Query psy18092
Match_columns 183
No_of_seqs 161 out of 1093
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 22:23:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yyb_A Hypothetical protein TT 100.0 1.2E-35 3.9E-40 251.0 7.5 149 17-182 58-222 (242)
2 2fyw_A Conserved hypothetical 100.0 6.1E-35 2.1E-39 249.1 5.0 155 17-182 60-238 (267)
3 1nmo_A Hypothetical protein YB 100.0 3.4E-34 1.2E-38 242.4 3.5 150 17-182 57-227 (247)
4 2nyd_A UPF0135 protein SA1388; 100.0 1.4E-33 4.8E-38 252.6 5.9 149 18-182 63-341 (370)
5 2gx8_A NIF3-related protein; s 100.0 1.5E-33 5E-38 254.7 4.6 150 18-182 87-368 (397)
6 3rxy_A NIF3 protein; structura 99.7 1.5E-18 5E-23 151.2 4.2 123 46-182 130-262 (278)
7 2fyw_A Conserved hypothetical 58.4 9.7 0.00033 31.7 4.2 54 117-171 32-102 (267)
8 1rdu_A Conserved hypothetical 50.9 20 0.00068 25.5 4.3 41 130-170 48-91 (116)
9 4fgs_A Probable dehydrogenase 50.6 15 0.0005 30.8 4.0 27 124-150 29-62 (273)
10 2yx6_A Hypothetical protein PH 49.3 18 0.00061 26.0 3.8 34 135-168 57-90 (121)
11 1eo1_A Hypothetical protein MT 48.4 41 0.0014 24.2 5.7 36 135-170 59-94 (124)
12 2wfb_A Putative uncharacterize 42.0 22 0.00075 25.5 3.3 35 136-170 62-96 (120)
13 4hp8_A 2-deoxy-D-gluconate 3-d 41.5 23 0.0008 29.3 3.9 40 124-163 9-56 (247)
14 1o13_A Probable NIFB protein; 40.4 56 0.0019 24.3 5.5 35 135-169 70-104 (136)
15 4b79_A PA4098, probable short- 39.3 18 0.00061 29.9 2.8 25 124-148 11-42 (242)
16 4g81_D Putative hexonate dehyd 39.0 15 0.00051 30.4 2.3 25 124-148 9-40 (255)
17 4h15_A Short chain alcohol deh 38.6 17 0.00057 29.9 2.5 26 124-149 11-43 (261)
18 2gx8_A NIF3-related protein; s 38.1 30 0.001 31.0 4.2 54 117-171 58-128 (397)
19 2nyd_A UPF0135 protein SA1388; 37.4 28 0.00095 30.8 3.8 54 117-171 34-103 (370)
20 1nmo_A Hypothetical protein YB 35.6 36 0.0012 28.0 4.0 51 120-171 32-98 (247)
21 3ged_A Short-chain dehydrogena 35.2 53 0.0018 26.9 5.0 25 124-148 2-33 (247)
22 4gkb_A 3-oxoacyl-[acyl-carrier 35.2 23 0.00077 29.1 2.8 29 124-152 7-42 (258)
23 2re2_A Uncharacterized protein 34.7 71 0.0024 23.7 5.3 34 136-170 74-107 (136)
24 4fn4_A Short chain dehydrogena 33.9 24 0.00083 29.1 2.8 25 124-148 7-38 (254)
25 4fs3_A Enoyl-[acyl-carrier-pro 33.8 23 0.00079 28.3 2.6 26 124-149 6-40 (256)
26 1meo_A Phosophoribosylglycinam 30.7 94 0.0032 24.9 5.7 46 125-170 2-58 (209)
27 2yyb_A Hypothetical protein TT 30.4 42 0.0014 27.5 3.6 50 121-171 34-98 (242)
28 3gem_A Short chain dehydrogena 30.2 62 0.0021 25.7 4.6 28 125-152 28-62 (260)
29 3edm_A Short chain dehydrogena 26.8 70 0.0024 25.2 4.3 28 124-151 8-42 (259)
30 2ab9_A Pro-SFTI-1; protein, be 26.5 23 0.00077 21.0 0.9 11 22-32 20-30 (31)
31 1p90_A NAFY protein, hypotheti 26.1 1.1E+02 0.0039 22.9 5.2 30 140-169 66-95 (145)
32 3cwc_A Putative glycerate kina 21.9 40 0.0014 30.3 2.1 30 141-170 287-328 (383)
33 3oid_A Enoyl-[acyl-carrier-pro 21.8 1E+02 0.0034 24.3 4.3 27 125-151 5-38 (258)
34 2qtd_A Uncharacterized protein 21.8 2E+02 0.0069 19.8 5.6 34 135-169 50-83 (105)
35 3v2g_A 3-oxoacyl-[acyl-carrier 21.4 1.1E+02 0.0038 24.3 4.5 27 124-150 31-64 (271)
36 3tfo_A Putative 3-oxoacyl-(acy 21.1 54 0.0018 26.3 2.6 25 124-148 4-35 (264)
37 3p19_A BFPVVD8, putative blue 21.0 63 0.0022 25.8 2.9 25 124-148 16-47 (266)
38 3f1l_A Uncharacterized oxidore 20.9 62 0.0021 25.3 2.8 25 124-148 12-43 (252)
39 3h7a_A Short chain dehydrogena 20.8 61 0.0021 25.5 2.8 25 125-149 8-39 (252)
40 1aw2_A Triosephosphate isomera 20.8 53 0.0018 27.7 2.5 15 135-149 83-97 (256)
41 3lf2_A Short chain oxidoreduct 20.8 61 0.0021 25.6 2.8 26 124-149 8-40 (265)
42 2btm_A TIM, protein (triosepho 20.8 54 0.0018 27.7 2.5 14 135-148 80-93 (252)
43 1tre_A Triosephosphate isomera 20.7 54 0.0018 27.7 2.5 15 135-149 81-95 (255)
44 3orf_A Dihydropteridine reduct 20.7 62 0.0021 25.3 2.8 28 121-148 19-53 (251)
45 3u5t_A 3-oxoacyl-[acyl-carrier 20.4 94 0.0032 24.7 3.9 26 124-149 27-59 (267)
46 3sju_A Keto reductase; short-c 20.3 63 0.0021 25.8 2.8 26 124-149 24-56 (279)
47 4fc7_A Peroxisomal 2,4-dienoyl 20.3 64 0.0022 25.7 2.8 27 124-150 27-60 (277)
48 3v2h_A D-beta-hydroxybutyrate 20.2 66 0.0023 25.8 2.9 26 124-149 25-57 (281)
49 3o26_A Salutaridine reductase; 20.2 58 0.002 25.5 2.5 25 124-148 12-43 (311)
50 3is3_A 17BETA-hydroxysteroid d 20.1 1.1E+02 0.0039 24.0 4.3 27 124-150 18-51 (270)
51 3gaz_A Alcohol dehydrogenase s 20.1 1.4E+02 0.0049 24.5 5.0 42 124-167 152-199 (343)
No 1
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-35 Score=251.01 Aligned_cols=149 Identities=20% Similarity=0.220 Sum_probs=122.8
Q ss_pred EEEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhh-hHHHHHHHHHhcccCC----CCCc-c
Q psy18092 17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARD-TVSRVVTRLFAMEKIP----GSNP-T 82 (183)
Q Consensus 17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~-~~~~~~~~~~~~~k~~----~~~~-~ 82 (183)
+=|||||||++| +.+.. ..+|++++ |++||.|||+|..- + ++|+.+-++|+-.... |--- .
T Consensus 58 adlIitHHp~~f-~~~~~---~~~~~~~~i~~li~~~I~ly~~Ht~lD~~~-~~G~n~~La~~Lgl~~~~~l~~G~ig~l 132 (242)
T 2yyb_A 58 VDFLIVHHGLFW-GKPFP---IVGHHKRRLETLFQGGINLYAAHLPLDAHE-EVGNNFVLARELGLVDLTPWDVGVKGRF 132 (242)
T ss_dssp CSEEEEEECSCS-SCCCC---SCHHHHHHHHHHHHTTCEEEECSHHHHHCT-TTCHHHHHHHTTTCCSCCCCSTTCCCCC
T ss_pred CCEEEECCCcCc-Ccccc---cccHHHHHHHHHHHCCCeEEEeccHHhcCC-CcCHHHHHHHHcCCCCCccceeEEEEEe
Confidence 348999999999 88877 23345555 99999999999876 7 9999999999822211 2111 1
Q ss_pred ccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhCCCcEEEecCCChhHHHHHHH
Q psy18092 83 INKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDVLDATH 160 (183)
Q Consensus 83 ~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~AgaDvfITGEvkhH~~l~A~e 160 (183)
+...+++||.+ |+.|+ +.+|+.. +.+++|+|||+|+|||++++++||||+|||||++||++++|++
T Consensus 133 ~~~~t~~~l~~~vk~~l~-~~vr~~g-----------~~~~~i~~VAv~~GsG~~~~~~agaD~~iTGd~~~h~~~~A~e 200 (242)
T 2yyb_A 133 PQPTPLLQVADRLGQLTG-MQPLVHQ-----------GGLDHVETVILVSGSGTGLLPKVDADLFVTGEPKHSVFHETFE 200 (242)
T ss_dssp CCCSCBSTHHHHHHHTTS-SCCEEEE-----------SSCSBCCCEEEECSSCGGGGGGCCSSEEEESCCCGGGHHHHHH
T ss_pred CCCcCHHHHHHHHHHHcc-cCeEEec-----------CCCCceeEEEEEcCCCHHHHHHcCCCEEEEecCCHHHHHHHHH
Confidence 22577888887 88898 7777753 4566799999999999999999999999999999999999999
Q ss_pred cCCeEEEeCCccchHHHHhhcc
Q psy18092 161 RGTTVLLLEHSDSERPFLQFFS 182 (183)
Q Consensus 161 ~Gi~lId~GHyaTE~~~v~~L~ 182 (183)
+|+++|++|||+||++|++.|+
T Consensus 201 ~gi~~i~~GH~~tE~~~~~~l~ 222 (242)
T 2yyb_A 201 RGLNVIYAGHYDTETFGVKALA 222 (242)
T ss_dssp TTCEEEECCHHHHTTHHHHHHH
T ss_pred CCCeEEECCcHHHHHHHHHHHH
Confidence 9999999999999999998875
No 2
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=100.00 E-value=6.1e-35 Score=249.06 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=122.4
Q ss_pred EEEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhc--ccCCCC----Cc-
Q psy18092 17 VCLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAM--EKIPGS----NP- 81 (183)
Q Consensus 17 ~~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~--~k~~~~----~~- 81 (183)
+=|||||||++|++++..... +|++++ |++||.|||+|..- +++|+.+-++|+- .+.... ..
T Consensus 60 adlIitHHP~~f~~~~~~~~~--~~~~~~i~~li~~~I~lya~Ht~lD~~~-~G~n~~La~~Lgl~~~~~l~~~~~~~g~ 136 (267)
T 2fyw_A 60 VDLIIVKHAPIFRPIKDLLAS--RPQNQIYIDLIKHDIAVYVSHTNIDIVE-NGLNDWFCQMLGIEETTYLQETGPERGI 136 (267)
T ss_dssp CSEEEESSCSCCSCCCCCCTT--SHHHHHHHHHHHTTCEEEECSHHHHHST-TSHHHHHHHHHTCEEEEEEEEEETTEEE
T ss_pred CCEEEECCccccCCccccccC--chHHHHHHHHHHCCCeEEEeeccccccC-CCHHHHHHHHcCCCcccccccCCCCCCe
Confidence 348999999999999887533 335554 99999999999776 6999999999982 221110 00
Q ss_pred ----cccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEeCCchhhhhhC---CCcEEEecCCCh
Q psy18092 82 ----TINKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGK---KADLYITGEMSH 152 (183)
Q Consensus 82 ----~~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEvkh 152 (183)
+....+++||++ |+.|+++.+|+... ..++.+++|+|||+|+|||++++++| |||+|||||++|
T Consensus 137 G~ig~l~~~t~~el~~~vk~~l~~~~vr~~~~-------~~g~~~~~I~rVAv~~GsG~~~~~~a~~~gaD~~ITGd~~~ 209 (267)
T 2fyw_A 137 GRIGNIQPQTFWELAQQVKQVFDLDSLRMVHY-------QEDDLQKPISRVAICGGSGQSFYKDALAKGADVYITGDIYY 209 (267)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHTTCSCCEEECS-------CTTGGGSEEEEEEEESSSCGGGHHHHHHTTCSEEEESCCCH
T ss_pred EEEEEeccCCHHHHHHHHHHHcCCCeEEEEec-------cCCCCCCceeEEEEEcCCCHHHHHHHHHcCCCEEEEccCcH
Confidence 012456777777 88898888887620 00245667999999999999998876 999999999999
Q ss_pred hHHHHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092 153 HDVLDATHRGTTVLLLEHSDSERPFLQFFS 182 (183)
Q Consensus 153 H~~l~A~e~Gi~lId~GHyaTE~~~v~~L~ 182 (183)
|++++|.++|+++|++||| ||++|++.|+
T Consensus 210 h~~~~A~e~gi~~i~~GH~-tE~~~~~~l~ 238 (267)
T 2fyw_A 210 HTAQDMLSDGLLALDPGHY-IEVIFVEKIA 238 (267)
T ss_dssp HHHHHHHHTTCEEEECCGG-GGGHHHHHHH
T ss_pred HHHHHHHHCCCeEEECCcH-HHHHHHHHHH
Confidence 9999999999999999999 9999998875
No 3
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=99.98 E-value=3.4e-34 Score=242.38 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=117.4
Q ss_pred EEEeeeCCcccc-CCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhcccC--C-C--CCcc
Q psy18092 17 VCLLSTRPRVCF-PPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAMEKI--P-G--SNPT 82 (183)
Q Consensus 17 ~~~i~t~~~~~f-~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~--~-~--~~~~ 82 (183)
+=|||||||++| ++.+... ++++++ |++||.|||+|..-..++|+.+-++|+-... . | ---+
T Consensus 57 adlIitHHP~~f~~~~~~i~----~~~~~~i~~li~~~I~ly~~HtnlD~~~~~G~n~~La~~Lgl~~~~~~~g~G~ig~ 132 (247)
T 1nmo_A 57 ADAVIVHHGYFWKGESPVIR----GMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGE 132 (247)
T ss_dssp CSEEEEEECSCCTTSCCCCC----THHHHHHHHHHHTTCEEEECCHHHHHCTTTSHHHHHHHHHTEEEEEEEETTEEEEE
T ss_pred CCEEEECCchhccCCCcccc----chHHHHHHHHHHCCCEEEEeeechhhCCCCCHHHHHHHHcCCCCccccCCeEEEEE
Confidence 348999999999 7776643 234443 9999999999998744999999999982211 1 1 1111
Q ss_pred -ccccccccccc--ccccCcceeEeecccceeEEeecCCC-CCcccEEEEEeCCchhhhhhC---CCcEEEecCCChhHH
Q psy18092 83 -INKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLD-EIMINSIAVCAGSGGELLRGK---KADLYITGEMSHHDV 155 (183)
Q Consensus 83 -~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~-~~~I~rVAIcsGSG~s~i~~A---gaDvfITGEvkhH~~ 155 (183)
....+++||.+ |+.|+.+ +++. ++. +++|+|||+|+|||++++++| |||+|||||++||++
T Consensus 133 l~~~~t~~~l~~~vk~~l~~~-~~~~-----------g~~~~~~i~~VAv~~GsG~~~~~~a~~~gaD~~iTGd~~~h~~ 200 (247)
T 1nmo_A 133 LTMPVPGLELASWIEARLGRK-PLWC-----------GDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTI 200 (247)
T ss_dssp EEEEECHHHHHHHHHHHHTSC-CEEE-----------CTTSCSSEEEEEECSSSCGGGHHHHHHHCCSEEEESCCCHHHH
T ss_pred eCCCCcHHHHHHHHHHHcCCC-eEEE-----------CCCCcCccCEEEEECCCcHHHHHHHHHcCCCEEEEcCccHHHH
Confidence 12467777777 7778765 3333 233 467999999999999999877 999999999999999
Q ss_pred HHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092 156 LDATHRGTTVLLLEHSDSERPFLQFFS 182 (183)
Q Consensus 156 l~A~e~Gi~lId~GHyaTE~~~v~~L~ 182 (183)
++|+++|+++|++|||+||++|++.|+
T Consensus 201 ~~a~e~gi~~i~~GH~~tE~~~~~~l~ 227 (247)
T 1nmo_A 201 HSAREQGLHFYAAGHHATERGGIRALS 227 (247)
T ss_dssp HHHHHTTCEEEECCHHHHTSHHHHHHH
T ss_pred HHHHHCCCeEEEcCCHHHHHHHHHHHH
Confidence 999999999999999999999998875
No 4
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=99.98 E-value=1.4e-33 Score=252.60 Aligned_cols=149 Identities=19% Similarity=0.264 Sum_probs=118.5
Q ss_pred EEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHh--cccCCCC--------
Q psy18092 18 CLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFA--MEKIPGS-------- 79 (183)
Q Consensus 18 ~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~--~~k~~~~-------- 79 (183)
=|||||||++|+|+++.... +| +++ |++||.|||+|..- +++||.+-+.|+ ..+....
T Consensus 63 dlIItHHPlif~~~k~i~~~--~~-~r~i~~li~~~Ialya~HTnlD~~~-~GvNd~LA~~Lgl~~~~~l~~~~~~~~kl 138 (370)
T 2nyd_A 63 NTIISHHPLIFKGVTSLKAN--GY-GLIIRKLIQHDINLIAMHTNLDVNP-YGVNMMLAKVMGLKNISIINNQQDVYYKV 138 (370)
T ss_dssp CEEEESSCSSCSCCSCCCSS--TH-HHHHHHHHHTTCEEEECCHHHHTST-TSHHHHHHHHTTCEEEEECSEEEEEEEEE
T ss_pred CEEEECCCcccCCccccCcC--CH-HHHHHHHHHCCCeEEEeechhhccC-CcHHHHHHHHcCCCcccccCcccccccee
Confidence 48999999999999977432 34 444 99999999999987 699999999997 1111110
Q ss_pred ----------------------------------------------C---------------------------------
Q psy18092 80 ----------------------------------------------N--------------------------------- 80 (183)
Q Consensus 80 ----------------------------------------------~--------------------------------- 80 (183)
|
T Consensus 139 ~v~vP~~~~~~v~~al~~aGag~ig~Y~~csf~~~G~G~F~p~~~a~P~ig~~g~~~~v~e~rie~i~~~~~~~~v~~al 218 (370)
T 2nyd_A 139 QTYIPKDNVGPFKDKLSENGLAQEGNYEYCFFESEGRGQFKPVGEANPTIGQIDKIEDVDEVKIEFMIDAYQKSRAEQLI 218 (370)
T ss_dssp C---------------------------------------------------------------CEEECSTHHHHHHHHH
T ss_pred EEecchhhHHHHHHHHHhcccccccccccceecccccceeccccccCCccccccccccccceEEEEEechhhHHHHHHHH
Confidence 0
Q ss_pred ----------------------c-----c-ccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEEEe
Q psy18092 81 ----------------------P-----T-INKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCA 130 (183)
Q Consensus 81 ----------------------~-----~-~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAIcs 130 (183)
. + +...+++||++ |+.|+++.+|+. ++.+++|+|||+|+
T Consensus 219 ~~~hpyee~ayd~~~l~~~~~~GlGriG~L~~p~tl~~~~~~vk~~l~~~~vr~~-----------g~~~~~I~~VAvc~ 287 (370)
T 2nyd_A 219 KQYHPYETPVFDFIEIKQTSLYGLGVMAEVDNQMTLEDFAADIKSKLNIPSVRFV-----------GESNQKIKRIAIIG 287 (370)
T ss_dssp CC-----CCCCCEEEEEEEEEEESCEEEEEEEEEEHHHHHHHHHHHTTCSCCEEE-----------SCTTCEEEEEEECC
T ss_pred HhhCCccccccccccccccCCCCeEEEEEcCCCCCHHHHHHHHHHHcCCCceEEe-----------cCCCCcccEEEEEc
Confidence 0 0 01245555665 777777766665 35677899999999
Q ss_pred CCchhhhhhC---CCcEEEecCCChhHHHHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092 131 GSGGELLRGK---KADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFS 182 (183)
Q Consensus 131 GSG~s~i~~A---gaDvfITGEvkhH~~l~A~e~Gi~lId~GHyaTE~~~v~~L~ 182 (183)
|||++++.+| |||+|||||++||++++|.++|+++||+|||+|| ++++.|+
T Consensus 288 GsG~~~i~~a~~~gaDvyITGD~~~H~~~~A~~~gi~vid~GH~~tE-~~~~~l~ 341 (370)
T 2nyd_A 288 GSGIGYEYQAVQQGADVFVTGDIKHHDALDAKIHGVNLIDINHYSEY-VMKEGLK 341 (370)
T ss_dssp SCCTTSHHHHHHTTCSEEEESCCCHHHHHHHHHTTCCEEECCGGGGG-GHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEeCCccHHHHHHHHHCCCcEEEcCchHHH-HHHHHHH
Confidence 9999998776 9999999999999999999999999999999999 9998775
No 5
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=99.97 E-value=1.5e-33 Score=254.69 Aligned_cols=150 Identities=17% Similarity=0.242 Sum_probs=119.0
Q ss_pred EEeeeCCccccCCCCcceecCCCCCCCe--------eEEEEEeecCchhhhhhHHHHHHHHHhc--ccCCC---------
Q psy18092 18 CLLSTRPRVCFPPGTDNVRSRNGWLSPI--------LSSFSLRFRDDKTARDTVSRVVTRLFAM--EKIPG--------- 78 (183)
Q Consensus 18 ~~i~t~~~~~f~~~~~~~~~~~~~~~~~--------i~~~~~~~~~d~~~~~~~~~~~~~~~~~--~k~~~--------- 78 (183)
=|||||||++|+|+|+.... +|++++ |++||.|||+|..- +++||.+-++|+- .+...
T Consensus 87 dlIItHHPlif~~lk~i~~~--~~~~r~i~~li~~~Iavya~HTnlD~~~-~GvNd~LA~~LGl~~~~~L~~~~~~~~~K 163 (397)
T 2gx8_A 87 NVIIAHHPLIFNPLKAIHTD--KAYGKIIEKCIKNDIAIYAAHTNVDVAK-GGVNDLLAEALGLQNTEVLAPTYAEEMKK 163 (397)
T ss_dssp CEEEESSCSCCSCCSCCCTT--SHHHHHHHHHHHTTCEEEECCHHHHHST-TSHHHHHHHHTTCEEEEEEEEEEEEEEEE
T ss_pred CEEEECCccccCCccccCcC--cHHHHHHHHHHHCCCeEEEeechhhcCC-CCHHHHHHHHcCCCcccccCcccccccce
Confidence 48999999999999998644 346665 99999999999977 7999999999971 11000
Q ss_pred ----------------------------------------------CCc-------------------------------
Q psy18092 79 ----------------------------------------------SNP------------------------------- 81 (183)
Q Consensus 79 ----------------------------------------------~~~------------------------------- 81 (183)
.|+
T Consensus 164 l~v~vp~~~~~~v~~al~~aGag~ig~y~~csf~~~G~G~F~p~~~a~P~iG~~g~~~~v~e~rie~i~p~~~~~~v~~a 243 (397)
T 2gx8_A 164 VVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFSSEGTGTFVPQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIKA 243 (397)
T ss_dssp EEEEECHHHHHHHHHHHHHTTTTCBTTEEEEEEEEEEEEEEEEC-----------CCEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred eeEeccchhhHHHHHHhhhccccccccccccccccccceeeccccCCCCccCCcCcccccceeEEEEEecHHHHHHHHHH
Confidence 000
Q ss_pred -------------------------------cccccccccccc--ccccCcceeEeecccceeEEeecCCCCCcccEEEE
Q psy18092 82 -------------------------------TINKKKLDSYFD--GKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAV 128 (183)
Q Consensus 82 -------------------------------~~~~~~L~efi~--k~~f~v~~irv~n~s~~~~ir~~~~~~~~I~rVAI 128 (183)
.+...++.+|++ |+.|+++.+|+. ++.+++|+|||+
T Consensus 244 l~~~HPyee~ayd~~~l~~~~~~~GlGriG~L~~p~tl~~f~~~vk~~L~~~~vr~~-----------g~~~~~I~rVAv 312 (397)
T 2gx8_A 244 MVTAHPYEEVAYDVYPLDNKGETLGLGKIGYLQEEMTLGQFAEHVKQSLDVKGARVV-----------GKLDDKVRKVAV 312 (397)
T ss_dssp HHHHSSSSSCCEEEEEEEEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHTTCSCCEEE-----------SCTTSEEEEEEE
T ss_pred HHHhCCcccccccccccccccccCCeEEEEEcCCCCCHHHHHHHHHHHcCCCceEEE-----------CCCCCceeEEEE
Confidence 001244555555 667777666665 456778999999
Q ss_pred EeCCchhhhhhC---CCcEEEecCCChhHHHHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092 129 CAGSGGELLRGK---KADLYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFFS 182 (183)
Q Consensus 129 csGSG~s~i~~A---gaDvfITGEvkhH~~l~A~e~Gi~lId~GHyaTE~~~v~~L~ 182 (183)
|+|||++++.+| |||+|||||++||++++|.++|+++||+|||+|| ++++.|+
T Consensus 313 c~GSG~~~i~~A~~~gaDvyITGD~~~H~a~dA~e~Gi~vId~GH~~sE-~~~~~l~ 368 (397)
T 2gx8_A 313 LGGDGNKYINQAKFKGADVYVTGDMYYHVAHDAMMLGLNIVDPGHNVEK-VMKQGVQ 368 (397)
T ss_dssp EEEECGGGHHHHHHTTCSEEEEECCCHHHHHHHHHHTCEEEECCGGGGG-HHHHHHH
T ss_pred EcCCcHHHHHHHHHCCCCEEEecCCcHHHHHHHHHCCCcEEEcCchHHH-HHHHHHH
Confidence 999999999776 9999999999999999999999999999999999 9998775
No 6
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=99.72 E-value=1.5e-18 Score=151.15 Aligned_cols=123 Identities=11% Similarity=0.105 Sum_probs=88.3
Q ss_pred eEEEEEeecCchhhhhhHHHHHHHHHhcccCCCCCccc--ccccccccccccccCcceeEeecccceeEEeecCCCCCcc
Q psy18092 46 LSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTI--NKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMI 123 (183)
Q Consensus 46 i~~~~~~~~~d~~~~~~~~~~~~~~~~~~k~~~~~~~~--~~~~L~efi~k~~f~v~~irv~n~s~~~~ir~~~~~~~~I 123 (183)
+.--++||--|--.+..|.+++.+.++..+--...++. -..+++||-.... .+.+.+ ++.++++
T Consensus 130 ~p~m~~H~paD~~~~~~l~~~~~~~~~~~~p~~t~~dvi~~L~~ipEy~~a~~--~p~I~~------------g~~~~~v 195 (278)
T 3rxy_A 130 MPFLNIHLPLDEVGRRIMVKTIQEAVEPLGDEARVQDAIDALMTLPEFAGAAT--RIMVPV------------GAVDQPL 195 (278)
T ss_dssp CCEEECCHHHHHHHHHHHHHHHHHHHGGGGGGCBHHHHHHHHTTSHHHHSCSS--CCEEEE------------SCTTSBC
T ss_pred CcceecCcchHHHHHHHHHHHHhhhhhccCccchHHHHHHHHHhCchhhhcCC--CCEEEe------------CCCCCcC
Confidence 88899999999888666666665544322210211111 1445556644222 233333 4578899
Q ss_pred cEEEEEeCCch----hhhhhC---CCcEEEecCCChhHH-HHHHHcCCeEEEeCCccchHHHHhhcc
Q psy18092 124 NSIAVCAGSGG----ELLRGK---KADLYITGEMSHHDV-LDATHRGTTVLLLEHSDSERPFLQFFS 182 (183)
Q Consensus 124 ~rVAIcsGSG~----s~i~~A---gaDvfITGEvkhH~~-l~A~e~Gi~lId~GHyaTE~~~v~~L~ 182 (183)
+||||++|+|. +.++++ |+|+|||||++|+.+ ..|.|.|+++|.+|||+||.+|+++|+
T Consensus 196 gkIaV~~GgGtsG~~~~i~~a~~~GvDt~ITGe~~~~~~~~~A~E~ginVI~AGHyATEt~Gv~aL~ 262 (278)
T 3rxy_A 196 GKIAVVHGAGTNGGYAVARAYFDHGVRTVLYIHIAPEEAERLRREGGGNLIVTGHIASDLVGINRYV 262 (278)
T ss_dssp CSEEECCSSSSCCHHHHHHHHHHTTCCEEEESCCCHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCCcHHHHHHHHHcCCCEEEEecCchHHHHHHHHHcCCeEEEeccchHhHHHHHHHH
Confidence 99999999554 446655 999999999999999 999999999999999999999999885
No 7
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=58.40 E-value=9.7 Score=31.72 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=40.0
Q ss_pred CCCCCcccEEEEEeCCchhhhhhC---CCcEEEec-------C-------CChhHHHHHHHcCCeEEEeCCc
Q psy18092 117 DLDEIMINSIAVCAGSGGELLRGK---KADLYITG-------E-------MSHHDVLDATHRGTTVLLLEHS 171 (183)
Q Consensus 117 ~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfITG-------E-------vkhH~~l~A~e~Gi~lId~GHy 171 (183)
|+++++|+||+++-=.-...+++| |||++||= . .+......+.++|+++..+ |.
T Consensus 32 G~~~~~V~~I~~alD~t~~vi~eAi~~gadlIitHHP~~f~~~~~~~~~~~~~~~i~~li~~~I~lya~-Ht 102 (267)
T 2fyw_A 32 GTLDKGIQRVMVALDIREETVAEAIEKGVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLIKHDIAVYVS-HT 102 (267)
T ss_dssp SCSSSBCSEEEEESCCCHHHHHHHHHTTCSEEEESSCSCCSCCCCCCTTSHHHHHHHHHHHTTCEEEEC-SH
T ss_pred CCCcCccCEEEEEEcCCHHHHHHHHHCCCCEEEECCccccCCccccccCchHHHHHHHHHHCCCeEEEe-ec
Confidence 346778999999998888888887 89999862 1 1223356678899998765 53
No 8
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=50.94 E-value=20 Score=25.49 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=31.9
Q ss_pred eCCch---hhhhhCCCcEEEecCCChhHHHHHHHcCCeEEEeCC
Q psy18092 130 AGSGG---ELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEH 170 (183)
Q Consensus 130 sGSG~---s~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~GH 170 (183)
.|.|. .++.+.|+|++|+|.+....+....+.|+.++....
T Consensus 48 ~g~g~~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~~~ 91 (116)
T 1rdu_A 48 HGTGPKVVQSLVSKGVEYLIASNVGRNAFETLKAAGVKVYRFEG 91 (116)
T ss_dssp CCSSCSHHHHHHTTTCCEEECSSCCSSCHHHHHTTTCEEECCCS
T ss_pred CCccHHHHHHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEECCC
Confidence 45553 345556999999999999998888889999998543
No 9
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=50.61 E-value=15 Score=30.81 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=20.0
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEecCC
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITGEM 150 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITGEv 150 (183)
.|||++||+++++ +.+.|++|++++--
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~ 62 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRR 62 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4899999998743 33349999998743
No 10
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=49.34 E-value=18 Score=26.03 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=29.1
Q ss_pred hhhhhCCCcEEEecCCChhHHHHHHHcCCeEEEe
Q psy18092 135 ELLRGKKADLYITGEMSHHDVLDATHRGTTVLLL 168 (183)
Q Consensus 135 s~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~ 168 (183)
.++.+.|+|++|+|.+....+....+.|+.++..
T Consensus 57 ~~L~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~ 90 (121)
T 2yx6_A 57 NFIKDHGAKIVLTYGIGRRAIEYFNSLGISVVTG 90 (121)
T ss_dssp HHHHHTTCCEEECSBCCHHHHHHHHHTTCEEECS
T ss_pred HHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEEC
Confidence 3455569999999999999988888999999975
No 11
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=48.38 E-value=41 Score=24.15 Aligned_cols=36 Identities=6% Similarity=0.042 Sum_probs=29.6
Q ss_pred hhhhhCCCcEEEecCCChhHHHHHHHcCCeEEEeCC
Q psy18092 135 ELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEH 170 (183)
Q Consensus 135 s~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~GH 170 (183)
.++.+.|||++|+|.+....+....+.|+.++....
T Consensus 59 ~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~~~ 94 (124)
T 1eo1_A 59 QIIANNGVKAVIASSPGPNAFEVLNELGIKIYRATG 94 (124)
T ss_dssp HHHHHTTCCEEEECCSSHHHHHHHHHHTCEEEECCS
T ss_pred HHHHHCCCCEEEECCcCHHHHHHHHHCCCEEEEcCC
Confidence 345556999999999999998888889999998543
No 12
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=42.02 E-value=22 Score=25.49 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=29.1
Q ss_pred hhhhCCCcEEEecCCChhHHHHHHHcCCeEEEeCC
Q psy18092 136 LLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEH 170 (183)
Q Consensus 136 ~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~GH 170 (183)
++.+.|||++|+|.+....+....+.|+.++....
T Consensus 62 ~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~~~ 96 (120)
T 2wfb_A 62 VLAKSGAGVLLTGYVGPKAFQALQAAGIKVGQDLE 96 (120)
T ss_dssp HHHHHTEEEEECSCCCHHHHHHHHHTTCEEECCCT
T ss_pred HHHHCCCCEEEECCCCHhHHHHHHHCCCEEEEcCC
Confidence 34445999999999999998888899999998643
No 13
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=41.49 E-value=23 Score=29.29 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=25.5
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEecCCChhHH-HHHHHcCC
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITGEMSHHDV-LDATHRGT 163 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITGEvkhH~~-l~A~e~Gi 163 (183)
.|+|++||+++.+ +.+.|++|++++--...+. ....+.|-
T Consensus 9 GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~ 56 (247)
T 4hp8_A 9 GRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGG 56 (247)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTC
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCC
Confidence 5899999998743 3344999999975433332 23334444
No 14
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=40.45 E-value=56 Score=24.30 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=29.6
Q ss_pred hhhhhCCCcEEEecCCChhHHHHHHHcCCeEEEeC
Q psy18092 135 ELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLE 169 (183)
Q Consensus 135 s~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~G 169 (183)
.++.+.|||++|+|.+....+....+.|+.++...
T Consensus 70 ~~L~~~gv~vVI~g~IG~~a~~~L~~~GI~v~~~~ 104 (136)
T 1o13_A 70 NFVKEKGAELVIVRGIGRRAIAAFEAMGVKVIKGA 104 (136)
T ss_dssp HHHHHTTCSEEECSCCCHHHHHHHHHTTCEEECSC
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEecC
Confidence 45655699999999999999888889999999754
No 15
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=39.26 E-value=18 Score=29.88 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=18.2
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEec
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITG 148 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITG 148 (183)
.|+|++||+++.+ +.+.|++|++++
T Consensus 11 GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~ 42 (242)
T 4b79_A 11 GQQVLVTGGSSGIGAAIAMQFAELGAEVVALG 42 (242)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 5899999998743 334488887765
No 16
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=39.04 E-value=15 Score=30.37 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=18.9
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEec
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITG 148 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITG 148 (183)
.|+|++||+++.+ +.+.|+++++++
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~ 40 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILND 40 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 4899999998743 334499999885
No 17
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=38.65 E-value=17 Score=29.87 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=17.6
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEecC
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITGE 149 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITGE 149 (183)
.|+|++||+++.+ +.+.|++|++++-
T Consensus 11 GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r 43 (261)
T 4h15_A 11 GKRALITAGTKGAGAATVSLFLELGAQVLTTAR 43 (261)
T ss_dssp TCEEEESCCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeccCcHHHHHHHHHHHHcCCEEEEEEC
Confidence 4899999988742 3334777776653
No 18
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=38.12 E-value=30 Score=31.00 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=40.8
Q ss_pred CCCCCcccEEEEEeCCchhhhhhC---CCcEEEe-------------cCC-ChhHHHHHHHcCCeEEEeCCc
Q psy18092 117 DLDEIMINSIAVCAGSGGELLRGK---KADLYIT-------------GEM-SHHDVLDATHRGTTVLLLEHS 171 (183)
Q Consensus 117 ~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfIT-------------GEv-khH~~l~A~e~Gi~lId~GHy 171 (183)
|+++++|++|++|-=.-...+++| |||++|| ++- +......+.++|+++..+ |.
T Consensus 58 G~~~~~V~~Vl~alD~t~~Vv~eAi~~gadlIItHHPlif~~lk~i~~~~~~~r~i~~li~~~Iavya~-HT 128 (397)
T 2gx8_A 58 GALNKPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAA-HT 128 (397)
T ss_dssp SCSSSBCCEEEEESSCCHHHHHHHHHHTCCEEEESSCSCCSCCSCCCTTSHHHHHHHHHHHTTCEEEEC-CH
T ss_pred CCCccccCEEEEEEcCCHHHHHHHHHCCCCEEEECCccccCCccccCcCcHHHHHHHHHHHCCCeEEEe-ec
Confidence 456778999999999988889888 9999876 221 233466788899998765 53
No 19
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=37.37 E-value=28 Score=30.83 Aligned_cols=54 Identities=6% Similarity=0.096 Sum_probs=40.5
Q ss_pred CCCCCcccEEEEEeCCchhhhhhC---CCcEEEe-------------cCCChhHHHHHHHcCCeEEEeCCc
Q psy18092 117 DLDEIMINSIAVCAGSGGELLRGK---KADLYIT-------------GEMSHHDVLDATHRGTTVLLLEHS 171 (183)
Q Consensus 117 ~~~~~~I~rVAIcsGSG~s~i~~A---gaDvfIT-------------GEvkhH~~l~A~e~Gi~lId~GHy 171 (183)
|+++++|++|++|-=.-...+++| |||++|| ++-.......+.++|+++..+ |.
T Consensus 34 G~~~~~V~~Vl~alD~t~~Vv~eAi~~~adlIItHHPlif~~~k~i~~~~~~r~i~~li~~~Ialya~-HT 103 (370)
T 2nyd_A 34 GDEDVEVTGVLTALDCTLEVVNEAIEKGYNTIISHHPLIFKGVTSLKANGYGLIIRKLIQHDINLIAM-HT 103 (370)
T ss_dssp SCTTSBCCCEEEESSCCHHHHHHHHHHTCCEEEESSCSSCSCCSCCCSSTHHHHHHHHHHTTCEEEEC-CH
T ss_pred CCCcCccCEEEEEEcCCHHHHHHHHHCCCCEEEECCCcccCCccccCcCCHHHHHHHHHHCCCeEEEe-ec
Confidence 346778999999999989899888 9999976 221133456788899998765 53
No 20
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=35.60 E-value=36 Score=27.96 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCcccEEEEEeCCchhhhhhC---CCcEEEe-------cCC------ChhHHHHHHHcCCeEEEeCCc
Q psy18092 120 EIMINSIAVCAGSGGELLRGK---KADLYIT-------GEM------SHHDVLDATHRGTTVLLLEHS 171 (183)
Q Consensus 120 ~~~I~rVAIcsGSG~s~i~~A---gaDvfIT-------GEv------khH~~l~A~e~Gi~lId~GHy 171 (183)
+++|+||+++-=.-...+++| |||++|| +.. ++.....+.++|+++..+ |.
T Consensus 32 ~~~V~~I~~~lD~t~~vi~eAi~~~adlIitHHP~~f~~~~~~i~~~~~~~i~~li~~~I~ly~~-Ht 98 (247)
T 1nmo_A 32 KETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGW-HL 98 (247)
T ss_dssp CSBCCEEEEEEECCHHHHHHHHHTTCSEEEEEECSCCTTSCCCCCTHHHHHHHHHHHTTCEEEEC-CH
T ss_pred CCccCEEEEEEcCCHHHHHHHHhCCCCEEEECCchhccCCCccccchHHHHHHHHHHCCCEEEEe-ee
Confidence 568999999998888888887 8999876 211 223356678899998765 43
No 21
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=35.22 E-value=53 Score=26.87 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=17.2
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEec
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITG 148 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITG 148 (183)
+|++++||+++++ +.+.|+++++++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~ 33 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFID 33 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4788899887743 333488888774
No 22
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=35.21 E-value=23 Score=29.15 Aligned_cols=29 Identities=10% Similarity=0.247 Sum_probs=21.0
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEecCCCh
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITGEMSH 152 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITGEvkh 152 (183)
.|+|++||+++.+ +.+.|+++++++.-..
T Consensus 7 gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~ 42 (258)
T 4gkb_A 7 DKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAP 42 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcc
Confidence 4899999998743 3334899999886443
No 23
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=34.65 E-value=71 Score=23.71 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=28.0
Q ss_pred hhhhCCCcEEEecCCChhHHHHHHHcCCeEEEeCC
Q psy18092 136 LLRGKKADLYITGEMSHHDVLDATHRGTTVLLLEH 170 (183)
Q Consensus 136 ~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~GH 170 (183)
++.+.|||++|+|.+....+....+ |+.++...-
T Consensus 74 ~L~~~gv~~VI~g~iG~~a~~~L~~-GI~v~~~~~ 107 (136)
T 2re2_A 74 SALDHGANALVLSEIGSPGFNFIKN-KMDVYIVPE 107 (136)
T ss_dssp HHHHTTCSEEEESCCBHHHHHHHTT-TSEEEECCS
T ss_pred HHHHcCCCEEEECCCCHhHHHHHHC-CCEEEEcCC
Confidence 4555699999999999998877778 999998754
No 24
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=33.92 E-value=24 Score=29.05 Aligned_cols=25 Identities=12% Similarity=0.298 Sum_probs=17.9
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEec
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITG 148 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITG 148 (183)
.|+|++||+++.+ +.+.|+++++++
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~ 38 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVE 38 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEE
Confidence 4899999998743 233488888875
No 25
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=33.79 E-value=23 Score=28.27 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=17.3
Q ss_pred cEEEEEeCCch--h-------hhhhCCCcEEEecC
Q psy18092 124 NSIAVCAGSGG--E-------LLRGKKADLYITGE 149 (183)
Q Consensus 124 ~rVAIcsGSG~--s-------~i~~AgaDvfITGE 149 (183)
.|+|++||+++ + .+.+.|++|++++=
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r 40 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYR 40 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 47999999532 1 13344899998863
No 26
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=30.74 E-value=94 Score=24.94 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=29.9
Q ss_pred EEEE-EeCCchhh---hhhC-----CCc--EEEecCCChhHHHHHHHcCCeEEEeCC
Q psy18092 125 SIAV-CAGSGGEL---LRGK-----KAD--LYITGEMSHHDVLDATHRGTTVLLLEH 170 (183)
Q Consensus 125 rVAI-csGSG~s~---i~~A-----gaD--vfITGEvkhH~~l~A~e~Gi~lId~GH 170 (183)
|||| +||+|..+ ++.. +++ +++|-.-+--....|.+.|+.+....+
T Consensus 2 riaVl~SG~Gs~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~ 58 (209)
T 1meo_A 2 RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINH 58 (209)
T ss_dssp EEEEEESSSCTTHHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCG
T ss_pred eEEEEEECCchHHHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECc
Confidence 6777 68998743 3321 344 467765444455678999999987665
No 27
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=30.39 E-value=42 Score=27.49 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=37.4
Q ss_pred CcccEEEEEeCCchhhhhhC---CCcEEEecC------------CChhHHHHHHHcCCeEEEeCCc
Q psy18092 121 IMINSIAVCAGSGGELLRGK---KADLYITGE------------MSHHDVLDATHRGTTVLLLEHS 171 (183)
Q Consensus 121 ~~I~rVAIcsGSG~s~i~~A---gaDvfITGE------------vkhH~~l~A~e~Gi~lId~GHy 171 (183)
++|+||+++-=.-...+++| |||++||=- .+......+.++|+++..+ |.
T Consensus 34 ~~V~~I~~alD~t~~vi~eAi~~~adlIitHHp~~f~~~~~~~~~~~~~i~~li~~~I~ly~~-Ht 98 (242)
T 2yyb_A 34 RTVRKVGAAVDAGEAIFRKALEEEVDFLIVHHGLFWGKPFPIVGHHKRRLETLFQGGINLYAA-HL 98 (242)
T ss_dssp SBCCCEEEEEECSHHHHHHHHHTTCSEEEEEECSCSSCCCCSCHHHHHHHHHHHHTTCEEEEC-SH
T ss_pred cccCEEEEEEcCCHHHHHHHHHCCCCEEEECCCcCcCcccccccHHHHHHHHHHHCCCeEEEe-cc
Confidence 67999999998888888887 899988721 1223355677889998765 53
No 28
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=30.16 E-value=62 Score=25.69 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=17.7
Q ss_pred EEEEEeCCchhh-------hhhCCCcEEEecCCCh
Q psy18092 125 SIAVCAGSGGEL-------LRGKKADLYITGEMSH 152 (183)
Q Consensus 125 rVAIcsGSG~s~-------i~~AgaDvfITGEvkh 152 (183)
|+++++|+++.+ +.+.|+++++++--..
T Consensus 28 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~ 62 (260)
T 3gem_A 28 APILITGASQRVGLHCALRLLEHGHRVIISYRTEH 62 (260)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence 677888776532 2334888888765443
No 29
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=26.81 E-value=70 Score=25.18 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=17.6
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEecCCC
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITGEMS 151 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITGEvk 151 (183)
.|+++++|+++.+ +.+.|++++++++-.
T Consensus 8 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~ 42 (259)
T 3edm_A 8 NRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGA 42 (259)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3678888876632 223388888884433
No 30
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=26.48 E-value=23 Score=21.02 Aligned_cols=11 Identities=45% Similarity=1.232 Sum_probs=8.6
Q ss_pred eCCccccCCCC
Q psy18092 22 TRPRVCFPPGT 32 (183)
Q Consensus 22 t~~~~~f~~~~ 32 (183)
+-+|.||+.++
T Consensus 20 sippicfpdgr 30 (31)
T 2ab9_A 20 SIPPICFPDGR 30 (31)
T ss_dssp SSSCSSSSCCC
T ss_pred cCCCcccCCCC
Confidence 34899999875
No 31
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=26.10 E-value=1.1e+02 Score=22.94 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=27.2
Q ss_pred CCCcEEEecCCChhHHHHHHHcCCeEEEeC
Q psy18092 140 KKADLYITGEMSHHDVLDATHRGTTVLLLE 169 (183)
Q Consensus 140 AgaDvfITGEvkhH~~l~A~e~Gi~lId~G 169 (183)
.|||++|+|-+....+....+.|+.++...
T Consensus 66 ~g~~vvi~~~iG~~a~~~L~~~GI~v~~~~ 95 (145)
T 1p90_A 66 QDCQVLYVVSIGGPAAAKVVRAGIHPLKKP 95 (145)
T ss_dssp TTCSEEEESBCCHHHHHHHHHTTCEEEECT
T ss_pred CCCCEEEECCCCHHHHHHHHHcCCEEEEeC
Confidence 389999999999999988889999999874
No 32
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=21.92 E-value=40 Score=30.26 Aligned_cols=30 Identities=30% Similarity=0.153 Sum_probs=22.2
Q ss_pred CCcEEEecCCChh-----------HHHHHHHcCCeEEE-eCC
Q psy18092 141 KADLYITGEMSHH-----------DVLDATHRGTTVLL-LEH 170 (183)
Q Consensus 141 gaDvfITGEvkhH-----------~~l~A~e~Gi~lId-~GH 170 (183)
+||++||||-+-. .+..|.+.|+.+|. +|.
T Consensus 287 ~ADLVITGEG~~D~Qtl~GK~p~gVa~~A~~~~vPviaiaG~ 328 (383)
T 3cwc_A 287 DADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGS 328 (383)
T ss_dssp HCSEEEECCEESCC----CHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCEEEECCCCCcCcCCCCcHHHHHHHHHHHhCCCEEEEeCC
Confidence 5999999995442 36678888998876 444
No 33
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=21.81 E-value=1e+02 Score=24.30 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=16.8
Q ss_pred EEEEEeCCchhh-------hhhCCCcEEEecCCC
Q psy18092 125 SIAVCAGSGGEL-------LRGKKADLYITGEMS 151 (183)
Q Consensus 125 rVAIcsGSG~s~-------i~~AgaDvfITGEvk 151 (183)
|+++++|+++.+ +.+.|++++++.+-.
T Consensus 5 k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~ 38 (258)
T 3oid_A 5 KCALVTGSSRGVGKAAAIRLAENGYNIVINYARS 38 (258)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence 677888876532 233488888874333
No 34
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold, iron-molybdenum cofactor, ST genomics; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 2kla_A
Probab=21.81 E-value=2e+02 Score=19.75 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=28.8
Q ss_pred hhhhhCCCcEEEecCCChhHHHHHHHcCCeEEEeC
Q psy18092 135 ELLRGKKADLYITGEMSHHDVLDATHRGTTVLLLE 169 (183)
Q Consensus 135 s~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId~G 169 (183)
.++.+.|||++|+|.+....+....+. +.++...
T Consensus 50 ~~l~~~gv~~vi~~~iG~~a~~~L~~~-I~v~~~~ 83 (105)
T 2qtd_A 50 KSIVKENVNAIICKNISEENYKKFSKK-IEIYHAE 83 (105)
T ss_dssp HHHHHTCCSEEEESCCCHHHHHHHHTT-CEEEECC
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHhc-cEEEECC
Confidence 667667999999999999998888888 9988743
No 35
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=21.40 E-value=1.1e+02 Score=24.33 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=17.3
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEecCC
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITGEM 150 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITGEv 150 (183)
.|+++++|+++.+ +.+.|+++++++.-
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~ 64 (271)
T 3v2g_A 31 GKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVN 64 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3678888876632 22348888887543
No 36
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=21.06 E-value=54 Score=26.33 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=16.1
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEec
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITG 148 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITG 148 (183)
.|+++++|+++++ +.+.|+++++++
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~ 35 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGAKILLGA 35 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEE
Confidence 3678888876532 223488888775
No 37
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=20.97 E-value=63 Score=25.75 Aligned_cols=25 Identities=12% Similarity=0.306 Sum_probs=15.6
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEec
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITG 148 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITG 148 (183)
.|+++++|+++.+ +.+.|+++++++
T Consensus 16 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~ 47 (266)
T 3p19_A 16 KKLVVITGASSGIGEAIARRFSEEGHPLLLLA 47 (266)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 4788888876632 223377777654
No 38
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=20.86 E-value=62 Score=25.32 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=16.5
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEec
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITG 148 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITG 148 (183)
.|+++++|+++.+ +.+.|+++++++
T Consensus 12 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~ 43 (252)
T 3f1l_A 12 DRIILVTGASDGIGREAAMTYARYGATVILLG 43 (252)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 4788888876632 223488888775
No 39
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=20.84 E-value=61 Score=25.50 Aligned_cols=25 Identities=8% Similarity=0.248 Sum_probs=15.2
Q ss_pred EEEEEeCCchhh-------hhhCCCcEEEecC
Q psy18092 125 SIAVCAGSGGEL-------LRGKKADLYITGE 149 (183)
Q Consensus 125 rVAIcsGSG~s~-------i~~AgaDvfITGE 149 (183)
|+++++|+++++ +.+.|+++++++-
T Consensus 8 k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r 39 (252)
T 3h7a_A 8 ATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRR 39 (252)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 677777776532 2233777777653
No 40
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=20.80 E-value=53 Score=27.71 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=9.2
Q ss_pred hhhhhCCCcEEEecC
Q psy18092 135 ELLRGKKADLYITGE 149 (183)
Q Consensus 135 s~i~~AgaDvfITGE 149 (183)
.+++++|++-.|-|=
T Consensus 83 ~mL~d~G~~~ViiGH 97 (256)
T 1aw2_A 83 AMLKEFGATHIIIGH 97 (256)
T ss_dssp HHHHHHTCCEEEESC
T ss_pred HHHHHcCCCEEEECc
Confidence 456666666666663
No 41
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=20.77 E-value=61 Score=25.56 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=17.0
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEecC
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITGE 149 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITGE 149 (183)
.|+++++|+++.+ +.+.|+.+++++-
T Consensus 8 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r 40 (265)
T 3lf2_A 8 EAVAVVTGGSSGIGLATVELLLEAGAAVAFCAR 40 (265)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 4678888876632 2233888888753
No 42
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=20.76 E-value=54 Score=27.67 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=8.1
Q ss_pred hhhhhCCCcEEEec
Q psy18092 135 ELLRGKKADLYITG 148 (183)
Q Consensus 135 s~i~~AgaDvfITG 148 (183)
.+++++||+..|-|
T Consensus 80 ~mL~d~G~~~ViiG 93 (252)
T 2btm_A 80 VMLKDLGVTYVILG 93 (252)
T ss_dssp HHHHHHTCCEEEES
T ss_pred HHHHHcCCCEEEeC
Confidence 35555566666665
No 43
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Probab=20.72 E-value=54 Score=27.71 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=9.4
Q ss_pred hhhhhCCCcEEEecC
Q psy18092 135 ELLRGKKADLYITGE 149 (183)
Q Consensus 135 s~i~~AgaDvfITGE 149 (183)
.+++++||+..|-|=
T Consensus 81 ~mL~d~G~~~ViiGH 95 (255)
T 1tre_A 81 AMLKDIGAQYIIIGH 95 (255)
T ss_dssp HHHHHHTCCEEEESC
T ss_pred HHHHHcCCCEEEECc
Confidence 456666777777663
No 44
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=20.69 E-value=62 Score=25.31 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=15.9
Q ss_pred CcccEEEEEeCCchhh-------hhhCCCcEEEec
Q psy18092 121 IMINSIAVCAGSGGEL-------LRGKKADLYITG 148 (183)
Q Consensus 121 ~~I~rVAIcsGSG~s~-------i~~AgaDvfITG 148 (183)
+...|+++++|+++.+ +.+.|+++++++
T Consensus 19 ~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~ 53 (251)
T 3orf_A 19 SHMSKNILVLGGSGALGAEVVKFFKSKSWNTISID 53 (251)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3455777887776532 223378887765
No 45
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=20.38 E-value=94 Score=24.73 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=16.9
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEecC
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITGE 149 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITGE 149 (183)
.|+++++|+++.+ +.+.|++++++..
T Consensus 27 ~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~ 59 (267)
T 3u5t_A 27 NKVAIVTGASRGIGAAIAARLASDGFTVVINYA 59 (267)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 4688888887632 2233888888743
No 46
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=20.33 E-value=63 Score=25.84 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=16.3
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEecC
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITGE 149 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITGE 149 (183)
.|+++++|+++.+ +.+.|+++++++-
T Consensus 24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r 56 (279)
T 3sju_A 24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCAR 56 (279)
T ss_dssp -CEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4688888876632 2233888887764
No 47
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=20.28 E-value=64 Score=25.68 Aligned_cols=27 Identities=15% Similarity=0.307 Sum_probs=17.5
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEecCC
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITGEM 150 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITGEv 150 (183)
.|+++++|+++.+ +.+.|+++++++--
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~ 60 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRS 60 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4788888887632 22337888877543
No 48
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=20.24 E-value=66 Score=25.79 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=17.3
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEecC
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITGE 149 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITGE 149 (183)
.|+++++|+++++ +.+.|+++++++-
T Consensus 25 ~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r 57 (281)
T 3v2h_A 25 TKTAVITGSTSGIGLAIARTLAKAGANIVLNGF 57 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4678888876632 2334888888764
No 49
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=20.21 E-value=58 Score=25.54 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=15.4
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEec
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITG 148 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITG 148 (183)
.|+++++|+++++ +.+.|+.+++++
T Consensus 12 ~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~ 43 (311)
T 3o26_A 12 RRCAVVTGGNKGIGFEICKQLSSNGIMVVLTC 43 (311)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEecCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4678888876532 222377777765
No 50
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=20.12 E-value=1.1e+02 Score=24.02 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=17.8
Q ss_pred cEEEEEeCCchhh-------hhhCCCcEEEecCC
Q psy18092 124 NSIAVCAGSGGEL-------LRGKKADLYITGEM 150 (183)
Q Consensus 124 ~rVAIcsGSG~s~-------i~~AgaDvfITGEv 150 (183)
.|+++++|+++.+ +.+.|++++++..-
T Consensus 18 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~ 51 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYAN 51 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4788888887632 23348888886543
No 51
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=20.08 E-value=1.4e+02 Score=24.52 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=27.2
Q ss_pred cEEEEEeCCch-h-----hhhhCCCcEEEecCCChhHHHHHHHcCCeEEE
Q psy18092 124 NSIAVCAGSGG-E-----LLRGKKADLYITGEMSHHDVLDATHRGTTVLL 167 (183)
Q Consensus 124 ~rVAIcsGSG~-s-----~i~~AgaDvfITGEvkhH~~l~A~e~Gi~lId 167 (183)
++|.|.+|+|+ + +.+..|+.++.| .+-.....+.+.|...||
T Consensus 152 ~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~--~~~~~~~~~~~lGa~~i~ 199 (343)
T 3gaz_A 152 QTVLIQGGGGGVGHVAIQIALARGARVFAT--ARGSDLEYVRDLGATPID 199 (343)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE--ECHHHHHHHHHHTSEEEE
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEE--eCHHHHHHHHHcCCCEec
Confidence 57887776665 2 223338999998 334445567778887766
Done!