Query psy18093
Match_columns 411
No_of_seqs 221 out of 1557
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 22:24:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00486 YbgI_SA1388 dinuclea 100.0 3.6E-47 7.9E-52 361.4 21.8 212 38-407 34-249 (249)
2 PF01784 NIF3: NIF3 (NGG1p int 100.0 8.9E-47 1.9E-51 356.5 13.6 207 38-390 30-240 (241)
3 KOG4131|consensus 100.0 4.8E-46 1E-50 354.3 18.7 232 35-410 40-271 (272)
4 PRK10799 metal-binding protein 100.0 6.8E-42 1.5E-46 325.0 20.4 198 39-390 34-235 (247)
5 COG0327 Uncharacterized conser 100.0 4.2E-41 9.1E-46 322.0 20.9 211 40-408 36-250 (250)
6 COG3323 Uncharacterized protei 98.2 6.8E-07 1.5E-11 77.6 2.5 95 152-261 4-107 (109)
7 PF01784 NIF3: NIF3 (NGG1p int 94.6 0.013 2.8E-07 56.2 0.8 92 81-214 31-123 (241)
8 KOG4131|consensus 94.5 0.018 3.9E-07 56.8 1.6 38 179-216 101-138 (272)
9 PRK10799 metal-binding protein 93.4 0.18 3.8E-06 48.8 6.1 85 81-208 34-120 (247)
10 TIGR00486 YbgI_SA1388 dinuclea 93.2 0.073 1.6E-06 51.5 3.1 90 80-212 34-124 (249)
11 COG0327 Uncharacterized conser 73.8 1.9 4.2E-05 42.2 1.8 85 80-209 34-122 (250)
12 cd00311 TIM Triosephosphate is 45.9 25 0.00054 34.5 3.9 46 343-391 68-116 (242)
13 cd07395 MPP_CSTP1 Homo sapiens 44.6 26 0.00057 33.2 3.7 64 48-114 148-219 (262)
14 cd07401 MPP_TMEM62_N Homo sapi 39.6 30 0.00065 33.4 3.3 65 45-115 147-212 (256)
15 PRK15492 triosephosphate isome 36.0 45 0.00097 33.2 3.9 45 343-390 78-125 (260)
16 PRK00042 tpiA triosephosphate 34.7 25 0.00053 34.8 1.9 28 343-373 70-97 (250)
17 PRK14567 triosephosphate isome 31.5 31 0.00068 34.3 2.1 32 343-377 69-100 (253)
18 PRK14565 triosephosphate isome 31.1 56 0.0012 32.2 3.7 28 343-373 69-96 (237)
19 COG0149 TpiA Triosephosphate i 30.7 34 0.00074 34.2 2.1 27 343-372 72-98 (251)
20 PLN02561 triosephosphate isome 30.2 35 0.00075 33.9 2.1 28 343-373 72-99 (253)
21 cd00842 MPP_ASMase acid sphing 28.7 50 0.0011 32.0 2.9 64 48-116 197-264 (296)
22 PF11312 DUF3115: Protein of u 28.6 25 0.00054 36.3 0.8 73 226-301 17-103 (315)
23 PTZ00333 triosephosphate isome 28.0 66 0.0014 31.9 3.6 45 344-391 74-121 (255)
24 TIGR00583 mre11 DNA repair pro 27.2 2.3E+02 0.0051 30.0 7.7 28 48-75 26-53 (405)
25 TIGR00419 tim triosephosphate 25.2 77 0.0017 30.5 3.4 43 343-390 65-108 (205)
26 PF00121 TIM: Triosephosphate 24.9 89 0.0019 30.7 3.9 46 343-391 68-116 (244)
27 PRK14566 triosephosphate isome 24.2 49 0.0011 33.1 2.0 29 343-374 79-107 (260)
28 PRK14905 triosephosphate isome 23.7 50 0.0011 34.3 2.0 32 343-377 79-110 (355)
29 PF02579 Nitro_FeMo-Co: Dinitr 22.3 1.3E+02 0.0029 23.7 3.8 22 347-368 59-80 (94)
30 PF08759 DUF1792: Domain of un 22.3 81 0.0018 31.2 3.0 35 341-379 173-207 (225)
31 KOG3087|consensus 21.7 25 0.00054 34.7 -0.6 49 284-338 151-201 (229)
32 cd07378 MPP_ACP5 Homo sapiens 21.7 83 0.0018 29.9 2.9 58 48-110 152-210 (277)
33 cd00839 MPP_PAPs purple acid p 20.5 1.9E+02 0.004 27.7 5.1 64 46-112 135-204 (294)
34 cd07396 MPP_Nbla03831 Homo sap 20.5 98 0.0021 29.8 3.2 64 48-115 163-230 (267)
35 PRK11148 cyclic 3',5'-adenosin 20.2 1E+02 0.0022 29.8 3.3 73 45-119 139-215 (275)
No 1
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=100.00 E-value=3.6e-47 Score=361.44 Aligned_cols=212 Identities=23% Similarity=0.254 Sum_probs=190.4
Q ss_pred CccceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccCCCC
Q psy18093 38 NTSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQG 117 (411)
Q Consensus 38 ~t~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDaa~g 117 (411)
..-++|++. +|.|.+|+++|+++++++||+|||++| +|+++++.+.+++| +.+|+||||+|||+|||||++++
T Consensus 34 ~~v~~I~~a---lD~t~~vi~~Ai~~~~dlIitHHP~~f---~~~~~~~~~~~~~~-~~~li~~~I~vy~~Ht~lD~~~~ 106 (249)
T TIGR00486 34 EEVKKVVVA---VDASESVADEAVRLGADLIITHHPLIW---KPLKRLIRGIKPGR-LKILLQNDISLYSAHTNLDAHDG 106 (249)
T ss_pred cccCEEEEE---ecCCHHHHHHHHHCCCCEEEEcCcccc---CCcccccCCCHHHH-HHHHHHCCCeEEEeecchhcCCC
Confidence 345667777 788999999999999999999999988 99999988888888 99999999999999999999999
Q ss_pred ChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceeccccccccHH
Q psy18093 118 GINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGIN 197 (411)
Q Consensus 118 GVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~ 197 (411)
|+|+|||+.||+++.+++.+. ++|+++
T Consensus 107 G~n~~La~~Lgl~~~~~~~~~-------------g~G~vg---------------------------------------- 133 (249)
T TIGR00486 107 GNNDALARALGLENPKEFEDY-------------GLGRVG---------------------------------------- 133 (249)
T ss_pred CHHHHHHHHcCCCccccccCC-------------CceeEE----------------------------------------
Confidence 999999999999887665431 566653
Q ss_pred HHHHhhcCCCccccCCCCCCeeeccCCCHHHhhcHhhHHHhcC-CcEEEeccCCcccccccccCchhhhhhhhcccCCCC
Q psy18093 198 DWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLT-HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPG 276 (411)
Q Consensus 198 ~~l~~~~~~~~~~~l~~~~~~~l~~~i~~~~~i~~~~v~~~L~-~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~~g 276 (411)
.++++++++++++ +|++.|+ +.+|++++
T Consensus 134 ---------------------~l~~~~~~~~~~~--~vk~~l~~~~vr~~~~---------------------------- 162 (249)
T TIGR00486 134 ---------------------EFKAPIESLEEVL--EIKKVLNVKPLLVVKN---------------------------- 162 (249)
T ss_pred ---------------------ECCCCCCHHHHHH--HHHHHhCCCCEEEeCC----------------------------
Confidence 5667899999999 9999999 89999863
Q ss_pred CCCcccCCceeEEEEEecCccchhhc---CCCcEEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchH
Q psy18093 277 HLSKENEIMINSIAVCAGSGGELLRG---KKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHH 353 (411)
Q Consensus 277 ~~~~~~~~~I~~iAvc~GsG~~ll~~---~~aD~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h 353 (411)
.+++|+|||||+|||++++.. ++||+|| |||++||
T Consensus 163 -----~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~I-------------------------------------TGd~k~h 200 (249)
T TIGR00486 163 -----GPEYVKKVAVVSGSGLSFIMKALREGVDAYI-------------------------------------TGDLSHH 200 (249)
T ss_pred -----CCCceeEEEEEcCchHHHHHHHHHcCCCEEE-------------------------------------ecCCchH
Confidence 367899999999999998865 4899999 9999999
Q ss_pred HHHHHHHcCCeEEEcCChhchHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCC
Q psy18093 354 DVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDP 407 (411)
Q Consensus 354 ~~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~~~~~~~~~~~~i~~s~~~~dP 407 (411)
++++|.+.|++||++|||.||+++++.|+++|++++ .+++.+++.++||
T Consensus 201 ~~~~A~~~gi~li~~gH~~sE~~~~~~la~~L~~~~-----~i~v~~~~~~~~~ 249 (249)
T TIGR00486 201 TAHLARELGLNVIDAGHYATERGGLRKLMEDLNENE-----GLEVVFSDIPTNA 249 (249)
T ss_pred HHHHHHHCCCEEEEcCcHHHHHHHHHHHHHHHHHhc-----CceEEEEeCCCCC
Confidence 999999999999999999999999999999999876 2899999999998
No 2
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=100.00 E-value=8.9e-47 Score=356.51 Aligned_cols=207 Identities=27% Similarity=0.435 Sum_probs=178.5
Q ss_pred CccceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccCCCC
Q psy18093 38 NTSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQG 117 (411)
Q Consensus 38 ~t~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDaa~g 117 (411)
..-++|++. +|.|.+||++|+++++++||||||++| +|+++++..+++++++.++++|||+|||+|||||.+++
T Consensus 30 ~~v~~V~~~---ld~t~~vi~~A~~~~~dlIItHHP~~f---~~~~~~~~~~~~~~~~~~li~~~I~vy~~Ht~lD~~~~ 103 (241)
T PF01784_consen 30 QEVKKVLVA---LDATPEVIEEAIEKGADLIITHHPLFF---KPLKSLTGDDYKGKIIEKLIKNGISVYSAHTNLDAAPG 103 (241)
T ss_dssp SBESEEEEE---SS-SHHHHHHHHHTT-SEEEESS-SSS---STSSHCHCHSHHHHHHHHHHHTT-EEEEESHHHHHSTT
T ss_pred cccCEEEEE---EeCCHHHHHHHHHcCCCEEEEcCchhh---cCCccccccchhhHHHHHHHHCCCEEEEecccccccCc
Confidence 344667777 788999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred ChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceeccccccccHH
Q psy18093 118 GINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGIN 197 (411)
Q Consensus 118 GVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~ 197 (411)
|+|+|||+.||+++.+++.|..... ..++|+++
T Consensus 104 G~n~~La~~Lgl~~~~~~~~~~~~~-------~~g~g~i~---------------------------------------- 136 (241)
T PF01784_consen 104 GVNDYLAKKLGLENIKPLDPSKSGE-------GYGLGRIG---------------------------------------- 136 (241)
T ss_dssp SHHHHHHHHHTEEEEEEEEEEEEEE-------EEECEEEE----------------------------------------
T ss_pred CHHHHHHHHhCCCCccccccccccc-------cceeeeEe----------------------------------------
Confidence 9999999999999999998764210 01566663
Q ss_pred HHHHhhcCCCccccCCCCCCeeeccCCCHHHhhcHhhHHHhcC-CcEEEeccCCcccccccccCchhhhhhhhcccCCCC
Q psy18093 198 DWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLT-HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPG 276 (411)
Q Consensus 198 ~~l~~~~~~~~~~~l~~~~~~~l~~~i~~~~~i~~~~v~~~L~-~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~~g 276 (411)
+++++++++++++ +|++.|+ +.+|++++
T Consensus 137 ---------------------~l~~~~s~~el~~--~vk~~l~~~~vr~~g~---------------------------- 165 (241)
T PF01784_consen 137 ---------------------ELPEPMSLEELAE--RVKEKLGLPGVRVVGD---------------------------- 165 (241)
T ss_dssp ---------------------EEEEEEEHHHHHH--HHHHHTTSS-EEEESC----------------------------
T ss_pred ---------------------ecCCCCCHHHHHH--HHHHHcCCCcEEecCC----------------------------
Confidence 5778899999999 9999999 89999852
Q ss_pred CCCcccCCceeEEEEEecCccchhhc---CCCcEEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchH
Q psy18093 277 HLSKENEIMINSIAVCAGSGGELLRG---KKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHH 353 (411)
Q Consensus 277 ~~~~~~~~~I~~iAvc~GsG~~ll~~---~~aD~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h 353 (411)
.+.+|+|||||+|||+++++. .++|+|| |||++||
T Consensus 166 -----~~~~v~rVav~~GsG~~~i~~a~~~g~D~~I-------------------------------------TGd~~~h 203 (241)
T PF01784_consen 166 -----PDKKVKRVAVCGGSGGSFIEEAAEAGADVYI-------------------------------------TGDIKYH 203 (241)
T ss_dssp -----TTSEEEEEEEECSSSGGGHHHHHHTTSSEEE-------------------------------------ESS--HH
T ss_pred -----CCCcccEEEEEcccCccHHHHHHhCCCeEEE-------------------------------------EccCcHH
Confidence 478999999999999999965 4999999 9999999
Q ss_pred HHHHHHHcCCeEEEcCChhchHHHHHHHHHHHHHHhc
Q psy18093 354 DVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLW 390 (411)
Q Consensus 354 ~~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~~~~~ 390 (411)
++++|.++|+++|++|||.||++|++.|.++|+++|+
T Consensus 204 ~~~~a~~~g~~lI~~gH~~sE~~~~~~l~~~L~~~f~ 240 (241)
T PF01784_consen 204 DAQDAKENGINLIDAGHYASERPGMEALAEWLKEKFP 240 (241)
T ss_dssp HHHHHHHCTSEEEE--HHHHGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEcCCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999986
No 3
>KOG4131|consensus
Probab=100.00 E-value=4.8e-46 Score=354.33 Aligned_cols=232 Identities=37% Similarity=0.481 Sum_probs=202.5
Q ss_pred eccCccceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccC
Q psy18093 35 TVANTSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDA 114 (411)
Q Consensus 35 ~~~~t~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDa 114 (411)
..++++.+||++ .|.|++|.++|++++++.|++.||.+| +|+++|+...|++|.+.+|++|||++|||||++|+
T Consensus 40 ~~~~~k~kVlLT---~DLTe~V~eEa~ek~~e~IvAYHP~IF---r~~krIt~~~~~e~~vi~~~~ngiavySPHtA~Da 113 (272)
T KOG4131|consen 40 SGSRKKKKVLLT---NDLTESVAEEALEKNAESIVAYHPPIF---RPLKRITKSYPQERKVIKAIANGIAVYSPHTAVDA 113 (272)
T ss_pred CCccccceeeEe---ccchHHHHHHHHHhCCceeEeecCccc---cchhhhcccchHHHHHHHHHhcCceeecchhhhcc
Confidence 457788999999 466999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceeccccccc
Q psy18093 115 IQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQG 194 (411)
Q Consensus 115 a~gGVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~ 194 (411)
+.+||||||++.++....+|+.|++...-++. -|+||..
T Consensus 114 a~~gVNdwls~gIN~~~~~p~~~t~~gp~~~~----~G~gr~~------------------------------------- 152 (272)
T KOG4131|consen 114 AGGGVNDWLSKGINANLSRPNDPTKNGPMEET----IGYGREE------------------------------------- 152 (272)
T ss_pred cccchhHHHHHhhhhhhcCCccccccCCCccc----cccccee-------------------------------------
Confidence 99999999999999777888888762100011 1455542
Q ss_pred cHHHHHHhhcCCCccccCCCCCCeeeccCCCHHHhhcHhhHHHhcCCcEEEeccCCcccccccccCchhhhhhhhcccCC
Q psy18093 195 GINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDI 274 (411)
Q Consensus 195 g~~~~l~~~~~~~~~~~l~~~~~~~l~~~i~~~~~i~~~~v~~~L~~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~ 274 (411)
+++-++++.++++ ++|+.| ++++++.+.
T Consensus 153 ------------------------e~~~~~~~~~~l~--~ik~~l-~~v~val~~------------------------- 180 (272)
T KOG4131|consen 153 ------------------------ETKINLNVVEILK--RIKRGL-SSVRVALAV------------------------- 180 (272)
T ss_pred ------------------------eccCcccHHHHHH--HHHhcC-CeEEEeecc-------------------------
Confidence 4556778899999 888844 788888642
Q ss_pred CCCCCcccCCceeEEEEEecCccchhhcCCCcEEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchHH
Q psy18093 275 PGHLSKENEIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHD 354 (411)
Q Consensus 275 ~g~~~~~~~~~I~~iAvc~GsG~~ll~~~~aD~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h~ 354 (411)
|| .++..|++||||+|||++++.+..||+|| ||||||||
T Consensus 181 -g~---~~~~~i~~V~vcAgsg~svlk~~~adly~-------------------------------------TGEmSHH~ 219 (272)
T KOG4131|consen 181 -GH---TLESQIKKVAVCAGSGSSVLKGVDADLYI-------------------------------------TGEMSHHD 219 (272)
T ss_pred -CC---ccccceeEEEEeeccCcceeccccccEEE-------------------------------------eccccHHH
Confidence 44 35788999999999999999999999999 99999999
Q ss_pred HHHHHHcCCeEEEcCChhchHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCCcee
Q psy18093 355 VLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGY 410 (411)
Q Consensus 355 ~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~~~~~~~~~~~~i~~s~~~~dP~~~ 410 (411)
+|+|+++|++||+++|++|||.||+.|...|...|.++ +|.||+.|+||...
T Consensus 220 vL~~~~~g~sVilc~HSNtERgfL~d~~~kl~~~l~~~----~v~vS~~D~DPlt~ 271 (272)
T KOG4131|consen 220 VLDAAANGISVILCEHSNTERGFLSDLCDKLASSLEEE----EVIVSKMDKDPLTV 271 (272)
T ss_pred HHHHHHcCCeEEEecCCCccchhHHHHHHHHHhhCCcc----eEEEeecCCCCccc
Confidence 99999999999999999999999999999999999873 89999999999864
No 4
>PRK10799 metal-binding protein; Provisional
Probab=100.00 E-value=6.8e-42 Score=325.02 Aligned_cols=198 Identities=18% Similarity=0.191 Sum_probs=169.4
Q ss_pred ccceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccCCCC-
Q psy18093 39 TSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQG- 117 (411)
Q Consensus 39 t~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDaa~g- 117 (411)
.=++|++. +|.+.+++++|+++++++||+|||++| +|.+++ ..+++++++++|+++||+|||+|||||++++
T Consensus 34 ~v~~I~~a---lD~t~~vi~~A~~~~~dlIitHHP~~~---~~~~~~-~~~~~~~~~~~li~~~i~vy~~Htn~D~~~~~ 106 (247)
T PRK10799 34 TVQKIVTG---VTASQALLDEAVRLQADAVIVHHGYFW---KGESPV-IRGMKRNRLKTLLANDINLYGWHLPLDAHPEL 106 (247)
T ss_pred cccEEEEE---eCCCHHHHHHHHHCCCCEEEECCchhc---cCCCcc-ccchHHHHHHHHHHCCCeEEEEecchhhCCCC
Confidence 34478877 788999999999999999999999987 888776 3558999999999999999999999999996
Q ss_pred ChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceeccccccccHH
Q psy18093 118 GINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGIN 197 (411)
Q Consensus 118 GVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~ 197 (411)
|+|+|||+.|||++...+. +++++
T Consensus 107 G~n~~la~~Lgl~~~~~~~---------------~~~~~----------------------------------------- 130 (247)
T PRK10799 107 GNNAQLAALLGITVMGEIE---------------PLVPW----------------------------------------- 130 (247)
T ss_pred CHHHHHHHHcCCCcccCcC---------------Cceee-----------------------------------------
Confidence 9999999999997532211 12222
Q ss_pred HHHHhhcCCCccccCCCCCCeeeccCCCHHHhhcHhhHHHhcCCcEEEeccCCcccccccccCchhhhhhhhcccCCCCC
Q psy18093 198 DWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGH 277 (411)
Q Consensus 198 ~~l~~~~~~~~~~~l~~~~~~~l~~~i~~~~~i~~~~v~~~L~~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~~g~ 277 (411)
+.++++++++++++ +|++.|+...++.++
T Consensus 131 --------------------g~l~~~~s~~~l~~--~vk~~l~~~~~~~~~----------------------------- 159 (247)
T PRK10799 131 --------------------GELTMPVPGLELAS--WIEARLGRKPLWCGD----------------------------- 159 (247)
T ss_pred --------------------EECCCCcCHHHHHH--HHHHHhCCCeEEECC-----------------------------
Confidence 35667899999999 999999922444432
Q ss_pred CCcccCCceeEEEEEecCccchhhcC---CCcEEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchHH
Q psy18093 278 LSKENEIMINSIAVCAGSGGELLRGK---KADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHD 354 (411)
Q Consensus 278 ~~~~~~~~I~~iAvc~GsG~~ll~~~---~aD~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h~ 354 (411)
..+++|+|||||+|||+++++.+ +||+|| |||+|||+
T Consensus 160 ---~~~~~i~rVAi~~GsG~~~i~~a~~~gaD~~I-------------------------------------TGd~k~h~ 199 (247)
T PRK10799 160 ---TGPEVVQRVAWCTGGGQSFIDSAARFGVDAFI-------------------------------------TGEVSEQT 199 (247)
T ss_pred ---CCCCcccEEEEECCchHHHHHHHHHcCCCEEE-------------------------------------ECCcchHH
Confidence 12478999999999999988764 899999 99999999
Q ss_pred HHHHHHcCCeEEEcCChhchHHHHHHHHHHHHHHhc
Q psy18093 355 VLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLW 390 (411)
Q Consensus 355 ~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~~~~~ 390 (411)
+++|.+.|+++|++|||.||+++++.|+++|+++|.
T Consensus 200 ~~~A~~~gl~li~~GH~~sE~~~~~~la~~L~~~~~ 235 (247)
T PRK10799 200 IHSAREQGLHFYAAGHHATERGGIRALSEWLNENTD 235 (247)
T ss_pred HHHHHHCCCeEEEcCchHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999995
No 5
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.2e-41 Score=321.97 Aligned_cols=211 Identities=26% Similarity=0.343 Sum_probs=186.4
Q ss_pred cceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccCCCCCh
Q psy18093 40 STHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGI 119 (411)
Q Consensus 40 ~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDaa~gGV 119 (411)
-.+|++. +|.+++++++|++.++++||+|||++| ++.+.+..+++++++++++++|||+||++|||||++++|.
T Consensus 36 v~kV~~a---vd~t~~vi~~Ai~~~ad~ii~HHplif---~~~~~~~~~~~~~~~i~~li~~~I~ly~~HtnlD~~~~g~ 109 (250)
T COG0327 36 VKKVAVA---LDATLAVLDEAIELGADLLIVHHPLIF---WPVKSLAIDGPKGKRIKALIQNDINLYAAHTNLDAHPEGG 109 (250)
T ss_pred cceEEEE---eeCCHHHHHHHHHCCCCEEEEcCchhc---CCCccccccchHHHHHHHHHhCCCeEEEcccccccccccc
Confidence 4566666 788999999999999999999999999 8888988889999999999999999999999999999999
Q ss_pred HHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceeccccccccHHHH
Q psy18093 120 NDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDW 199 (411)
Q Consensus 120 NDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~~~ 199 (411)
|+|+++.+++.+..+..+ . ++|++
T Consensus 110 N~a~~~~l~~~~~~~~~~---~----------~~g~~------------------------------------------- 133 (250)
T COG0327 110 NDALAAALLGAEELPPFG---E----------GLGRV------------------------------------------- 133 (250)
T ss_pred cHHHHHHhcCcccccccc---c----------ccceE-------------------------------------------
Confidence 999999988766544322 1 34554
Q ss_pred HHhhcCCCccccCCCCCCeeeccCCCHHHhhcHhhHHHhcC-CcEEEeccCCcccccccccCchhhhhhhhcccCCCCCC
Q psy18093 200 LASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLT-HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHL 278 (411)
Q Consensus 200 l~~~~~~~~~~~l~~~~~~~l~~~i~~~~~i~~~~v~~~L~-~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~~g~~ 278 (411)
+.++++++++++++ ++++.|+ +.+++..
T Consensus 134 ------------------g~~~~~~~l~~l~~--~i~~~l~~~~~~~~~------------------------------- 162 (250)
T COG0327 134 ------------------GELKEPTTLEELAE--RIKAKLGRPPLRVVK------------------------------- 162 (250)
T ss_pred ------------------EEeCCCCCHHHHHH--HHHHHcCCCCEEEcc-------------------------------
Confidence 36778899999999 9999998 7777764
Q ss_pred CcccCCceeEEEEEecCccchhhc---CCCcEEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchHHH
Q psy18093 279 SKENEIMINSIAVCAGSGGELLRG---KKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDV 355 (411)
Q Consensus 279 ~~~~~~~I~~iAvc~GsG~~ll~~---~~aD~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h~~ 355 (411)
+.+..|+|||||+|||++++.. .++|+|| |||+|||++
T Consensus 163 --~~~~~i~rvAv~~G~g~~~~~~a~~~gvD~~i-------------------------------------TGd~~~~~~ 203 (250)
T COG0327 163 --DGSEEIKRVAVCSGSGQGFLSEAAAEGVDAYI-------------------------------------TGDLSHHTA 203 (250)
T ss_pred --CccccCceEEEEeCCChHHHHHHHHcCCCEEE-------------------------------------ECCCcHHHH
Confidence 2367899999999999988876 4899999 999999999
Q ss_pred HHHHHcCCeEEEcCChhchHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCCc
Q psy18093 356 LDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPI 408 (411)
Q Consensus 356 lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~~~~~~~~~~~~i~~s~~~~dP~ 408 (411)
++|.+.|+++|++|||+||++|++.+.++|++.+ ++++.+|+ ++||+
T Consensus 204 ~~a~e~gi~~i~~gH~~tE~~g~~~l~~~l~~~~-----~~~v~~~~-~~~p~ 250 (250)
T COG0327 204 HDARELGLSVIDAGHYATERPGLKALAELLKELL-----GVEVTFSD-IPNPL 250 (250)
T ss_pred HHHHHCCCeEEecCchHHHHHHHHHHHHHHHHhc-----CceEEEec-CCCCC
Confidence 9999999999999999999999999999999884 48999999 99986
No 6
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.21 E-value=6.8e-07 Score=77.61 Aligned_cols=95 Identities=12% Similarity=0.150 Sum_probs=75.0
Q ss_pred ceeEEEEccCCCchHhHhhccccCCCCCcccccceeccccccccHHHHHHhhcCCCccccCCCC------CCeeeccCCC
Q psy18093 152 KIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPS------KPEKFNSMIA 225 (411)
Q Consensus 152 glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~~~l~~~~~~~~~~~l~~~------~~~~l~~~i~ 225 (411)
.+.|+++++|.++.+.++++++++|++++|.|+ ||+|.+...| +|.. ++...|..+. ..+...+.+.
T Consensus 4 ~~~K~~vyVP~~~~e~vr~aL~~aGag~iG~Y~-~C~~~~~g~G--~frP----~egAnP~iGevgk~e~v~E~kiE~v~ 76 (109)
T COG3323 4 PLYKIEVYVPEEYVEQVRDALFEAGAGHIGNYD-HCTFSSEGTG--QFRP----LEGANPFIGEVGKLEFVAEVKIEFVV 76 (109)
T ss_pred ceeEEEEEeCHHHHHHHHHHHHhcCCcceeccc-eEEEEeeeeE--EEee----cCCCCCcccccceEEeeeeeEEEEEc
Confidence 578999999999999999999999999999999 9999998888 5532 2455555532 1255566777
Q ss_pred HHHhhcHhhHHHhcC---CcEEEeccCCcccccccccCc
Q psy18093 226 ISHKINETDVVQHLT---HIAEVAFGPQQAKESVTLFNP 261 (411)
Q Consensus 226 ~~~~i~~~~v~~~L~---~~~~~a~~~~~~~~~~~l~~~ 261 (411)
..++.+ .+.+.+. |+.++++ ++++|.|+
T Consensus 77 ~~~~~~--~v~~~ik~aHPYEePa~------di~~l~~~ 107 (109)
T COG3323 77 PAELRA--AVLSAIKKAHPYEEPAI------DVIPLLNE 107 (109)
T ss_pred CHHHHH--HHHHHHHHhCCCCCcce------EEEEcccC
Confidence 788888 8888887 8888887 57777764
No 7
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=94.56 E-value=0.013 Score=56.23 Aligned_cols=92 Identities=24% Similarity=0.253 Sum_probs=57.9
Q ss_pred CCCcc-CCCChHHHHHHHHHHcCceEEeccccccCCCCChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEc
Q psy18093 81 NGPGV-TNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLR 159 (411)
Q Consensus 81 pLK~I-t~d~~K~rvv~~LIkngIALYSaHTNLDaa~gGVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~ 159 (411)
+++++ ..-++..+++.+|+++|+.+.-.|-++-..+ .+.+.... ..
T Consensus 31 ~v~~V~~~ld~t~~vi~~A~~~~~dlIItHHP~~f~~---------------~~~~~~~~------------~~------ 77 (241)
T PF01784_consen 31 EVKKVLVALDATPEVIEEAIEKGADLIITHHPLFFKP---------------LKSLTGDD------------YK------ 77 (241)
T ss_dssp BESEEEEESS-SHHHHHHHHHTT-SEEEESS-SSSST---------------SSHCHCHS------------HH------
T ss_pred ccCEEEEEEeCCHHHHHHHHHcCCCEEEEcCchhhcC---------------Cccccccc------------hh------
Confidence 34443 3446678999999999999999999984411 11110000 00
Q ss_pred cCCCchHhHhhccccCCCCCcccccceeccccccccHHHHHHhhcCCCccccCCC
Q psy18093 160 PLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVP 214 (411)
Q Consensus 160 vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~~~l~~~~~~~~~~~l~~ 214 (411)
...++.+.. ..+++|++||+||...+|+|++|++.+++.+..|+.+
T Consensus 78 -----~~~~~~li~----~~I~vy~~Ht~lD~~~~G~n~~La~~Lgl~~~~~~~~ 123 (241)
T PF01784_consen 78 -----GKIIEKLIK----NGISVYSAHTNLDAAPGGVNDYLAKKLGLENIKPLDP 123 (241)
T ss_dssp -----HHHHHHHHH----TT-EEEEESHHHHHSTTSHHHHHHHHHTEEEEEEEEE
T ss_pred -----hHHHHHHHH----CCCEEEEecccccccCcCHHHHHHHHhCCCCcccccc
Confidence 011122211 1478999999999999999999999999988777643
No 8
>KOG4131|consensus
Probab=94.45 E-value=0.018 Score=56.84 Aligned_cols=38 Identities=50% Similarity=0.714 Sum_probs=30.6
Q ss_pred CcccccceeccccccccHHHHHHhhcCCCccccCCCCC
Q psy18093 179 FFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSK 216 (411)
Q Consensus 179 ~~~~y~~h~~~d~~~~g~~~~l~~~~~~~~~~~l~~~~ 216 (411)
.+++||||+++|++.+|+|+||...+|.-...|..+++
T Consensus 101 giavySPHtA~Daa~~gVNdwls~gIN~~~~~p~~~t~ 138 (272)
T KOG4131|consen 101 GIAVYSPHTAVDAAGGGVNDWLSKGINANLSRPNDPTK 138 (272)
T ss_pred CceeecchhhhcccccchhHHHHHhhhhhhcCCccccc
Confidence 48999999999999999999999988844455555443
No 9
>PRK10799 metal-binding protein; Provisional
Probab=93.40 E-value=0.18 Score=48.81 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=54.8
Q ss_pred CCCcc-CCCChHHHHHHHHHHcCceEEeccccccCCCCChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEc
Q psy18093 81 NGPGV-TNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLR 159 (411)
Q Consensus 81 pLK~I-t~d~~K~rvv~~LIkngIALYSaHTNLDaa~gGVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~ 159 (411)
++++| ..-++..+++.+|+++|+.+.-.|-++=..+. . ++.+. .
T Consensus 34 ~v~~I~~alD~t~~vi~~A~~~~~dlIitHHP~~~~~~--~-------------~~~~~-~------------------- 78 (247)
T PRK10799 34 TVQKIVTGVTASQALLDEAVRLQADAVIVHHGYFWKGE--S-------------PVIRG-M------------------- 78 (247)
T ss_pred cccEEEEEeCCCHHHHHHHHHCCCCEEEECCchhccCC--C-------------ccccc-h-------------------
Confidence 34443 33456789999999999999999998742210 0 00000 0
Q ss_pred cCCCchHhHhhccccCCCCCcccccceeccccccc-cHHHHHHhhcCCCc
Q psy18093 160 PLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQG-GINDWLASIYNISE 208 (411)
Q Consensus 160 vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~-g~~~~l~~~~~~~~ 208 (411)
....++.+.. ..+++|++||+||+..+ |+|++|++.+++..
T Consensus 79 ----~~~~~~~li~----~~i~vy~~Htn~D~~~~~G~n~~la~~Lgl~~ 120 (247)
T PRK10799 79 ----KRNRLKTLLA----NDINLYGWHLPLDAHPELGNNAQLAALLGITV 120 (247)
T ss_pred ----HHHHHHHHHH----CCCeEEEEecchhhCCCCCHHHHHHHHcCCCc
Confidence 0011111111 13788999999999885 99999999888764
No 10
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=93.17 E-value=0.073 Score=51.48 Aligned_cols=90 Identities=22% Similarity=0.142 Sum_probs=58.3
Q ss_pred CCCCcc-CCCChHHHHHHHHHHcCceEEeccccccCCCCChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEE
Q psy18093 80 VNGPGV-TNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLL 158 (411)
Q Consensus 80 ~pLK~I-t~d~~K~rvv~~LIkngIALYSaHTNLDaa~gGVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v 158 (411)
.++++| ..-++..+++.+|+++|+.+.-.|-++=..+ +++ + .... ..+|
T Consensus 34 ~~v~~I~~alD~t~~vi~~Ai~~~~dlIitHHP~~f~~------------~~~---~--~~~~----------~~~~--- 83 (249)
T TIGR00486 34 EEVKKVVVAVDASESVADEAVRLGADLIITHHPLIWKP------------LKR---L--IRGI----------KPGR--- 83 (249)
T ss_pred cccCEEEEEecCCHHHHHHHHHCCCCEEEEcCccccCC------------ccc---c--cCCC----------HHHH---
Confidence 344443 3346678999999999999999998874321 000 0 0000 0011
Q ss_pred ccCCCchHhHhhccccCCCCCcccccceeccccccccHHHHHHhhcCCCccccC
Q psy18093 159 RPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPL 212 (411)
Q Consensus 159 ~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~~~l~~~~~~~~~~~l 212 (411)
++++.. ..+++|++||+||...+|+|+||++.+++.+..|+
T Consensus 84 ---------~~~li~----~~I~vy~~Ht~lD~~~~G~n~~La~~Lgl~~~~~~ 124 (249)
T TIGR00486 84 ---------LKILLQ----NDISLYSAHTNLDAHDGGNNDALARALGLENPKEF 124 (249)
T ss_pred ---------HHHHHH----CCCeEEEeecchhcCCCCHHHHHHHHcCCCccccc
Confidence 111111 23789999999999999999999999988765433
No 11
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=73.81 E-value=1.9 Score=42.19 Aligned_cols=85 Identities=18% Similarity=0.042 Sum_probs=54.6
Q ss_pred CCCCcc-CCCChHHHHHHHHHHcCceEEeccccccCCCC-C--hHHHHHHHcCCccceecCCCCCcccchhhhhccceeE
Q psy18093 80 VNGPGV-TNDKWKERVVSTCLAHNIAVYSPHTTWDAIQG-G--INDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFR 155 (411)
Q Consensus 80 ~pLK~I-t~d~~K~rvv~~LIkngIALYSaHTNLDaa~g-G--VNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGK 155 (411)
.+++++ +.-+..+.++.+|++++.++.-.|-++=..+. . ++.++.+
T Consensus 34 ~~v~kV~~avd~t~~vi~~Ai~~~ad~ii~HHplif~~~~~~~~~~~~~~------------------------------ 83 (250)
T COG0327 34 EEVKKVAVALDATLAVLDEAIELGADLLIVHHPLIFWPVKSLAIDGPKGK------------------------------ 83 (250)
T ss_pred cccceEEEEeeCCHHHHHHHHHCCCCEEEEcCchhcCCCccccccchHHH------------------------------
Confidence 344443 34456789999999999998888888432221 0 1111111
Q ss_pred EEEccCCCchHhHhhccccCCCCCcccccceeccccccccHHHHHHhhcCCCcc
Q psy18093 156 LLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEY 209 (411)
Q Consensus 156 L~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~~~l~~~~~~~~~ 209 (411)
.++++.. ..+++|++|+++|+..+|.|+|++..+++.+.
T Consensus 84 -----------~i~~li~----~~I~ly~~HtnlD~~~~g~N~a~~~~l~~~~~ 122 (250)
T COG0327 84 -----------RIKALIQ----NDINLYAAHTNLDAHPEGGNDALAAALLGAEE 122 (250)
T ss_pred -----------HHHHHHh----CCCeEEEcccccccccccccHHHHHHhcCccc
Confidence 1111111 12678999999999999999999997776554
No 12
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=45.88 E-value=25 Score=34.51 Aligned_cols=46 Identities=24% Similarity=0.295 Sum_probs=29.9
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHH---HHHHHHHHHHHHhcc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERP---FLQTMHTLLQIRLWH 391 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~---~~~~l~~~L~~~~~~ 391 (411)
-|-.|||+|---..|+ |...+.+||++.-+. --+.+...++..+..
T Consensus 68 ~Ga~TGevS~~mL~d~---G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~ 116 (242)
T cd00311 68 SGAFTGEISAEMLKDA---GAKYVIIGHSERRQYFGETDEDVAKKVKAALEA 116 (242)
T ss_pred CCCCcCcCCHHHHHHc---CCCEEEeCcccccCcCCCCcHHHHHHHHHHHHC
Confidence 3555999997766555 999999999743222 234555555555543
No 13
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=44.64 E-value=26 Score=33.22 Aligned_cols=64 Identities=13% Similarity=0.036 Sum_probs=38.1
Q ss_pred CCccchHHHHhccc--ccCCceEEEcCCceeeccCCCCcc----CC-CChHHHHHHHHHHcCc-eEEeccccccC
Q psy18093 48 SDLGTYLSVLYSSP--RKYDSVTVAKCPVALLWRVNGPGV----TN-DKWKERVVSTCLAHNI-AVYSPHTTWDA 114 (411)
Q Consensus 48 ~~l~~~~~vl~~a~--~~~~~~ii~hhPl~~~~~~pLK~I----t~-d~~K~rvv~~LIkngI-ALYSaHTNLDa 114 (411)
+++.-.++.|+++. +..-.++++|||++. .+.... .. ....+++...+-++++ .+++-|+=.+.
T Consensus 148 ~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~---~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~ 219 (262)
T cd07395 148 AQDVWLEEQLEIAKESDCKHVIVFQHIPWFL---EDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNA 219 (262)
T ss_pred HHHHHHHHHHHHHHhccCCcEEEEECcCCcc---CCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCC
Confidence 34455777888776 334568999999965 222111 01 1123455566666888 57787776544
No 14
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=39.60 E-value=30 Score=33.41 Aligned_cols=65 Identities=9% Similarity=-0.030 Sum_probs=39.3
Q ss_pred ecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCce-EEeccccccCC
Q psy18093 45 IKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIA-VYSPHTTWDAI 115 (411)
Q Consensus 45 ~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIA-LYSaHTNLDaa 115 (411)
+++++++..++.++++.+..-.++++|||+.. |.... ... ..+....+.++++. +++-|+=.+..
T Consensus 147 l~~~ql~wL~~~L~~~~~~~~~IV~~HhP~~~-~~~~~----~~~-~~~~~~ll~~~~v~~vl~GH~H~~~~ 212 (256)
T cd07401 147 LDKKLLDRLEKELEKSTNSNYTIWFGHYPTST-IISPS----AKS-SSKFKDLLKKYNVTAYLCGHLHPLGG 212 (256)
T ss_pred CCHHHHHHHHHHHHhcccCCeEEEEEcccchh-ccCCC----cch-hHHHHHHHHhcCCcEEEeCCccCCCc
Confidence 33455556777777777667789999999843 21111 111 22355566677874 67777766554
No 15
>PRK15492 triosephosphate isomerase; Provisional
Probab=35.96 E-value=45 Score=33.23 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=29.3
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHHHHH---HHHHHHHHHhc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQ---TMHTLLQIRLW 390 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~~---~l~~~L~~~~~ 390 (411)
.|-.|||+|---..|+ |...+.+||++.-+.|-+ .+...++..+.
T Consensus 78 ~Ga~TGevSa~mLkd~---G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~ 125 (260)
T PRK15492 78 NGQFTGDISPLMLKEI---GTQLVMIGHSERRHKFGETDQEENAKVLAALK 125 (260)
T ss_pred CCCccCcCCHHHHHHc---CCCEEEECccccccccCcchHHHHHHHHHHHH
Confidence 4667999997766555 999999999754333322 33334444443
No 16
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=34.71 E-value=25 Score=34.75 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=22.4
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDS 373 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~s 373 (411)
-|-.|||+|---..|+ |...+.+||++.
T Consensus 70 ~Ga~TGevS~~mLkd~---G~~~viiGHSER 97 (250)
T PRK00042 70 SGAFTGEISAEMLKDL---GVKYVIIGHSER 97 (250)
T ss_pred CCCccCccCHHHHHHC---CCCEEEeCcccc
Confidence 4666999997776555 999999999744
No 17
>PRK14567 triosephosphate isomerase; Provisional
Probab=31.54 E-value=31 Score=34.30 Aligned_cols=32 Identities=38% Similarity=0.489 Sum_probs=23.8
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHHH
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPF 377 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~ 377 (411)
.|-.|||+|---..|+ |...+.+||++.-+.|
T Consensus 69 ~Ga~TGEvS~~mLkd~---G~~yviiGHSERR~~f 100 (253)
T PRK14567 69 DGAYTGEISARMLEDI---GCDYLLIGHSERRSLF 100 (253)
T ss_pred CCCccCcCCHHHHHHc---CCCEEEECcccccCcc
Confidence 4667999997666555 9999999997543333
No 18
>PRK14565 triosephosphate isomerase; Provisional
Probab=31.06 E-value=56 Score=32.24 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=22.2
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDS 373 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~s 373 (411)
-|-.|||+|---..|+ |.....+||++.
T Consensus 69 ~Ga~TGevS~~mLkd~---G~~~viiGHSER 96 (237)
T PRK14565 69 SGGYTGEISAKMLKEC---GCSYVILGHSER 96 (237)
T ss_pred CCCccCccCHHHHHHc---CCCEEEECcccc
Confidence 3666999997776555 999999999743
No 19
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=30.66 E-value=34 Score=34.22 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=22.4
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChh
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSD 372 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~ 372 (411)
.|-.|||+|---..|+ |...+.+|||+
T Consensus 72 ~GA~TGeiS~~mL~d~---G~~~viiGHSE 98 (251)
T COG0149 72 SGAFTGEISAEMLKDL---GAKYVLIGHSE 98 (251)
T ss_pred CCCccCcCCHHHHHHc---CCCEEEECccc
Confidence 5666999997777666 99999999974
No 20
>PLN02561 triosephosphate isomerase
Probab=30.20 E-value=35 Score=33.94 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=22.4
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDS 373 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~s 373 (411)
-|-.|||+|---..|+ |...+.+||++.
T Consensus 72 ~Ga~TGevS~~mL~d~---G~~~viiGHSER 99 (253)
T PLN02561 72 GGAFTGEISAEMLVNL---GIPWVILGHSER 99 (253)
T ss_pred CCCccCcCCHHHHHHc---CCCEEEECcccc
Confidence 4566999997776665 999999999744
No 21
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=28.70 E-value=50 Score=31.96 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=40.4
Q ss_pred CCccchHHHHhcccccCCce-EEEcCCceeeccCCCCccCCCChHHHHHHHHHHcC--c-eEEeccccccCCC
Q psy18093 48 SDLGTYLSVLYSSPRKYDSV-TVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHN--I-AVYSPHTTWDAIQ 116 (411)
Q Consensus 48 ~~l~~~~~vl~~a~~~~~~~-ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkng--I-ALYSaHTNLDaa~ 116 (411)
+++.-.++.|++|.+++..+ |+.|||... ...... ..+.++....+-+.. | .+++-||-.|...
T Consensus 197 ~Ql~WL~~~L~~a~~~~~~v~I~~HiPp~~---~~~~~~--~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~ 264 (296)
T cd00842 197 GQLQWLEDELQEAEQAGEKVWIIGHIPPGV---NSYDTL--ENWSERYLQIINRYSDTIAGQFFGHTHRDEFR 264 (296)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEeccCCCC---cccccc--hHHHHHHHHHHHHHHHhhheeeecccccceEE
Confidence 45566888999988777665 888999865 221111 233444444444433 4 6899999988643
No 22
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=28.60 E-value=25 Score=36.29 Aligned_cols=73 Identities=26% Similarity=0.402 Sum_probs=45.5
Q ss_pred HHHhhcHhhHHHhcC--CcEEEeccCCccccccccc-Cc-hh--------hhhhhhcccCCCCC--CCcccCCceeEEEE
Q psy18093 226 ISHKINETDVVQHLT--HIAEVAFGPQQAKESVTLF-NP-RY--------EIKASLISHDIPGH--LSKENEIMINSIAV 291 (411)
Q Consensus 226 ~~~~i~~~~v~~~L~--~~~~~a~~~~~~~~~~~l~-~~-~~--------~~k~~l~~~~~~g~--~~~~~~~~I~~iAv 291 (411)
+.+.+| .||++|. .+.. ||+...-++-|.+- -| |. .+++-+....++.. ...+..+..+.+.|
T Consensus 17 l~~~iQ--~VK~~LYnRDf~~-AF~~~~~L~AYA~RWSPsRAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCI 93 (315)
T PF11312_consen 17 LQELIQ--EVKGHLYNRDFAA-AFGDEEKLEAYAARWSPSRALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCI 93 (315)
T ss_pred HHHHHH--HHHHHHhcchHHH-HhCChhhhhhheeccCHHHHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEE
Confidence 788999 9999998 4443 66655555555555 33 33 66666655555521 11122345777888
Q ss_pred EecCccchhh
Q psy18093 292 CAGSGGELLR 301 (411)
Q Consensus 292 c~GsG~~ll~ 301 (411)
.||+|+|++.
T Consensus 94 GGGAGAElVA 103 (315)
T PF11312_consen 94 GGGAGAELVA 103 (315)
T ss_pred CCChHHHHHH
Confidence 8999988764
No 23
>PTZ00333 triosephosphate isomerase; Provisional
Probab=27.98 E-value=66 Score=31.94 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=31.4
Q ss_pred cCcccccchHHHHHHHHcCCeEEEcCChhchHHHH---HHHHHHHHHHhcc
Q psy18093 344 GFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFL---QTMHTLLQIRLWH 391 (411)
Q Consensus 344 ~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~---~~l~~~L~~~~~~ 391 (411)
|-.|||+|---..|+ |...+.+||++.-+.|- +.+...++..+..
T Consensus 74 Ga~TGevS~~mL~d~---G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~ 121 (255)
T PTZ00333 74 GAFTGEISAEMLKDL---GINWTILGHSERRQYFGETNEIVAQKVKNALEN 121 (255)
T ss_pred CCccCcCCHHHHHHc---CCCEEEECcccccCcCCCCcHHHHHHHHHHHHC
Confidence 566999998766555 99999999985433331 4566666665544
No 24
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=27.17 E-value=2.3e+02 Score=29.96 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=22.0
Q ss_pred CCccchHHHHhcccccCCceEEEcCCce
Q psy18093 48 SDLGTYLSVLYSSPRKYDSVTVAKCPVA 75 (411)
Q Consensus 48 ~~l~~~~~vl~~a~~~~~~~ii~hhPl~ 75 (411)
+...+.+++++.|.+...++|+--=+++
T Consensus 26 D~~~~f~eil~~a~~~~vD~VLiaGDLF 53 (405)
T TIGR00583 26 DSWNTFEEVLQIAKEQDVDMILLGGDLF 53 (405)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCccC
Confidence 3445678999999999999888766763
No 25
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=25.18 E-value=77 Score=30.52 Aligned_cols=43 Identities=28% Similarity=0.271 Sum_probs=28.5
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHHHHHH-HHHHHHHHhc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQT-MHTLLQIRLW 390 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~~~-l~~~L~~~~~ 390 (411)
-|-.|||+|---..|+ |...+.+||+ ||-|-++ +...++..+.
T Consensus 65 ~Ga~TGevS~~mLkd~---G~~~viiGHS--ERRf~Etdi~~Kv~~a~~ 108 (205)
T TIGR00419 65 SGAHTGEISAEMLKDI---GAKGTLINHS--ERRMKLADIEKKIARLKE 108 (205)
T ss_pred CCCccCcCCHHHHHHc---CCCEEEECcc--cCCCCccHHHHHHHHHHH
Confidence 4566999997766555 9999999997 5543332 4444444443
No 26
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=24.92 E-value=89 Score=30.71 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=30.6
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHHHH---HHHHHHHHHHhcc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFL---QTMHTLLQIRLWH 391 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~---~~l~~~L~~~~~~ 391 (411)
-|-.|||+|---..|+ |..-+.+||++.-+.|- +.+...++..+..
T Consensus 68 ~Ga~TGevS~~mL~d~---G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~ 116 (244)
T PF00121_consen 68 SGAFTGEVSAEMLKDL---GCKYVIIGHSERRQYFGETDEIINKKVKAALEN 116 (244)
T ss_dssp SBS-TTHHBHHHHHHT---TESEEEESCHHHHHHST-BHHHHHHHHHHHHHT
T ss_pred hcccHHHhHHHHHHHh---hCCEEEeccccccCccccccHHHHHHHHHHHHC
Confidence 3666999997766555 99999999985433333 3566666666554
No 27
>PRK14566 triosephosphate isomerase; Provisional
Probab=24.21 E-value=49 Score=33.11 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=22.4
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhch
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSE 374 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE 374 (411)
-|-.|||++---..|+ |...+.+||++.-
T Consensus 79 ~Ga~TGevS~~mL~d~---G~~~viiGHSERR 107 (260)
T PRK14566 79 FGAYTGEVSGQMLKDA---GCRYVIIGHSERR 107 (260)
T ss_pred CCCccCccCHHHHHHc---CCCEEEECccccc
Confidence 4566999997666555 9999999998543
No 28
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=23.72 E-value=50 Score=34.33 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=24.5
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHHH
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPF 377 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~ 377 (411)
-|-.|||+|---..|+ |...+.+||++.-+.|
T Consensus 79 ~Ga~TGEVS~~mL~d~---G~~~viiGHSERR~~f 110 (355)
T PRK14905 79 KGQFTGEISPLMLKEL---GIELVMIGHSERRHVL 110 (355)
T ss_pred CCCccCcCCHHHHHHc---CCCEEEECcccccCcc
Confidence 4667999997776666 9999999998543344
No 29
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=22.31 E-value=1.3e+02 Score=23.68 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=20.5
Q ss_pred ccccchHHHHHHHHcCCeEEEc
Q psy18093 347 TGEMSHHDVLDATHRGTTVLLL 368 (411)
Q Consensus 347 TGe~~~h~~lda~~~g~~vi~~ 368 (411)
+|.|...-.....++|+.|+..
T Consensus 59 ~~~iG~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 59 CGGIGEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp ESCSCHHHHHHHHHTTSEEEES
T ss_pred EeCCCHHHHHHHHHCCCEEEEc
Confidence 9999999998888999999986
No 30
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=22.30 E-value=81 Score=31.24 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=25.1
Q ss_pred ecccCcccccchHHHHHHHHcCCeEEEcCChhchHHHHH
Q psy18093 341 LILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQ 379 (411)
Q Consensus 341 ~~~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~~ 379 (411)
+.||. |+-+= +.|..+.|.-+||+||.++|.-+..
T Consensus 173 iaLGP-TAtVL---ayDL~~~G~qaiDiGHiD~EYew~~ 207 (225)
T PF08759_consen 173 IALGP-TATVL---AYDLSKLGYQAIDIGHIDSEYEWFK 207 (225)
T ss_pred EecCC-cchhh---HHHHHhcCCeeEecccchHHHHHHH
Confidence 56676 44432 4456688999999999999976543
No 31
>KOG3087|consensus
Probab=21.69 E-value=25 Score=34.69 Aligned_cols=49 Identities=27% Similarity=0.346 Sum_probs=33.3
Q ss_pred CceeEEEEEecC--ccchhhcCCCcEEEecCCCCCeeeeecccCCccceeeeeeeee
Q psy18093 284 IMINSIAVCAGS--GGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVY 338 (411)
Q Consensus 284 ~~I~~iAvc~Gs--G~~ll~~~~aD~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (411)
.++..+.+--|. ++.+-+++++|+|++. --++|+|+.++.=++|++-.|
T Consensus 151 ~~~~~~lIdfgls~~s~~~EDKgVDLYVlE------rA~lsTh~~~~~~fe~~~~~Y 201 (229)
T KOG3087|consen 151 NQITPILIDFGLSSVSRLPEDKGVDLYVLE------RAVLSTHDKKALLFEGFLEGY 201 (229)
T ss_pred CcCceEEEeecchhcccCcccccceeeeeh------HhHhccCcccHHHHHHHHHHH
Confidence 345556665554 4566677899999933 136899999998666666555
No 32
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=21.68 E-value=83 Score=29.88 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=32.1
Q ss_pred CCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCce-EEeccc
Q psy18093 48 SDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIA-VYSPHT 110 (411)
Q Consensus 48 ~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIA-LYSaHT 110 (411)
+++.-.++.|.++.+ .-.+++.|||+.- .+... ......+++...+.+.++. +++-|+
T Consensus 152 ~Q~~wL~~~L~~~~~-~~~iv~~H~P~~~---~~~~~-~~~~~~~~l~~l~~~~~v~~vl~GH~ 210 (277)
T cd07378 152 EQLAWLEKTLAASTA-DWKIVVGHHPIYS---SGEHG-PTSCLVDRLLPLLKKYKVDAYLSGHD 210 (277)
T ss_pred HHHHHHHHHHHhcCC-CeEEEEeCcccee---CCCCC-CcHHHHHHHHHHHHHcCCCEEEeCCc
Confidence 334446667766655 4569999999854 22111 1112234444555567765 566665
No 33
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=20.54 E-value=1.9e+02 Score=27.69 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=33.8
Q ss_pred cCCCccchHHHHhcccccCC--ceEEEcCCceeeccCCCCcc---CCCChHHHHHHHHHHcCce-EEeccccc
Q psy18093 46 KDSDLGTYLSVLYSSPRKYD--SVTVAKCPVALLWRVNGPGV---TNDKWKERVVSTCLAHNIA-VYSPHTTW 112 (411)
Q Consensus 46 ~~~~l~~~~~vl~~a~~~~~--~~ii~hhPl~~~~~~pLK~I---t~d~~K~rvv~~LIkngIA-LYSaHTNL 112 (411)
+++++.-.++.|.++.+++. .+++.|||+.. .....- ......+++...+.+.++. +++-|+=.
T Consensus 135 ~~~q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~---~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~ 204 (294)
T cd00839 135 GSPQYDWLEADLAKVDRSKTPWIIVMGHRPMYC---SNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHA 204 (294)
T ss_pred CcHHHHHHHHHHHHhcccCCCeEEEEeccCcEe---cCccccccchhHHHHHHHHHHHHHhCCCEEEEcccee
Confidence 34444557777777766443 46677888855 221110 0112233444445567875 57767643
No 34
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=20.49 E-value=98 Score=29.83 Aligned_cols=64 Identities=17% Similarity=0.074 Sum_probs=33.9
Q ss_pred CCccchHHHHhcccccCC-ceEEEcCCceeeccCCC-CccCCCChHHHHHHHHHH-cCc-eEEeccccccCC
Q psy18093 48 SDLGTYLSVLYSSPRKYD-SVTVAKCPVALLWRVNG-PGVTNDKWKERVVSTCLA-HNI-AVYSPHTTWDAI 115 (411)
Q Consensus 48 ~~l~~~~~vl~~a~~~~~-~~ii~hhPl~~~~~~pL-K~It~d~~K~rvv~~LIk-ngI-ALYSaHTNLDaa 115 (411)
+++.-.++.|.++.+++. -++++|||+.- ... ..-...+ .+++...+-+ .++ .+++-|+=.+..
T Consensus 163 ~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~---~~~~~~~~~~~-~~~~~~ll~~~~~V~~v~~GH~H~~~~ 230 (267)
T cd07396 163 EQLQWLRNELQEADANGEKVIIFSHFPLHP---ESTSPHGLLWN-HEEVLSILRAYGCVKACISGHDHEGGY 230 (267)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeccCCC---CCCCccccccC-HHHHHHHHHhCCCEEEEEcCCcCCCCc
Confidence 444457777777664433 47888888743 221 1111111 2444444444 365 578878776653
No 35
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=20.24 E-value=1e+02 Score=29.75 Aligned_cols=73 Identities=11% Similarity=0.035 Sum_probs=36.1
Q ss_pred ecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHc-Cc-eEEecccc--ccCCCCCh
Q psy18093 45 IKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAH-NI-AVYSPHTT--WDAIQGGI 119 (411)
Q Consensus 45 ~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkn-gI-ALYSaHTN--LDaa~gGV 119 (411)
+++++++-.++.|.++.++ ..+|+.|||.+..-..........+ .+++...+.++ ++ .+++-|+= ++...+|+
T Consensus 139 l~~~ql~wL~~~L~~~~~~-~~vv~~hH~P~~~~~~~~d~~~l~n-~~~l~~ll~~~~~v~~vl~GH~H~~~~~~~~gi 215 (275)
T PRK11148 139 LSEYQLEWLERKLADAPER-HTLVLLHHHPLPAGCAWLDQHSLRN-AHELAEVLAKFPNVKAILCGHIHQELDLDWNGR 215 (275)
T ss_pred eCHHHHHHHHHHHhhCCCC-CeEEEEcCCCCCCCcchhhccCCCC-HHHHHHHHhcCCCceEEEecccChHHhceECCE
Confidence 3445666678888877554 3466677655331000011111122 24544444454 66 57785554 44444555
Done!