RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18092
         (183 letters)



>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus
           cereus [TaxId: 1396]}
          Length = 370

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 87  KLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSIAVCAGSGGELL---RGKKAD 143
            L        F   +    +     ++   D     +  +AV  G G + +   + K AD
Sbjct: 247 YLQEEMTLGQFAEHVKQSLDVKGARVVGKLD---DKVRKVAVLGGDGNKYINQAKFKGAD 303

Query: 144 LYITGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQFF 181
           +Y+TG+M +H   DA   G  ++   H+  E+   Q  
Sbjct: 304 VYVTGDMYYHVAHDAMMLGLNIVDPGHN-VEKVMKQGV 340


>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli
           [TaxId: 562]}
          Length = 247

 Score = 66.6 bits (162), Expect = 3e-14
 Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 6/137 (4%)

Query: 46  LSSFSLRFRDDKTARDTVSRVVTRLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVA 105
           ++ +      D       +  +  L  +  +    P +   +L     G      I    
Sbjct: 91  INLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARL 150

Query: 106 NTSTHVLIKDSDLDEIMINSIAVCAGSGGELL---RGKKADLYITGEMSHHDVLDATHRG 162
                           ++  +A C G G   +        D +ITGE+S   +  A  +G
Sbjct: 151 GRKPLWCGDT---GPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQG 207

Query: 163 TTVLLLEHSDSERPFLQ 179
                  H  +ER  ++
Sbjct: 208 LHFYAAGHHATERGGIR 224


>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 265

 Score = 57.8 bits (139), Expect = 5e-11
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 107 TSTHVLIKDSDLDEIMINSIAVCAGSGGELLR---GKKADLYITGEMSHHDVLDATHRGT 163
            S  ++    D  +  I+ +A+C GSG    +    K AD+YITG++ +H   D    G 
Sbjct: 159 DSLRMVHYQEDDLQKPISRVAICGGSGQSFYKDALAKGADVYITGDIYYHTAQDMLSDGL 218

Query: 164 TVLLLEHSDSERPFLQ 179
             L   H   E  F++
Sbjct: 219 LALDPGHY-IEVIFVE 233


>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum
           pernix [TaxId: 56636]}
          Length = 70

 Score = 27.9 bits (62), Expect = 0.19
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 69  RLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIMINSI 126
           +L+ ++  PG      ++ L+       FG S+      S   + K   + E     I
Sbjct: 11  QLYILQSFPGIGRRTAERILE------RFG-SLERFFTASKAEISKVEGIGEKRAEEI 61


>d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable
           4-imidazolone-5-propanoate amidohydrolase GOS_1928421
           {Environmental samples}
          Length = 103

 Score = 27.0 bits (60), Expect = 0.60
 Identities = 10/52 (19%), Positives = 14/52 (26%)

Query: 104 VANTSTHVLIKDSDLDEIMINSIAVCAGSGGELLRGKKADLYITGEMSHHDV 155
           V     H L+   DL            G    L  G  AD  +       ++
Sbjct: 31  VHEGRIHALVPMQDLKGPYPAHWQDMKGKLVTLRVGMLADFLVWNCGHPAEL 82


>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 392

 Score = 27.2 bits (60), Expect = 1.1
 Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 2/58 (3%)

Query: 65  RVVTRLFAMEKIPGSNPTINKKKLDSYFDGKHFGVSIHTVANTSTHVLIKDSDLDEIM 122
           R   R F+ EK         K   DS     +  V   T        +  +  ++ + 
Sbjct: 287 RNNPRFFSNEKFI--KGYFYKLSEDSVILATYNQVYEGTHQPIKVRKVYGELPVEVLC 342


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 673,728
Number of extensions: 29767
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 8
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)