BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18092
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NK57|NIF3L_DROME NIF3-like protein 1 OS=Drosophila melanogaster GN=anon-35F/36A PE=2
SV=3
Length = 292
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%)
Query: 108 STHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLL 167
S HV + + +I S+ +CAGSG LL+G +ADL ITGEMSHH+VL+ TH TTVLL
Sbjct: 172 SVHVALAVGHTPKTLIQSVGICAGSGASLLKGIQADLIITGEMSHHEVLEFTHNNTTVLL 231
Query: 168 LEHSDSERPFLQFF 181
HS+SER FL F
Sbjct: 232 CNHSNSERGFLHEF 245
>sp|Q9EQ80|NIF3L_MOUSE NIF3-like protein 1 OS=Mus musculus GN=Nif3l1 PE=1 SV=4
Length = 376
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 47/59 (79%)
Query: 120 EIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
E + +A+CAGSGG +L+G +ADLY+TGEMSHHDVLDA +G V+L EHS++ER FL
Sbjct: 288 ESQVKVVALCAGSGGSVLQGVEADLYLTGEMSHHDVLDAASKGINVILCEHSNTERGFL 346
>sp|Q4V7D6|NIF3L_RAT NIF3-like protein 1 OS=Rattus norvegicus GN=Nif3l1 PE=2 SV=1
Length = 376
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 46/56 (82%)
Query: 123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
+ +A+CAGSGG +L+G +ADLY+TGEMSHHDVLDA +G V+L EHS++ER FL
Sbjct: 291 VKVVALCAGSGGSVLQGVEADLYLTGEMSHHDVLDAASKGINVILCEHSNTERGFL 346
>sp|Q05B89|NIF3L_BOVIN NIF3-like protein 1 OS=Bos taurus GN=NIF3L1 PE=2 SV=1
Length = 377
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 45/56 (80%)
Query: 123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
+ +A+CAGSG +L+G ADLY+TGEMSHHDVLDA +G +V+L EHS++ER FL
Sbjct: 292 VKVVALCAGSGSSVLQGTDADLYLTGEMSHHDVLDAASQGISVILCEHSNTERGFL 347
>sp|Q9GZT8|NIF3L_HUMAN NIF3-like protein 1 OS=Homo sapiens GN=NIF3L1 PE=1 SV=2
Length = 377
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 120 EIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
E + +A+CAGSG +L+G +ADLY+TGEMSHHD LDA +G V+L EHS++ER FL
Sbjct: 289 ESQVKVVALCAGSGSSVLQGVEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGFL 347
>sp|Q55E83|NIF3_DICDI Protein NIF3 homolog OS=Dictyostelium discoideum GN=nif3 PE=2 SV=1
Length = 354
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 45/56 (80%)
Query: 123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFL 178
I +I++CAGSGG ++ KADLY+TGE++HH +LDA +G+ V++ +HS+SER +L
Sbjct: 268 IKTISLCAGSGGSVVFNAKADLYLTGELTHHAILDACAKGSYVIVCDHSNSERDYL 323
>sp|P53081|NIF3_YEAST NGG1-interacting factor 3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NIF3 PE=1 SV=1
Length = 288
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 112 LIKDSDLDEIMINSIAVCAGSGGELLRGKK--ADLYITGEMSHHDVLDATHRGTTVLLLE 169
L S +++ I +AVCAGSG + + K DLY TGEMSHH+VL G TV++
Sbjct: 192 LAAPSAWNQLKIKKVAVCAGSGSGVFKQLKEDVDLYYTGEMSHHEVLKWKEMGKTVIVCN 251
Query: 170 HSDSERPFLQ 179
HS++ER FLQ
Sbjct: 252 HSNTERGFLQ 261
>sp|O94404|NIF3_SCHPO Protein NIF3 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPCC126.12 PE=3 SV=1
Length = 278
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 123 INSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQ 179
I+ +++CAGSGG ++ ADLY TGE+SHH VL A +G +V+L HS++ER +L+
Sbjct: 189 ISKVSLCAGSGGSVVMNTDADLYFTGELSHHQVLAAMAKGISVILCGHSNTERGYLK 245
>sp|Q9PPK2|Y705_CAMJE UPF0135 protein Cj0705 OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=Cj0705 PE=3 SV=1
Length = 241
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 112 LIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHS 171
+++ SD + I IA+C GSGG+L+ AD +++G+ +H L+A +++ L H
Sbjct: 149 ILRVSDCGKKDIKRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHF 208
Query: 172 DSERPFLQ 179
+SER F Q
Sbjct: 209 ESERYFSQ 216
>sp|Q8XIV9|Y2004_CLOPE UPF0135 protein CPE2004 OS=Clostridium perfringens (strain 13 /
Type A) GN=CPE2004 PE=3 SV=1
Length = 262
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 117 DLDEIMINSIAVCAGSGGELLRGKK---ADLYITGEMSHHDVLDATHRGTTVLLLEHSDS 173
DL+E+ I IA+ GSG + K ADL ITG+ ++H V D G +L + H +S
Sbjct: 169 DLNEV-IKKIAIVNGSGQDFFGDAKKLGADLIITGDTTYHFVSDYKEMGLNILDIGHFNS 227
Query: 174 ERPFL 178
E P L
Sbjct: 228 EWPVL 232
>sp|Q5XCH0|Y758_STRP6 UPF0135 protein M6_Spy0758 OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=M6_Spy0758 PE=3
SV=2
Length = 262
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 122 MINSIAVCAGSGGELLRG---KKADLYITGEMSHH 153
+I+ IA+C GSGGE + K AD+YITG++ +H
Sbjct: 171 LISKIAICGGSGGEFYQDAVQKGADVYITGDIYYH 205
>sp|P67276|Y988_STRP8 UPF0135 protein spyM18_0988 OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=spyM18_0988 PE=3 SV=1
Length = 262
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 122 MINSIAVCAGSGGELLRG---KKADLYITGEMSHH 153
+I+ IA+C GSGGE + K AD+YITG++ +H
Sbjct: 171 LISKIAICGGSGGEFYQDAVQKGADVYITGDIYYH 205
>sp|P67274|Y931_STRP1 UPF0135 protein SPy_0931/M5005_Spy0732 OS=Streptococcus pyogenes
serotype M1 GN=SPy_0931 PE=3 SV=1
Length = 262
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 122 MINSIAVCAGSGGELLRG---KKADLYITGEMSHH 153
+I+ IA+C GSGGE + K AD+YITG++ +H
Sbjct: 171 LISKIAICGGSGGEFYQDAVQKGADVYITGDIYYH 205
>sp|P0DG85|Y644_STRPQ UPF0135 protein SPs1208 OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=SPs1208 PE=3 SV=1
Length = 262
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 122 MINSIAVCAGSGGELLRG---KKADLYITGEMSHH 153
+I+ IA+C GSGGE + K AD+YITG++ +H
Sbjct: 171 LISKIAICGGSGGEFYQDAVQKGADVYITGDIYYH 205
>sp|P0DG84|Y644_STRP3 UPF0135 protein SpyM3_0644 OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=SpyM3_0644 PE=3 SV=1
Length = 262
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 122 MINSIAVCAGSGGELLRG---KKADLYITGEMSHH 153
+I+ IA+C GSGGE + K AD+YITG++ +H
Sbjct: 171 LISKIAICGGSGGEFYQDAVQKGADVYITGDIYYH 205
>sp|Q9CGM3|Y1073_LACLA UPF0135 protein YkiD OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=ykiD PE=3 SV=1
Length = 257
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 123 INSIAVCAGSGGELL---RGKKADLYITGEMSHH 153
I IA+C GSGG+L KKAD+YITG++ +H
Sbjct: 171 IGRIAICGGSGGKLWPKALEKKADIYITGDIYYH 204
>sp|Q5HNY9|Y1125_STAEQ UPF0135 protein SERP1125 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=SERP1125 PE=3 SV=1
Length = 366
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 123 INSIAVCAGSG-GELLRGKK--ADLYITGEMSHHDVLDATHRGTTVLLLEH 170
I +A+ GSG G + + AD+++TG++ HHD LDA + +L + H
Sbjct: 276 IKKVAIIGGSGIGFEYKASQLGADVFVTGDIKHHDALDAKIQNVNLLDINH 326
>sp|Q8CSD9|Y1246_STAES UPF0135 protein SE_1246 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=SE_1246 PE=3 SV=1
Length = 366
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 123 INSIAVCAGSG-GELLRGKK--ADLYITGEMSHHDVLDATHRGTTVLLLEH 170
I +A+ GSG G + + AD+++TG++ HHD LDA + +L + H
Sbjct: 276 IKKVAIIGGSGIGFEYKASQLGADVFVTGDIKHHDALDAKIQNVNLLDINH 326
>sp|Q9ZKP2|Y959_HELPJ UPF0135 protein jhp_0893 OS=Helicobacter pylori (strain J99)
GN=jhp_0893 PE=3 SV=1
Length = 243
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 122 MINSIAVCAGSGGELLRGKKAD-LYITGEMSHHDVLDATHRGTTVLLLEHSDSERPF 177
MI +A GSG + KA ITG++ +HD + A G +++ H SER F
Sbjct: 160 MIKDLAFVCGSGASMFSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGF 216
>sp|Q97PK0|Y1609_STRPN UPF0135 protein SP_1609 OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=SP_1609 PE=1 SV=1
Length = 265
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 123 INSIAVCAGSGGELLR---GKKADLYITGEMSHHDVLDATHRGTTVL 166
I+ +A+C GSG + K AD+YITG++ +H D G L
Sbjct: 175 ISRVAICGGSGQSFYKDALAKGADVYITGDIYYHTAQDMLSDGLLAL 221
>sp|Q9UYT3|Y1424_PYRAB UPF0135 protein PYRAB14240 OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB14240 PE=3 SV=1
Length = 250
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 123 INSIAVCAGSGGELLR--GKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSE 174
I +AV +G+GG + +KADL ITGE+SH D A +V+ H +E
Sbjct: 169 IKRVAVVSGAGGFAIEEASEKADLLITGEISHADYRTAEDLRVSVIAAGHYATE 222
>sp|Q57354|Y105_HAEIN UPF0135 protein HI_0105 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=HI_0105 PE=1 SV=2
Length = 251
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 87 KLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGG---ELLRGKKAD 143
+L GK F I V N + I++ +I I +C G G +L + D
Sbjct: 136 ELKEPMTGKDFAEKIEKVLNRKPLICIENGPH---LIRKIGICTGGGQGYIDLAAEQGCD 192
Query: 144 LYITGEMSHHDVLDATHRGTTVLLLEHSDSER 175
+ITGE+S + A +G H +ER
Sbjct: 193 AFITGEVSEQTIHSAREQGLYFFSAGHHATER 224
>sp|O69481|Y1639_MYCLE UPF0135 protein ML1639 OS=Mycobacterium leprae (strain TN)
GN=ML1639 PE=3 SV=1
Length = 385
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 120 EIMINSIAVCAGSGGELLR-GKKADL--YITGEMSHHDVLDATHRGTTVLLLE--HSDSE 174
+++++ +AVC G+G LL AD+ Y+T ++ HH D R + V L++ H SE
Sbjct: 279 DMLVSRVAVCGGAGDSLLSLAAVADVQAYVTADLRHHPA-DEHRRASNVALIDVAHWASE 337
Query: 175 RPF 177
P+
Sbjct: 338 FPW 340
>sp|P67272|Y1559_STAAM UPF0135 protein SAV1559 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=SAV1559 PE=1 SV=1
Length = 366
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 142 ADLYITGEMSHHDVLDATHRGTTVLLLEH 170
AD+++TG++ HHD LDA G ++ + H
Sbjct: 298 ADVFVTGDIKHHDALDAKIHGVNLIDINH 326
>sp|P67273|Y1388_STAAN UPF0135 protein SA1388 OS=Staphylococcus aureus (strain N315)
GN=SA1388 PE=1 SV=1
Length = 366
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 142 ADLYITGEMSHHDVLDATHRGTTVLLLEH 170
AD+++TG++ HHD LDA G ++ + H
Sbjct: 298 ADVFVTGDIKHHDALDAKIHGVNLIDINH 326
>sp|Q5HFK1|Y1616_STAAC UPF0135 protein SACOL1616 OS=Staphylococcus aureus (strain COL)
GN=SACOL1616 PE=3 SV=1
Length = 366
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 142 ADLYITGEMSHHDVLDATHRGTTVLLLEH 170
AD+++TG++ HHD LDA G ++ + H
Sbjct: 298 ADVFVTGDIKHHDALDAKIHGVNLIDINH 326
>sp|Q8NWB9|Y1511_STAAW UPF0135 protein MW1511 OS=Staphylococcus aureus (strain MW2)
GN=MW1511 PE=3 SV=1
Length = 366
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 142 ADLYITGEMSHHDVLDATHRGTTVLLLEH 170
AD+++TG++ HHD LDA G ++ + H
Sbjct: 298 ADVFVTGDIKHHDALDAKIHGVNLIDINH 326
>sp|Q6G907|Y1497_STAAS UPF0135 protein SAS1497 OS=Staphylococcus aureus (strain MSSA476)
GN=SAS1497 PE=3 SV=1
Length = 366
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 142 ADLYITGEMSHHDVLDATHRGTTVLLLEH 170
AD+++TG++ HHD LDA G ++ + H
Sbjct: 298 ADVFVTGDIKHHDALDAKIHGVNLIDINH 326
>sp|Q6GGE0|Y1636_STAAR UPF0135 protein SAR1636 OS=Staphylococcus aureus (strain MRSA252)
GN=SAR1636 PE=3 SV=1
Length = 366
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 142 ADLYITGEMSHHDVLDATHRGTTVLLLEH 170
AD+++TG++ HHD LDA G ++ + H
Sbjct: 298 ADVFVTGDIKHHDALDAKIHGVNLIDINH 326
>sp|O25613|Y959_HELPY UPF0135 protein HP_0959 OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=HP_0959 PE=3 SV=1
Length = 243
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 123 INSIAVCAGSGGELLRGKKAD-LYITGEMSHHDVLDATHRGTTVLLLEHSDSERPF 177
I +A GSG + KA ITG++ +HD + A G +++ H SER F
Sbjct: 161 IKDLAFVCGSGASMFSSLKAQSCLITGDVKYHDAMIAQSLGISLIDATHYYSERGF 216
>sp|P0A657|Y2255_MYCBO UPF0135 protein Mb2255c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2255c PE=3 SV=1
Length = 379
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 120 EIMINSIAVCAGSGGELLRGKKA---DLYITGEMSHHDVLDATHRGTTVLLLE--HSDSE 174
+++++ +AVC G+G LL A Y+T ++ HH D R + V L++ H SE
Sbjct: 279 DLLVSRVAVCGGAGDSLLATVAAADVQAYVTADLRHHPA-DEHCRASQVALIDVAHWASE 337
Query: 175 RPF 177
P+
Sbjct: 338 FPW 340
>sp|P0A656|Y2230_MYCTU UPF0135 protein Rv2230c/MT2289 OS=Mycobacterium tuberculosis
GN=Rv2230c PE=3 SV=1
Length = 379
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 120 EIMINSIAVCAGSGGELLRGKKA---DLYITGEMSHHDVLDATHRGTTVLLLE--HSDSE 174
+++++ +AVC G+G LL A Y+T ++ HH D R + V L++ H SE
Sbjct: 279 DLLVSRVAVCGGAGDSLLATVAAADVQAYVTADLRHHPA-DEHCRASQVALIDVAHWASE 337
Query: 175 RPF 177
P+
Sbjct: 338 FPW 340
>sp|O58361|Y627_PYRHO UPF0135 protein PH0627 OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0627
PE=3 SV=1
Length = 250
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 123 INSIAVCAGSGGELLR--GKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSE 174
+ IAV +G GG + +KADL ITGE++H D A +V+ H +E
Sbjct: 169 VKRIAVVSGGGGFAIEEASRKADLLITGEITHEDYRVAEDLRVSVIAAGHYATE 222
>sp|Q8YS75|Y3216_NOSS1 UPF0135 protein alr3216 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=alr3216 PE=3 SV=1
Length = 263
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 88 LDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRG---KKADL 144
LD + + + I T + +DL +I I+ +AV GSG + A+
Sbjct: 141 LDPFLNLQELLTVIQTRLAPPDLIFSPTADLQQI-ISRVAVLGGSGAGFISAVAETGAEA 199
Query: 145 YITGEMSHHDVLDATHRGTTVLLLEHSDSERP 176
Y+T + H ++ RG ++ H +ERP
Sbjct: 200 YLTSDCKFHQFQESRDRGLILIDAGHYATERP 231
>sp|Q8RY59|RCD1_ARATH Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana
GN=RCD1 PE=1 SV=1
Length = 589
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 97 FGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGG--ELLRGKKADLYITGEMSHHD 154
+GV IH A + + D+DE + + +C G ELLRG KA + GE +
Sbjct: 360 YGVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQFFSGGEEYDNG 419
Query: 155 VLD 157
V D
Sbjct: 420 VDD 422
>sp|P54472|YQFO_BACSU UPF0135 protein YqfO OS=Bacillus subtilis (strain 168) GN=yqfO PE=3
SV=2
Length = 373
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 64 SRVVTRLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMI 123
V ++ +E+ P L + K F + + + + ++ D+D M+
Sbjct: 227 EEVAYDIYPVEQTPAEKGLGRVGTLKNEMTLKEFALFVKDKLDVNGVRMVGDADS---MV 283
Query: 124 NSIAVCAGSGGELL---RGKKADLYITGEMSHHDVLDATHRGTTVL 166
+AV G G + + + K AD+Y+TG++ H DA G V+
Sbjct: 284 KKVAVLGGDGNKYIHHAKRKGADVYVTGDLYFHVAHDAMMLGLNVV 329
>sp|Q8PTA5|SYFB_METMA Phenylalanine--tRNA ligase beta subunit OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=pheT PE=3 SV=1
Length = 545
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 94 GKHFG-VSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGE 149
G+H VSIH AN + + D+ + E+M+ S V L G++AD+Y+ G+
Sbjct: 453 GQHVAAVSIHPQANFTEVYEVVDAFMREMML-SYEVKESKDPAFLEGRRADVYVNGK 508
>sp|Q9JWG6|Y382_NEIMA UPF0135 protein NMA0382 OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=NMA0382 PE=3 SV=1
Length = 249
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 64 SRVVTRL-FAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIM 122
+++ RL FA EK G +N L I TV V+ K E
Sbjct: 111 AQLADRLGFATEKRFGEQNLLNSGSLKQAKTLGALAAHIETVLQRKPVVIGKP----ERE 166
Query: 123 INSIAVCAGSGGELLR---GKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSER 175
I +A C+G + + DLY+TGE+S A GT + H +ER
Sbjct: 167 IRRVAWCSGGAQGFFQTAIDEGVDLYLTGEISEAQYHLANETGTAFISAGHHATER 222
>sp|Q5WG56|ODO1_BACSK 2-oxoglutarate dehydrogenase E1 component OS=Bacillus clausii
(strain KSM-K16) GN=odhA PE=3 SV=1
Length = 943
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 41 WLSPILSSFSLRFRDDKTARDTVSRVVTRLFAM-----EKIPGS---NPTINKKKLDSYF 92
++SPI+ ++ ++D++++ + TR +++ PG T+N +L+ Y
Sbjct: 325 FVSPIVEGYARAAQEDRSSKGAPKQDTTRAYSILIHGDAAFPGQGVVTETLNLSRLNGY- 383
Query: 93 DGKHFGVSIHTVANTS 108
H G S+H +AN +
Sbjct: 384 ---HVGGSLHIIANNN 396
>sp|Q58337|Y927_METJA UPF0135 protein MJ0927 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0927 PE=3 SV=2
Length = 244
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 16/54 (29%)
Query: 139 GKKADLYITGEMSHHD----------VLDATHRGTTVLLLEHSDSERPFLQFFS 182
+KAD+Y++G+++HH V+DATH T V L + F +F S
Sbjct: 185 AEKADVYLSGDLTHHSKILAEELGLVVVDATHYSTEVFGL------KKFKEFLS 232
>sp|Q39S28|DNLJ_GEOMG DNA ligase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774
/ DSM 7210) GN=ligA PE=3 SV=1
Length = 671
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 26/140 (18%)
Query: 42 LSPILSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSI 101
+ P ++ F ++ R+T+ R+V G PT+ +KK+ F GK F
Sbjct: 554 IGPQVAQSITTFFHNEGNRETIRRMVE--------AGVEPTVEEKKVGGKFTGKTF---- 601
Query: 102 HTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHR 161
T T + S+ +++ + AGS KK D + G+ + + A
Sbjct: 602 ---VFTGTLIRFSRSEAQKMVESEGGHAAGS-----VSKKTDYVVAGDEAGSKLDKARQL 653
Query: 162 GTTVLLLEHSDSERPFLQFF 181
G TVL +E FLQ
Sbjct: 654 GVTVL------AEDEFLQML 667
>sp|Q97JI0|Y1303_CLOAB UPF0135 protein CA_C1303 OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=CA_C1303 PE=3 SV=1
Length = 268
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 123 INSIAVCAGSGGELL---RGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERP 176
I+S AV GSG + R + D ITG+ S+H V D V+ H +E P
Sbjct: 177 IHSFAVINGSGQDFFEEARKRGVDCIITGDTSYHYVSDYNEMNIAVIDAGHFGTEWP 233
>sp|P58176|SYL1_SULSO Leucine--tRNA ligase 1 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=leuS1 PE=3 SV=1
Length = 934
Score = 30.4 bits (67), Expect = 7.6, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 95 KHFGVSIHTVANTSTHVLIKDSDLDEIMINSIA 127
K FGV +A TST L++D D +E ++N IA
Sbjct: 632 KEFGVDPVRIALTSTSDLLQDLDFNENLVNPIA 664
>sp|Q9CP72|Y183_PASMU UPF0135 protein PM0183 OS=Pasteurella multocida (strain Pm70)
GN=PM0183 PE=3 SV=1
Length = 251
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 122 MINSIAVCAGSGG---ELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSER 175
+I ++ +C G G +L + D +I+GE+S + A +G H +ER
Sbjct: 168 LIRTVGICTGGGQSYIDLAANQGVDAFISGEVSEQTIHSAREQGIHFFAAGHHATER 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,722,796
Number of Sequences: 539616
Number of extensions: 2691504
Number of successful extensions: 5458
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 5431
Number of HSP's gapped (non-prelim): 47
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)