RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18091
(377 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 205 bits (524), Expect = 6e-64
Identities = 105/330 (31%), Positives = 162/330 (49%), Gaps = 41/330 (12%)
Query: 42 NSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTIR 101
+TLKGH G V V+++P G ++++ D I++W E+ T K GH +R
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-----GHTGPVR 55
Query: 102 ETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSR 161
+ A S G ++AS S D T +WD +G EC TL GH + V SV +S +G+ L++ SR
Sbjct: 56 DVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113
Query: 162 DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEAD 221
DK++ VW+V + +C + H V V F P +AS+S D T+KL+ +
Sbjct: 114 DKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC- 169
Query: 222 WINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKC 281
ATL HT V S+AF G +L + S D T+K+W + S KC
Sbjct: 170 ---VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW---------------DLSTGKC 211
Query: 282 VCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAH 341
+ TL G H + +++ L+A+ D IR++ D+ + + V T H
Sbjct: 212 LGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVW---------DLRTGECVQT-LSGH 260
Query: 342 NQDVNCVAWNPVVPGMLASCSDDGDVKLWQ 371
V +AW+P LAS S DG +++W
Sbjct: 261 TNSVTSLAWSP-DGKRLASGSADGTIRIWD 289
Score = 133 bits (338), Expect = 1e-36
Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 34/241 (14%)
Query: 133 CNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKV 192
TL+GH V V +S +G+ LAT S D ++ VW++ + E + H V+ V
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL---ETGELLRTLKGHTGPVRDV 57
Query: 193 RFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSD 252
LAS S D T++L+ + E TL HTS V S+AF G L++ S
Sbjct: 58 AASADGTYLASGSSDKTIRLWDLETGEC----VRTLTGHTSYVSSVAFSPDGRILSSSSR 113
Query: 253 DATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDD 312
D T+K+W + T KC+ TL GH + +++ +A++ D
Sbjct: 114 DKTIKVWD---------VETG------KCLTTLRGHTD-WVNSVAFSPDGTFVASSSQDG 157
Query: 313 AIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 372
I+++ D+ + V T H +VN VA++P L S S DG +KLW +
Sbjct: 158 TIKLW---------DLRTGKCVAT-LTGHTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDL 206
Query: 373 K 373
Sbjct: 207 S 207
Score = 45.4 bits (108), Expect = 2e-05
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 281 CVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRA 340
TL GH G + +++ L+AT GD I+++ D+ + +L+ T +
Sbjct: 1 LRRTLKGHTGG-VTCVAFSPDGKLLATGSGDGTIKVW---------DLETGELLRTL-KG 49
Query: 341 HNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLENL 377
H V VA + LAS S D ++LW ++
Sbjct: 50 HTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGEC 85
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 127 bits (318), Expect = 1e-32
Identities = 86/341 (25%), Positives = 156/341 (45%), Gaps = 39/341 (11%)
Query: 41 INSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRTI 100
++S L+GH+ + +++++P G ++ S D I+LW N L H ++
Sbjct: 56 LSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLW---DLDNGEKLIKSLEGLHDSSV 112
Query: 101 RETAW-SPCGNFIASA--SFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
+ A SP GN I A S D T +WD S + TLEGH V S+ +S +G+ LA
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDL-STPGKLIRTLEGHSESVTSLAFSPDGKLLA 171
Query: 158 TCSR-DKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDN-ILASASYDDTVKLFKE 215
+ S D ++ +W++ + + + H V + F P ++AS S D T++L+
Sbjct: 172 SGSSLDGTIKLWDL---RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228
Query: 216 DKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDN 275
+ + +TL H+ +V S +F GS LA+ S D T+++W D
Sbjct: 229 STGK---LLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLW--------------DL 270
Query: 276 DSVWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVH 335
S + TLSGH + +++ L+A+ D +R++ L
Sbjct: 271 RSSSSLLRTLSGHSSS-VLSVAFSPDGKLLASGSSDGTVRLWDLET--------GKLLSS 321
Query: 336 TEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 376
+ H V+ ++++P +++ SDDG ++LW ++
Sbjct: 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362
Score = 117 bits (294), Expect = 2e-29
Identities = 86/336 (25%), Positives = 143/336 (42%), Gaps = 42/336 (12%)
Query: 41 INSQTLKGHQGRVWNVSWNPQGTMI-SSCGEDKNIRLWGKESFGNKFTAKAILSDGHQRT 99
+TL+GH V +++++P G ++ S D I+LW + T GH
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST-----LAGHTDP 200
Query: 100 IRETAWSPCGNF-IASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLAT 158
+ A+SP G IAS S D T +WD +G+ +TL GH + V S +S +G LA+
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK-LLRSTLSGHSDSVVSS-FSPDGSLLAS 258
Query: 159 CSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKA 218
S D ++ +W++ ++ H V V F P +LAS S D TV+L+ D
Sbjct: 259 GSSDGTIRLWDL--RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW--DLE 314
Query: 219 EADWINFATLKSHTSTVWSLAFDRIGSRLAT-CSDDATVKIWKEYKPGNSAGIPTPDNDS 277
++ TLK H V SL+F GS L + SDD T+++W +
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL------- 367
Query: 278 VWKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTE 337
+ +S+ ++++ D +R++ +S +
Sbjct: 368 ----------EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWD----------LSTGSLLRN 407
Query: 338 HRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
H V + ++P LAS S D ++LW +K
Sbjct: 408 LDGHTSRVTSLDFSPD-GKSLASGSSDNTIRLWDLK 442
Score = 109 bits (272), Expect = 2e-26
Identities = 67/225 (29%), Positives = 106/225 (47%), Gaps = 14/225 (6%)
Query: 37 RCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGH 96
+ TL GH V + S++P G++++S D IRLW S + GH
Sbjct: 229 STGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLR----TLSGH 283
Query: 97 QRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFL 156
++ A+SP G +AS S D T +WD +G+ + TL+GHE V S+++S +G L
Sbjct: 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343
Query: 157 AT-CSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKE 215
+ S D ++ +W++ + +V V F P +++S S D TV+L+
Sbjct: 344 VSGGSDDGTIRLWDLRTGKPLKT----LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL 399
Query: 216 DKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWK 260
L HTS V SL F G LA+ S D T+++W
Sbjct: 400 STGS----LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
Score = 100 bits (248), Expect = 3e-23
Identities = 87/335 (25%), Positives = 147/335 (43%), Gaps = 44/335 (13%)
Query: 49 HQGRVWNVSW-NPQGTMISSCGE--DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAW 105
H V ++ +P G I D ++LW + G +GH ++ A+
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL----IRTLEGHSESVTSLAF 163
Query: 106 SPCGNFIASAS-FDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQF-LATCSRDK 163
SP G +AS S D T +WD R+G + +TL GH + V S+ +S +G +A+ S D
Sbjct: 164 SPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221
Query: 164 SVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWI 223
++ +W++ + ++ H V F P ++LAS S D T++L+ +
Sbjct: 222 TIRLWDL--STGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWD---LRSSSS 275
Query: 224 NFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVC 283
TL H+S+V S+AF G LA+ S D TV++W
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL-------------ETGKLLSSL 322
Query: 284 TLSGHHGRTIYDISWCHLTDLIATACGDDA-IRIFKENPEAGDSDMVSFDLVHTEHRAHN 342
TL GH + +S+ L+ + DD IR++ D+ + + T N
Sbjct: 323 TLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTIRLW---------DLRTGKPLKTLEGHSN 372
Query: 343 QDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLENL 377
V V+++P +++S S DG V+LW + +L
Sbjct: 373 --VLSVSFSPDGR-VVSSGSTDGTVRLWDLSTGSL 404
Score = 83.6 bits (205), Expect = 1e-17
Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 10/187 (5%)
Query: 29 GTNLILCSRCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTA 88
GT + R +TL GH V +V+++P G +++S D +RLW
Sbjct: 263 GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW---DLETGKLL 319
Query: 89 KAILSDGHQRTIRETAWSPCGNFIASA-SFDATTAVWDKRSGQFECNATLEGHENEVKSV 147
++ GH+ + ++SP G+ + S S D T +WD R+G+ + V SV
Sbjct: 320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEGHSNVLSV 376
Query: 148 TWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQDVKKVRFHPFDNILASASYD 207
++S +G+ +++ S D +V +W++ ++ H V + F P LAS S D
Sbjct: 377 SFSPDGRVVSSGSTDGTVRLWDL---STGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSD 433
Query: 208 DTVKLFK 214
+T++L+
Sbjct: 434 NTIRLWD 440
Score = 50.5 bits (119), Expect = 9e-07
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 19/135 (14%)
Query: 31 NLILCSRCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKA 90
I V +VS++P G ++SS D +RLW +
Sbjct: 351 GTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN--- 407
Query: 91 ILSDGHQRTIRETAWSPCGNFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWS 150
DGH + +SP G +AS S D T +WD ++ +KSV++S
Sbjct: 408 --LDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT--------------SLKSVSFS 451
Query: 151 KNGQFLATCSRDKSV 165
+G+ LA+ S D SV
Sbjct: 452 PDGKVLASKSSDLSV 466
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 48.8 bits (117), Expect = 3e-08
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 130 QFECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVWE 169
E TL+GH V SV +S +G++LA+ S D ++ +W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 45.4 bits (108), Expect = 6e-07
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW 77
+TLKGH G V +V+++P G ++S +D I+LW
Sbjct: 6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 44.2 bits (105), Expect = 1e-06
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 226 ATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWK 260
TLK HT V S+AF G LA+ SDD T+K+W
Sbjct: 6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 38.1 bits (89), Expect = 2e-04
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 339 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 370
+ H V VA++P LAS SDDG +KLW
Sbjct: 9 KGHTGPVTSVAFSPDGK-YLASGSDDGTIKLW 39
Score = 37.3 bits (87), Expect = 3e-04
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 177 ECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
E + H V V F P LAS S D T+KL+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 35.0 bits (81), Expect = 0.003
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 94 DGHQRTIRETAWSPCGNFIASASFDATTAVWD 125
GH + A+SP G ++AS S D T +WD
Sbjct: 9 KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 34.6 bits (80), Expect = 0.004
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 279 WKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFK 318
+ + TL GH G + +++ +A+ D I+++
Sbjct: 2 GELLKTLKGHTGP-VTSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 47.3 bits (113), Expect = 1e-07
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 131 FECNATLEGHENEVKSVTWSKNGQFLATCSRDKSVWVW 168
+ TL+GH V SV +S +G LA+ S D +V VW
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 45.8 bits (109), Expect = 3e-07
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 44 QTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW 77
+TLKGH G V +V+++P G +++S +D +R+W
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 44.7 bits (106), Expect = 9e-07
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 226 ATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWK 260
TLK HT V S+AF G+ LA+ SDD TV++W
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 39.6 bits (93), Expect = 6e-05
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 334 VHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLW 370
+ + H V VA++P +LAS SDDG V++W
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVW 38
Score = 37.3 bits (87), Expect = 4e-04
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 177 ECAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFK 214
+ + H V V F P N+LAS S D TV+++
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 35.4 bits (82), Expect = 0.002
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 94 DGHQRTIRETAWSPCGNFIASASFDATTAVWD 125
GH + A+SP GN +AS S D T VWD
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 33.1 bits (76), Expect = 0.011
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 279 WKCVCTLSGHHGRTIYDISWCHLTDLIATACGDDAIRIFK 318
K + TL GH G + +++ +L+A+ D +R++
Sbjct: 1 GKLLRTLKGHTGP-VTSVAFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 49.2 bits (117), Expect = 2e-06
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 19/125 (15%)
Query: 46 LKGHQGRVWNVSWNP-QGTMISSCGEDKNIRLW----GKESFGNKFTAKAILSDGHQRTI 100
LKGH + ++ +NP +++S ED IR+W ES + IL GH++ I
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKI 128
Query: 101 RETAWSPCGNFI-ASASFDATTAVWD----KRSGQFECNATLEGHENEVKSVTWSKNGQF 155
W+P +I S+ FD+ +WD KR+ F+ N ++ S+ W+ G
Sbjct: 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--FQINMP-----KKLSSLKWNIKGNL 181
Query: 156 LA-TC 159
L+ TC
Sbjct: 182 LSGTC 186
Score = 39.9 bits (93), Expect = 0.002
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 17/91 (18%)
Query: 228 LKSHTSTVWSLAFDRIGSR-LATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCV---- 282
LK HTS++ L F+ S LA+ S+D T+++W+ P ND K +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWE-----------IPHNDESVKEIKDPQ 118
Query: 283 CTLSGHHGRTIYDISWCHLTDLIATACGDDA 313
C L GH + I I W + I + G D+
Sbjct: 119 CILKGHK-KKISIIDWNPMNYYIMCSSGFDS 148
Score = 36.1 bits (83), Expect = 0.027
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 154 QFLATCSRDKSVWVWEVGEEDE-----YECAAVINAHIQDVKKVRFHPFDN-ILASASYD 207
+ LA+ S D ++ VWE+ DE + ++ H + + + ++P + I+ S+ +D
Sbjct: 88 EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147
Query: 208 DTVKLFK-EDKAEADWINFATLKSHTSTVWSL 238
V ++ E++ A IN K +S W++
Sbjct: 148 SFVNIWDIENEKRAFQINMP--KKLSSLKWNI 177
Score = 30.3 bits (68), Expect = 2.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 339 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLEN 376
+ H + + +NP +LAS S+D +++W+I +
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHND 108
Score = 29.5 bits (66), Expect = 3.5
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 339 RAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIKLE 375
+ H + ++ + WNP+ ++ S D V +W I+ E
Sbjct: 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE 158
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 46.8 bits (111), Expect = 1e-05
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 25/175 (14%)
Query: 139 GHENEVKSVTWSK-NGQFLATCSRDKSVWVWEVGEED-EYECAAVI---NAHIQDVKKVR 193
G E + V ++ + Q L T S D ++ W + EE + I H + V V
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132
Query: 194 FHP-FDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSD 252
FHP N+LASA D V ++ ++ +A +K H+ + SL ++ GS L T S
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAV----EVIKCHSDQITSLEWNLDGSLLCTTSK 188
Query: 253 DATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIAT 307
D + I P + V ++ H W DLI T
Sbjct: 189 DKKLNI---IDPRDG------------TIVSSVEAHASAKSQRCLWAKRKDLIIT 228
Score = 44.5 bits (105), Expect = 6e-05
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 42 NSQTLKGHQGRVWNVSWNP-QGTMISSCGEDKNIRLWG--KESFGNKFTAKAILSDGHQR 98
N L G +G + +V++NP + + ED I WG +E + + GH +
Sbjct: 67 NPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK 126
Query: 99 TIRETAWSPCG-NFIASASFDATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLA 157
+ ++ P N +ASA D VWD G+ ++ H +++ S+ W+ +G L
Sbjct: 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCHSDQITSLEWNLDGSLLC 184
Query: 158 TCSRDKSV 165
T S+DK +
Sbjct: 185 TTSKDKKL 192
Score = 29.5 bits (66), Expect = 3.7
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 321 PEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQIK 373
PE G + +S +VH + H + V V+++P +LAS D V +W ++
Sbjct: 106 PEEGLTQNISDPIVHL--QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 40.1 bits (93), Expect = 0.002
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 214 KEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAGIPTP 273
K D + D +N + L V ++ FDR G AT + +KI++ S
Sbjct: 471 KADLKQGDLLNSSNL------VCAIGFDRDGEFFATAGVNKKIKIFE----CESI---IK 517
Query: 274 DNDSVWKCVCTLSGHHGRTIYDISW-CHLTDLIATACGDDAIRIFKENPEAGDSDMVSFD 332
D + V L+ + I W ++ +A++ + ++++ D+
Sbjct: 518 DGRDIHYPVVELASR--SKLSGICWNSYIKSQVASSNFEGVVQVW---------DVARSQ 566
Query: 333 LVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGDVKLWQI 372
LV TE + H + V + ++ P +LAS SDDG VKLW I
Sbjct: 567 LV-TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605
Score = 34.3 bits (78), Expect = 0.13
Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 55/248 (22%)
Query: 142 NEVKSVTWSKNGQFLATCSRDKSVWVWEVGEEDEYECAAVIN----AHIQDVKKVRFHPF 197
N V ++ + ++G+F AT +K + + +EC ++I H V+
Sbjct: 484 NLVCAIGFDRDGEFFATAGVNKKIKI--------FECESIIKDGRDIHYPVVELASRSKL 535
Query: 198 DNI---------LASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIG-SRL 247
I +AS++++ V+++ D A + + +K H VWS+ + + L
Sbjct: 536 SGICWNSYIKSQVASSNFEGVVQVW--DVARSQLVT--EMKEHEKRVWSIDYSSADPTLL 591
Query: 248 ATCSDDATVKIWKEYKPGNSAGIPTPDNDSVWKCVCTLSGHHGRTIYDISWCHLTDLIAT 307
A+ SDD +VK+W + + I T N C GR+ +A
Sbjct: 592 ASGSDDGSVKLWSINQGVSIGTIKTKAN----ICCVQFPSESGRS------------LAF 635
Query: 308 ACGDDAIRIFK-ENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCSDDGD 366
D + + NP+ M+ H++ V+ V + V L S S D
Sbjct: 636 GSADHKVYYYDLRNPKLPLCTMI----------GHSKTVSYVRF--VDSSTLVSSSTDNT 683
Query: 367 VKLWQIKL 374
+KLW + +
Sbjct: 684 LKLWDLSM 691
Score = 33.9 bits (77), Expect = 0.16
Identities = 56/239 (23%), Positives = 99/239 (41%), Gaps = 47/239 (19%)
Query: 39 EMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLWGKESFGNKFTAKAILSDGH-- 96
+++NS L V + ++ G ++ G +K I++ F ++I+ DG
Sbjct: 478 DLLNSSNL------VCAIGFDRDGEFFATAGVNKKIKI---------FECESIIKDGRDI 522
Query: 97 -----QRTIRETAWSPCGNF-----IASASFDATTAVWDKRSGQFECNATLEGHENEVKS 146
+ R C N +AS++F+ VWD Q ++ HE V S
Sbjct: 523 HYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV--TEMKEHEKRVWS 580
Query: 147 VTWSK-NGQFLATCSRDKSVWVWEVGEEDEYECAAVINAHIQ---DVKKVRFHPFDN--I 200
+ +S + LA+ S D SV +W + + V I+ ++ V+F P ++
Sbjct: 581 IDYSSADPTLLASGSDDGSVKLWSINQ-------GVSIGTIKTKANICCVQF-PSESGRS 632
Query: 201 LASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWSLAFDRIGSRLATCSDDATVKIW 259
LA S D V + + + T+ H+ TV + F S L + S D T+K+W
Sbjct: 633 LAFGSADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVD-SSTLVSSSTDNTLKLW 687
Score = 31.2 bits (70), Expect = 1.0
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 303 DLIATACGDDAIRIFKENPEAGDSDMVSFDLVHTEHRAHNQDVNCVAWNPVVPGMLASCS 362
+ ATA + I+IF+ D + + +V R+ ++ + WN + +AS +
Sbjct: 496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRS---KLSGICWNSYIKSQVASSN 552
Query: 363 DDGDVKLWQIKLENL 377
+G V++W + L
Sbjct: 553 FEGVVQVWDVARSQL 567
>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A.
This is a family of eukaryotic translation initiation
factors.
Length = 194
Score = 36.1 bits (84), Expect = 0.013
Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 23/130 (17%)
Query: 50 QGRVWNVSWNPQGTMISSC-GE-DKNIRLWGKESFGNKFTAKAILSDGHQRTIRETAWSP 107
+G + + +W+P G + G I F K L + + TI WSP
Sbjct: 59 EGPIHDFAWSPNGKEFAVIYGYMPAKITF-----FDLKGNVIHSLGEQPRNTIF---WSP 110
Query: 108 CGNFIASASF---DATTAVWDKRSGQFECNATLEGHENEVKSVTWSKNGQFLATCSR--- 161
G + A F WD ++ + AT E N WS +G++ T +
Sbjct: 111 FGRLVLLAGFGNLAGQIEFWDVKN--KKKIATAE-ASNAT-DCEWSPDGRYFLTATTSPR 166
Query: 162 ---DKSVWVW 168
D +W
Sbjct: 167 LRVDNGFKIW 176
>gnl|CDD|179892 PRK04922, tolB, translocation protein TolB; Provisional.
Length = 433
Score = 33.9 bits (78), Expect = 0.12
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 93 SDGHQ-RTIRET-------AWSPCGNFIASASFD---ATTAVWDKRSGQFECNATLEGHE 141
SDG+ +TI + AWSP G +A SF+ + V D +GQ E A+ G
Sbjct: 191 SDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG-I 249
Query: 142 NEVKSVTWSKNGQFLA-TCSRD 162
N S +S +G+ LA T SRD
Sbjct: 250 NGAPS--FSPDGRRLALTLSRD 269
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase
4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. YSK4 is a
putative MAPKKK, whose mammalian gene has been isolated.
MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals.
Length = 265
Score = 29.5 bits (66), Expect = 2.5
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 19/90 (21%)
Query: 178 CAAVINAHIQDVKKVRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSHTSTVWS 237
C + VK+V + + A Y+ KL +E LKS
Sbjct: 18 CGLTNQGQLIAVKQVELDTSNVLAAEKEYE---KLQEE---------VDLLKS------- 58
Query: 238 LAFDRIGSRLATCSDDATVKIWKEYKPGNS 267
L I L TC DD T+ I+ E+ PG S
Sbjct: 59 LKHVNIVQYLGTCLDDNTISIFMEFVPGGS 88
>gnl|CDD|179329 PRK01742, tolB, translocation protein TolB; Provisional.
Length = 429
Score = 29.8 bits (67), Expect = 2.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 104 AWSPCGNFIASASFD---ATTAVWDKRSGQFECNATLEGH 140
AWSP G+ +A SF+ + V D RSG + A+ GH
Sbjct: 210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH 249
>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain.
Length = 90
Score = 27.2 bits (61), Expect = 4.2
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
Query: 131 FECNATLEGHENEVKSVTWSKNGQFLATCSRDK--------SVWVWEVGEEDE--YECAA 180
F C T + +V+W K+GQ L + R K ++ + V +DE Y C A
Sbjct: 20 FTCTVT----GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVA 75
>gnl|CDD|234897 PRK01096, PRK01096, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 440
Score = 28.7 bits (65), Expect = 4.9
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 17/61 (27%)
Query: 287 GHHGRTIYDISWCHLTDL---IATAC-------------GDDAIRI-FKENPEAGDSDMV 329
G + W D+ + +AC G+DAIR F++ G D +
Sbjct: 81 GETLKEEKLPDWISPADIGAIVQSACLAHDIGNPPFGHFGEDAIREWFQDAAGRGFLDDL 140
Query: 330 S 330
S
Sbjct: 141 S 141
>gnl|CDD|226301 COG3778, COG3778, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 188
Score = 28.3 bits (63), Expect = 5.2
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 12/84 (14%)
Query: 197 FDNILASASYDDTVKLFKEDKAEAD------------WINFATLKSHTSTVWSLAFDRIG 244
F I A+A YD T+ + +A W+ + + T + D G
Sbjct: 98 FIRIAAAAGYDITITEYDPFRAGVSRCTDALNPQEWMWVWHVNIPATTIYRFMTCLDDAG 157
Query: 245 SRLATCSDDATVKIWKEYKPGNSA 268
L D + KP ++
Sbjct: 158 DPLRIYEDKVLECLLNRLKPAHTY 181
>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat
protein TolB. Members of this protein family are the
TolB periplasmic protein of Gram-negative bacteria. TolB
is part of the Tol-Pal (peptidoglycan-associated
lipoprotein) multiprotein complex, comprising five
envelope proteins, TolQ, TolR, TolA, TolB and Pal, which
form two complexes. The TolQ, TolR and TolA
inner-membrane proteins interact via their transmembrane
domains. The {beta}-propeller domain of the periplasmic
protein TolB is responsible for its interaction with
Pal. TolB also interacts with the outer-membrane
peptidoglycan-associated proteins Lpp and OmpA. TolA
undergoes a conformational change in response to changes
in the proton-motive force, and interacts with Pal in an
energy-dependent manner. The C-terminal periplasmic
domain of TolA also interacts with the N-terminal domain
of TolB. The Tol-PAL system is required for bacterial
outer membrane integrity. E. coli TolB is involved in
the tonB-independent uptake of group A colicins
(colicins A, E1, E2, E3 and K), and is necessary for the
colicins to reach their respective targets after initial
binding to the bacteria. It is also involved in uptake
of filamentous DNA. Study of its structure suggest that
the TolB protein might be involved in the recycling of
peptidoglycan or in its covalent linking with
lipoproteins. The Tol-Pal system is also implicated in
pathogenesis of E. coli, Haemophilus ducreyi ,
Salmonella enterica and Vibrio cholerae, but the
mechanism(s) is unclear [Transport and binding proteins,
Other, Cellular processes, Pathogenesis].
Length = 417
Score = 28.8 bits (65), Expect = 5.7
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 93 SDGH-QRTI---RET----AWSPCGNFIASASFDATTA---VWDKRSGQFECNATLEGHE 141
DG +TI RE AWSP G +A SF++ V D +GQ E A+ G
Sbjct: 177 YDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGM- 235
Query: 142 NEVKSVTWSKNGQFLA-TCSRD 162
+ +S +G LA + S+D
Sbjct: 236 --NGAPAFSPDGSKLAVSLSKD 255
>gnl|CDD|218251 pfam04762, IKI3, IKI3 family. Members of this family are
components of the elongator multi-subunit component of a
novel RNA polymerase II holoenzyme for transcriptional
elongation. This region contains WD40 like repeats.
Length = 903
Score = 28.8 bits (65), Expect = 6.5
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 104 AWSPCGNFIASA--SFDATTAVWDKRSG----QFECNATLEGHENEVKSVTWSKNGQFLA 157
+W P GN IAS D V+ +R+G +F E +V S+ W+ + + LA
Sbjct: 249 SWRPSGNLIASIQRLPDRLDVVFFERNGLRHGEFT---LRLPEEEKVISLEWNSDSEVLA 305
Query: 158 TCSRDKSVWVWEVG 171
D+ V +W G
Sbjct: 306 VSLEDR-VQLWTTG 318
>gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional.
Length = 248
Score = 28.2 bits (63), Expect = 6.8
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 192 VRFHPFDNILASASYDDTVKLFKEDKAEADWINFATLKSH 231
VRF D+ A +Y +TV L ED +EA W ATL +H
Sbjct: 188 VRFKG-DDGKAEKTYQNTVALTPEDVSEAVWW-VATLPAH 225
>gnl|CDD|182156 PRK09939, PRK09939, putative oxidoreductase; Provisional.
Length = 759
Score = 28.5 bits (63), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 236 WSLAFDRIGSRLATCSDDATVKIWKEYKPGNSAG 269
W AFD IG+RL + SD V+ + + N A
Sbjct: 127 WQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAA 160
>gnl|CDD|234733 PRK00347, PRK00347, putative DNA-binding transcriptional regulator;
Reviewed.
Length = 234
Score = 27.9 bits (63), Expect = 8.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 143 EVKSVTWSKNGQ 154
EVKSVT +NG
Sbjct: 134 EVKSVTLEENGL 145
>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase. This model describes
glycerol kinase, a member of the FGGY family of
carbohydrate kinases [Energy metabolism, Other].
Length = 493
Score = 28.0 bits (63), Expect = 9.2
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 15/44 (34%)
Query: 120 TTAVWDKRSGQFECNATL---------------EGHENEVKSVT 148
TT VWDK +G+ NA + EG+ ++ T
Sbjct: 82 TTVVWDKATGKPLYNAIVWQDRRTASICEELKAEGYGEFIREKT 125
>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
(Trep_dent_lipo). This entry represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 394
Score = 28.0 bits (62), Expect = 9.5
Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 24/153 (15%)
Query: 18 PKTIPSTENLTGTNLILCSRCEMINSQTLKGHQGRVWNVSWNPQGTMISSCGEDKNIRLW 77
P ++T I RC ++ + + + + G + +K+ L+
Sbjct: 240 DDPDPELYDITWKQFIERVRCFIVEEDKII----KDYYIY-FRGGIFLP--AYEKSSSLY 292
Query: 78 GKESFGNKFTAKAILSDGHQRTIRE---TAWSPCGNFIASASFDATTAVWDKRSGQFECN 134
G +FG +F+ + +D +Q I E + G + F DK F
Sbjct: 293 GITNFGFQFSQGWV-ADFNQNGINEIYVYFFWKGGVRLFMIEFI------DKD---FV-T 341
Query: 135 ATLEGHENEVKSVTWSK---NGQFLATCSRDKS 164
+ G +++ SV W K NG + + +DKS
Sbjct: 342 GYIYGLGDDIVSVDWYKKKINGNYYSIILKDKS 374
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.424
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,586,514
Number of extensions: 1667138
Number of successful extensions: 1359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1248
Number of HSP's successfully gapped: 56
Length of query: 377
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 279
Effective length of database: 6,590,910
Effective search space: 1838863890
Effective search space used: 1838863890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)