BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18093
(411 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NK57|NIF3L_DROME NIF3-like protein 1 OS=Drosophila melanogaster GN=anon-35F/36A PE=2
SV=3
Length = 292
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 98/231 (42%), Gaps = 67/231 (29%)
Query: 180 FAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVP--SKPEKFNSMIAISHKINETDVVQ 237
A+YSPHT WD GG+NDWL+ NI PL P P S I K+ + VV+
Sbjct: 104 IALYSPHTAWDKKSGGVNDWLSKAVNIISIRPLEPELGAPPGTGSGRYIETKMELSQVVE 163
Query: 238 HLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGG 297
L + I+ S+ GH K +I S+ +CAGSG
Sbjct: 164 SL----------------------QKRIRNSVHVALAVGHTPK---TLIQSVGICAGSGA 198
Query: 298 ELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLD 357
LL+G +ADL IT GEMSHH+VL+
Sbjct: 199 SLLKGIQADLIIT-------------------------------------GEMSHHEVLE 221
Query: 358 ATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPI 408
TH TTVLL HS+SER FL H I + ++VS+ DKDP+
Sbjct: 222 FTHNNTTVLLCNHSNSERGFL---HEFCPILAKSLNEECLVFVSEVDKDPL 269
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 37/53 (69%)
Query: 85 VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVP 137
+T WKERVV+ CLA++IA+YSPHT WD GG+NDWL+ NI PL P
Sbjct: 86 ITQSHWKERVVAACLANDIALYSPHTAWDKKSGGVNDWLSKAVNIISIRPLEP 138
>sp|Q9EQ80|NIF3L_MOUSE NIF3-like protein 1 OS=Mus musculus GN=Nif3l1 PE=1 SV=4
Length = 376
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 146/342 (42%), Gaps = 82/342 (23%)
Query: 85 VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFN 144
+T WKE +V L + +AVYSPHT +DA G+N WLA P+ PS+ +
Sbjct: 102 ITWKTWKECLVIRALENRVAVYSPHTAYDAAPQGVNSWLAKGLGTCTTRPIHPSRAPDYP 161
Query: 145 SMIAISHKIFRLLLRPLFNNNLNLEKNETSIK---------FPFFAVYSPHT--TWDAIQ 193
+ A H+ L N + +L+K ++++ FP T + + Q
Sbjct: 162 TEGA--HR-----LEFSVNRSQDLDKVMSTLRGVGGVSVTSFPARCDGEEQTRISLNCTQ 214
Query: 194 GGINDWLASIYNISEYYP----LVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGP 249
+ LA + + Y L KP ++ + ++E+ +A
Sbjct: 215 KTLMQVLAFLSQDRQLYQKTEILSLEKPLLLHTGMGRLCTLDES---------VSLAIMI 265
Query: 250 QQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRGKKADLYI 309
++ K + L + R + + + E + +A+CAGSGG +L+G +ADLY+
Sbjct: 266 ERIKTHLKLSHLRLALG-----------VGRTLESQVKVVALCAGSGGSVLQGVEADLYL 314
Query: 310 TDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLE 369
T GEMSHHDVLDA +G V+L E
Sbjct: 315 T-------------------------------------GEMSHHDVLDAASKGINVILCE 337
Query: 370 HSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV 411
HS++ER FL + +L + H+ + + I +S+ D+DP+ V
Sbjct: 338 HSNTERGFLSELQEMLGV---HFENKINIILSETDRDPLRVV 376
>sp|Q05B89|NIF3L_BOVIN NIF3-like protein 1 OS=Bos taurus GN=NIF3L1 PE=2 SV=1
Length = 377
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 129/336 (38%), Gaps = 122/336 (36%)
Query: 140 PEKFNSMIAISHKIF--RLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGIN 197
P F M I+ K + RL++R L N +YSPHT +DA G+N
Sbjct: 94 PPIFRPMKRITWKTWKERLVIRALENR---------------VGIYSPHTAYDAAPQGVN 138
Query: 198 DWLASIYNISEYYPLVPSKPEKFNSM------IAISHKINETDVVQHLTHIAEVAFGP-- 249
+WLA + P+ PSK + + +++H + V+ L IA V+
Sbjct: 139 NWLAKGLGVCTSRPIHPSKAPDYPTEGTHRVEFSVTHTQDPDKVISALKEIAGVSVTSFS 198
Query: 250 ----------------QQAKESVTLF---NPRYEIKASLISHDIP-------GHL----- 278
QQA V F N ++ K ++S + P G L
Sbjct: 199 ARTDDEEQTRLSLNCTQQALMQVVAFLSQNRQFYQKTEILSLEKPLLLYTGMGRLCTLDE 258
Query: 279 SKENEIMINSI--------------------------AVCAGSGGELLRGKKADLYITDA 312
S E MI I A+CAGSG +L+G ADLY+T
Sbjct: 259 SVSLETMIERIKSHLKLSHVRLALGIGKTLESPVKVVALCAGSGSSVLQGTDADLYLT-- 316
Query: 313 THRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSD 372
GEMSHHDVLDA +G +V+L EHS+
Sbjct: 317 -----------------------------------GEMSHHDVLDAASQGISVILCEHSN 341
Query: 373 SERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPI 408
+ER FL + +L H + + I +S+ D+DP+
Sbjct: 342 TERGFLSDLRDMLDA---HLENKINIILSETDRDPL 374
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 85 VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKF 143
+T WKER+V L + + +YSPHT +DA G+N+WLA + P+ PSK +
Sbjct: 103 ITWKTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGVCTSRPIHPSKAPDY 161
>sp|Q4V7D6|NIF3L_RAT NIF3-like protein 1 OS=Rattus norvegicus GN=Nif3l1 PE=2 SV=1
Length = 376
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 124/304 (40%), Gaps = 52/304 (17%)
Query: 140 PEKFNSMIAISHKIF--RLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGIN 197
P F M I+ K + RL++R L N A+YSPHT +DA G+N
Sbjct: 93 PPIFRPMKHITWKTWKERLVIRALENR---------------VAIYSPHTAYDAAPQGVN 137
Query: 198 DWLASIYNISEYYPLVPSKPEKFNS------MIAISHKINETDVVQHLTHIAEVAF---- 247
WLA P+ PSK + + + +H + V+ + + V+
Sbjct: 138 SWLAKGLGTCTTRPIHPSKAPNYPTEGTHRLEFSANHSQDLDKVMSAVKGVGGVSVTSFP 197
Query: 248 ----GPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRGK 303
G +Q + S+ + +S D L ++ EI+ + +G L
Sbjct: 198 ARCDGEEQTRVSLNCTQKALMQVLAFLSQD--RQLYQKTEILSLEKPLLLHTGMGRLCTL 255
Query: 304 KADLYITDATHRGTTVLLLEHSDSELHIHHVLH--VYHILILG--------------FVT 347
+ + R L L H L + L V + + ++T
Sbjct: 256 DESVSLATMIERIKRHLKLPHLRLALGVGRTLESPVKVVALCAGSGGSVLQGVEADLYLT 315
Query: 348 GEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDP 407
GEMSHHDVLDA +G V+L EHS++ER FL + +L + H + + I +S+ D+DP
Sbjct: 316 GEMSHHDVLDAASKGINVILCEHSNTERGFLSDLQEMLGV---HLENKINIILSETDRDP 372
Query: 408 IGYV 411
+ V
Sbjct: 373 LRVV 376
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 85 VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKF 143
+T WKER+V L + +A+YSPHT +DA G+N WLA P+ PSK +
Sbjct: 102 ITWKTWKERLVIRALENRVAIYSPHTAYDAAPQGVNSWLAKGLGTCTTRPIHPSKAPNY 160
>sp|P53081|NIF3_YEAST NGG1-interacting factor 3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NIF3 PE=1 SV=1
Length = 288
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 107/251 (42%), Gaps = 75/251 (29%)
Query: 170 KNETSIKFPFF--AVYSPHTTWDAIQGGINDWLA----SIYNISEYYPLVPSKPEK---- 219
++ET+IK + +VY PHT DA +GG+NDWL + N+++ Y L E
Sbjct: 98 QHETAIKLIQYGISVYCPHTAVDAARGGVNDWLVRGLNNGENVAKSYALETVSGETDDLI 157
Query: 220 -FNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHL 278
+ + + I+ +V+++ + V + + +L P
Sbjct: 158 GYGRFVEFNKDISLEQIVKNVKRVLRVPY-----VQVASLAAP----------------- 195
Query: 279 SKENEIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVY 338
S N++ I +AVCAGSG + + K D+ +
Sbjct: 196 SAWNQLKIKKVAVCAGSGSGVFKQLKEDVDL----------------------------- 226
Query: 339 HILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQ-TMHTLLQIRLWHYLDWLK 397
+ TGEMSHH+VL G TV++ HS++ER FLQ M LLQ + +
Sbjct: 227 ------YYTGEMSHHEVLKWKEMGKTVIVCNHSNTERGFLQDVMKGLLQD------EGHE 274
Query: 398 IYVSKADKDPI 408
+ VSK D DP+
Sbjct: 275 VVVSKMDCDPL 285
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 99 LAHNIAVYSPHTTWDAIQGGINDWLASIYNISE 131
+ + I+VY PHT DA +GG+NDWL N E
Sbjct: 106 IQYGISVYCPHTAVDAARGGVNDWLVRGLNNGE 138
>sp|Q9GZT8|NIF3L_HUMAN NIF3-like protein 1 OS=Homo sapiens GN=NIF3L1 PE=1 SV=2
Length = 377
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 40/129 (31%)
Query: 283 EIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILI 342
E + +A+CAGSG +L+G +ADLY+T
Sbjct: 289 ESQVKVVALCAGSGSSVLQGVEADLYLT-------------------------------- 316
Query: 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSK 402
GEMSHHD LDA +G V+L EHS++ER FL + +L H + + I +S+
Sbjct: 317 -----GEMSHHDTLDAASQGINVILCEHSNTERGFLSDLRDMLD---SHLENKINIILSE 368
Query: 403 ADKDPIGYV 411
D+DP+ V
Sbjct: 369 TDRDPLQVV 377
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 82/222 (36%), Gaps = 74/222 (33%)
Query: 181 AVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSK----PEKFNSMIAISHKINE---- 232
+YSPHT +DA G+N+WLA P+ PSK P + N + + +
Sbjct: 122 GIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLDK 181
Query: 233 -TDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKA------------------------ 267
V+ + ++ +F + E T N KA
Sbjct: 182 VMSAVKGIDGVSVTSFSARTGNEEQTRINLNCTQKALMQVVDFLSRNKQLYQKTEILSLE 241
Query: 268 -SLISHDIPGHLSKENE-----IMINSI--------------------------AVCAGS 295
L+ H G L +E MI+ I A+CAGS
Sbjct: 242 KPLLLHTGMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGS 301
Query: 296 GGELLRGKKADLYIT---------DATHRGTTVLLLEHSDSE 328
G +L+G +ADLY+T DA +G V+L EHS++E
Sbjct: 302 GSSVLQGVEADLYLTGEMSHHDTLDAASQGINVILCEHSNTE 343
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 85 VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKF 143
+T + WKER+V L + + +YSPHT +DA G+N+WLA P+ PSK +
Sbjct: 103 ITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNY 161
>sp|Q55E83|NIF3_DICDI Protein NIF3 homolog OS=Dictyostelium discoideum GN=nif3 PE=2 SV=1
Length = 354
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 137/326 (42%), Gaps = 69/326 (21%)
Query: 92 ERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIY-----NISEYYPLVPSKPEKFNSM 146
+R+ + + I +YSPH+ D+ GG+NDW+++ P+ P + E S
Sbjct: 92 QRIAIKSIENRIPIYSPHSALDSCDGGLNDWISNALIKLNSGKGRSKPITPYQ-ESLKST 150
Query: 147 IAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNI 206
IS I+ +PL L ++ E + F F++ + D Q L + N+
Sbjct: 151 QKIS--IYLHTNQPLTAEIL--KQLELNSNFQFYSTDKIELSCDQQQ------LLILINL 200
Query: 207 SEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIK 266
+ + + N +S +V ++ + KE LFN Y
Sbjct: 201 IKSFSNEIKNWDIINQEKVLSLNNGSGKLVTLDDDGIDIDVIVKGVKE---LFNIEY--- 254
Query: 267 ASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSD 326
I + G K I +I++CAGSGG ++ KADLY+T
Sbjct: 255 -VRIGRPLSGESKK-----IKTISLCAGSGGSVVFNAKADLYLT---------------- 292
Query: 327 SELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFL-QTMHTLL 385
GE++HH +LDA +G+ V++ +HS+SER +L Q + L
Sbjct: 293 ---------------------GELTHHAILDACAKGSYVIVCDHSNSERDYLPQILKPNL 331
Query: 386 QIRLWHYLDWLKIYVSKADKDPIGYV 411
+ +L++ +K+ VSK D DP+ +
Sbjct: 332 E-KLFN--GRIKVIVSKLDTDPLKVI 354
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 160 PLFNNNLNLEKNETSIKFPF------FAVYSPHTTWDAIQGGINDWLAS 202
PLFN + + S + +YSPH+ D+ GG+NDW+++
Sbjct: 77 PLFNQFKTVNQKSISQRIAIKSIENRIPIYSPHSALDSCDGGLNDWISN 125
>sp|O94404|NIF3_SCHPO Protein NIF3 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPCC126.12 PE=3 SV=1
Length = 278
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 97/230 (42%), Gaps = 59/230 (25%)
Query: 182 VYSPHTTWDAIQGGINDWLASIYNISEYYPLVPS-KPEKFNSMIAISHKINETDVVQHLT 240
VYSPHT DA G+NDWLA I+ + S P + NS++A + ++ T
Sbjct: 102 VYSPHTAVDAAVDGVNDWLAQ--GIAGGRNNIKSVVPTQQNSVMAEAEGYGRICELKIPT 159
Query: 241 HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELL 300
+ E+ Q+AKE L + L SH I+ +++CAGSGG ++
Sbjct: 160 TLRELV---QRAKELTGLQYVQVCAPNGLDSH-------------ISKVSLCAGSGGSVV 203
Query: 301 RGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATH 360
ADLY T GE+SHH VL A
Sbjct: 204 MNTDADLYFT-------------------------------------GELSHHQVLAAMA 226
Query: 361 RGTTVLLLEHSDSERPFLQTMHTLLQIRLWHY--LDWLKIYVSKADKDPI 408
+G +V+L HS++ER +L+ + +H +D + VS D DP+
Sbjct: 227 KGISVILCGHSNTERGYLKDVMCQKLASSFHKEGVDA-NVIVSSMDADPL 275
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 84 GVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLA 124
+T + ++R + A I VYSPHT DA G+NDWLA
Sbjct: 81 AITMEDPQQRSLLKLAAEGIHVYSPHTAVDAAVDGVNDWLA 121
>sp|P54472|YQFO_BACSU UPF0135 protein YqfO OS=Bacillus subtilis (strain 168) GN=yqfO PE=3
SV=2
Length = 373
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%)
Query: 85 VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFN 144
++ D+ R++ CL H+IAVY+ HT D GG+ND LA +SE L P+ +
Sbjct: 79 ISTDQPAGRLIEKCLKHDIAVYAAHTNLDVADGGVNDLLAEALELSETEVLAPTYTDPLK 138
Query: 145 SMIAISHKIFRLLLRPLFNN 164
+ K + +R N
Sbjct: 139 KLAVYVPKEYEEQVRAALGN 158
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 180 FAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPS 215
AVY+ HT D GG+ND LA +SE L P+
Sbjct: 97 IAVYAAHTNLDVADGGVNDLLAEALELSETEVLAPT 132
>sp|Q8XIV9|Y2004_CLOPE UPF0135 protein CPE2004 OS=Clostridium perfringens (strain 13 /
Type A) GN=CPE2004 PE=3 SV=1
Length = 262
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 109/280 (38%), Gaps = 81/280 (28%)
Query: 132 YYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDA 191
++PL+ KP + + KI L+ N++NL YS HT WD+
Sbjct: 64 HHPLLFRKPSTITTDTLLGRKIISLI-----KNDINL--------------YSAHTNWDS 104
Query: 192 IQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQ 251
++GG+ND L I ++ + S + + + E V++ + I
Sbjct: 105 VKGGLNDTLVEILGFNKGIIMDKSPVDSEAGIGRVVELTKEMTVLEIINLI--------- 155
Query: 252 AKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRGKKADLYITD 311
K S+ + N RY G L NE+ I IA+ GSG + + D
Sbjct: 156 -KSSLGVKNLRY-----------AGDL---NEV-IKKIAIVNGSGQD---------FFGD 190
Query: 312 ATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHS 371
A G ++ +TG+ ++H V D G +L + H
Sbjct: 191 AKKLGADLI-------------------------ITGDTTYHFVSDYKEMGLNILDIGHF 225
Query: 372 DSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV 411
+SE P L + ++ RL ++++ VSK KDP ++
Sbjct: 226 NSEWPVLIKVSEKVKERLDSDVEFI---VSKEAKDPFEFI 262
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 85 VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISE 131
+T D R + + + ++I +YS HT WD+++GG+ND L I ++
Sbjct: 75 ITTDTLLGRKIISLIKNDINLYSAHTNWDSVKGGLNDTLVEILGFNK 121
>sp|P67276|Y988_STRP8 UPF0135 protein spyM18_0988 OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=spyM18_0988 PE=3 SV=1
Length = 262
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 33/136 (24%)
Query: 180 FAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHL 239
+VY HT D + GG+NDW + I E L +K E F
Sbjct: 92 ISVYVSHTNIDIVPGGLNDWFCDLLEIKEATYLSETK-EGFG------------------ 132
Query: 240 THIAEVAFGPQQAKESVTLFNPR-YEIK-ASLISHDIPGHLSKENEIMINSIAVCAGSGG 297
I + +QA E + R +++ LI +D KEN +I+ IA+C GSGG
Sbjct: 133 --IGRIGTVKEQALEELASKVKRVFDLDTVRLIRYD------KENP-LISKIAICGGSGG 183
Query: 298 ELLRG---KKADLYIT 310
E + K AD+YIT
Sbjct: 184 EFYQDAVQKGADVYIT 199
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 99 LAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSK 139
+ H+I+VY HT D + GG+NDW + I E L +K
Sbjct: 88 VKHDISVYVSHTNIDIVPGGLNDWFCDLLEIKEATYLSETK 128
>sp|P67274|Y931_STRP1 UPF0135 protein SPy_0931/M5005_Spy0732 OS=Streptococcus pyogenes
serotype M1 GN=SPy_0931 PE=3 SV=1
Length = 262
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 33/136 (24%)
Query: 180 FAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHL 239
+VY HT D + GG+NDW + I E L +K E F
Sbjct: 92 ISVYVSHTNIDIVPGGLNDWFCDLLEIKEATYLSETK-EGFG------------------ 132
Query: 240 THIAEVAFGPQQAKESVTLFNPR-YEIK-ASLISHDIPGHLSKENEIMINSIAVCAGSGG 297
I + +QA E + R +++ LI +D KEN +I+ IA+C GSGG
Sbjct: 133 --IGRIGTVKEQALEELASKVKRVFDLDTVRLIRYD------KENP-LISKIAICGGSGG 183
Query: 298 ELLRG---KKADLYIT 310
E + K AD+YIT
Sbjct: 184 EFYQDAVQKGADVYIT 199
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 99 LAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSK 139
+ H+I+VY HT D + GG+NDW + I E L +K
Sbjct: 88 VKHDISVYVSHTNIDIVPGGLNDWFCDLLEIKEATYLSETK 128
>sp|P0DG85|Y644_STRPQ UPF0135 protein SPs1208 OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=SPs1208 PE=3 SV=1
Length = 262
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 33/136 (24%)
Query: 180 FAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHL 239
+VY HT D + GG+NDW + I E L +K E F
Sbjct: 92 ISVYVSHTNIDIVPGGLNDWFCDLLEIKEATYLSETK-EGFG------------------ 132
Query: 240 THIAEVAFGPQQAKESVTLFNPR-YEIK-ASLISHDIPGHLSKENEIMINSIAVCAGSGG 297
I + +QA E + R +++ LI +D KEN +I+ IA+C GSGG
Sbjct: 133 --IGRIGTVKEQALEELASKVKRVFDLDTVRLIRYD------KENP-LISKIAICGGSGG 183
Query: 298 ELLRG---KKADLYIT 310
E + K AD+YIT
Sbjct: 184 EFYQDAVQKGADVYIT 199
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 99 LAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSK 139
+ H+I+VY HT D + GG+NDW + I E L +K
Sbjct: 88 VKHDISVYVSHTNIDIVPGGLNDWFCDLLEIKEATYLSETK 128
>sp|P0DG84|Y644_STRP3 UPF0135 protein SpyM3_0644 OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=SpyM3_0644 PE=3 SV=1
Length = 262
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 33/136 (24%)
Query: 180 FAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHL 239
+VY HT D + GG+NDW + I E L +K E F
Sbjct: 92 ISVYVSHTNIDIVPGGLNDWFCDLLEIKEATYLSETK-EGFG------------------ 132
Query: 240 THIAEVAFGPQQAKESVTLFNPR-YEIK-ASLISHDIPGHLSKENEIMINSIAVCAGSGG 297
I + +QA E + R +++ LI +D KEN +I+ IA+C GSGG
Sbjct: 133 --IGRIGTVKEQALEELASKVKRVFDLDTVRLIRYD------KENP-LISKIAICGGSGG 183
Query: 298 ELLRG---KKADLYIT 310
E + K AD+YIT
Sbjct: 184 EFYQDAVQKGADVYIT 199
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 99 LAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSK 139
+ H+I+VY HT D + GG+NDW + I E L +K
Sbjct: 88 VKHDISVYVSHTNIDIVPGGLNDWFCDLLEIKEATYLSETK 128
>sp|Q5XCH0|Y758_STRP6 UPF0135 protein M6_Spy0758 OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=M6_Spy0758 PE=3
SV=2
Length = 262
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 33/136 (24%)
Query: 180 FAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHL 239
+VY HT D + GG+NDW + I E L +K E F
Sbjct: 92 ISVYVSHTNIDIVPGGLNDWFCDLLEIKEATYLSETK-EGFG------------------ 132
Query: 240 THIAEVAFGPQQAKESVTLFNPR-YEIK-ASLISHDIPGHLSKENEIMINSIAVCAGSGG 297
I + +QA E + R +++ LI +D KEN +I+ IA+C GSGG
Sbjct: 133 --IGRIGTVKEQALEELASKVKRVFDLDTVRLIRYD------KENP-LISKIAICGGSGG 183
Query: 298 ELLRG---KKADLYIT 310
E + K AD+YIT
Sbjct: 184 EFYQDAVQKGADVYIT 199
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 99 LAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSK 139
+ H+I+VY HT D + GG+NDW + I E L +K
Sbjct: 88 VKHDISVYVSHTNIDIVPGGLNDWFCDLLEIKEATYLSETK 128
>sp|Q5HNY9|Y1125_STAEQ UPF0135 protein SERP1125 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=SERP1125 PE=3 SV=1
Length = 366
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 345 FVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKAD 404
FVTG++ HHD LDA + +L + H SE + + LL+ L+ Y + IY S+ +
Sbjct: 301 FVTGDIKHHDALDAKIQNVNLLDINHY-SEYVMKEGLKELLEKWLFKYENQFPIYASEIN 359
Query: 405 KDPIGY 410
DP Y
Sbjct: 360 TDPFKY 365
>sp|Q8CSD9|Y1246_STAES UPF0135 protein SE_1246 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=SE_1246 PE=3 SV=1
Length = 366
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 345 FVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKAD 404
FVTG++ HHD LDA + +L + H SE + + LL+ L+ Y + IY S+ +
Sbjct: 301 FVTGDIKHHDALDAKIQNVNLLDINHY-SEYVMKEGLKELLEKWLFKYENQFPIYASEIN 359
Query: 405 KDPIGY 410
DP Y
Sbjct: 360 TDPFKY 365
>sp|Q97PK0|Y1609_STRPN UPF0135 protein SP_1609 OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=SP_1609 PE=1 SV=1
Length = 265
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 75/184 (40%), Gaps = 40/184 (21%)
Query: 136 VPSKPEKFNSMIAISHK-IFR-----LLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTW 189
V EK +I + H IFR L RP ++L K++ AVY HT
Sbjct: 50 VAEAIEKGVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLIKHD-------IAVYVSHTNI 102
Query: 190 DAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGP 249
D ++ G+NDW + I E L + PE+ I +Q T E+A
Sbjct: 103 DIVENGLNDWFCQMLGIEETTYLQETGPER---------GIGRIGNIQPQT-FWELA--- 149
Query: 250 QQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLR---GKKAD 306
QQ K+ L + R + H L K I+ +A+C GSG + K AD
Sbjct: 150 QQVKQVFDLDSLR-------MVHYQEDDLQKP----ISRVAICGGSGQSFYKDALAKGAD 198
Query: 307 LYIT 310
+YIT
Sbjct: 199 VYIT 202
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 99 LAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEK 142
+ H+IAVY HT D ++ G+NDW + I E L + PE+
Sbjct: 89 IKHDIAVYVSHTNIDIVENGLNDWFCQMLGIEETTYLQETGPER 132
>sp|Q9KD39|Y1380_BACHD UPF0135 protein BH1380 OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH1380
PE=3 SV=1
Length = 372
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 85 VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFN 144
+ D R++ + H++ +Y+ HT D +GG+ND +A + + L P+ E
Sbjct: 78 IRTDTAYGRIIEKAIKHDLTIYAAHTNLDITKGGVNDLMADALGLKDIEVLAPTTTESLY 137
Query: 145 SMI 147
++
Sbjct: 138 KLV 140
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 180 FAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMI 224
+Y+ HT D +GG+ND +A + + L P+ E ++
Sbjct: 96 LTIYAAHTNLDITKGGVNDLMADALGLKDIEVLAPTTTESLYKLV 140
>sp|Q9L012|Y2301_STRCO UPF0135 protein SCO2301 OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=SCO2301 PE=3 SV=1
Length = 285
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 85 VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLV--PSKPEK 142
V +K RVV T + ++IA++ HT D G++D LA +++ PLV PS PE
Sbjct: 76 VAASTFKGRVVHTLIKNDIALHVAHTNADTADPGVSDALAGALDLNVVRPLVPDPSDPEG 135
Query: 143 FNSMIAISHKIFRLLLRPL 161
+ + L +R L
Sbjct: 136 RRGLGRVCELTHPLTVREL 154
>sp|Q8YS75|Y3216_NOSS1 UPF0135 protein alr3216 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=alr3216 PE=3 SV=1
Length = 263
Score = 38.5 bits (88), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 102 NIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSK 139
NI +YS HT +D ++ G D LA I + + P+VP++
Sbjct: 93 NIGIYSAHTNFDQVEDGTADVLAQILGLKDVAPIVPTQ 130
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 35/139 (25%)
Query: 78 WRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVP 137
W++ PG+ ++ E V CL +AV A+Q + I ++PL+
Sbjct: 27 WQIE-PGILHE---EARVLVCLTPTLAVMEEAI---ALQANL---------IFAHHPLIF 70
Query: 138 SKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGIN 197
S P+ AI+ + R F N+ +YS HT +D ++ G
Sbjct: 71 SPPKSLRRGEAIAD-----MARLAFTKNIG--------------IYSAHTNFDQVEDGTA 111
Query: 198 DWLASIYNISEYYPLVPSK 216
D LA I + + P+VP++
Sbjct: 112 DVLAQILGLKDVAPIVPTQ 130
>sp|Q58337|Y927_METJA UPF0135 protein MJ0927 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0927 PE=3 SV=2
Length = 244
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 93 RVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPL 135
+ + + ++I +YS HT D + G+ND LA +YN+ PL
Sbjct: 82 KKLKILMENDIILYSAHTNLDICKNGLNDALAELYNLENPKPL 124
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 182 VYSPHTTWDAIQGGINDWLASIYNISEYYPL 212
+YS HT D + G+ND LA +YN+ PL
Sbjct: 94 LYSAHTNLDICKNGLNDALAELYNLENPKPL 124
>sp|Q92BQ8|Y1489_LISIN UPF0135 protein lin1489 OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=lin1489 PE=3 SV=1
Length = 373
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 93 RVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISE 131
+++ + H+I V++ HT D QGG+ND LA + ++ +
Sbjct: 86 KMIKKLIKHDITVFAAHTNLDIAQGGVNDILADLLHLQD 124
>sp|Q8NWB9|Y1511_STAAW UPF0135 protein MW1511 OS=Staphylococcus aureus (strain MW2)
GN=MW1511 PE=3 SV=1
Length = 366
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 345 FVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKAD 404
FVTG++ HHD LDA G ++ + H SE + + TLL R + + S +
Sbjct: 301 FVTGDIKHHDALDAKIHGVNLIDINHY-SEYVMKEGLKTLLMNRFNTEKINIDVEASTIN 359
Query: 405 KDPIGYV 411
DP Y+
Sbjct: 360 TDPFQYI 366
>sp|Q6G907|Y1497_STAAS UPF0135 protein SAS1497 OS=Staphylococcus aureus (strain MSSA476)
GN=SAS1497 PE=3 SV=1
Length = 366
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 345 FVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKAD 404
FVTG++ HHD LDA G ++ + H SE + + TLL R + + S +
Sbjct: 301 FVTGDIKHHDALDAKIHGVNLIDINHY-SEYVMKEGLKTLLMNRFNTEKINIDVEASTIN 359
Query: 405 KDPIGYV 411
DP Y+
Sbjct: 360 TDPFQYI 366
>sp|Q9CGM3|Y1073_LACLA UPF0135 protein YkiD OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=ykiD PE=3 SV=1
Length = 257
Score = 35.8 bits (81), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 91 KERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISE 131
+E++V IAVY+ HT D + GG+ND+ + + +++
Sbjct: 81 QEKLVLDLARAGIAVYTSHTNIDVVTGGLNDYFSQLLGMTD 121
>sp|P67272|Y1559_STAAM UPF0135 protein SAV1559 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=SAV1559 PE=1 SV=1
Length = 366
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 345 FVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYV--SK 402
FVTG++ HHD LDA G ++ + H SE + + TLL W ++ + I V S
Sbjct: 301 FVTGDIKHHDALDAKIHGVNLIDINHY-SEYVMKEGLKTLLM--NWFNIEKINIDVEAST 357
Query: 403 ADKDPIGYV 411
+ DP Y+
Sbjct: 358 INTDPFQYI 366
>sp|P67273|Y1388_STAAN UPF0135 protein SA1388 OS=Staphylococcus aureus (strain N315)
GN=SA1388 PE=1 SV=1
Length = 366
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 345 FVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYV--SK 402
FVTG++ HHD LDA G ++ + H SE + + TLL W ++ + I V S
Sbjct: 301 FVTGDIKHHDALDAKIHGVNLIDINHY-SEYVMKEGLKTLLM--NWFNIEKINIDVEAST 357
Query: 403 ADKDPIGYV 411
+ DP Y+
Sbjct: 358 INTDPFQYI 366
>sp|P53434|Y1452_LISMO UPF0135 protein lmo1452 OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=lmo1452 PE=3 SV=1
Length = 373
Score = 35.0 bits (79), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 93 RVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASI 126
+++ + H+I V++ HT D QGG+N+ LA +
Sbjct: 86 KMIKKLIKHDITVFAAHTNLDIAQGGVNNILADL 119
>sp|Q10FF9|DUT_ORYSJ Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Oryza sativa
subsp. japonica GN=DUT PE=2 SV=1
Length = 171
Score = 35.0 bits (79), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 309 ITDATHRGTT-VLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRG 362
+ DA +RG V+L HSD++ + + ++I VT E++ + LDAT RG
Sbjct: 108 VIDADYRGPVGVILFNHSDTDFAVKPGDRIAQMIIEVIVTPEVAEVEDLDATVRG 162
>sp|Q6GGE0|Y1636_STAAR UPF0135 protein SAR1636 OS=Staphylococcus aureus (strain MRSA252)
GN=SAR1636 PE=3 SV=1
Length = 366
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 345 FVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYV--SK 402
FVTG++ HHD LDA G ++ + H SE + + TLL W + + I V S
Sbjct: 301 FVTGDIKHHDALDAKIHGVNLIDINHY-SEYVMKEGLKTLLM--NWFNTEKINIDVEAST 357
Query: 403 ADKDPIGYV 411
+ DP Y+
Sbjct: 358 INTDPFEYI 366
>sp|Q98QB0|Y456_MYCPU UPF0135 protein MYPU_4560 OS=Mycoplasma pulmonis (strain UAB CTIP)
GN=MYPU_4560 PE=3 SV=1
Length = 251
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 13/84 (15%)
Query: 90 WKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYP-LVPSKPEKFNSMIA 148
+KE++ + + I+VYS HT +DA + G + W+A E++P PS K+ ++I
Sbjct: 80 YKEKIYNKLVKLKISVYSLHTNFDADKQGTSYWVA-----KEFFPDEKPSPLGKYGALIK 134
Query: 149 ISHKIFRL--LLR-----PLFNNN 165
++ L +LR P+ NN
Sbjct: 135 TKIELSELKAILRKKYSGPIMTNN 158
>sp|P34544|MET2_CAEEL Probable histone-lysine N-methyltransferase met-2 OS=Caenorhabditis
elegans GN=met-2 PE=3 SV=4
Length = 1300
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 307 LYITDATHRGTTVLLLEHS-DSELHIHHVLHVYHILILGFV 346
LY+ DA RG L HS D +H+ HV++ H L L +V
Sbjct: 1214 LYVIDAKQRGNLGRFLNHSCDPNVHVQHVMYDTHDLRLPWV 1254
>sp|Q5RFV8|CB044_DANRE WD repeat-containing protein C2orf44 homolog OS=Danio rerio
GN=si:dkeyp-115a10.2 PE=2 SV=2
Length = 714
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 236 VQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEI 284
+ H+T +A +A Q +++S +PRYE L S P SKE +
Sbjct: 517 MDHITRMASLAVAGQASRDSSRPCSPRYETSEKLYSDATPPKNSKEKNL 565
>sp|Q5HFK1|Y1616_STAAC UPF0135 protein SACOL1616 OS=Staphylococcus aureus (strain COL)
GN=SACOL1616 PE=3 SV=1
Length = 366
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 345 FVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDW-------LK 397
FVTG++ HHD LDA G ++ + H SE + + LL ++W L
Sbjct: 301 FVTGDIKHHDALDAKIHGVNLIDINHY-SEYVMKEGLKALL-------MNWFNTEKINLD 352
Query: 398 IYVSKADKDPIGYV 411
+ S + DP Y+
Sbjct: 353 VEASTINTDPFQYI 366
>sp|Q9LCK1|GYRB_CYTHU DNA gyrase subunit B (Fragment) OS=Cytophaga hutchinsonii GN=gyrB
PE=3 SV=1
Length = 478
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 208 EYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKA 267
+Y+ ++P + + N A H+I E D ++++ V+FG ++ ++ + L RY
Sbjct: 340 KYHAILPLRGKILNVEKAQEHRIYENDEIKNMITALGVSFGTEEGEKVLNLTKLRYHKVI 399
Query: 268 SLISHDIPG 276
+ DI G
Sbjct: 400 IMTDADIDG 408
>sp|Q9LCK0|GYRB_CYTAU DNA gyrase subunit B (Fragment) OS=Cytophaga aurantiaca GN=gyrB
PE=3 SV=1
Length = 478
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 208 EYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKA 267
+Y+ ++P + + N A H+I E D ++++ V+FG ++ ++ + L RY
Sbjct: 340 KYHAILPLRGKILNVEKAQEHRIYENDEIKNMITALGVSFGTEEGEKVLNLTKLRYHKVI 399
Query: 268 SLISHDIPG 276
+ DI G
Sbjct: 400 IMTDADIDG 408
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,387,795
Number of Sequences: 539616
Number of extensions: 6565034
Number of successful extensions: 15013
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 14910
Number of HSP's gapped (non-prelim): 104
length of query: 411
length of database: 191,569,459
effective HSP length: 120
effective length of query: 291
effective length of database: 126,815,539
effective search space: 36903321849
effective search space used: 36903321849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)