFKEDKAEADWINF-ATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGI 270
+F E F +T HT V S+ ++ GS A+ D T+ ++ G G+
Sbjct: 174 IF-----EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGV 227
Query: 271 PTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRI 316
++DS+ H +++ ++W IA+A D I+I
Sbjct: 228 --FEDDSLKNVA------HSGSVFGLTWSPDGTKIASASADKTIKI 265
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 83 GNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWD----KRSGQFECNATLE 138
G F K+ + H + + ++P G+ AS D T +++ ++G FE ++
Sbjct: 177 GPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 235
Query: 139 -GHENEVKSVTWSKNGQFLATCSRDKSVWVWEV 170
H V +TWS +G +A+ S DK++ +W V
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 49 HQGRVWNVSWNPQGTMISSCGEDKNIRLW 77
H G V+ ++W+P GT I+S DK I++W
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIW 266
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 147 VTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASY 206
V S + QF+A +D V V+++ E ++ H ++ V F L +
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVAT-- 509
Query: 207 DDTVKLFKEDKAEADWINFATLKS-----HTSTVWSLAFDRIGSRLATCSDDATVKIWKE 261
D + K+ A NF + HT+ V +++ RLAT S D +V +W
Sbjct: 510 DQSRKVIPYSVAN----NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
Query: 262 YKP 264
KP
Sbjct: 566 NKP 568
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 64 MISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAV 123
++ G+D + ++ K S + K I+ H I A+S G F+ A+ + +
Sbjct: 462 FVAVGGQDSKVHVY-KLSGASVSEVKTIV---HPAEITSVAFSNNGAFLV-ATDQSRKVI 516
Query: 124 WDKRSGQFECNATLE--GHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEY 176
+ FE T H +V V+WS + LAT S D SV VW + + ++
Sbjct: 517 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 571
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 14/175 (8%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL+GH V ++W G ++S G D +++W S KFT H ++ A
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-----NHNAAVKAVA 266
Query: 105 WSP-CGNFIAS--ASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCS- 160
W P N +A+ + D W+ +G N G ++V S+ WS + + + +
Sbjct: 267 WCPWQSNLLATGGGTMDKQIHFWNAATGA-RVNTVDAG--SQVTSLIWSPHSKEIMSTHG 323
Query: 161 -RDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
D ++ +W + I AH V P IL++A+ D+ +K ++
Sbjct: 324 FPDNNLSIWSYSSSGLTKQVD-IPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 89/241 (36%), Gaps = 32/241 (13%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRET 103
+T+ GHQ RV +SWN ++SS I ++ GH +
Sbjct: 170 RTMAGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVRIANHQIGTL----QGHSSEVCGL 223
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSK-NGQFLAT--CS 160
AW G +AS D +WD RS + T H VK+V W LAT +
Sbjct: 224 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT--NHNAAVKAVAWCPWQSNLLATGGGT 281
Query: 161 RDKSVWVWEVG--------EEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKL 212
DK + W + + + + H +++ P DN L+ SY +
Sbjct: 282 MDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP-DNNLSIWSYSSSGLT 340
Query: 213 FKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPT 272
+ D + +H + V A G L+T + D +K W+ Y G+ P
Sbjct: 341 KQVD-----------IPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD-GDHVKRPI 388
Query: 273 P 273
P
Sbjct: 389 P 389
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 26/200 (13%)
Query: 112 IASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVG 171
+ + + + VW+ SG A + V SV WS +G FL+ + V +++V
Sbjct: 106 VVAVALERNVYVWNADSGSVSALAETD-ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164
Query: 172 EEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSH 231
+ + A A + + R ++L+S S + A TL+ H
Sbjct: 165 SQTKLRTMAGHQARVGCLSWNR-----HVLSSGSRSGAIHHHDVRIANH---QIGTLQGH 216
Query: 232 TSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGR 291
+S V LA+ G +LA+ +D V+IW S+ K T +H
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDA-------------RSSIPKFTKT---NHNA 260
Query: 292 TIYDISWCH-LTDLIATACG 310
+ ++WC ++L+AT G
Sbjct: 261 AVKAVAWCPWQSNLLATGGG 280
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 18/215 (8%)
Query: 57 SWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASAS 116
+WN T I+ C + + ++ E GNK+ L + H + W+P N I +
Sbjct: 15 AWNKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCG 71
Query: 117 FDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEY 176
D VW + ++ + + V W+ N + A S + + + +E+++
Sbjct: 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 131
Query: 177 ECAAVINAHIQD-VKKVRFHPFDNILASASYDDTVKLF-------KEDKAEADW---INF 225
I I+ V + +HP +LA+ S D ++F +E A W + F
Sbjct: 132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 191
Query: 226 ATLKSHTST----VWSLAFDRIGSRLATCSDDATV 256
L +S+ V + F GSR+A S D+TV
Sbjct: 192 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 88/229 (38%), Gaps = 24/229 (10%)
Query: 41 INSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTI 100
+ LK H G+V V W P I +CG D+N +W + K T + + R +
Sbjct: 43 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV 102
Query: 101 RETAWSPCGNFIASASFDATTAV--WDKRSGQFECNATLEGHENEVKSVTWSKNGQFLAT 158
R W+P A S ++ +++ + + C + + V S+ W N LA
Sbjct: 103 R---WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159
Query: 159 CS-----RDKSVWVWEVGEEDEY----------ECAAVINAHIQDVKKVRFHPFDNILAS 203
S R S ++ EV E E ++ V V F + +A
Sbjct: 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 219
Query: 204 ASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSD 252
S+D TV L DK A ATL S T + ++ F S +A D
Sbjct: 220 VSHDSTVCLADADKKMA----VATLASETLPLLAVTFITESSLVAAGHD 264
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 137 LEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP 196
L+ H +V V W+ + + TC D++ +VW + + ++ VI + + VR+ P
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL-KGRTWKPTLVILRINRAARCVRWAP 106
Query: 197 FDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATV 256
+ A S + + ++ W+ K STV SL + LA S D
Sbjct: 107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166
Query: 257 KIWKEY-KPGNSAGIPTP 273
+I+ Y K PTP
Sbjct: 167 RIFSAYIKEVEERPAPTP 184
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 18/215 (8%)
Query: 57 SWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASAS 116
+WN T I+ C + + ++ E GNK+ L + H + W+P N I +
Sbjct: 15 AWNKDRTQIAICPNNHEVHIY--EKSGNKWVQVHELKE-HNGQVTGIDWAPDSNRIVTCG 71
Query: 117 FDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEY 176
D VW + ++ + + V W+ N + A S + + + +E+++
Sbjct: 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 131
Query: 177 ECAAVINAHIQD-VKKVRFHPFDNILASASYDDTVKLF-------KEDKAEADW---INF 225
I I+ V + +HP +LA+ S D ++F +E A W + F
Sbjct: 132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 191
Query: 226 ATLKSHTST----VWSLAFDRIGSRLATCSDDATV 256
L +S+ V + F GSR+A S D+TV
Sbjct: 192 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 88/229 (38%), Gaps = 24/229 (10%)
Query: 41 INSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTI 100
+ LK H G+V + W P I +CG D+N +W + K T + + R +
Sbjct: 43 VQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV 102
Query: 101 RETAWSPCGNFIASASFDATTAV--WDKRSGQFECNATLEGHENEVKSVTWSKNGQFLAT 158
R W+P A S ++ +++ + + C + + V S+ W N LA
Sbjct: 103 R---WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159
Query: 159 CS-----RDKSVWVWEVGEEDEY----------ECAAVINAHIQDVKKVRFHPFDNILAS 203
S R S ++ EV E E ++ V V F + +A
Sbjct: 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 219
Query: 204 ASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSD 252
S+D TV L DK A ATL S T + ++ F S +A D
Sbjct: 220 VSHDSTVCLADADKKMA----VATLASETLPLLAVTFITESSLVAAGHD 264
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 137 LEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHP 196
L+ H +V + W+ + + TC D++ +VW + + ++ VI + + VR+ P
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTL-KGRTWKPTLVILRINRAARCVRWAP 106
Query: 197 FDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATV 256
+ A S + + ++ W+ K STV SL + LA S D
Sbjct: 107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166
Query: 257 KIWKEY-KPGNSAGIPTP 273
+I+ Y K PTP
Sbjct: 167 RIFSAYIKEVEERPAPTP 184
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 89 KAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVT 148
KAI GH+R + + ++ G+ + S S D++ +VW +G E TL+GH + S+
Sbjct: 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSID 81
Query: 149 WSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNIL 201
++ T S D S+ +W+V +C A + + VK+V F P N
Sbjct: 82 VDCFTKYCVTGSADYSIKLWDVSNG---QCVATWKSPVP-VKRVEFSPCGNYF 130
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 14/114 (12%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW---GKESFGNKFTAKAILSDGHQRTIRE 102
L GH+ + V +N +G ++ SC +D + +W E G DGH TI
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL--------DGHTGTIWS 79
Query: 103 TAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFL 156
+ + S D + +WD +GQ C AT + VK V +S G +
Sbjct: 80 IDVDCFTKYCVTGSADYSIKLWDVSNGQ--CVATWKS-PVPVKRVEFSPCGNYF 130
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 179 AAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL 238
A + H + + +V+++ ++L S S D + ++ E TL HT T+WS+
Sbjct: 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE----RLGTLDGHTGTIWSI 80
Query: 239 AFDRIGSRLATCSDDATVKIW 259
D T S D ++K+W
Sbjct: 81 DVDCFTKYCVTGSADYSIKLW 101
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRL 76
++GH G + V+ +PQGT +S GED IRL
Sbjct: 311 VQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 67/179 (37%), Gaps = 24/179 (13%)
Query: 45 TLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
TL GH G +W++ + + D +I+LW + T K+ + ++
Sbjct: 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP------VKRVE 122
Query: 105 WSPCGNF----------------IASASFDATTAVWDKRSGQFECNATLEGHENEVKSVT 148
+SPCGN+ I D+ T K S + +
Sbjct: 123 FSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182
Query: 149 WSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYD 207
WS G+++ +D + ++V + YE I+ H + + ++F P ++S D
Sbjct: 183 WSTKGKYIIAGHKDGKISKYDV--SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 104 AWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDK 163
WS G +I + D + +D S +E +++ HE + + +S + + T SRD
Sbjct: 182 GWSTKGKYIIAGHKDGKISKYD-VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT 240
Query: 164 SVWVWEV 170
+ ++ +V
Sbjct: 241 NSFLVDV 247
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 96 HQRTIRETAWSPCGN-FIASASFDATTAVWDKRSGQFECNATLE-GHENEVKSVTWSKNG 153
H++ + A +PC + F+A+AS D T +WD R + + + H + V + +S +G
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 154 QFLATCSRDKSVWVWEVGEED-EYECAAVINAHIQDVKKVR--FHPFDNILASASYDD 208
L T + + V+ + D + H Q + ++ +HP N++ Y D
Sbjct: 309 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 15/213 (7%)
Query: 52 RVWNVSWNPQGTMISSCG-EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG- 109
R +++W+P + G + +I LW +FG K I G +I ++P
Sbjct: 121 RATSLAWHPTHPSTVAVGSKGGDIMLW---NFGIKDKPTFIKGIGAGGSITGLKFNPLNT 177
Query: 110 NFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWE 169
N ++S + TT + D + A+ + S+ S + + + T +V +
Sbjct: 178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN 237
Query: 170 VGEEDEYECAAVINAHIQDVKKVRFHPF-DNILASASYDDTVKL--FKEDKAEADWINFA 226
+ ++ + + H + V V +P D LA+AS D TVK+ ++ + +A +F
Sbjct: 238 MDGKELWN----LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA---SFL 290
Query: 227 TLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
H V + F G+RL T + ++++
Sbjct: 291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 339 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
R H + V VA NP LA+ S D VK+W ++
Sbjct: 247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 96 HQRTIRETAWSPCGN-FIASASFDATTAVWDKRSGQFECNATLE-GHENEVKSVTWSKNG 153
H++ + A +PC + F+A+AS D T +WD R + + + H + V + +S +G
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 154 QFLATCSRDKSVWVWEVGEED-EYECAAVINAHIQDVKKVR--FHPFDNILASASYDD 208
L T + + V+ + D + H Q + ++ +HP N++ Y D
Sbjct: 309 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 15/213 (7%)
Query: 52 RVWNVSWNPQGTMISSCG-EDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG- 109
R +++W+P + G + +I LW +FG K I G +I ++P
Sbjct: 121 RATSLAWHPTHPSTVAVGSKGGDIMLW---NFGIKDKPTFIKGIGAGGSITGLKFNPLNT 177
Query: 110 NFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWE 169
N ++S + TT + D + A+ + S+ S + + + T +V +
Sbjct: 178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN 237
Query: 170 VGEEDEYECAAVINAHIQDVKKVRFHPF-DNILASASYDDTVKL--FKEDKAEADWINFA 226
+ ++ + + H + V V +P D LA+AS D TVK+ ++ + +A +F
Sbjct: 238 MDGKELWN----LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA---SFL 290
Query: 227 TLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
H V + F G+RL T + ++++
Sbjct: 291 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 339 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
R H + V VA NP LA+ S D VK+W ++
Sbjct: 247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 96 HQRTIRETAWSPCGN-FIASASFDATTAVWDKRSGQFECNATLE-GHENEVKSVTWSKNG 153
H++ + A +PC + F+A+AS D T +WD R + + + H + V + +S +G
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 154 QFLATCSRDKSVWVWEVGEED-EYECAAVINAHIQDVKKVR--FHPFDNILASASYDD 208
L T + + V+ + D + H Q + ++ +HP N++ Y D
Sbjct: 310 ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 367
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 92/213 (43%), Gaps = 15/213 (7%)
Query: 52 RVWNVSWNP-QGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG- 109
R +++W+P + ++ + +I LW +FG K I G +I ++P
Sbjct: 122 RATSLAWHPTHPSTVAVGSKGGDIMLW---NFGIKDKPTFIKGIGAGGSITGLKFNPLNT 178
Query: 110 NFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWE 169
N ++S + TT + D + A+ + S+ S + + + T +V +
Sbjct: 179 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN 238
Query: 170 VGEEDEYECAAVINAHIQDVKKVRFHPF-DNILASASYDDTVKL--FKEDKAEADWINFA 226
+ ++ + + H + V V +P D LA+AS D TVK+ ++ + +A +F
Sbjct: 239 MDGKELWN----LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA---SFL 291
Query: 227 TLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
H V + F G+RL T + ++++
Sbjct: 292 YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 324
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 339 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
R H + V VA NP LA+ S D VK+W ++
Sbjct: 248 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 282
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 30/218 (13%)
Query: 56 VSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASA 115
++W+ G I + E+ +RLW NK A + + H+ I W+ G I S
Sbjct: 114 LAWSHDGNSIVTGVENGELRLW------NKTGALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 116 SFDATTAVWDKRSG----QFECNAT------LEGHENEVK---SVTWSKNGQFLATCSRD 162
+ T +W+ SG FE T E H + V W + +F+ +
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK- 226
Query: 163 KSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADW 222
+++V+++ E+ + H + + F+ + +L SAS D T++++ +
Sbjct: 227 GAIFVYQITEK---TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Query: 223 INFATLKSHTSTVWSLAFDRIG-SRLATCSDDATVKIW 259
+ +S S W +G ++ +CS D +V++W
Sbjct: 284 CFYGHSQSIVSASW------VGDDKVISCSMDGSVRLW 315
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 70/167 (41%), Gaps = 20/167 (11%)
Query: 6 DLETLLDNQYLLPKTIPSTENLTGTNLILCSRCEMINSQTLKGHQGRVWNVSWNPQGTMI 65
D+E + D+++++P + + + E + L GH G + + +N ++
Sbjct: 211 DVEWVDDDKFVIPGPKGA--------IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262
Query: 66 SSCGEDKNIRLW--GKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAV 123
S +D +R+W G + N F GH ++I +W I S S D + +
Sbjct: 263 LSASDDGTLRIWHGGNGNSQNCFY-------GHSQSIVSASWVGDDKVI-SCSMDGSVRL 314
Query: 124 WDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV 170
W + + ++G + + S++GQ A D V V+++
Sbjct: 315 WSLKQNTLLALSIVDGV--PIFAGRISQDGQKYAVAFMDGQVNVYDL 359
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 13/93 (13%)
Query: 285 LSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQD 344
L GHHG I + + L+ +A D +RI+ G+S + H+Q
Sbjct: 243 LIGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGG--NGNSQNCFY--------GHSQS 291
Query: 345 VNCVAWNPVVPGMLASCSDDGDVKLWQIKLENL 377
+ +W V + SCS DG V+LW +K L
Sbjct: 292 IVSASW--VGDDKVISCSMDGSVRLWSLKQNTL 322
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 184 AHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRI 243
AH+ ++ K++F P L S+S D +K++ + D N TL H +TV +A
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIW----SVKDGSNPRTLIGHRATVTDIAIIDR 189
Query: 244 GSRLATCSDDATVKIWK 260
G + + S D T+++W+
Sbjct: 190 GRNVLSASLDGTIRLWE 206
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 47 KGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS 106
+ H + + + P G + S +D +++W + N T GH+ T+ + A
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTDIAII 187
Query: 107 PCGNFIASASFDATTAVWDKRSG 129
G + SAS D T +W+ +G
Sbjct: 188 DRGRNVLSASLDGTIRLWECGTG 210
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 86 FTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVK 145
F + + H I + + P G + S+S D +W + G TL GH V
Sbjct: 125 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--NPRTLIGHRATVT 182
Query: 146 SVTWSKNGQFLATCSRDKSVWVWEVG 171
+ G+ + + S D ++ +WE G
Sbjct: 183 DIAIIDRGRNVLSASLDGTIRLWECG 208
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 1 MSSIFDLETLLDNQYLLP----KTIPSTENLTGTN----LILCSRCEMINSQTLKGHQGR 52
+ S F+L+ +D ++ K PS E L ++ L + S + N +TL GH+
Sbjct: 121 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 180
Query: 53 VWNVSWNPQGTMISSCGEDKNIRLW 77
V +++ +G + S D IRLW
Sbjct: 181 VTDIAIIDRGRNVLSASLDGTIRLW 205
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 31/126 (24%)
Query: 229 KSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGH 288
++H S + L F G L + S D +KIW N TL GH
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR---------------TLIGH 177
Query: 289 HGRTIYDISWCHLTDLIATACGDDAIRIF-------------KENPEAGDSDMVSFDLVH 335
T+ DI+ + +A D IR++ KENP G + + F V
Sbjct: 178 RA-TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF--VG 234
Query: 336 TEHRAH 341
T+ + H
Sbjct: 235 TDRQLH 240
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 184 AHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRI 243
AH+ ++ K++F P L S+S D +K++ + D N TL H +TV +A
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIW----SVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 244 GSRLATCSDDATVKIWK 260
G + + S D T+++W+
Sbjct: 193 GRNVLSASLDGTIRLWE 209
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 47 KGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWS 106
+ H + + + P G + S +D +++W + N T GH+ T+ + A
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-----GHRATVTDIAII 190
Query: 107 PCGNFIASASFDATTAVWDKRSG 129
G + SAS D T +W+ +G
Sbjct: 191 DRGRNVLSASLDGTIRLWECGTG 213
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 86 FTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVK 145
F + + H I + + P G + S+S D +W + G TL GH V
Sbjct: 128 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--NPRTLIGHRATVT 185
Query: 146 SVTWSKNGQFLATCSRDKSVWVWEVG 171
+ G+ + + S D ++ +WE G
Sbjct: 186 DIAIIDRGRNVLSASLDGTIRLWECG 211
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 1 MSSIFDLETLLDNQYLLP----KTIPSTENLTGTN----LILCSRCEMINSQTLKGHQGR 52
+ S F+L+ +D ++ K PS E L ++ L + S + N +TL GH+
Sbjct: 124 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 183
Query: 53 VWNVSWNPQGTMISSCGEDKNIRLW 77
V +++ +G + S D IRLW
Sbjct: 184 VTDIAIIDRGRNVLSASLDGTIRLW 208
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 111/273 (40%), Gaps = 40/273 (14%)
Query: 50 QGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCG 109
QG + +V ++ + ++ G+D I G F GHQ + ++
Sbjct: 59 QGFLNSVCYDSEKELLLFGGKDTXIN--GVPLFATSGEDPLYTLIGHQGNVCSLSFQD-- 114
Query: 110 NFIASASFDATTAVWDKRSGQFECNATLEGHENEV---KSVTWSKNGQFLATCSRDKSVW 166
+ S S+D T VW + G N L+ H V K V++S+N +FL T S DK++
Sbjct: 115 GVVISGSWDKTAKVW--KEGSLVYN--LQAHNASVWDAKVVSFSEN-KFL-TASADKTIK 168
Query: 167 VWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFA 226
+W+ ++ + + N ++ + V D S S D +KL +
Sbjct: 169 LWQ-NDKVIKTFSGIHNDVVRHLAVVD----DGHFISCSNDGLIKLVDXHTGDV----LR 219
Query: 227 TLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLS 286
T + H S V+ + G + +C +D TV+IW + + G+ + T S+W C +
Sbjct: 220 TYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSK-ENGSLKQVITLPAISIWSVDCXSN 277
Query: 287 GHHGRTIYDISWCHLTDLIATACGDDAIRIFKE 319
G I D+ +RIF +
Sbjct: 278 GD----------------IIVGSSDNLVRIFSQ 294
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKES 81
+T +GH+ V+ + P G ++S CGED+ +R+W KE+
Sbjct: 219 RTYEGHESFVYCIKLLPNGDIVS-CGEDRTVRIWSKEN 255
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 110/284 (38%), Gaps = 84/284 (29%)
Query: 131 FECNATLEGH-----------ENEVKSVT-------WSKNGQFLATCSRDKSVWVWEVGE 172
++ +ATL+GH +++V SV+ WSK+ Q+L T ++ V
Sbjct: 8 YQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCY 67
Query: 173 EDEYECA------AVIN-----------------AHIQDVKKVRFHPFDNILASASYDDT 209
+ E E IN H +V + F D ++ S S+D T
Sbjct: 68 DSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKT 125
Query: 210 VKLFKEDKAEADWINFATLKSHTSTVWS---LAFDRIGSRLATCSDDATVKIWKEYKPGN 266
K++KE L++H ++VW ++F ++ T S D T+K+W+
Sbjct: 126 AKVWKEGSL------VYNLQAHNASVWDAKVVSFSE--NKFLTASADKTIKLWQ------ 171
Query: 267 SAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDS 326
ND V K T SG H + ++ I +C +D + I + GD
Sbjct: 172 --------NDKVIK---TFSGIHNDVVRHLAVVDDGHFI--SCSNDGL-IKLVDXHTGD- 216
Query: 327 DMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 370
V + H V C+ P G + SC +D V++W
Sbjct: 217 -------VLRTYEGHESFVYCIKLLP--NGDIVSCGEDRTVRIW 251
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 110 NFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW-SKNGQFLATCSRDKSVWVW 168
+ +A+ D ++WD R G + L+ HE E+ V + N + L TCS D S+W W
Sbjct: 250 HVVATGGQDGMLSIWDVRQGTMPV-SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
Query: 169 E 169
+
Sbjct: 309 D 309
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 56/287 (19%), Positives = 110/287 (38%), Gaps = 47/287 (16%)
Query: 85 KFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEV 144
+F+ A + H + + + G A+ S D++ +W + E +++
Sbjct: 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKF 70
Query: 145 KSVTWSKNGQFLATCSRDKSVWVWEVGEEDE-YECAAVINAHIQDVKKVRFHP-FDNILA 202
+ WS N + +A + S+ ++ E + A + H VK V+F+ DN+LA
Sbjct: 71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLA 130
Query: 203 SASYDDTVKLFKEDKAEADWINFATL-----------------------------KSHTS 233
S + + ++ +K N+ L S+ +
Sbjct: 131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFA 190
Query: 234 TVWSLAFDRIGSRLATCSDDATVKIWK---EYKPGNSAGIPTP---DNDS---VWKC--- 281
++W L + L+ S ++ +K E+ P NS + T DND +W
Sbjct: 191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250
Query: 282 ---VCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGD 325
+ TL+ H + I + WCH + + + G D + NPE+ +
Sbjct: 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESAE 296
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 118 DATTAVWDKRSGQFECNATLEGHENEVKSVTW-SKNGQFLATCSRDKSVWVWEVGEEDEY 176
D + +WD R+ +GH+ + S+ W ++ L + RD +V +W +
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW---NPESA 295
Query: 177 ECAAVINAHIQDVKKVRFHP-FDNILASASYDDTVKL 212
E + A K +F P ++ A AS+D+ +++
Sbjct: 296 EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 295 DISWCHLTDLIATACGDDAIRIFKENPEAGDS--DMVSFDLVHTEHRAHNQDVNCVAWNP 352
D+ W H +IA A + ++ ++ N EA ++ M F H+ V V +N
Sbjct: 72 DLDWSHNNKIIAGALDNGSLELYSTN-EANNAINSMARF-------SNHSSSVKTVKFNA 123
Query: 353 VVPGMLASCSDDGDVKLWQI 372
+LAS ++G++ +W +
Sbjct: 124 KQDNVLASGGNNGEIFIWDM 143
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 95 GHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF-ECNATLEGHENEVKSVTWSKN 152
GH I E + P N + S S D +W+ ++ +EGH +EV S +
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 153 GQFLATCSRDKSVWVWEVGEE 173
G+ + +C D S+ +W + +
Sbjct: 168 GEKIMSCGMDHSLKLWRINSK 188
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWG----------KESF-------GNKFTA 88
++GH+ V + ++ G I SCG D +++LW KES+ F +
Sbjct: 152 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 211
Query: 89 KAI------LSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF----------E 132
+ I D H+ + W G+ I S S + W + G+ E
Sbjct: 212 QKIHFPDFSTRDIHRNYVDCVRW--LGDLILSKSCENAIVCW--KPGKMEDDIDKIKPSE 267
Query: 133 CNATLEGHENEVKSVTWSKN------GQFLATCSRDKSVWVWEVGEEDEYECAAVINAH 185
N T+ G + + W + LA ++ ++VW++ ED ++ H
Sbjct: 268 SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH 326
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 95 GHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF-ECNATLEGHENEVKSVTWSKN 152
GH I E + P N + S S D +W+ ++ +EGH +EV S +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 153 GQFLATCSRDKSVWVWEVGEE 173
G+ + +C D S+ +W + +
Sbjct: 172 GEKIMSCGMDHSLKLWRINSK 192
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWG----------KESF-------GNKFTA 88
++GH+ V + ++ G I SCG D +++LW KES+ F +
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 215
Query: 89 KAI------LSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF----------E 132
+ I D H+ + W G+ I S S + W + G+ E
Sbjct: 216 QKIHFPDFSTRDIHRNYVDCVRW--LGDLILSKSCENAIVCW--KPGKMEDDIDKIKPSE 271
Query: 133 CNATLEGHENEVKSVTWSKN------GQFLATCSRDKSVWVWEVGEEDEYECAAVINAH 185
N T+ G + + W + LA ++ ++VW++ ED ++ H
Sbjct: 272 SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH 330
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 95 GHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF-ECNATLEGHENEVKSVTWSKN 152
GH I E + P N + S S D +W+ ++ +EGH +EV S +
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 153 GQFLATCSRDKSVWVWEVGEE 173
G+ + +C D S+ +W + +
Sbjct: 173 GEKIMSCGMDHSLKLWRINSK 193
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWG----------KESF-------GNKFTA 88
++GH+ V + ++ G I SCG D +++LW KES+ F +
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 216
Query: 89 KAI------LSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF----------E 132
+ I D H+ + W G+ I S S + W + G+ E
Sbjct: 217 QKIHFPDFSTRDIHRNYVDCVRW--LGDLILSKSCENAIVCW--KPGKMEDDIDKIKPSE 272
Query: 133 CNATLEGHENEVKSVTWSKN------GQFLATCSRDKSVWVWEVGEEDEYECAAVINAH 185
N T+ G + + W + LA ++ ++VW++ ED ++ H
Sbjct: 273 SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH 331
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 95 GHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF-ECNATLEGHENEVKSVTWSKN 152
GH I E + P N + S S D +W+ ++ +EGH +EV S +
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 153 GQFLATCSRDKSVWVWEVGEE 173
G+ + +C D S+ +W + +
Sbjct: 209 GEKIMSCGMDHSLKLWRINSK 229
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWG----------KESF-------GNKFTA 88
++GH+ V + ++ G I SCG D +++LW KES+ F +
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 252
Query: 89 KAI------LSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF----------E 132
+ I D H+ + W G+ I S S + W + G+ E
Sbjct: 253 QKIHFPDFSTRDIHRNYVDCVRW--LGDLILSKSCENAIVCW--KPGKMEDDIDKIKPSE 308
Query: 133 CNATLEGHENEVKSVTWSKN------GQFLATCSRDKSVWVWEVGEEDEYECAAVINAH 185
N T+ G + + W + LA ++ ++VW++ ED ++ H
Sbjct: 309 SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH 367
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 95 GHQRTIRETAWSPCG-NFIASASFDATTAVWDKRSGQF-ECNATLEGHENEVKSVTWSKN 152
GH I E + P N + S S D +W+ ++ +EGH +EV S +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 153 GQFLATCSRDKSVWVWEVGEE 173
G+ + +C D S+ +W + +
Sbjct: 172 GEKIMSCGMDHSLKLWRINSK 192
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 43/179 (24%)
Query: 46 LKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWG----------KESF-------GNKFTA 88
++GH+ V + ++ G I SCG D +++LW KES+ F +
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 215
Query: 89 KAI------LSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQF----------E 132
+ I D H+ + W G+ I S S + W + G+ E
Sbjct: 216 QKIHFPDFSTRDIHRNYVDCVRW--LGDLILSKSCENAIVCW--KPGKMEDDIDKIKPSE 271
Query: 133 CNATLEGHENEVKSVTWSKN------GQFLATCSRDKSVWVWEVGEEDEYECAAVINAH 185
N T+ G + + W + LA ++ ++VW++ ED ++ H
Sbjct: 272 SNVTILGRFDYSQCDIWYMRFSTDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH 330
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 46 LKGHQGRVWNVSWNPQGTMIS-SCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETA 104
+ GH R+ M S + G+D ++ + F KF+A +R+
Sbjct: 156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF--KFSASDRTHHKQGSFVRDVE 213
Query: 105 WSP-CGNFIASASFDATTAVWDKRSGQF--ECNATLEGHENEVKSVTWSKNGQFLATCSR 161
+SP G F+ + D + +D +SG+F E + + +++W + +F AT
Sbjct: 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF-ATVGA 272
Query: 162 DKSVWVWEV 170
D ++ VW+V
Sbjct: 273 DATIRVWDV 281
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 49 HQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPC 108
H G V +V W+ G+ + + DK ++W S +AI H ++ W
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS------NQAIQIAQHDAPVKTIHWIKA 138
Query: 109 GNF--IASASFDATTAVWDKRS 128
N+ + + S+D T WD RS
Sbjct: 139 PNYSCVMTGSWDKTLKFWDTRS 160
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 73 NIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFE 132
++R W + G + H + + WS G+ + +AS D T +WD S Q
Sbjct: 65 DVRCWEVQDSGQTIPKAQQM---HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-- 119
Query: 133 CNATLEGHENEVKSVTWSKNGQF--LATCSRDKSVWVWEV 170
+ H+ VK++ W K + + T S DK++ W+
Sbjct: 120 -AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 109 GNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVW 168
GNF+ + S+ W+ + + H V V WS +G + T S DK+ +W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 169 EVGEEDEYECAAVINAHIQDVKKVRF--HPFDNILASASYDDTVKL 212
++ A I H VK + + P + + + S+D T+K
Sbjct: 114 DLSSNQ----AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 334 VHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
V + AH+ +VNCVA P + SC +DG + LW +
Sbjct: 173 VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 21/195 (10%)
Query: 33 ILCSRCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAIL 92
IL ++N H V +S GT S G+D ++++W + KA+L
Sbjct: 122 ILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW-------DLSQKAVL 174
Query: 93 S--DGHQRTIRETAWSPCGNFI-ASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTW 149
+ H + A P + I S D +WD R + + SVTW
Sbjct: 175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW 234
Query: 150 SKNGQFLATCSRDK-SVWVWEVGEEDEYECAAVINAHIQDVKKVRF----HPFDNILASA 204
C + +V + + D + +AV H Q++ + + PF LAS
Sbjct: 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV---HSQNITGLAYSYHSSPF---LASI 288
Query: 205 SYDDTVKLFKEDKAE 219
S D TV + D +E
Sbjct: 289 SEDCTVAVLDADFSE 303
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 333 LVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
+V + +RAH V CVA +P + SCS+D + LW +
Sbjct: 160 VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 67 SCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP-CGNFIASASFDATTAVWD 125
+ G+D ++ + F KF+A +R+ +SP G F+ + D + +D
Sbjct: 178 TVGDDGSVVFYQGPPF--KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235
Query: 126 KRSGQF--ECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV 170
+SG+F E + + +++W + +F AT D ++ VW+V
Sbjct: 236 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF-ATVGADATIRVWDV 281
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 22/159 (13%)
Query: 137 LEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQ--DVKKVRF 194
++ H N VK V ++ G +ATCS+D + + V + D + + +R+
Sbjct: 175 VKAHANPVKMVRLNRKGDMVATCSQDGT--LIRVFQTDNGVLVREFRRGLDRTSIIDMRW 232
Query: 195 HPFDNILASASYDDTVKLFK-----EDKAEA--DWINFATLKSHTSTVWSLAFDRI---- 243
P + LA S T+ +F+ E+K DWIN +S WS+ ++
Sbjct: 233 SPDGSKLAVVSDKWTLHVFEVFNDAENKRHVLKDWINIKYFQSE----WSICNFKLKVSK 288
Query: 244 GS---RLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVW 279
GS ++A SD V +W + ++ + D++ VW
Sbjct: 289 GSNDCKIAWISDTGLVIVWPNRRLADTFKLNYNDDEHVW 327
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 348 VAWNPVVPGMLASCSDDGDVKLWQI 372
+ WNP VP M+A C DG + + Q+
Sbjct: 155 MKWNPTVPSMVAVCLADGSIAVLQV 179
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 350 WNPVVPGMLASCSDDGDVKLWQI 372
WNP VP M+A C DG + + Q+
Sbjct: 157 WNPTVPSMVAVCLADGSIAVLQV 179
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 348 VAWNPVVPGMLASCSDDGDVKLWQI 372
+ WNP VP M+A C DG + + Q+
Sbjct: 155 MKWNPTVPSMVAVCLADGSIAVLQV 179
>pdb|1I36|A Chain A, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
pdb|1I36|B Chain B, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
Length = 264
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 147 VTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINA 184
V S G+ +T R ++V V E EED Y C VI+A
Sbjct: 26 VVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISA 63
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 74/204 (36%), Gaps = 18/204 (8%)
Query: 42 NSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIR 101
+++T H V V W P+ I +C +D+N ++ K G +L T
Sbjct: 47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATF- 105
Query: 102 ETAWSPCGNFIASASFDATTAV--WDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATC 159
WSP + A S +V +++ + + + + S+ W N LA
Sbjct: 106 -VRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164
Query: 160 SRDKSVWVWE--VGEEDEYECAAVINAHIQD------------VKKVRFHPFDNILASAS 205
D+ +V V + D A+V + + V V F P N LA A
Sbjct: 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG 224
Query: 206 YDDTVKLFKEDKAEADWINFATLK 229
+D +V + E T+K
Sbjct: 225 HDSSVTIAYPSAPEQPPRALITVK 248
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 46/103 (44%)
Query: 136 TLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFH 195
T H+ V V W+ + TCS+D++ +V+E + ++ V+ + VR+
Sbjct: 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109
Query: 196 PFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSL 238
P ++ A S + + ++ W++ + ST+ SL
Sbjct: 110 PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152
>pdb|3FCM|A Chain A, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
pdb|3FCM|B Chain B, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
Length = 197
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 260 KEYKPGNSAGIPTPDNDSVWKC-VCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFK 318
KE K PTP D + V T++GH R Y S HL C +D K
Sbjct: 90 KELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLXLK 149
Query: 319 ENPEAG 324
E+ +G
Sbjct: 150 EDENSG 155
>pdb|3LQ2|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ2|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With Low Tdp Concentration
pdb|3LQ4|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
pdb|3LQ4|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 E235a Mutant
With High Tdp Concentration
Length = 886
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 308 ACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDV---NCVAWNPVVPGMLASCSDD 364
A GD R F +G + + L H + +H Q + NC++++P +A D
Sbjct: 613 AAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHD 672
Query: 365 GDVKLWQIKLENL 377
G +++ K EN+
Sbjct: 673 GLERMYGEKQENV 685
>pdb|3LPL|A Chain A, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
pdb|3LPL|B Chain B, E. Coli Pyruvate Dehydrogenase Complex E1 Component E571a
Mutant
Length = 886
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 308 ACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDV---NCVAWNPVVPGMLASCSDD 364
A GD R F +G + + L H + +H Q + NC++++P +A D
Sbjct: 613 AAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHD 672
Query: 365 GDVKLWQIKLENL 377
G +++ K EN+
Sbjct: 673 GLERMYGEKQENV 685
>pdb|2QTA|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTA|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Thiamin Diphosphate
pdb|2QTC|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
pdb|2QTC|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component E401k Mutant
With Phosphonolactylthiamin Diphosphate
Length = 886
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 308 ACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDV---NCVAWNPVVPGMLASCSDD 364
A GD R F +G + + L H + +H Q + NC++++P +A D
Sbjct: 613 AAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHD 672
Query: 365 GDVKLWQIKLENL 377
G +++ K EN+
Sbjct: 673 GLERMYGEKQENV 685
>pdb|1L8A|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|1L8A|B Chain B, E. Coli Pyruvate Dehydrogenase
pdb|1RP7|A Chain A, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|1RP7|B Chain B, E. Coli Pyruvate Dehydrogenase Inhibitor Complex
pdb|2G25|A Chain A, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G25|B Chain B, E. Coli Pyruvate Dehydrogenase Phosphonolactylthiamin
Diphosphate Complex
pdb|2G28|A Chain A, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G28|B Chain B, E. Coli Pyruvate Dehydrogenase H407a Variant
Phosphonolactylthiamin Diphosphate Complex
pdb|2G67|A Chain A, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2G67|B Chain B, E. Coli Pyruvate Dehydrogenase E1 Component (Apoenzyme)
pdb|2IEA|A Chain A, E. Coli Pyruvate Dehydrogenase
pdb|2IEA|B Chain B, E. Coli Pyruvate Dehydrogenase
Length = 886
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 308 ACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDV---NCVAWNPVVPGMLASCSDD 364
A GD R F +G + + L H + +H Q + NC++++P +A D
Sbjct: 613 AAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHD 672
Query: 365 GDVKLWQIKLENL 377
G +++ K EN+
Sbjct: 673 GLERMYGEKQENV 685
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/266 (18%), Positives = 92/266 (34%), Gaps = 43/266 (16%)
Query: 74 IRLWGKESFGNKFTAKAILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFEC 133
+++W GNK + IR P G + +T ++WD +
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 134 NATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEV----------GEEDEYECAAVIN 183
A L ++ S + + +C D ++ VW++ G D C + N
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193
Query: 184 A----------------HIQDVKKVRFHPFDNILASASYDDTVKLF----KEDKAEADWI 223
+++ ++++ H F + + S Y T + + E +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253
Query: 224 NFA---TLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWK 280
N L H S V SL F G + D + W+ P ++ + ++ SV
Sbjct: 254 NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR--TPYGASIFQSKESSSVLS 311
Query: 281 C--------VCTLSGHHGRTIYDISW 298
C + T SG T+Y++ +
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYEVIY 337
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 334 VHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 376
+H ++ V + W+P P +A S GD+ LW ++N
Sbjct: 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN 107
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 19/138 (13%)
Query: 96 HQRTIRETAWSP-CGNFIASASFDATTAVWDKRSGQFECNATLE-GHENEVKSVTW--SK 151
H+ + ++P C +A++S DAT +WD R+ + + + E HE V + + +
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 152 NGQFLATCSRDK----SVWVWEVGEEDEYECAAVINAHIQ----DVKKVRFHPFDNILAS 203
+ + L T R++ S + W ++ +I+ H Q K +HP +++ +
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWSKPDQ------IIIHPHRQFQHLTPIKATWHPMYDLIVA 316
Query: 204 ASYDDTVKLFKEDKAEAD 221
Y D +L DK D
Sbjct: 317 GRYPDD-QLLLNDKRTID 333
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 334 VHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 376
+H ++ V + W+P P +A S GD+ LW ++N
Sbjct: 64 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN 106
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 19/138 (13%)
Query: 96 HQRTIRETAWSP-CGNFIASASFDATTAVWDKRSGQFECNATLE-GHENEVKSVTW--SK 151
H+ + ++P C +A++S DAT +WD R+ + + + E HE V + + +
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 152 NGQFLATCSRDK----SVWVWEVGEEDEYECAAVINAHIQ----DVKKVRFHPFDNILAS 203
+ + L T R++ S + W ++ +I+ H Q K +HP +++ +
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWSKPDQ------IIIHPHRQFQHLTPIKATWHPMYDLIVA 315
Query: 204 ASYDDTVKLFKEDKAEAD 221
Y D +L DK D
Sbjct: 316 GRYPDD-QLLLNDKRTID 332
>pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Subunit H Of The
V-Type Atpase Of Saccharomyces Cerevisiae
Length = 480
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 187 QDVKKVRFHPFDNILASASY-DDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIG 244
+D KK + +L+S Y DDTVK F+ED + + + +LK TV F+ +
Sbjct: 92 EDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVS 150
>pdb|1V7V|A Chain A, Crystal Structure Of Vibrio Proteolyticus Chitobiose
Phosphorylase
pdb|1V7W|A Chain A, Crystal Structure Of Vibrio Proteolyticus Chitobiose
Phosphorylase In Complex With Glcnac
pdb|1V7X|A Chain A, Crystal Structure Of Vibrio Proteolyticus Chitobiose
Phosphorylase In Complex With Glcnac And Sulfate
Length = 807
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 56/148 (37%), Gaps = 17/148 (11%)
Query: 115 ASFDATTAVWDKRSGQFECNATLEGHENEVKS---------VTWSKNGQFLATCSRDKSV 165
A+F A A WD+R +F+ + +G + + + V WS+ F+ R
Sbjct: 288 AAFAAIKAHWDERCAKFQVKSPNQGLDTMINAWTLYQAETCVVWSRFASFIEVGGRTG-- 345
Query: 166 WVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINF 225
+G D + A + ++ + R A Y + LF D + + +
Sbjct: 346 ----LGYRDTAQDAISVPHANPEMTRKRIVDLLRGQVKAGY--GLHLFDPDWFDPEKEDV 399
Query: 226 ATLKSHTSTVWSLAFDRIGSRLATCSDD 253
A KS T D+I TCSDD
Sbjct: 400 APSKSPTVVPTPSDEDKIHGIKDTCSDD 427
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
pdb|2HKE|B Chain B, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
Length = 380
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 254 ATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDA 313
A +K W + + G + +PT D+ S+ TLS R+ + L D I T D
Sbjct: 15 AFIKYWGKREGGETLILPTNDSFSI-----TLSASPFRSKTSV---ELRDDIET----DT 62
Query: 314 IRIFKENPEAGDSDMVSFDLVHTE----HRAHNQDVNCVAWN--PVVPGMLASCS 362
+R+ + G + V L+H N+ VN V+ N P GM +S S
Sbjct: 63 LRLNGTEVDVGKTPRVQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSAS 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,689,628
Number of Sequences: 62578
Number of extensions: 529142
Number of successful extensions: 2658
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 561
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)