Query psy18092
Match_columns 183
No_of_seqs 161 out of 1093
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 22:23:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01784 NIF3: NIF3 (NGG1p int 100.0 1.6E-36 3.6E-41 256.3 3.9 152 17-182 54-232 (241)
2 TIGR00486 YbgI_SA1388 dinuclea 100.0 1.6E-35 3.5E-40 252.0 9.3 152 17-182 58-229 (249)
3 PRK10799 metal-binding protein 100.0 1.6E-34 3.4E-39 245.7 8.9 152 17-182 57-227 (247)
4 COG0327 Uncharacterized conser 100.0 8E-33 1.7E-37 237.3 8.5 152 17-182 58-230 (250)
5 KOG4131|consensus 99.9 9.5E-26 2E-30 195.1 7.4 155 18-182 68-247 (272)
6 PRK10799 metal-binding protein 71.4 14 0.0003 31.7 6.3 48 121-168 33-96 (247)
7 PF02579 Nitro_FeMo-Co: Dinitr 66.3 12 0.00026 26.2 4.1 33 136-168 48-80 (94)
8 TIGR00486 YbgI_SA1388 dinuclea 65.6 17 0.00037 31.2 5.7 51 118-168 31-97 (249)
9 PF01784 NIF3: NIF3 (NGG1p int 65.5 17 0.00036 31.0 5.5 52 117-168 26-94 (241)
10 cd00851 MTH1175 This uncharact 52.8 28 0.0006 24.7 4.1 35 136-170 58-92 (103)
11 COG1433 Uncharacterized conser 50.2 34 0.00074 27.1 4.6 36 135-170 59-94 (121)
12 cd00562 NifX_NifB This CD repr 49.6 34 0.00074 24.1 4.2 35 136-170 56-90 (102)
13 PF00670 AdoHcyase_NAD: S-aden 44.1 22 0.00048 29.5 2.7 35 141-175 78-116 (162)
14 PF06189 5-nucleotidase: 5'-nu 42.9 38 0.00083 30.4 4.2 42 121-164 62-104 (264)
15 KOG3738|consensus 39.3 21 0.00044 34.6 2.1 99 22-134 350-465 (559)
16 PRK09932 glycerate kinase II; 38.4 38 0.00083 31.7 3.6 31 141-171 284-326 (381)
17 PRK10342 glycerate kinase I; P 37.6 39 0.00085 31.6 3.6 30 141-170 284-325 (381)
18 KOG4510|consensus 35.4 26 0.00055 32.4 2.0 23 17-39 163-185 (346)
19 TIGR00045 glycerate kinase. Th 34.2 51 0.0011 30.7 3.8 31 141-171 283-325 (375)
20 PF11788 MRP-L46: 39S mitochon 34.1 34 0.00073 25.8 2.2 24 15-38 3-26 (111)
21 PRK03892 ribonuclease P protei 33.1 41 0.0009 29.4 2.8 89 73-165 33-133 (216)
22 cd00853 NifX NifX belongs to a 32.6 1.2E+02 0.0027 22.0 5.0 30 140-169 60-89 (102)
23 KOG4510|consensus 30.6 26 0.00056 32.3 1.2 19 17-35 81-99 (346)
24 COG0327 Uncharacterized conser 30.0 1.9E+02 0.0042 25.1 6.5 50 119-168 32-98 (250)
25 TIGR01364 serC_1 phosphoserine 29.8 52 0.0011 29.4 3.0 44 124-168 56-108 (349)
26 COG1756 Mra1 Uncharacterized c 29.0 53 0.0011 28.9 2.8 49 46-95 83-146 (223)
27 cd00852 NifB NifB belongs to a 28.6 83 0.0018 23.0 3.5 31 140-170 64-94 (106)
28 KOG0725|consensus 25.9 1.9E+02 0.0041 25.2 5.7 32 123-154 7-45 (270)
29 TIGR03599 YloV DAK2 domain fus 25.3 1.2E+02 0.0026 29.4 4.8 49 121-169 313-368 (530)
30 PRK09140 2-dehydro-3-deoxy-6-p 24.8 1.2E+02 0.0025 25.6 4.1 47 128-174 63-116 (206)
31 PF02595 Gly_kinase: Glycerate 24.7 24 0.00053 32.8 -0.0 31 141-171 284-326 (377)
32 cd01783 DAGK_delta_RA Ubiquiti 24.6 1.2E+02 0.0026 23.4 3.7 39 40-82 10-48 (97)
33 PRK05355 3-phosphoserine/phosp 24.0 84 0.0018 28.1 3.2 41 124-164 67-116 (360)
34 TIGR02663 nifX nitrogen fixati 23.4 1.6E+02 0.0034 22.3 4.3 31 140-170 62-92 (119)
35 PF11684 DUF3280: Protein of u 23.1 41 0.00088 27.2 1.0 42 126-168 65-106 (140)
36 COG4221 Short-chain alcohol de 23.0 78 0.0017 28.1 2.8 38 125-162 7-51 (246)
37 PRK06483 dihydromonapterin red 22.9 2.4E+02 0.0053 22.5 5.5 27 125-151 3-36 (236)
38 PF02639 DUF188: Uncharacteriz 22.6 3.4E+02 0.0074 21.5 6.1 73 94-174 6-83 (130)
39 cd00311 TIM Triosephosphate is 22.1 61 0.0013 28.1 2.0 14 135-148 78-91 (242)
40 PRK00042 tpiA triosephosphate 21.9 59 0.0013 28.4 1.8 41 135-175 80-133 (250)
41 PF13470 PIN_3: PIN domain 21.6 59 0.0013 23.7 1.5 11 141-151 109-119 (119)
42 TIGR00419 tim triosephosphate 21.3 65 0.0014 27.4 1.9 23 146-171 68-90 (205)
43 smart00800 uDENN Domain always 21.0 1.1E+02 0.0024 21.9 2.8 33 24-58 47-79 (89)
44 PTZ00333 triosephosphate isome 20.8 67 0.0015 28.2 1.9 14 135-148 83-96 (255)
45 cd08163 MPP_Cdc1 Saccharomyces 20.5 1.5E+02 0.0033 25.5 4.1 87 18-107 165-252 (257)
46 PRK14567 triosephosphate isome 20.1 72 0.0016 28.2 2.0 14 135-148 79-92 (253)
No 1
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=100.00 E-value=1.6e-36 Score=256.31 Aligned_cols=152 Identities=24% Similarity=0.363 Sum_probs=122.0
Q ss_pred EEEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhcc--cCCCC-------
Q psy18092 17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAME--KIPGS------- 79 (183)
Q Consensus 17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~~--k~~~~------- 79 (183)
+=|||||||++|++.++...++. ++++ |++||.|||+|.... ++|+.+.++|+-. +....
T Consensus 54 ~dlIItHHP~~f~~~~~~~~~~~--~~~~~~~li~~~I~vy~~Ht~lD~~~~-G~n~~La~~Lgl~~~~~~~~~~~~~~~ 130 (241)
T PF01784_consen 54 ADLIITHHPLFFKPLKSLTGDDY--KGKIIEKLIKNGISVYSAHTNLDAAPG-GVNDYLAKKLGLENIKPLDPSKSGEGY 130 (241)
T ss_dssp -SEEEESS-SSSSTSSHCHCHSH--HHHHHHHHHHTT-EEEEESHHHHHSTT-SHHHHHHHHHTEEEEEEEEEEEEEEEE
T ss_pred CCEEEEcCchhhcCCccccccch--hhHHHHHHHHCCCEEEEecccccccCc-CHHHHHHHHhCCCCccccccccccccc
Confidence 45899999999999999888755 5554 999999999999995 9999999999722 22211
Q ss_pred ----Ccccc-ccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhC---CCcEEEecC
Q psy18092 80 ----NPTIN-KKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGK---KADLYITGE 149 (183)
Q Consensus 80 ----~~~~~-~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGE 149 (183)
--..+ ..+++||++ |+.|+.+.+|+.. +.+++|+|||+|+|||+++++++ |||+|||||
T Consensus 131 g~g~i~~l~~~~s~~el~~~vk~~l~~~~vr~~g-----------~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd 199 (241)
T PF01784_consen 131 GLGRIGELPEPMSLEELAERVKEKLGLPGVRVVG-----------DPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITGD 199 (241)
T ss_dssp ECEEEEEEEEEEEHHHHHHHHHHHTTSS-EEEES-----------CTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEESS
T ss_pred eeeeEeecCCCCCHHHHHHHHHHHcCCCcEEecC-----------CCCCcccEEEEEcccCccHHHHHHhCCCeEEEEcc
Confidence 11222 368888887 8899999988874 47889999999999999998766 999999999
Q ss_pred CChhHHHHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092 150 MSHHDVLDATHRGTTVLLLEHSDSERPFLQFFS 182 (183)
Q Consensus 150 vkhH~~l~A~e~Gi~lId~GHyaTE~~~v~~L~ 182 (183)
++||++++|.+.|+++|++|||+||++|++.|+
T Consensus 200 ~~~h~~~~a~~~g~~lI~~gH~~sE~~~~~~l~ 232 (241)
T PF01784_consen 200 IKYHDAQDAKENGINLIDAGHYASERPGMEALA 232 (241)
T ss_dssp --HHHHHHHHHCTSEEEE--HHHHGGHHHHHHH
T ss_pred CcHHHHHHHHHCCCEEEEcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 2
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=100.00 E-value=1.6e-35 Score=251.96 Aligned_cols=152 Identities=21% Similarity=0.204 Sum_probs=124.4
Q ss_pred EEEeeeCCccccCCCCcceecCCCCCCCe-------eEEEEEeecCchhhhhhHHHHHHHHHhcccCCCCCc-------c
Q psy18092 17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI-------LSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNP-------T 82 (183)
Q Consensus 17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~-------i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~~~~~~-------~ 82 (183)
+=|||||||++|+|.+....... .+++ |++||.|||+|..- .++|+.+-+.|+-.+...... +
T Consensus 58 ~dlIitHHP~~f~~~~~~~~~~~--~~~~~~li~~~I~vy~~Ht~lD~~~-~G~n~~La~~Lgl~~~~~~~~~g~G~vg~ 134 (249)
T TIGR00486 58 ADLIITHHPLIWKPLKRLIRGIK--PGRLKILLQNDISLYSAHTNLDAHD-GGNNDALARALGLENPKEFEDYGLGRVGE 134 (249)
T ss_pred CCEEEEcCccccCCcccccCCCH--HHHHHHHHHCCCeEEEeecchhcCC-CCHHHHHHHHcCCCccccccCCCceeEEE
Confidence 34899999999999887644333 2223 99999999999998 499999999998443211111 1
Q ss_pred c-cccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhC---CCcEEEecCCChhHHH
Q psy18092 83 I-NKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGK---KADLYITGEMSHHDVL 156 (183)
Q Consensus 83 ~-~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEvkhH~~l 156 (183)
. ...+++||++ |++|+++.+|++. +.+++|+|||+|+|||++++.+| |||+|||||++||+++
T Consensus 135 l~~~~~~~~~~~~vk~~l~~~~vr~~~-----------~~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd~k~h~~~ 203 (249)
T TIGR00486 135 FKAPIESLEEVLEIKKVLNVKPLLVVK-----------NGPEYVKKVAVVSGSGLSFIMKALREGVDAYITGDLSHHTAH 203 (249)
T ss_pred CCCCCCHHHHHHHHHHHhCCCCEEEeC-----------CCCCceeEEEEEcCchHHHHHHHHHcCCCEEEecCCchHHHH
Confidence 1 2457778877 8889988888875 35678999999999999988776 8999999999999999
Q ss_pred HHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092 157 DATHRGTTVLLLEHSDSERPFLQFFS 182 (183)
Q Consensus 157 ~A~e~Gi~lId~GHyaTE~~~v~~L~ 182 (183)
+|+++|+++|++|||+||+++++.|+
T Consensus 204 ~A~~~gi~li~~gH~~sE~~~~~~la 229 (249)
T TIGR00486 204 LARELGLNVIDAGHYATERGGLRKLM 229 (249)
T ss_pred HHHHCCCEEEEcCcHHHHHHHHHHHH
Confidence 99999999999999999999999886
No 3
>PRK10799 metal-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=245.66 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=120.5
Q ss_pred EEEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhcccCCCCCccc-----
Q psy18092 17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTI----- 83 (183)
Q Consensus 17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~----- 83 (183)
+=|||||||++|+|.+..... . ++++ |++||.|||+|....++.|+.+.++|+..+.....+..
T Consensus 57 ~dlIitHHP~~~~~~~~~~~~-~--~~~~~~~li~~~i~vy~~Htn~D~~~~~G~n~~la~~Lgl~~~~~~~~~~~~g~l 133 (247)
T PRK10799 57 ADAVIVHHGYFWKGESPVIRG-M--KRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGEL 133 (247)
T ss_pred CCEEEECCchhccCCCccccc-h--HHHHHHHHHHCCCeEEEEecchhhCCCCCHHHHHHHHcCCCcccCcCCceeeEEC
Confidence 348999999999998775322 2 3333 99999999999988569999999999844331111111
Q ss_pred -cccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhC---CCcEEEecCCChhHHHH
Q psy18092 84 -NKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGK---KADLYITGEMSHHDVLD 157 (183)
Q Consensus 84 -~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEvkhH~~l~ 157 (183)
...+++||+. |+.|+.+...+.+ ..+++|+|||+|+|||++++.+| |||+|||||++||++++
T Consensus 134 ~~~~s~~~l~~~vk~~l~~~~~~~~~-----------~~~~~i~rVAi~~GsG~~~i~~a~~~gaD~~ITGd~k~h~~~~ 202 (247)
T PRK10799 134 TMPVPGLELASWIEARLGRKPLWCGD-----------TGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHS 202 (247)
T ss_pred CCCcCHHHHHHHHHHHhCCCeEEECC-----------CCCCcccEEEEECCchHHHHHHHHHcCCCEEEECCcchHHHHH
Confidence 1456778877 8888887532222 23468999999999999988776 89999999999999999
Q ss_pred HHHcCCeEEEeCCccchHHHHhhcc
Q psy18092 158 ATHRGTTVLLLEHSDSERPFLQFFS 182 (183)
Q Consensus 158 A~e~Gi~lId~GHyaTE~~~v~~L~ 182 (183)
|.+.|+++|++|||+||+++++.|+
T Consensus 203 A~~~gl~li~~GH~~sE~~~~~~la 227 (247)
T PRK10799 203 AREQGLHFYAAGHHATERGGIRALS 227 (247)
T ss_pred HHHCCCeEEEcCchHHHHHHHHHHH
Confidence 9999999999999999999999875
No 4
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=99.98 E-value=8e-33 Score=237.27 Aligned_cols=152 Identities=23% Similarity=0.273 Sum_probs=125.6
Q ss_pred EEEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHh--cccCCC------CC
Q psy18092 17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFA--MEKIPG------SN 80 (183)
Q Consensus 17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~--~~k~~~------~~ 80 (183)
+-|||||||+||.+.++...... +..+ |++||.|||+|... ++.|+.+.+.+. ..+.+. .-
T Consensus 58 ad~ii~HHplif~~~~~~~~~~~--~~~~i~~li~~~I~ly~~HtnlD~~~-~g~N~a~~~~l~~~~~~~~~~~~~g~~g 134 (250)
T COG0327 58 ADLLIVHHPLIFWPVKSLAIDGP--KGKRIKALIQNDINLYAAHTNLDAHP-EGGNDALAAALLGAEELPPFGEGLGRVG 134 (250)
T ss_pred CCEEEEcCchhcCCCccccccch--HHHHHHHHHhCCCeEEEccccccccc-ccccHHHHHHhcCcccccccccccceEE
Confidence 34899999999999998664432 4444 99999999999998 888999887777 333222 11
Q ss_pred ccccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhC---CCcEEEecCCChhHH
Q psy18092 81 PTINKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGK---KADLYITGEMSHHDV 155 (183)
Q Consensus 81 ~~~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEvkhH~~ 155 (183)
...+..++++|.+ ++.|+.+.++++. +.++.|+|||+|+|||.+++.+| |+|+|||||++||++
T Consensus 135 ~~~~~~~l~~l~~~i~~~l~~~~~~~~~-----------~~~~~i~rvAv~~G~g~~~~~~a~~~gvD~~iTGd~~~~~~ 203 (250)
T COG0327 135 ELKEPTTLEELAERIKAKLGRPPLRVVK-----------DGSEEIKRVAVCSGSGQGFLSEAAAEGVDAYITGDLSHHTA 203 (250)
T ss_pred EeCCCCCHHHHHHHHHHHcCCCCEEEcc-----------CccccCceEEEEeCCChHHHHHHHHcCCCEEEECCCcHHHH
Confidence 2333568888877 8888888888776 46778999999999999998875 999999999999999
Q ss_pred HHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092 156 LDATHRGTTVLLLEHSDSERPFLQFFS 182 (183)
Q Consensus 156 l~A~e~Gi~lId~GHyaTE~~~v~~L~ 182 (183)
++|+|+|+++|++|||+||++|++.|+
T Consensus 204 ~~a~e~gi~~i~~gH~~tE~~g~~~l~ 230 (250)
T COG0327 204 HDARELGLSVIDAGHYATERPGLKALA 230 (250)
T ss_pred HHHHHCCCeEEecCchHHHHHHHHHHH
Confidence 999999999999999999999999775
No 5
>KOG4131|consensus
Probab=99.92 E-value=9.5e-26 Score=195.10 Aligned_cols=155 Identities=32% Similarity=0.388 Sum_probs=122.0
Q ss_pred EEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhcccCCCCCccc------
Q psy18092 18 CLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTI------ 83 (183)
Q Consensus 18 ~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~------ 83 (183)
-.|+.-||+||+|.+++..+ -|+.++ |+|||-||-+|.-. +++||.+-+.++.--+.-.+.+.
T Consensus 68 e~IvAYHP~IFr~~krIt~~--~~~e~~vi~~~~ngiavySPHtA~Daa~-~gVNdwls~gIN~~~~~p~~~t~~gp~~~ 144 (272)
T KOG4131|consen 68 ESIVAYHPPIFRPLKRITKS--YPQERKVIKAIANGIAVYSPHTAVDAAG-GGVNDWLSKGINANLSRPNDPTKNGPMEE 144 (272)
T ss_pred ceeEeecCccccchhhhccc--chHHHHHHHHHhcCceeecchhhhcccc-cchhHHHHHhhhhhhcCCccccccCCCcc
Confidence 46889999999999999988 366666 99999999999966 89999998888821121122211
Q ss_pred c-----------cccccccccccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhCCCcEEEecCCCh
Q psy18092 84 N-----------KKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSH 152 (183)
Q Consensus 84 ~-----------~~~L~efi~k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~AgaDvfITGEvkh 152 (183)
. ..++-|++.+-+=+++.+||.- .+...+...|++||+|+|||++++++..||+|+||||+|
T Consensus 145 ~~G~gr~~e~~~~~~~~~~l~~ik~~l~~v~val-------~~g~~~~~~i~~V~vcAgsg~svlk~~~adly~TGEmSH 217 (272)
T KOG4131|consen 145 TIGYGREEETKINLNVVEILKRIKRGLSSVRVAL-------AVGHTLESQIKKVAVCAGSGSSVLKGVDADLYITGEMSH 217 (272)
T ss_pred cccccceeeccCcccHHHHHHHHHhcCCeEEEee-------ccCCccccceeEEEEeeccCcceeccccccEEEeccccH
Confidence 1 2245555552112667766665 333356778999999999999999999999999999999
Q ss_pred hHHHHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092 153 HDVLDATHRGTTVLLLEHSDSERPFLQFFS 182 (183)
Q Consensus 153 H~~l~A~e~Gi~lId~GHyaTE~~~v~~L~ 182 (183)
|+.++|.++|++||.++|++|||.|+..|+
T Consensus 218 H~vL~~~~~g~sVilc~HSNtERgfL~d~~ 247 (272)
T KOG4131|consen 218 HDVLDAAANGISVILCEHSNTERGFLSDLC 247 (272)
T ss_pred HHHHHHHHcCCeEEEecCCCccchhHHHHH
Confidence 999999999999999999999999998854
No 6
>PRK10799 metal-binding protein; Provisional
Probab=71.43 E-value=14 Score=31.68 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=38.0
Q ss_pred CcccEEEEEeCCchhhhhhC---CCcEEEecC-------------CChhHHHHHHHcCCeEEEe
Q psy18092 121 IMINSIAVCAGSGGELLRGK---KADLYITGE-------------MSHHDVLDATHRGTTVLLL 168 (183)
Q Consensus 121 ~~I~rVAIcsGSG~s~i~~A---gaDvfITGE-------------vkhH~~l~A~e~Gi~lId~ 168 (183)
.+|++|++|.=.....+++| |||++||=. .++.....+.+++++++.+
T Consensus 33 ~~v~~I~~alD~t~~vi~~A~~~~~dlIitHHP~~~~~~~~~~~~~~~~~~~~li~~~i~vy~~ 96 (247)
T PRK10799 33 ETVQKIVTGVTASQALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGW 96 (247)
T ss_pred ccccEEEEEeCCCHHHHHHHHHCCCCEEEECCchhccCCCccccchHHHHHHHHHHCCCeEEEE
Confidence 47999999999999888887 899998733 2233566778899998876
No 7
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=66.31 E-value=12 Score=26.21 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=29.2
Q ss_pred hhhhCCCcEEEecCCChhHHHHHHHcCCeEEEe
Q psy18092 136 LLRGKKADLYITGEMSHHDVLDATHRGTTVLLL 168 (183)
Q Consensus 136 ~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~ 168 (183)
++.+.++|++|+|.+..+......+.|+.++..
T Consensus 48 ~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 48 FLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp HHHHTTESEEEESCSCHHHHHHHHHTTSEEEES
T ss_pred HHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc
Confidence 344569999999999999999999999999986
No 8
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=65.58 E-value=17 Score=31.19 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=38.1
Q ss_pred CCCCcccEEEEEeCCchhhhhhC---CCcEEEec-------------CCChhHHHHHHHcCCeEEEe
Q psy18092 118 LDEIMINSIAVCAGSGGELLRGK---KADLYITG-------------EMSHHDVLDATHRGTTVLLL 168 (183)
Q Consensus 118 ~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITG-------------EvkhH~~l~A~e~Gi~lId~ 168 (183)
+.+++|++|++|-=.-...+++| |||++||= +........+.++|++++.+
T Consensus 31 ~~~~~v~~I~~alD~t~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~~~~li~~~I~vy~~ 97 (249)
T TIGR00486 31 SGNEEVKKVVVAVDASESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGRLKILLQNDISLYSA 97 (249)
T ss_pred CCCcccCEEEEEecCCHHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHHHHHHHHCCCeEEEe
Confidence 46778999999999998888887 89998761 11222256677889988876
No 9
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=65.51 E-value=17 Score=30.99 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=37.0
Q ss_pred CCCCCcccEEEEEeCCchhhhhhC---CCcEEEecCC--------------ChhHHHHHHHcCCeEEEe
Q psy18092 117 DLDEIMINSIAVCAGSGGELLRGK---KADLYITGEM--------------SHHDVLDATHRGTTVLLL 168 (183)
Q Consensus 117 ~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEv--------------khH~~l~A~e~Gi~lId~ 168 (183)
++++++|++|++|-=.....+++| |+|++||=.. +......+.++|+++..+
T Consensus 26 g~~~~~v~~V~~~ld~t~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~ 94 (241)
T PF01784_consen 26 GDPEQEVKKVLVALDATPEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSA 94 (241)
T ss_dssp S-SSSBESEEEEESS-SHHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEE
T ss_pred CcCccccCEEEEEEeCCHHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEe
Confidence 356789999999999999888887 8999987332 333455677889998876
No 10
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=52.83 E-value=28 Score=24.73 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=29.4
Q ss_pred hhhhCCCcEEEecCCChhHHHHHHHcCCeEEEeCC
Q psy18092 136 LLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEH 170 (183)
Q Consensus 136 ~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~GH 170 (183)
++.+.++|++|+|.+..+......+.|+.++...-
T Consensus 58 ~l~~~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 58 FLADEGVDVVIVGGIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHcCCCEEEeCCCCcCHHHHHHHCCCEEEEcCC
Confidence 34455999999999999999988899999997643
No 11
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=50.24 E-value=34 Score=27.08 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=30.4
Q ss_pred hhhhhCCCcEEEecCCChhHHHHHHHcCCeEEEeCC
Q psy18092 135 ELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEH 170 (183)
Q Consensus 135 s~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~GH 170 (183)
.++.+.|+|++|++.+..-.+....+.|+-++-+.=
T Consensus 59 ~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 59 ELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 456666999999999999999999999998887543
No 12
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=49.60 E-value=34 Score=24.13 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=29.5
Q ss_pred hhhhCCCcEEEecCCChhHHHHHHHcCCeEEEeCC
Q psy18092 136 LLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEH 170 (183)
Q Consensus 136 ~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~GH 170 (183)
++...++|++|+|.+.-+......+.|+.++....
T Consensus 56 ~l~~~~v~~vi~~~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 56 LLALEGCDAVLVGGIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHCCCcEEEEcccCccHHHHHHHcCCEEEEcCC
Confidence 34455999999999999999888999999987654
No 13
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=44.05 E-value=22 Score=29.48 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=23.5
Q ss_pred CCcEEE--ecCCC--hhHHHHHHHcCCeEEEeCCccchH
Q psy18092 141 KADLYI--TGEMS--HHDVLDATHRGTTVLLLEHSDSER 175 (183)
Q Consensus 141 gaDvfI--TGEvk--hH~~l~A~e~Gi~lId~GHyaTE~ 175 (183)
.+|+|| ||... --+-+.....|.-|.++||+..|-
T Consensus 78 ~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~Ei 116 (162)
T PF00670_consen 78 DADIFVTATGNKDVITGEHFRQMKDGAILANAGHFDVEI 116 (162)
T ss_dssp T-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTSB
T ss_pred hCCEEEECCCCccccCHHHHHHhcCCeEEeccCcCceeE
Confidence 689998 47543 233455667899999999998763
No 14
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=42.94 E-value=38 Score=30.40 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=34.5
Q ss_pred CcccEEEEEeCCch-hhhhhCCCcEEEecCCChhHHHHHHHcCCe
Q psy18092 121 IMINSIAVCAGSGG-ELLRGKKADLYITGEMSHHDVLDATHRGTT 164 (183)
Q Consensus 121 ~~I~rVAIcsGSG~-s~i~~AgaDvfITGEvkhH~~l~A~e~Gi~ 164 (183)
-.|.|.|.++|.-- .+++.-++|+|+|.| ..++++|.+.|+.
T Consensus 62 L~ItR~~ft~G~~~~~Yl~af~v~LFLSan--~~DV~~Ai~~G~~ 104 (264)
T PF06189_consen 62 LDITRAAFTGGESPYPYLKAFNVDLFLSAN--EDDVQEAIDAGIP 104 (264)
T ss_pred CcceeeeecCCCCHHHHHHHhCCceEeeCC--HHHHHHHHHcCCC
Confidence 35999999998875 566655999999987 4689999999984
No 15
>KOG3738|consensus
Probab=39.26 E-value=21 Score=34.63 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=58.6
Q ss_pred eCCccccCCCCcceecCCCCCCCe--------------eEEEEEeecCchhhhhhHHHHHHHHHh--cccCCCCCcccc-
Q psy18092 22 TRPRVCFPPGTDNVRSRNGWLSPI--------------LSSFSLRFRDDKTARDTVSRVVTRLFA--MEKIPGSNPTIN- 84 (183)
Q Consensus 22 t~~~~~f~~~~~~~~~~~~~~~~~--------------i~~~~~~~~~d~~~~~~~~~~~~~~~~--~~k~~~~~~~~~- 84 (183)
-+|||-||++..++-..| -++. ..-+|..-+++... +.|. +.+.+. +||-+-.|--+-
T Consensus 350 krHpy~FP~gs~~ty~~N--Tkr~AEvWmDEYK~~yyaarPsAr~vpfg~i~-~rL~--~Rk~l~CksFkWYLenVyPeL 424 (559)
T KOG3738|consen 350 KRHPYTFPGGSGNTYIKN--TKRAAEVWMDEYKNYYYAARPSARRVPFGNIY-DRLE--LRKKLRCKSFKWYLENVYPEL 424 (559)
T ss_pred ccCCCcCCCCCCcchhhc--chHHHHHHHHHHHHHHHhcCchhhcCCCccHH-HHHH--HHhhcCCcchhhhhhhcCcce
Confidence 589999999999988887 4444 44467777887665 5444 455555 777777664222
Q ss_pred cccccccccccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCch
Q psy18092 85 KKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGG 134 (183)
Q Consensus 85 ~~~L~efi~k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~ 134 (183)
....+|.+.+..+ +..++ |+-.-+...++.-.++.|-|+|+
T Consensus 425 ~ip~~~~~~~g~l-----rqg~~----Cl~s~~~~~~~~~gl~~C~~s~~ 465 (559)
T KOG3738|consen 425 RIPFKELIATGTL-----RQGDN----CLDSQGQNSQEALGLASCHGSGG 465 (559)
T ss_pred eccccccccccch-----hccch----hhhhhhcccccCcceeecccCCC
Confidence 3334444432222 22221 22111223344667899999976
No 16
>PRK09932 glycerate kinase II; Provisional
Probab=38.36 E-value=38 Score=31.68 Aligned_cols=31 Identities=26% Similarity=0.045 Sum_probs=24.2
Q ss_pred CCcEEEecCCChh-----------HHHHHHHcCCeEEE-eCCc
Q psy18092 141 KADLYITGEMSHH-----------DVLDATHRGTTVLL-LEHS 171 (183)
Q Consensus 141 gaDvfITGEvkhH-----------~~l~A~e~Gi~lId-~GHy 171 (183)
+||++||||-+.. .+..|...++.+|. +|..
T Consensus 284 ~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~ 326 (381)
T PRK09932 284 GAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVL 326 (381)
T ss_pred cCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEeccc
Confidence 5999999998655 47778888887776 5664
No 17
>PRK10342 glycerate kinase I; Provisional
Probab=37.62 E-value=39 Score=31.59 Aligned_cols=30 Identities=23% Similarity=0.070 Sum_probs=23.6
Q ss_pred CCcEEEecCCChh-----------HHHHHHHcCCeEEE-eCC
Q psy18092 141 KADLYITGEMSHH-----------DVLDATHRGTTVLL-LEH 170 (183)
Q Consensus 141 gaDvfITGEvkhH-----------~~l~A~e~Gi~lId-~GH 170 (183)
+||++||||-+.. .+..|+..|+.+|. +|-
T Consensus 284 ~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~ 325 (381)
T PRK10342 284 DCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS 325 (381)
T ss_pred cCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEecc
Confidence 6999999998755 36778888887776 454
No 18
>KOG4510|consensus
Probab=35.38 E-value=26 Score=32.35 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=18.7
Q ss_pred EEEeeeCCccccCCCCcceecCC
Q psy18092 17 VCLLSTRPRVCFPPGTDNVRSRN 39 (183)
Q Consensus 17 ~~~i~t~~~~~f~~~~~~~~~~~ 39 (183)
=.++|+||||.|+.-+.-..++.
T Consensus 163 GVVLIvRPpFlFG~~t~g~~~s~ 185 (346)
T KOG4510|consen 163 GVVLIVRPPFLFGDTTEGEDSSQ 185 (346)
T ss_pred eEEEEecCCcccCCCcccccccc
Confidence 35789999999999887766665
No 19
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=34.16 E-value=51 Score=30.73 Aligned_cols=31 Identities=32% Similarity=0.276 Sum_probs=24.0
Q ss_pred CCcEEEecCCChh-----------HHHHHHHcCCeEEE-eCCc
Q psy18092 141 KADLYITGEMSHH-----------DVLDATHRGTTVLL-LEHS 171 (183)
Q Consensus 141 gaDvfITGEvkhH-----------~~l~A~e~Gi~lId-~GHy 171 (183)
+||++||||-+.. .+..|...|+.+|. +|.-
T Consensus 283 ~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v 325 (375)
T TIGR00045 283 DADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSL 325 (375)
T ss_pred CCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEeccc
Confidence 5999999998765 36778888887776 5654
No 20
>PF11788 MRP-L46: 39S mitochondrial ribosomal protein L46 ; InterPro: IPR021757 This is the L46 subunit of the mammalian mitochondrial ribosome, conserved from plants and fungi.
Probab=34.05 E-value=34 Score=25.84 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=20.2
Q ss_pred eeEEEeeeCCccccCCCCcceecC
Q psy18092 15 IRVCLLSTRPRVCFPPGTDNVRSR 38 (183)
Q Consensus 15 ~~~~~i~t~~~~~f~~~~~~~~~~ 38 (183)
|.+.+|++|+|++-++++.....=
T Consensus 3 I~aav~L~R~Pvit~~~t~~E~~y 26 (111)
T PF11788_consen 3 IFAAVCLSRPPVITPEPTPFEKAY 26 (111)
T ss_pred eeEEEEEecCCccCCCCCHHHHHH
Confidence 577899999999999998776654
No 21
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=33.06 E-value=41 Score=29.41 Aligned_cols=89 Identities=15% Similarity=0.114 Sum_probs=53.2
Q ss_pred cccCCCCCccccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCch---hhhhhCCCcEEEe
Q psy18092 73 MEKIPGSNPTINKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGG---ELLRGKKADLYIT 147 (183)
Q Consensus 73 ~~k~~~~~~~~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~---s~i~~AgaDvfIT 147 (183)
+.|++-.+ .+++..++|=++ ++.+++..+.+.+..+.-.-+..+.- +..-|+|-+|.-. ..+++ ++|++.+
T Consensus 33 ~~~~~~~~-~~~~~~~~~d~~~l~~~yg~~gv~i~~~np~~l~~~V~k~--~~~vv~V~GGd~~vNR~AvE~-~VDVL~~ 108 (216)
T PRK03892 33 TKKLVLED-SPDFGSLKEELKELKKEYGKVAILLVTPKPSLIREVKQRF--LNYLIYVQGGDLRVNRYAIER-GVDAIIS 108 (216)
T ss_pred EEEEeccC-CCChhhhHHHHHHHHHhcCcceEEEecCCHHHHHHHHHhc--cceEEEEECCcHHHHHHHHhc-ccceeec
Confidence 45554433 356666666666 77788888888885333221111111 2334555555433 12333 8999865
Q ss_pred c-------CCChhHHHHHHHcCCeE
Q psy18092 148 G-------EMSHHDVLDATHRGTTV 165 (183)
Q Consensus 148 G-------EvkhH~~l~A~e~Gi~l 165 (183)
- ++.|-.+..|.++|+.+
T Consensus 109 P~~~Rkd~g~dHVLAKlAa~n~VAI 133 (216)
T PRK03892 109 PWVGRKDPGIDHVLARMAAKRGVAI 133 (216)
T ss_pred ccccCcCCCccHHHHHHHHHcCeEE
Confidence 3 57888899999999865
No 22
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=32.58 E-value=1.2e+02 Score=21.96 Aligned_cols=30 Identities=3% Similarity=0.085 Sum_probs=26.9
Q ss_pred CCCcEEEecCCChhHHHHHHHcCCeEEEeC
Q psy18092 140 KKADLYITGEMSHHDVLDATHRGTTVLLLE 169 (183)
Q Consensus 140 AgaDvfITGEvkhH~~l~A~e~Gi~lId~G 169 (183)
.+||++|||.+.........+.|+.++...
T Consensus 60 ~~~~vvi~~~iG~~a~~~L~~~GI~v~~~~ 89 (102)
T cd00853 60 EDCAILYCAAIGGPAAARLVRAGIHPIKVP 89 (102)
T ss_pred CCCcEEEEhhcChhHHHHHHHcCCEEEEcC
Confidence 399999999999999988999999998654
No 23
>KOG4510|consensus
Probab=30.63 E-value=26 Score=32.35 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=16.5
Q ss_pred EEEeeeCCccccCCCCcce
Q psy18092 17 VCLLSTRPRVCFPPGTDNV 35 (183)
Q Consensus 17 ~~~i~t~~~~~f~~~~~~~ 35 (183)
-|+|+++||+++||+++.-
T Consensus 81 pcliy~~~~v~gp~g~R~~ 99 (346)
T KOG4510|consen 81 PCLIYYMQPVIGPEGKRKW 99 (346)
T ss_pred eEEEEEeeeeecCCCcEEE
Confidence 5999999999999988753
No 24
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=30.02 E-value=1.9e+02 Score=25.07 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=37.3
Q ss_pred CCCcccEEEEEeCCchhhhhhC---CCcEEEecC--------------CChhHHHHHHHcCCeEEEe
Q psy18092 119 DEIMINSIAVCAGSGGELLRGK---KADLYITGE--------------MSHHDVLDATHRGTTVLLL 168 (183)
Q Consensus 119 ~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGE--------------vkhH~~l~A~e~Gi~lId~ 168 (183)
++++++||+++-=.-...+++| +||++|+== +++-......+.++++..+
T Consensus 32 ~~~~v~kV~~avd~t~~vi~~Ai~~~ad~ii~HHplif~~~~~~~~~~~~~~~i~~li~~~I~ly~~ 98 (250)
T COG0327 32 PLEEVKKVAVALDATLAVLDEAIELGADLLIVHHPLIFWPVKSLAIDGPKGKRIKALIQNDINLYAA 98 (250)
T ss_pred CCcccceEEEEeeCCHHHHHHHHHCCCCEEEEcCchhcCCCccccccchHHHHHHHHHhCCCeEEEc
Confidence 4678999999988888888877 789887511 2344456677889998876
No 25
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=29.77 E-value=52 Score=29.37 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=34.2
Q ss_pred cEEEEEeCCchhhhhhC---------CCcEEEecCCChhHHHHHHHcCCeEEEe
Q psy18092 124 NSIAVCAGSGGELLRGK---------KADLYITGEMSHHDVLDATHRGTTVLLL 168 (183)
Q Consensus 124 ~rVAIcsGSG~s~i~~A---------gaDvfITGEvkhH~~l~A~e~Gi~lId~ 168 (183)
..|.+++|||..-++.+ .++++++|...++-+..|...|+ +...
T Consensus 56 ~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~ 108 (349)
T TIGR01364 56 YEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVV 108 (349)
T ss_pred ceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEE
Confidence 37999999987544332 37899999999999999999898 4443
No 26
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown]
Probab=29.00 E-value=53 Score=28.91 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=38.3
Q ss_pred eEEEEEeecCchhh-----------hhhHHHHHHHHHhcccCCCCCcc----ccccccccccccc
Q psy18092 46 LSSFSLRFRDDKTA-----------RDTVSRVVTRLFAMEKIPGSNPT----INKKKLDSYFDGK 95 (183)
Q Consensus 46 i~~~~~~~~~d~~~-----------~~~~~~~~~~~~~~~k~~~~~~~----~~~~~L~efi~k~ 95 (183)
+-+| |||..|.-+ |+.++.++-|+|++.+|+-.+.+ ..+.+|.+++...
T Consensus 83 L~vY-IHT~~~~vI~v~p~~R~Prny~RFiGLmeqLlk~~~i~~~~~e~Ll~v~~~~l~d~l~~~ 146 (223)
T COG1756 83 LRVY-IHTRNDYVIEVNPETRLPRNYNRFIGLMEQLLKKGRIPSNGGETLLEVEKNPLTDLLPEN 146 (223)
T ss_pred eeEE-EEecCCEEEEECCCccCCCCHHHHHHHHHHHHhcCCcCCCCCcEeeeeecCcHHHhcccc
Confidence 5666 799888765 67899999999999999988743 2278888888633
No 27
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=28.62 E-value=83 Score=23.00 Aligned_cols=31 Identities=10% Similarity=0.106 Sum_probs=27.4
Q ss_pred CCCcEEEecCCChhHHHHHHHcCCeEEEeCC
Q psy18092 140 KKADLYITGEMSHHDVLDATHRGTTVLLLEH 170 (183)
Q Consensus 140 AgaDvfITGEvkhH~~l~A~e~Gi~lId~GH 170 (183)
.+||++|+|-+.-.......+.|+.++-...
T Consensus 64 ~~~~vvi~~~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLCAKIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEeehhhCccHHHHHHHCCCEEEEecC
Confidence 3999999999999998888899999996654
No 28
>KOG0725|consensus
Probab=25.93 E-value=1.9e+02 Score=25.15 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=24.7
Q ss_pred ccEEEEEeCCchhh-------hhhCCCcEEEecCCChhH
Q psy18092 123 INSIAVCAGSGGEL-------LRGKKADLYITGEMSHHD 154 (183)
Q Consensus 123 I~rVAIcsGSG~s~-------i~~AgaDvfITGEvkhH~ 154 (183)
-.+||++||++.+. +.+.||.+.|||.-....
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~ 45 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERL 45 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45899999998742 334599999999988853
No 29
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=25.31 E-value=1.2e+02 Score=29.41 Aligned_cols=49 Identities=33% Similarity=0.470 Sum_probs=35.3
Q ss_pred CcccEEEEEeCCch-hhhhhCCCcEEEecCC----ChhHHHHHHHc-C-CeEEEeC
Q psy18092 121 IMINSIAVCAGSGG-ELLRGKKADLYITGEM----SHHDVLDATHR-G-TTVLLLE 169 (183)
Q Consensus 121 ~~I~rVAIcsGSG~-s~i~~AgaDvfITGEv----khH~~l~A~e~-G-i~lId~G 169 (183)
+++.-||+++|.|- .++++.|||++|.|.- +-.+.+.|.+. + -.+|...
T Consensus 313 ~~~~ivAv~~g~g~~~~f~~~Ga~~vi~ggqt~nPS~~dll~ai~~~~a~~V~iLP 368 (530)
T TIGR03599 313 KEYAIVAVAPGEGIAELFKSLGADVVIEGGQTMNPSTEDILKAIEKVNAKNVFVLP 368 (530)
T ss_pred CCeEEEEEcCCchHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHhCCCCeEEEec
Confidence 45667999999997 5677789999999875 55677777754 2 2444443
No 30
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=24.84 E-value=1.2e+02 Score=25.58 Aligned_cols=47 Identities=21% Similarity=0.204 Sum_probs=36.4
Q ss_pred EEeCCchhh-------hhhCCCcEEEecCCChhHHHHHHHcCCeEEEeCCccch
Q psy18092 128 VCAGSGGEL-------LRGKKADLYITGEMSHHDVLDATHRGTTVLLLEHSDSE 174 (183)
Q Consensus 128 IcsGSG~s~-------i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~GHyaTE 174 (183)
++-|+|.-+ ..++|+|.++++-........+.+.|+.++-..|..+|
T Consensus 63 ~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~~v~~~~~~~~~~~~~G~~t~~E 116 (206)
T PRK09140 63 ALIGAGTVLSPEQVDRLADAGGRLIVTPNTDPEVIRRAVALGMVVMPGVATPTE 116 (206)
T ss_pred cEEeEEecCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHCCCcEEcccCCHHH
Confidence 566788722 23349999999998888888888889988888887766
No 31
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=24.66 E-value=24 Score=32.80 Aligned_cols=31 Identities=32% Similarity=0.273 Sum_probs=18.2
Q ss_pred CCcEEEecCCChh-----------HHHHHHHcCCeEEE-eCCc
Q psy18092 141 KADLYITGEMSHH-----------DVLDATHRGTTVLL-LEHS 171 (183)
Q Consensus 141 gaDvfITGEvkhH-----------~~l~A~e~Gi~lId-~GHy 171 (183)
++|++||||-+.. .+..|.+.++.++. +|+-
T Consensus 284 ~aDlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviav~G~~ 326 (377)
T PF02595_consen 284 DADLVITGEGRLDAQTLAGKVPGGVARLAKKHGVPVIAVAGSV 326 (377)
T ss_dssp C-SEEEE--CECSTTTTTTCHHHHHHCCHCCTT--EEEEECEC
T ss_pred CCCEEEECccccccccCCCcHHHHHHHHHHHcCCcEEEEeCCC
Confidence 6999999996654 35567788887776 4553
No 32
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=24.62 E-value=1.2e+02 Score=23.39 Aligned_cols=39 Identities=23% Similarity=0.461 Sum_probs=29.5
Q ss_pred CCCCCeeEEEEEeecCchhhhhhHHHHHHHHHhcccCCCCCcc
Q psy18092 40 GWLSPILSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPT 82 (183)
Q Consensus 40 ~~~~~~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~~~~~~~ 82 (183)
||+..-..-=+|-.|-|.+. .|+|.+.|++|-..++|++
T Consensus 10 G~L~~~~~y~sv~V~~~tt~----~dvv~eaL~kfGl~~~~~~ 48 (97)
T cd01783 10 GWLRVGVAYVSIRVNKDTTV----QDVILEVLPLFGLQAECPE 48 (97)
T ss_pred CccccCcceEEEEecccchH----HHHHHHHHHHhCcccCCcc
Confidence 67765433338888989888 8899999988888887753
No 33
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=23.96 E-value=84 Score=28.12 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=32.3
Q ss_pred cEEEEEeCCchhhhhhC---------CCcEEEecCCChhHHHHHHHcCCe
Q psy18092 124 NSIAVCAGSGGELLRGK---------KADLYITGEMSHHDVLDATHRGTT 164 (183)
Q Consensus 124 ~rVAIcsGSG~s~i~~A---------gaDvfITGEvkhH~~l~A~e~Gi~ 164 (183)
..|.+.+|||..-++.+ .++++++|...|+-+..|...|..
T Consensus 67 ~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~ 116 (360)
T PRK05355 67 YKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEV 116 (360)
T ss_pred cEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCc
Confidence 37889999998644322 478999999999998888888865
No 34
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=23.44 E-value=1.6e+02 Score=22.29 Aligned_cols=31 Identities=3% Similarity=-0.005 Sum_probs=27.2
Q ss_pred CCCcEEEecCCChhHHHHHHHcCCeEEEeCC
Q psy18092 140 KKADLYITGEMSHHDVLDATHRGTTVLLLEH 170 (183)
Q Consensus 140 AgaDvfITGEvkhH~~l~A~e~Gi~lId~GH 170 (183)
.+||++|+|-+.........+.|+.++-.+-
T Consensus 62 ~~c~vvi~~~IG~~a~~~L~~~gI~~~~~~~ 92 (119)
T TIGR02663 62 KDCAILYCLAIGGPAAAKVVAAKIHPIKVNE 92 (119)
T ss_pred CCCcEEEEhhcCccHHHHHHHcCCeeEecCC
Confidence 3999999999999998888899999987643
No 35
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=23.10 E-value=41 Score=27.17 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=31.0
Q ss_pred EEEEeCCchhhhhhCCCcEEEecCCChhHHHHHHHcCCeEEEe
Q psy18092 126 IAVCAGSGGELLRGKKADLYITGEMSHHDVLDATHRGTTVLLL 168 (183)
Q Consensus 126 VAIcsGSG~s~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~ 168 (183)
..=|.|+-..+-+++|||..+||.+.=-.-+.. ..++.+.|+
T Consensus 65 l~~C~gC~~~~Ar~~GAd~~lvG~VqKvS~Lil-~~~~~v~Dv 106 (140)
T PF11684_consen 65 LRKCNGCEARIARELGADYVLVGEVQKVSNLIL-NMNVYVRDV 106 (140)
T ss_pred cccCCCHHHHHHHHcCCCEEEEEEEechhhhhe-eeeEEEEEC
Confidence 455778888888899999999999876654432 445666665
No 36
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=22.95 E-value=78 Score=28.13 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=26.0
Q ss_pred EEEEEeCCchhh-------hhhCCCcEEEecCCChhHHHHHHHcC
Q psy18092 125 SIAVCAGSGGEL-------LRGKKADLYITGEMSHHDVLDATHRG 162 (183)
Q Consensus 125 rVAIcsGSG~s~-------i~~AgaDvfITGEvkhH~~l~A~e~G 162 (183)
||+++||+++++ +.++|+.++++|=-..--.-.|.+.+
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~ 51 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIG 51 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhc
Confidence 899999998854 44558999888865554333444444
No 37
>PRK06483 dihydromonapterin reductase; Provisional
Probab=22.91 E-value=2.4e+02 Score=22.46 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=15.8
Q ss_pred EEEEEeCCchhh-------hhhCCCcEEEecCCC
Q psy18092 125 SIAVCAGSGGEL-------LRGKKADLYITGEMS 151 (183)
Q Consensus 125 rVAIcsGSG~s~-------i~~AgaDvfITGEvk 151 (183)
+.++++|+++.+ +.+.|+++++++--.
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 36 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTH 36 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence 456677765532 223378888876443
No 38
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=22.58 E-value=3.4e+02 Score=21.47 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=46.1
Q ss_pred ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCch--hhh-hhC-CCcEEEecCCChhHHHHHHHcCCeEEEe-
Q psy18092 94 GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGG--ELL-RGK-KADLYITGEMSHHDVLDATHRGTTVLLL- 168 (183)
Q Consensus 94 k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~--s~i-~~A-gaDvfITGEvkhH~~l~A~e~Gi~lId~- 168 (183)
.+.++++.+-|.|.+.. -.....++.|-|-+|+-+ .+| ..+ .-|++||.|..- +..+.+.|..+++.
T Consensus 6 a~r~~i~vi~Van~~h~------~~~~~~~~~i~Vd~g~DaaD~~I~~~~~~gDiVITqDigL--A~~~l~Kga~vl~~r 77 (130)
T PF02639_consen 6 AKRYGIPVIFVANYSHR------LPRSPYVEMIVVDSGFDAADFYIVNHAKPGDIVITQDIGL--ASLLLAKGAYVLNPR 77 (130)
T ss_pred HHHHCCEEEEEeCCCcc------CCCCCCeEEEEECCCCChHHHHHHHcCCCCCEEEECCHHH--HHHHHHCCCEEECCC
Confidence 45678888888884211 111245666777666654 233 444 579999999765 44566778999884
Q ss_pred CCccch
Q psy18092 169 EHSDSE 174 (183)
Q Consensus 169 GHyaTE 174 (183)
|+-.|+
T Consensus 78 G~~yt~ 83 (130)
T PF02639_consen 78 GKEYTK 83 (130)
T ss_pred CCCCCH
Confidence 655553
No 39
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=22.11 E-value=61 Score=28.12 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=7.7
Q ss_pred hhhhhCCCcEEEec
Q psy18092 135 ELLRGKKADLYITG 148 (183)
Q Consensus 135 s~i~~AgaDvfITG 148 (183)
.+++++|++-.|-|
T Consensus 78 ~mL~d~G~~~viiG 91 (242)
T cd00311 78 EMLKDAGAKYVIIG 91 (242)
T ss_pred HHHHHcCCCEEEeC
Confidence 34555555555555
No 40
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=21.93 E-value=59 Score=28.40 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=22.9
Q ss_pred hhhhhCCCcEEEecCC--Chh------H----HHHHHHcCCe-EEEeCCccchH
Q psy18092 135 ELLRGKKADLYITGEM--SHH------D----VLDATHRGTT-VLLLEHSDSER 175 (183)
Q Consensus 135 s~i~~AgaDvfITGEv--khH------~----~l~A~e~Gi~-lId~GHyaTE~ 175 (183)
.+++++|++..|-|=. +.. . +..|.+.|+. ++++|=...|+
T Consensus 80 ~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r 133 (250)
T PRK00042 80 EMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEER 133 (250)
T ss_pred HHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHH
Confidence 5677778888887722 111 1 3346777774 44456543343
No 41
>PF13470 PIN_3: PIN domain
Probab=21.63 E-value=59 Score=23.66 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=10.0
Q ss_pred CCcEEEecCCC
Q psy18092 141 KADLYITGEMS 151 (183)
Q Consensus 141 gaDvfITGEvk 151 (183)
+||.+||||.+
T Consensus 109 ~ad~iVT~D~k 119 (119)
T PF13470_consen 109 KADYIVTGDKK 119 (119)
T ss_pred CCCEEEeCCCC
Confidence 79999999975
No 42
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=21.30 E-value=65 Score=27.42 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=11.8
Q ss_pred EecCCChhHHHHHHHcCCeEEEeCCc
Q psy18092 146 ITGEMSHHDVLDATHRGTTVLLLEHS 171 (183)
Q Consensus 146 ITGEvkhH~~l~A~e~Gi~lId~GHy 171 (183)
-|||++--.. .+.|+..+.+||+
T Consensus 68 ~TGevS~~mL---kd~G~~~viiGHS 90 (205)
T TIGR00419 68 HTGEISAEML---KDIGAKGTLINHS 90 (205)
T ss_pred ccCcCCHHHH---HHcCCCEEEECcc
Confidence 3555553332 3446666666664
No 43
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=21.05 E-value=1.1e+02 Score=21.95 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=22.2
Q ss_pred CccccCCCCcceecCCCCCCCeeEEEEEeecCchh
Q psy18092 24 PRVCFPPGTDNVRSRNGWLSPILSSFSLRFRDDKT 58 (183)
Q Consensus 24 ~~~~f~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~ 58 (183)
..||||.+-..+++.. -..+..-+|.| |+.|++
T Consensus 47 ~~FCfP~G~~~~~~~~-~~~~~~f~FvL-T~~dG~ 79 (89)
T smart00800 47 PLFCFPEGLLFVTQKS-SKDPQFFSFVL-TDIDGS 79 (89)
T ss_pred CeeECCCCeEeecccC-CCCCcEEEEEE-ECCCCC
Confidence 4589998887764222 02345788888 888875
No 44
>PTZ00333 triosephosphate isomerase; Provisional
Probab=20.82 E-value=67 Score=28.19 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=8.2
Q ss_pred hhhhhCCCcEEEec
Q psy18092 135 ELLRGKKADLYITG 148 (183)
Q Consensus 135 s~i~~AgaDvfITG 148 (183)
.++.++|++-.+-|
T Consensus 83 ~mL~d~G~~~viiG 96 (255)
T PTZ00333 83 EMLKDLGINWTILG 96 (255)
T ss_pred HHHHHcCCCEEEEC
Confidence 45555566666665
No 45
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=20.49 E-value=1.5e+02 Score=25.53 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=41.9
Q ss_pred EEeeeCCccccCCCCcceecCCCCCCCeeEEEEEeecCchhhhhhHHHHHHHHHh-cccCCCCCcccccccccccccccc
Q psy18092 18 CLLSTRPRVCFPPGTDNVRSRNGWLSPILSSFSLRFRDDKTARDTVSRVVTRLFA-MEKIPGSNPTINKKKLDSYFDGKH 96 (183)
Q Consensus 18 ~~i~t~~~~~f~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~~~~~~~~~~~~-~~k~~~~~~~~~~~~L~efi~k~~ 96 (183)
-++.||||+.=++...=-.-+- .+ ......-.-.|+...-...++.|+++++ .-=+-|-+...=..+=..+.+...
T Consensus 165 ~ILl~H~Plyr~~~~~cg~~re--~~-~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~h~~~~~~~~ 241 (257)
T cd08163 165 RILLTHVPLYRPPNTSCGPLRE--SK-TPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVVHEYQFNGKS 241 (257)
T ss_pred EEEEeccccccCCCCCCCCccc--cC-CCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeEcccccCCCC
Confidence 3688999985444421110000 00 0111223345665555566888888886 333444444333222221122344
Q ss_pred cCcceeEeecc
Q psy18092 97 FGVSIHTVANT 107 (183)
Q Consensus 97 f~v~~irv~n~ 107 (183)
.+++++||.+.
T Consensus 242 ~~~~E~tv~S~ 252 (257)
T cd08163 242 GSTREITVKSI 252 (257)
T ss_pred CCceEEEeccc
Confidence 56777777653
No 46
>PRK14567 triosephosphate isomerase; Provisional
Probab=20.12 E-value=72 Score=28.15 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=9.4
Q ss_pred hhhhhCCCcEEEec
Q psy18092 135 ELLRGKKADLYITG 148 (183)
Q Consensus 135 s~i~~AgaDvfITG 148 (183)
.++++.|++..|-|
T Consensus 79 ~mLkd~G~~yviiG 92 (253)
T PRK14567 79 RMLEDIGCDYLLIG 92 (253)
T ss_pred HHHHHcCCCEEEEC
Confidence 45666677777766
Done!