Query psy18093
Match_columns 411
No_of_seqs 221 out of 1557
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 22:24:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nyd_A UPF0135 protein SA1388; 100.0 7.4E-60 2.5E-64 471.7 15.3 280 39-411 39-370 (370)
2 2gx8_A NIF3-related protein; s 100.0 1.8E-59 6.2E-64 472.8 17.8 282 39-411 63-397 (397)
3 2fyw_A Conserved hypothetical 100.0 2.9E-51 1E-55 391.2 18.6 226 40-411 38-267 (267)
4 2yyb_A Hypothetical protein TT 100.0 1E-47 3.5E-52 362.9 15.3 206 40-408 36-242 (242)
5 1nmo_A Hypothetical protein YB 100.0 1.4E-45 4.8E-50 348.9 16.1 210 39-408 34-247 (247)
6 3rxy_A NIF3 protein; structura 99.6 2.5E-16 8.7E-21 152.4 6.5 70 281-387 190-267 (278)
7 2nyd_A UPF0135 protein SA1388; 97.4 1.2E-05 4E-10 80.8 -2.5 91 81-214 39-130 (370)
8 2gx8_A NIF3-related protein; s 97.1 5.7E-05 2E-09 76.5 -0.6 92 80-213 62-154 (397)
9 2fyw_A Conserved hypothetical 95.3 0.0091 3.1E-07 56.8 3.4 92 80-213 36-128 (267)
10 2yyb_A Hypothetical protein TT 92.8 0.032 1.1E-06 52.4 1.4 86 81-212 35-124 (242)
11 1nmo_A Hypothetical protein YB 90.7 0.047 1.6E-06 51.4 0.0 87 80-209 33-121 (247)
12 2btm_A TIM, protein (triosepho 35.0 24 0.00083 33.6 3.3 26 344-372 71-96 (252)
13 1aw2_A Triosephosphate isomera 34.6 25 0.00085 33.6 3.3 27 343-372 73-99 (256)
14 1tre_A Triosephosphate isomera 34.6 25 0.00085 33.6 3.3 29 343-376 71-99 (255)
15 2jgq_A Triosephosphate isomera 33.3 23 0.00079 33.4 2.8 44 343-391 65-113 (233)
16 3m9y_A Triosephosphate isomera 32.7 23 0.0008 33.8 2.8 27 343-372 74-100 (254)
17 2vxn_A Triosephosphate isomera 32.3 24 0.00082 33.6 2.8 29 343-376 72-100 (251)
18 2yc6_A Triosephosphate isomera 32.2 24 0.00083 33.7 2.8 29 343-376 72-100 (257)
19 4fgs_A Probable dehydrogenase 32.1 1.2E+02 0.0042 28.5 7.6 30 374-407 86-115 (273)
20 1o5x_A TIM, triosephosphate is 32.1 25 0.00085 33.5 2.8 29 343-376 71-99 (248)
21 3th6_A Triosephosphate isomera 32.1 24 0.00084 33.5 2.8 27 343-372 71-97 (249)
22 1r2r_A TIM, triosephosphate is 32.0 24 0.00084 33.5 2.8 44 343-391 71-119 (248)
23 1m6j_A TIM, TPI, triosephospha 31.9 24 0.00084 33.7 2.8 29 343-376 78-106 (261)
24 2j27_A Triosephosphate isomera 31.5 25 0.00086 33.5 2.8 29 343-376 71-99 (250)
25 1ney_A TIM, triosephosphate is 31.1 26 0.00089 33.4 2.8 27 343-372 70-96 (247)
26 1w0m_A TIM, triosephosphate is 31.1 46 0.0016 31.0 4.5 44 343-390 69-112 (226)
27 1yya_A Triosephosphate isomera 30.7 25 0.00087 33.4 2.7 29 343-376 70-98 (250)
28 1hg3_A Triosephosphate isomera 29.3 43 0.0015 31.2 3.9 44 343-390 72-115 (225)
29 3qst_A Triosephosphate isomera 28.5 26 0.00088 33.5 2.3 27 343-372 73-99 (255)
30 1b9b_A TIM, protein (triosepho 28.3 26 0.00089 33.5 2.3 29 343-376 72-100 (255)
31 1mo0_A TIM, triosephosphate is 27.6 32 0.0011 33.3 2.8 29 343-376 90-118 (275)
32 3kxq_A Triosephosphate isomera 22.8 1.2E+02 0.004 29.4 5.7 46 343-391 96-144 (275)
33 3ta6_A Triosephosphate isomera 22.8 1E+02 0.0035 29.6 5.3 45 344-391 77-124 (267)
34 2h6r_A Triosephosphate isomera 21.9 81 0.0028 28.5 4.2 41 343-387 66-106 (219)
35 2i9e_A Triosephosphate isomera 20.1 47 0.0016 31.8 2.3 46 343-391 70-118 (259)
No 1
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=100.00 E-value=7.4e-60 Score=471.68 Aligned_cols=280 Identities=18% Similarity=0.240 Sum_probs=208.5
Q ss_pred ccceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccCCCCC
Q psy18093 39 TSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGG 118 (411)
Q Consensus 39 t~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDaa~gG 118 (411)
.-++||+. +|.|++||++|+++++++||+|||++| +|+++++.+++ +|++.+||+|||+|||+|||||++++|
T Consensus 39 ~V~~Vl~a---lD~t~~Vv~eAi~~~adlIItHHPlif---~~~k~i~~~~~-~r~i~~li~~~Ialya~HTnlD~~~~G 111 (370)
T 2nyd_A 39 EVTGVLTA---LDCTLEVVNEAIEKGYNTIISHHPLIF---KGVTSLKANGY-GLIIRKLIQHDINLIAMHTNLDVNPYG 111 (370)
T ss_dssp BCCCEEEE---SSCCHHHHHHHHHHTCCEEEESSCSSC---SCCSCCCSSTH-HHHHHHHHHTTCEEEECCHHHHTSTTS
T ss_pred ccCEEEEE---EcCCHHHHHHHHHCCCCEEEECCCccc---CCccccCcCCH-HHHHHHHHHCCCeEEEeechhhccCCc
Confidence 34567777 788999999999999999999999998 99999999999 999999999999999999999999999
Q ss_pred hHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceecccccccc---
Q psy18093 119 INDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGG--- 195 (411)
Q Consensus 119 VNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g--- 195 (411)
+|||||+.|||++.++|.|... .+.|+++|+|.++.+.++++++++|+|.+|.|+ ||+|...+.|
T Consensus 112 vNd~LA~~Lgl~~~~~l~~~~~-----------~~~kl~v~vP~~~~~~v~~al~~aGag~ig~Y~-~csf~~~G~G~F~ 179 (370)
T 2nyd_A 112 VNMMLAKVMGLKNISIINNQQD-----------VYYKVQTYIPKDNVGPFKDKLSENGLAQEGNYE-YCFFESEGRGQFK 179 (370)
T ss_dssp HHHHHHHHTTCEEEEECSEEEE-----------EEEEEC-----------------------------------------
T ss_pred HHHHHHHHcCCCcccccCcccc-----------ccceeEEecchhhHHHHHHHHHhcccccccccc-cceecccccceec
Confidence 9999999999999999987532 377999999999999999999999999999999 9999975444
Q ss_pred ----------------------------------HHHHHHhhcCCCc-----cccCCCC------CCeeeccCCCHHHhh
Q psy18093 196 ----------------------------------INDWLASIYNISE-----YYPLVPS------KPEKFNSMIAISHKI 230 (411)
Q Consensus 196 ----------------------------------~~~~l~~~~~~~~-----~~~l~~~------~~~~l~~~i~~~~~i 230 (411)
+.+.|.+ .|||| .+|+.+. ..++|++|+++++|+
T Consensus 180 p~~~a~P~ig~~g~~~~v~e~rie~i~~~~~~~~v~~al~~-~hpyee~ayd~~~l~~~~~~GlGriG~L~~p~tl~~~~ 258 (370)
T 2nyd_A 180 PVGEANPTIGQIDKIEDVDEVKIEFMIDAYQKSRAEQLIKQ-YHPYETPVFDFIEIKQTSLYGLGVMAEVDNQMTLEDFA 258 (370)
T ss_dssp -----------------------CEEECSTHHHHHHHHHCC------CCCCCEEEEEEEEEEESCEEEEEEEEEEHHHHH
T ss_pred cccccCCccccccccccccceEEEEEechhhHHHHHHHHHh-hCCccccccccccccccCCCCeEEEEEcCCCCCHHHHH
Confidence 2222222 45554 3343211 237788899999999
Q ss_pred cHhhHHHhcC-CcEEEeccCCcccccccccCchhhhhhhhcccCCCCCCCcccCCceeEEEEEecCccchhhc---CCCc
Q psy18093 231 NETDVVQHLT-HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRG---KKAD 306 (411)
Q Consensus 231 ~~~~v~~~L~-~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~~g~~~~~~~~~I~~iAvc~GsG~~ll~~---~~aD 306 (411)
+ +||++|+ +.+|++++ .+++|+|||||+|||++++.. ++||
T Consensus 259 ~--~vk~~l~~~~vr~~g~---------------------------------~~~~I~~VAvc~GsG~~~i~~a~~~gaD 303 (370)
T 2nyd_A 259 A--DIKSKLNIPSVRFVGE---------------------------------SNQKIKRIAIIGGSGIGYEYQAVQQGAD 303 (370)
T ss_dssp H--HHHHHTTCSCCEEESC---------------------------------TTCEEEEEEECCSCCTTSHHHHHHTTCS
T ss_pred H--HHHHHcCCCceEEecC---------------------------------CCCcccEEEEEcCCCHHHHHHHHHcCCC
Confidence 9 9999999 88999863 367899999999999999975 4999
Q ss_pred EEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchHHHHHHHHcCCeEEEcCChhchHHHHHHHHHHHH
Q psy18093 307 LYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQ 386 (411)
Q Consensus 307 ~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~ 386 (411)
+|| |||+|||+++||.++|++|||+|||.|| ++++.|.++|+
T Consensus 304 vyI-------------------------------------TGD~~~H~~~~A~~~gi~vid~GH~~tE-~~~~~l~~~L~ 345 (370)
T 2nyd_A 304 VFV-------------------------------------TGDIKHHDALDAKIHGVNLIDINHYSEY-VMKEGLKTLLM 345 (370)
T ss_dssp EEE-------------------------------------ESCCCHHHHHHHHHTTCCEEECCGGGGG-GHHHHHHHHHH
T ss_pred EEE-------------------------------------eCCccHHHHHHHHHCCCcEEEcCchHHH-HHHHHHHHHHH
Confidence 999 9999999999999999999999999999 99999999999
Q ss_pred HHhccCCCcEEEEEEcCCCCCceeC
Q psy18093 387 IRLWHYLDWLKIYVSKADKDPIGYV 411 (411)
Q Consensus 387 ~~~~~~~~~~~i~~s~~~~dP~~~v 411 (411)
++|+...+.+++++|+.++|||.|+
T Consensus 346 ~~~~~~~~~v~v~~s~~~~dP~~~~ 370 (370)
T 2nyd_A 346 NWFNIEKINIDVEASTINTDPFQYI 370 (370)
T ss_dssp HHHHHTTCCCCEEECCCCCCSCEEC
T ss_pred HHhcccCCceEEEEEecCCCCceEC
Confidence 9997555569999999999999985
No 2
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=100.00 E-value=1.8e-59 Score=472.76 Aligned_cols=282 Identities=23% Similarity=0.296 Sum_probs=248.8
Q ss_pred ccceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccCCCCC
Q psy18093 39 TSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGG 118 (411)
Q Consensus 39 t~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDaa~gG 118 (411)
.-++||+. +|.|++||++|+++++++||+|||++| +|+|+++.+++++|++.+||+|||+|||+|||||++++|
T Consensus 63 ~V~~Vl~a---lD~t~~Vv~eAi~~gadlIItHHPlif---~~lk~i~~~~~~~r~i~~li~~~Iavya~HTnlD~~~~G 136 (397)
T 2gx8_A 63 PVRHVLIA---LDVTEEVVDEAIQLGANVIIAHHPLIF---NPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKGG 136 (397)
T ss_dssp BCCEEEEE---SSCCHHHHHHHHHHTCCEEEESSCSCC---SCCSCCCTTSHHHHHHHHHHHTTCEEEECCHHHHHSTTS
T ss_pred ccCEEEEE---EcCCHHHHHHHHHCCCCEEEECCcccc---CCccccCcCcHHHHHHHHHHHCCCeEEEeechhhcCCCC
Confidence 34577777 788999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceeccccccc----
Q psy18093 119 INDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQG---- 194 (411)
Q Consensus 119 VNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~---- 194 (411)
+|||||+.|||++.++|.|.... .+.|+++|+|.++.+.++++++++|+|.++.|+ ||+|...+.
T Consensus 137 vNd~LA~~LGl~~~~~L~~~~~~----------~~~Kl~v~vp~~~~~~v~~al~~aGag~ig~y~-~csf~~~G~G~F~ 205 (397)
T 2gx8_A 137 VNDLLAEALGLQNTEVLAPTYAE----------EMKKVVVFVPVTHAEEVRKALGDAGAGHIGNYS-HCTFSSEGTGTFV 205 (397)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEEE----------EEEEEEEEECHHHHHHHHHHHHHTTTTCBTTEE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHcCCCcccccCccccc----------ccceeeEeccchhhHHHHHHhhhcccccccccc-ccccccccceeec
Confidence 99999999999999999876432 578999999999999999999999999999999 999996332
Q ss_pred ---------------------------------cHHHHHHhhcCCCc-----cccCCCC-------CCeeeccCCCHHHh
Q psy18093 195 ---------------------------------GINDWLASIYNISE-----YYPLVPS-------KPEKFNSMIAISHK 229 (411)
Q Consensus 195 ---------------------------------g~~~~l~~~~~~~~-----~~~l~~~-------~~~~l~~~i~~~~~ 229 (411)
.+.+.|.+ .+||| .+|+... ..++|++|+++++|
T Consensus 206 p~~~a~P~iG~~g~~~~v~e~rie~i~p~~~~~~v~~al~~-~HPyee~ayd~~~l~~~~~~~GlGriG~L~~p~tl~~f 284 (397)
T 2gx8_A 206 PQEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIKAMVT-AHPYEEVAYDVYPLDNKGETLGLGKIGYLQEEMTLGQF 284 (397)
T ss_dssp EC-----------CCEEEEEEEEEEEEEGGGHHHHHHHHHH-HSSSSSCCEEEEEEEEEEEEEEEEEEEEEEEEEEHHHH
T ss_pred cccCCCCccCCcCcccccceeEEEEEecHHHHHHHHHHHHH-hCCcccccccccccccccccCCeEEEEEcCCCCCHHHH
Confidence 23344444 67765 3444311 23678899999999
Q ss_pred hcHhhHHHhcC-CcEEEeccCCcccccccccCchhhhhhhhcccCCCCCCCcccCCceeEEEEEecCccchhhc---CCC
Q psy18093 230 INETDVVQHLT-HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRG---KKA 305 (411)
Q Consensus 230 i~~~~v~~~L~-~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~~g~~~~~~~~~I~~iAvc~GsG~~ll~~---~~a 305 (411)
++ +||++|+ +.+|++++ .+++|+|||||+|||++++.. ++|
T Consensus 285 ~~--~vk~~L~~~~vr~~g~---------------------------------~~~~I~rVAvc~GSG~~~i~~A~~~ga 329 (397)
T 2gx8_A 285 AE--HVKQSLDVKGARVVGK---------------------------------LDDKVRKVAVLGGDGNKYINQAKFKGA 329 (397)
T ss_dssp HH--HHHHHTTCSCCEEESC---------------------------------TTSEEEEEEEEEEECGGGHHHHHHTTC
T ss_pred HH--HHHHHcCCCceEEECC---------------------------------CCCceeEEEEEcCCcHHHHHHHHHCCC
Confidence 99 9999999 88999863 367899999999999999975 499
Q ss_pred cEEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchHHHHHHHHcCCeEEEcCChhchHHHHHHHHHHH
Q psy18093 306 DLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLL 385 (411)
Q Consensus 306 D~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L 385 (411)
|+|| |||+|||+++||.++|++|||+|||.|| ++++.|.++|
T Consensus 330 DvyI-------------------------------------TGD~~~H~a~dA~e~Gi~vId~GH~~sE-~~~~~l~~~L 371 (397)
T 2gx8_A 330 DVYV-------------------------------------TGDMYYHVAHDAMMLGLNIVDPGHNVEK-VMKQGVQKQL 371 (397)
T ss_dssp SEEE-------------------------------------EECCCHHHHHHHHHHTCEEEECCGGGGG-HHHHHHHHHH
T ss_pred CEEE-------------------------------------ecCCcHHHHHHHHHCCCcEEEcCchHHH-HHHHHHHHHH
Confidence 9999 9999999999999999999999999999 9999999999
Q ss_pred HHHhccCCCcEEEEEEcCCCCCceeC
Q psy18093 386 QIRLWHYLDWLKIYVSKADKDPIGYV 411 (411)
Q Consensus 386 ~~~~~~~~~~~~i~~s~~~~dP~~~v 411 (411)
+++|+...+.+++.+|+.++|||.|+
T Consensus 372 ~~~~~~~~~~v~v~~s~~~~dP~~~~ 397 (397)
T 2gx8_A 372 QEKVDAKKLNVHIHASQLHTDPFIFV 397 (397)
T ss_dssp HHHHHHTTCCCEEEECCCCCCCCCCC
T ss_pred HHHhccCCCceEEEEEecCCCCceEC
Confidence 99997545569999999999999985
No 3
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=100.00 E-value=2.9e-51 Score=391.17 Aligned_cols=226 Identities=23% Similarity=0.294 Sum_probs=199.8
Q ss_pred cceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccCCCCCh
Q psy18093 40 STHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGI 119 (411)
Q Consensus 40 ~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDaa~gGV 119 (411)
-++|+++ +|.+++||++|+++++++||+|||++| +|+++++.+++++|++.+|++|||+|||+|||||++++|+
T Consensus 38 V~~I~~a---lD~t~~vi~eAi~~gadlIitHHP~~f---~~~~~~~~~~~~~~~i~~li~~~I~lya~Ht~lD~~~~G~ 111 (267)
T 2fyw_A 38 IQRVMVA---LDIREETVAEAIEKGVDLIIVKHAPIF---RPIKDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVENGL 111 (267)
T ss_dssp CSEEEEE---SCCCHHHHHHHHHTTCSEEEESSCSCC---SCCCCCCTTSHHHHHHHHHHHTTCEEEECSHHHHHSTTSH
T ss_pred cCEEEEE---EcCCHHHHHHHHHCCCCEEEECCcccc---CCccccccCchHHHHHHHHHHCCCeEEEeeccccccCCCH
Confidence 4567766 688999999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceeccccccccHHHH
Q psy18093 120 NDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDW 199 (411)
Q Consensus 120 NDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~~~ 199 (411)
|+|||+.||+++.+++.|.... .++|+++
T Consensus 112 n~~La~~Lgl~~~~~l~~~~~~---------~g~G~ig------------------------------------------ 140 (267)
T 2fyw_A 112 NDWFCQMLGIEETTYLQETGPE---------RGIGRIG------------------------------------------ 140 (267)
T ss_dssp HHHHHHHHTCEEEEEEEEEETT---------EEEEEEE------------------------------------------
T ss_pred HHHHHHHcCCCcccccccCCCC---------CCeEEEE------------------------------------------
Confidence 9999999999999988753211 1567763
Q ss_pred HHhhcCCCccccCCCCCCeeeccCCCHHHhhcHhhHHHhcC-CcEEEeccCCcccccccccCchhhhhhhhcccCCCCCC
Q psy18093 200 LASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLT-HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHL 278 (411)
Q Consensus 200 l~~~~~~~~~~~l~~~~~~~l~~~i~~~~~i~~~~v~~~L~-~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~~g~~ 278 (411)
++ ++++++++++ +|++.|+ +.+|++.+.. |
T Consensus 141 -------------------~l-~~~t~~el~~--~vk~~l~~~~vr~~~~~~-------------------------g-- 171 (267)
T 2fyw_A 141 -------------------NI-QPQTFWELAQ--QVKQVFDLDSLRMVHYQE-------------------------D-- 171 (267)
T ss_dssp -------------------EE-EEEEHHHHHH--HHHHHTTCSCCEEECSCT-------------------------T--
T ss_pred -------------------Ee-ccCCHHHHHH--HHHHHcCCCeEEEEeccC-------------------------C--
Confidence 67 8899999999 9999999 8889872100 0
Q ss_pred CcccCCceeEEEEEecCccchhhc---CCCcEEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchHHH
Q psy18093 279 SKENEIMINSIAVCAGSGGELLRG---KKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDV 355 (411)
Q Consensus 279 ~~~~~~~I~~iAvc~GsG~~ll~~---~~aD~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h~~ 355 (411)
+.+++|+|||||+|||+++++. ++||+|| |||++||++
T Consensus 172 --~~~~~I~rVAv~~GsG~~~~~~a~~~gaD~~I-------------------------------------TGd~~~h~~ 212 (267)
T 2fyw_A 172 --DLQKPISRVAICGGSGQSFYKDALAKGADVYI-------------------------------------TGDIYYHTA 212 (267)
T ss_dssp --GGGSEEEEEEEESSSCGGGHHHHHHTTCSEEE-------------------------------------ESCCCHHHH
T ss_pred --CCCCceeEEEEEcCCCHHHHHHHHHcCCCEEE-------------------------------------EccCcHHHH
Confidence 2356799999999999999986 4899999 999999999
Q ss_pred HHHHHcCCeEEEcCChhchHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCCceeC
Q psy18093 356 LDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV 411 (411)
Q Consensus 356 lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~~~~~~~~~~~~i~~s~~~~dP~~~v 411 (411)
++|.+.|+++|++||| ||++|++.|.++|+++|+...+++++.+|+.++|||.|+
T Consensus 213 ~~A~e~gi~~i~~GH~-tE~~~~~~l~~~L~~~~~~~~~~v~v~~~~~~~~P~~~~ 267 (267)
T 2fyw_A 213 QDMLSDGLLALDPGHY-IEVIFVEKIAALLSQWKEDKGWSIDILPSQASTNPFHHI 267 (267)
T ss_dssp HHHHHTTCEEEECCGG-GGGHHHHHHHHHHHHHHHHHTCCCEEEECCCCCCCEEEC
T ss_pred HHHHHCCCeEEECCcH-HHHHHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCceEC
Confidence 9999999999999999 999999999999999997544569999999999999985
No 4
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=100.00 E-value=1e-47 Score=362.87 Aligned_cols=206 Identities=19% Similarity=0.185 Sum_probs=184.2
Q ss_pred cceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccCCCC-C
Q psy18093 40 STHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQG-G 118 (411)
Q Consensus 40 ~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDaa~g-G 118 (411)
=++|+++ +|.+++++++|+++++++||+|||++| |++++ ..++++|++.+|++|||+|||+|||||++++ |
T Consensus 36 V~~I~~a---lD~t~~vi~eAi~~~adlIitHHp~~f----~~~~~-~~~~~~~~i~~li~~~I~ly~~Ht~lD~~~~~G 107 (242)
T 2yyb_A 36 VRKVGAA---VDAGEAIFRKALEEEVDFLIVHHGLFW----GKPFP-IVGHHKRRLETLFQGGINLYAAHLPLDAHEEVG 107 (242)
T ss_dssp CCCEEEE---EECSHHHHHHHHHTTCSEEEEEECSCS----SCCCC-SCHHHHHHHHHHHHTTCEEEECSHHHHHCTTTC
T ss_pred cCEEEEE---EcCCHHHHHHHHHCCCCEEEECCCcCc----Ccccc-cccHHHHHHHHHHHCCCeEEEeccHHhcCCCcC
Confidence 3466766 688999999999999999999999954 77777 5678999999999999999999999999999 9
Q ss_pred hHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceeccccccccHHH
Q psy18093 119 INDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGIND 198 (411)
Q Consensus 119 VNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~~ 198 (411)
+|+|||+.||+++.+++ ++|++
T Consensus 108 ~n~~La~~Lgl~~~~~l----------------~~G~i------------------------------------------ 129 (242)
T 2yyb_A 108 NNFVLARELGLVDLTPW----------------DVGVK------------------------------------------ 129 (242)
T ss_dssp HHHHHHHTTTCCSCCCC----------------STTCC------------------------------------------
T ss_pred HHHHHHHHcCCCCCccc----------------eeEEE------------------------------------------
Confidence 99999999999887654 22333
Q ss_pred HHHhhcCCCccccCCCCCCeeeccCCCHHHhhcHhhHHHhcCCcEEEeccCCcccccccccCchhhhhhhhcccCCCCCC
Q psy18093 199 WLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHL 278 (411)
Q Consensus 199 ~l~~~~~~~~~~~l~~~~~~~l~~~i~~~~~i~~~~v~~~L~~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~~g~~ 278 (411)
++++++++++++++ +|++.|++.+|++++
T Consensus 130 -------------------g~l~~~~t~~~l~~--~vk~~l~~~vr~~g~------------------------------ 158 (242)
T 2yyb_A 130 -------------------GRFPQPTPLLQVAD--RLGQLTGMQPLVHQG------------------------------ 158 (242)
T ss_dssp -------------------CCCCCCSCBSTHHH--HHHHTTSSCCEEEES------------------------------
T ss_pred -------------------EEeCCCcCHHHHHH--HHHHHcccCeEEecC------------------------------
Confidence 35667899999999 999999977888753
Q ss_pred CcccCCceeEEEEEecCccchhhcCCCcEEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchHHHHHH
Q psy18093 279 SKENEIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDA 358 (411)
Q Consensus 279 ~~~~~~~I~~iAvc~GsG~~ll~~~~aD~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h~~lda 358 (411)
.+++|+|||||+|||+++++.++||+|| |||++||++++|
T Consensus 159 ---~~~~i~~VAv~~GsG~~~~~~agaD~~i-------------------------------------TGd~~~h~~~~A 198 (242)
T 2yyb_A 159 ---GLDHVETVILVSGSGTGLLPKVDADLFV-------------------------------------TGEPKHSVFHET 198 (242)
T ss_dssp ---SCSBCCCEEEECSSCGGGGGGCCSSEEE-------------------------------------ESCCCGGGHHHH
T ss_pred ---CCCceeEEEEEcCCCHHHHHHcCCCEEE-------------------------------------EecCCHHHHHHH
Confidence 3567999999999999999999999999 999999999999
Q ss_pred HHcCCeEEEcCChhchHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCCc
Q psy18093 359 THRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPI 408 (411)
Q Consensus 359 ~~~g~~vi~~gH~~sE~~~~~~l~~~L~~~~~~~~~~~~i~~s~~~~dP~ 408 (411)
.+.|+++|++|||.||++|++.|.++|+++|. +++.+++. +|||
T Consensus 199 ~e~gi~~i~~GH~~tE~~~~~~l~~~L~~~~~-----~~v~~~~~-~~p~ 242 (242)
T 2yyb_A 199 FERGLNVIYAGHYDTETFGVKALAAHLEARFG-----LPWVFLDH-PTGL 242 (242)
T ss_dssp HHTTCEEEECCHHHHTTHHHHHHHHHHHHHHC-----CCEEECCC-CCCC
T ss_pred HHCCCeEEECCcHHHHHHHHHHHHHHHHhhcC-----ceEEEecC-CCCC
Confidence 99999999999999999999999999999993 88999998 9996
No 5
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=100.00 E-value=1.4e-45 Score=348.85 Aligned_cols=210 Identities=18% Similarity=0.210 Sum_probs=182.2
Q ss_pred ccceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccCCCC-
Q psy18093 39 TSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQG- 117 (411)
Q Consensus 39 t~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDaa~g- 117 (411)
.-++|+++ +|.+++++++|+++++++||+|||++| +++++++++ .++|++.+|++|||+|||+|||||++++
T Consensus 34 ~V~~I~~~---lD~t~~vi~eAi~~~adlIitHHP~~f--~~~~~~i~~--~~~~~i~~li~~~I~ly~~HtnlD~~~~~ 106 (247)
T 1nmo_A 34 TVQKIVTG---VTASQALLDEAVRLGADAVIVHHGYFW--KGESPVIRG--MKRNRLKTLLANDINLYGWHLPLDAHPEL 106 (247)
T ss_dssp BCCEEEEE---EECCHHHHHHHHHTTCSEEEEEECSCC--TTSCCCCCT--HHHHHHHHHHHTTCEEEECCHHHHHCTTT
T ss_pred ccCEEEEE---EcCCHHHHHHHHhCCCCEEEECCchhc--cCCCccccc--hHHHHHHHHHHCCCEEEEeeechhhCCCC
Confidence 34577777 788999999999999999999999965 677778774 4799999999999999999999999999
Q ss_pred ChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceeccccccccHH
Q psy18093 118 GINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGIN 197 (411)
Q Consensus 118 GVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~ 197 (411)
|+|+|||+.||+++..++. ++|+++
T Consensus 107 G~n~~La~~Lgl~~~~~~~---------------g~G~ig---------------------------------------- 131 (247)
T 1nmo_A 107 GNNAQLAALLGITVMGEIE---------------PLVPWG---------------------------------------- 131 (247)
T ss_dssp SHHHHHHHHHTEEEEEEEE---------------TTEEEE----------------------------------------
T ss_pred CHHHHHHHHcCCCCccccC---------------CeEEEE----------------------------------------
Confidence 9999999999998876542 356663
Q ss_pred HHHHhhcCCCccccCCCCCCeeeccCCCHHHhhcHhhHHHhcCCcEEEeccCCcccccccccCchhhhhhhhcccCCCCC
Q psy18093 198 DWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGH 277 (411)
Q Consensus 198 ~~l~~~~~~~~~~~l~~~~~~~l~~~i~~~~~i~~~~v~~~L~~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~~g~ 277 (411)
+++++++++++++ +|++.|+...++.+++
T Consensus 132 ---------------------~l~~~~t~~~l~~--~vk~~l~~~~~~~g~~---------------------------- 160 (247)
T 1nmo_A 132 ---------------------ELTMPVPGLELAS--WIEARLGRKPLWCGDT---------------------------- 160 (247)
T ss_dssp ---------------------EEEEEECHHHHHH--HHHHHHTSCCEEECTT----------------------------
T ss_pred ---------------------EeCCCCcHHHHHH--HHHHHcCCCeEEECCC----------------------------
Confidence 5667899999999 9999999334555321
Q ss_pred CCcccCCceeEEEEEecCccchhhcC---CCcEEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchHH
Q psy18093 278 LSKENEIMINSIAVCAGSGGELLRGK---KADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHD 354 (411)
Q Consensus 278 ~~~~~~~~I~~iAvc~GsG~~ll~~~---~aD~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h~ 354 (411)
.+++|+|||||+|||+++++.+ +||+|| |||++||+
T Consensus 161 ----~~~~i~~VAv~~GsG~~~~~~a~~~gaD~~i-------------------------------------TGd~~~h~ 199 (247)
T 1nmo_A 161 ----GPEVVQRVAWCTGGGQSFIDSAARFGVDAFI-------------------------------------TGEVSEQT 199 (247)
T ss_dssp ----SCSSEEEEEECSSSCGGGHHHHHHHCCSEEE-------------------------------------ESCCCHHH
T ss_pred ----CcCccCEEEEECCCcHHHHHHHHHcCCCEEE-------------------------------------EcCccHHH
Confidence 1467999999999999999864 999999 99999999
Q ss_pred HHHHHHcCCeEEEcCChhchHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCCc
Q psy18093 355 VLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPI 408 (411)
Q Consensus 355 ~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~~~~~~~~~~~~i~~s~~~~dP~ 408 (411)
+++|.++|+++|++|||.||+++++.|.++|+++|. +++.++.. +||+
T Consensus 200 ~~~a~e~gi~~i~~GH~~tE~~~~~~l~~~L~~~~~-----~~v~~~~~-~~p~ 247 (247)
T 1nmo_A 200 IHSAREQGLHFYAAGHHATERGGIRALSEWLNENTD-----LDVTFIDI-PNPA 247 (247)
T ss_dssp HHHHHHTTCEEEECCHHHHTSHHHHHHHHHHHHHSS-----CEEEECCC-CCCC
T ss_pred HHHHHHCCCeEEEcCCHHHHHHHHHHHHHHHHHhcC-----CcEEEEeC-CCCC
Confidence 999999999999999999999999999999999883 78888885 7875
No 6
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=99.62 E-value=2.5e-16 Score=152.43 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=62.6
Q ss_pred ccCCceeEEEEEecCccch----hhc---CCCcEEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchH
Q psy18093 281 ENEIMINSIAVCAGSGGEL----LRG---KKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHH 353 (411)
Q Consensus 281 ~~~~~I~~iAvc~GsG~~l----l~~---~~aD~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h 353 (411)
+++++++||||+.|+|.+. ++. +|+|+|| |||++|+
T Consensus 190 ~~~~~vgkIaV~~GgGtsG~~~~i~~a~~~GvDt~I-------------------------------------TGe~~~~ 232 (278)
T 3rxy_A 190 AVDQPLGKIAVVHGAGTNGGYAVARAYFDHGVRTVL-------------------------------------YIHIAPE 232 (278)
T ss_dssp CTTSBCCSEEECCSSSSCCHHHHHHHHHHTTCCEEE-------------------------------------ESCCCHH
T ss_pred CCCCcCCEEEEEcCCCCCCcHHHHHHHHHcCCCEEE-------------------------------------EecCchH
Confidence 3578999999999966543 554 5999999 9999999
Q ss_pred HH-HHHHHcCCeEEEcCChhchHHHHHHHHHHHHH
Q psy18093 354 DV-LDATHRGTTVLLLEHSDSERPFLQTMHTLLQI 387 (411)
Q Consensus 354 ~~-lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~~ 387 (411)
.+ ..|.+.|++||.+|||.||.++++.|.+.|++
T Consensus 233 ~~~~~A~E~ginVI~AGHyATEt~Gv~aL~~~Le~ 267 (278)
T 3rxy_A 233 EAERLRREGGGNLIVTGHIASDLVGINRYVQALEE 267 (278)
T ss_dssp HHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEeccchHhHHHHHHHHHHHHH
Confidence 99 88999999999999999999999999999983
No 7
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=97.38 E-value=1.2e-05 Score=80.83 Aligned_cols=91 Identities=18% Similarity=0.107 Sum_probs=61.8
Q ss_pred CCCcc-CCCChHHHHHHHHHHcCceEEeccccccCCCCChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEc
Q psy18093 81 NGPGV-TNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLR 159 (411)
Q Consensus 81 pLK~I-t~d~~K~rvv~~LIkngIALYSaHTNLDaa~gGVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~ 159 (411)
+++++ ..-+..+.++.+|++.|+.+.-.|-++=..+ ++ .+ ... +++|
T Consensus 39 ~V~~Vl~alD~t~~Vv~eAi~~~adlIItHHPlif~~------------~k---~i---~~~----------~~~r---- 86 (370)
T 2nyd_A 39 EVTGVLTALDCTLEVVNEAIEKGYNTIISHHPLIFKG------------VT---SL---KAN----------GYGL---- 86 (370)
T ss_dssp BCCCEEEESSCCHHHHHHHHHHTCCEEEESSCSSCSC------------CS---CC---CSS----------THHH----
T ss_pred ccCEEEEEEcCCHHHHHHHHHCCCCEEEECCCcccCC------------cc---cc---CcC----------CHHH----
Confidence 44443 3456789999999999999999999884321 11 11 000 0011
Q ss_pred cCCCchHhHhhccccCCCCCcccccceeccccccccHHHHHHhhcCCCccccCCC
Q psy18093 160 PLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVP 214 (411)
Q Consensus 160 vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~~~l~~~~~~~~~~~l~~ 214 (411)
.+.++.. ..+++|++||++|+..+|+|+||++.+++.+..|+.+
T Consensus 87 -------~i~~li~----~~Ialya~HTnlD~~~~GvNd~LA~~Lgl~~~~~l~~ 130 (370)
T 2nyd_A 87 -------IIRKLIQ----HDINLIAMHTNLDVNPYGVNMMLAKVMGLKNISIINN 130 (370)
T ss_dssp -------HHHHHHH----TTCEEEECCHHHHTSTTSHHHHHHHHTTCEEEEECSE
T ss_pred -------HHHHHHH----CCCeEEEeechhhccCCcHHHHHHHHcCCCcccccCc
Confidence 1222211 1378999999999999999999999999988776653
No 8
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=97.12 E-value=5.7e-05 Score=76.54 Aligned_cols=92 Identities=23% Similarity=0.232 Sum_probs=61.7
Q ss_pred CCCCcc-CCCChHHHHHHHHHHcCceEEeccccccCCCCChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEE
Q psy18093 80 VNGPGV-TNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLL 158 (411)
Q Consensus 80 ~pLK~I-t~d~~K~rvv~~LIkngIALYSaHTNLDaa~gGVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v 158 (411)
.++++| ..-+..+.++.+|++.|+.+.-.|-++=..+ ++ .+.... ..+|+
T Consensus 62 ~~V~~Vl~alD~t~~Vv~eAi~~gadlIItHHPlif~~------------lk---~i~~~~------------~~~r~-- 112 (397)
T 2gx8_A 62 KPVRHVLIALDVTEEVVDEAIQLGANVIIAHHPLIFNP------------LK---AIHTDK------------AYGKI-- 112 (397)
T ss_dssp SBCCEEEEESSCCHHHHHHHHHHTCCEEEESSCSCCSC------------CS---CCCTTS------------HHHHH--
T ss_pred cccCEEEEEEcCCHHHHHHHHHCCCCEEEECCccccCC------------cc---ccCcCc------------HHHHH--
Confidence 344453 4456789999999999999999998873321 11 111000 01111
Q ss_pred ccCCCchHhHhhccccCCCCCcccccceeccccccccHHHHHHhhcCCCccccCC
Q psy18093 159 RPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLV 213 (411)
Q Consensus 159 ~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~~~l~~~~~~~~~~~l~ 213 (411)
+.++.. ..+++|++||++|+..+|+|+||++.+++.+..|+.
T Consensus 113 ---------i~~li~----~~Iavya~HTnlD~~~~GvNd~LA~~LGl~~~~~L~ 154 (397)
T 2gx8_A 113 ---------IEKCIK----NDIAIYAAHTNVDVAKGGVNDLLAEALGLQNTEVLA 154 (397)
T ss_dssp ---------HHHHHH----TTCEEEECCHHHHHSTTSHHHHHHHHTTCEEEEEEE
T ss_pred ---------HHHHHH----CCCeEEEeechhhcCCCCHHHHHHHHcCCCcccccC
Confidence 222221 137899999999999999999999999998766654
No 9
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=95.32 E-value=0.0091 Score=56.79 Aligned_cols=92 Identities=22% Similarity=0.226 Sum_probs=61.5
Q ss_pred CCCCcc-CCCChHHHHHHHHHHcCceEEeccccccCCCCChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEE
Q psy18093 80 VNGPGV-TNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLL 158 (411)
Q Consensus 80 ~pLK~I-t~d~~K~rvv~~LIkngIALYSaHTNLDaa~gGVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v 158 (411)
.++++| +.-++.+.++.+|+++|+.+.-.|-++=.- | + +.+.... .
T Consensus 36 ~~V~~I~~alD~t~~vi~eAi~~gadlIitHHP~~f~--~----------~---~~~~~~~------------~------ 82 (267)
T 2fyw_A 36 KGIQRVMVALDIREETVAEAIEKGVDLIIVKHAPIFR--P----------I---KDLLASR------------P------ 82 (267)
T ss_dssp SBCSEEEEESCCCHHHHHHHHHTTCSEEEESSCSCCS--C----------C---CCCCTTS------------H------
T ss_pred CccCEEEEEEcCCHHHHHHHHHCCCCEEEECCccccC--C----------c---cccccCc------------h------
Confidence 445553 445678999999999999999999988221 1 1 1111000 0
Q ss_pred ccCCCchHhHhhccccCCCCCcccccceeccccccccHHHHHHhhcCCCccccCC
Q psy18093 159 RPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLV 213 (411)
Q Consensus 159 ~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~~~l~~~~~~~~~~~l~ 213 (411)
....++++.. ..+++|++||+||+..+|+|+||++.+++.+..|+.
T Consensus 83 -----~~~~i~~li~----~~I~lya~Ht~lD~~~~G~n~~La~~Lgl~~~~~l~ 128 (267)
T 2fyw_A 83 -----QNQIYIDLIK----HDIAVYVSHTNIDIVENGLNDWFCQMLGIEETTYLQ 128 (267)
T ss_dssp -----HHHHHHHHHH----TTCEEEECSHHHHHSTTSHHHHHHHHHTCEEEEEEE
T ss_pred -----HHHHHHHHHH----CCCeEEEeeccccccCCCHHHHHHHHcCCCcccccc
Confidence 0111222211 137899999999999999999999999998876653
No 10
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=92.76 E-value=0.032 Score=52.42 Aligned_cols=86 Identities=17% Similarity=0.046 Sum_probs=58.8
Q ss_pred CCCcc-CCCChHHHHHHHHHHcCceEEeccccccCCCC-Ch-HHHHHHHcCCccceecCCCCCcccchhhhhccceeEEE
Q psy18093 81 NGPGV-TNDKWKERVVSTCLAHNIAVYSPHTTWDAIQG-GI-NDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLL 157 (411)
Q Consensus 81 pLK~I-t~d~~K~rvv~~LIkngIALYSaHTNLDaa~g-GV-NDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~ 157 (411)
+++++ +.-++.+.++.+|+++|+.+.-.|-++=. +. -+ .++..
T Consensus 35 ~V~~I~~alD~t~~vi~eAi~~~adlIitHHp~~f-~~~~~~~~~~~--------------------------------- 80 (242)
T 2yyb_A 35 TVRKVGAAVDAGEAIFRKALEEEVDFLIVHHGLFW-GKPFPIVGHHK--------------------------------- 80 (242)
T ss_dssp BCCCEEEEEECSHHHHHHHHHTTCSEEEEEECSCS-SCCCCSCHHHH---------------------------------
T ss_pred ccCEEEEEEcCCHHHHHHHHHCCCCEEEECCCcCc-CcccccccHHH---------------------------------
Confidence 34443 34456789999999999999999988855 21 00 00110
Q ss_pred EccCCCchHhHhhccccCCCCCcccccceeccccccc-cHHHHHHhhcCCCccccC
Q psy18093 158 LRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQG-GINDWLASIYNISEYYPL 212 (411)
Q Consensus 158 v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~-g~~~~l~~~~~~~~~~~l 212 (411)
..++++.. ..+++|++||+||+..+ |+|+||++.+++.+..|+
T Consensus 81 --------~~i~~li~----~~I~ly~~Ht~lD~~~~~G~n~~La~~Lgl~~~~~l 124 (242)
T 2yyb_A 81 --------RRLETLFQ----GGINLYAAHLPLDAHEEVGNNFVLARELGLVDLTPW 124 (242)
T ss_dssp --------HHHHHHHH----TTCEEEECSHHHHHCTTTCHHHHHHHTTTCCSCCCC
T ss_pred --------HHHHHHHH----CCCeEEEeccHHhcCCCcCHHHHHHHHcCCCCCccc
Confidence 01111111 13788999999999999 999999999998876554
No 11
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=90.70 E-value=0.047 Score=51.38 Aligned_cols=87 Identities=14% Similarity=0.028 Sum_probs=58.0
Q ss_pred CCCCcc-CCCChHHHHHHHHHHcCceEEeccccccCCCCChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEE
Q psy18093 80 VNGPGV-TNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLL 158 (411)
Q Consensus 80 ~pLK~I-t~d~~K~rvv~~LIkngIALYSaHTNLDaa~gGVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v 158 (411)
.+++++ +.-++.+.++.+|++.|+.+.-.|-++=... |. +.+...
T Consensus 33 ~~V~~I~~~lD~t~~vi~eAi~~~adlIitHHP~~f~~-~~-------------~~i~~~-------------------- 78 (247)
T 1nmo_A 33 ETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKG-ES-------------PVIRGM-------------------- 78 (247)
T ss_dssp SBCCEEEEEEECCHHHHHHHHHTTCSEEEEEECSCCTT-SC-------------CCCCTH--------------------
T ss_pred CccCEEEEEEcCCHHHHHHHHhCCCCEEEECCchhccC-CC-------------ccccch--------------------
Confidence 455553 3446678999999999999999999885511 11 000000
Q ss_pred ccCCCchHhHhhccccCCCCCcccccceeccccccc-cHHHHHHhhcCCCcc
Q psy18093 159 RPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQG-GINDWLASIYNISEY 209 (411)
Q Consensus 159 ~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~-g~~~~l~~~~~~~~~ 209 (411)
....++++.. ..+++|++||+||+..+ |+|+||++.+++.+.
T Consensus 79 -----~~~~i~~li~----~~I~ly~~HtnlD~~~~~G~n~~La~~Lgl~~~ 121 (247)
T 1nmo_A 79 -----KRNRLKTLLA----NDINLYGWHLPLDAHPELGNNAQLAALLGITVM 121 (247)
T ss_dssp -----HHHHHHHHHH----TTCEEEECCHHHHHCTTTSHHHHHHHHHTEEEE
T ss_pred -----HHHHHHHHHH----CCCEEEEeeechhhCCCCCHHHHHHHHcCCCCc
Confidence 0111122111 13788999999999999 999999999988764
No 12
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=34.98 E-value=24 Score=33.65 Aligned_cols=26 Identities=42% Similarity=0.558 Sum_probs=22.0
Q ss_pred cCcccccchHHHHHHHHcCCeEEEcCChh
Q psy18093 344 GFVTGEMSHHDVLDATHRGTTVLLLEHSD 372 (411)
Q Consensus 344 ~~~TGe~~~h~~lda~~~g~~vi~~gH~~ 372 (411)
|-.|||+|=--..|+ |...+.+||++
T Consensus 71 GA~TGEiS~~mL~d~---G~~~ViiGHSE 96 (252)
T 2btm_A 71 GAYTGEVSPVMLKDL---GVTYVILGHSE 96 (252)
T ss_dssp BSCTTCCCHHHHHHH---TCCEEEESCHH
T ss_pred CCcCCcCCHHHHHHc---CCCEEEeCchh
Confidence 566999998777776 99999999973
No 13
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=34.60 E-value=25 Score=33.63 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=22.4
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChh
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSD 372 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~ 372 (411)
-|-.|||+|---..|+ |...+.+||++
T Consensus 73 ~GA~TGEiS~~mL~d~---G~~~ViiGHSE 99 (256)
T 1aw2_A 73 SGAFTGDMSPAMLKEF---GATHIIIGHSE 99 (256)
T ss_dssp SBSCTTCCCHHHHHHH---TCCEEEESCHH
T ss_pred CCCccCccCHHHHHHc---CCCEEEECchh
Confidence 3566999998777776 99999999973
No 14
>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A
Probab=34.55 E-value=25 Score=33.63 Aligned_cols=29 Identities=38% Similarity=0.517 Sum_probs=23.2
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHH
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERP 376 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~ 376 (411)
-|-.|||+|=--..|+ |...+.+||+ ||-
T Consensus 71 ~GA~TGEiS~~mL~d~---G~~~ViiGHS--ERR 99 (255)
T 1tre_A 71 SGAFTGETSAAMLKDI---GAQYIIIGHS--ERR 99 (255)
T ss_dssp SBSCTTCCCHHHHHHH---TCCEEEESCH--HHH
T ss_pred CCCcCCcCCHHHHHHc---CCCEEEECcc--ccc
Confidence 3556999998777666 9999999997 553
No 15
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Probab=33.30 E-value=23 Score=33.40 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=29.2
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHHH-----HHHHHHHHHHHhcc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPF-----LQTMHTLLQIRLWH 391 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~-----~~~l~~~L~~~~~~ 391 (411)
-|-.|||+|=--..|+ |..-+.+||+ ||-- -+.+..+++..+.+
T Consensus 65 ~GAfTGEiS~~mL~d~---G~~~ViiGHS--ERR~~f~Etd~~v~~Kv~~Al~~ 113 (233)
T 2jgq_A 65 CGAFTGEITSKHLEEL---KIHTLLIGHS--ERRTLLKESPSFLKEKFDFFKSK 113 (233)
T ss_dssp SBSCTTCCBHHHHHHT---TCCEEEECCH--HHHHTTCCCHHHHHHHHHHHHHT
T ss_pred CCCccCccCHHHHHHc---CCCEEEeCch--hhhcccCCCHHHHHHHHHHHHHC
Confidence 4666999997766555 9999999997 5532 12344455444443
No 16
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*
Probab=32.75 E-value=23 Score=33.77 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=21.9
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChh
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSD 372 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~ 372 (411)
-|-.|||+|---..|+ |...+.+||++
T Consensus 74 ~GA~TGEiS~~mL~d~---G~~~ViiGHSE 100 (254)
T 3m9y_A 74 NGAFTGETSPVALADL---GVKYVVIGHSE 100 (254)
T ss_dssp SBSCTTCCCHHHHHHT---TCCEEEESCHH
T ss_pred CCCccCcCCHHHHHHc---CCCEEEECccc
Confidence 3566999997776555 99999999974
No 17
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Probab=32.34 E-value=24 Score=33.63 Aligned_cols=29 Identities=41% Similarity=0.499 Sum_probs=22.9
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHH
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERP 376 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~ 376 (411)
-|-.|||+|=--..|+ |...+.+||+ ||-
T Consensus 72 ~GA~TGEiS~~mL~d~---G~~~ViiGHS--ERR 100 (251)
T 2vxn_A 72 SGAFTGEVSMPILKDI---GVHWVILGHS--ERR 100 (251)
T ss_dssp CSSCTTCCBHHHHHHT---TCCEEEESCH--HHH
T ss_pred CCCCcCcCCHHHHHHc---CCCEEEECch--hhh
Confidence 4666999997766555 9999999997 553
No 18
>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A
Probab=32.24 E-value=24 Score=33.75 Aligned_cols=29 Identities=38% Similarity=0.429 Sum_probs=22.8
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHH
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERP 376 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~ 376 (411)
-|-.|||+|=--..|+ |...+.+||+ ||-
T Consensus 72 ~GAfTGEiS~~mL~d~---G~~~ViiGHS--ERR 100 (257)
T 2yc6_A 72 NGAWTGETSVEMLQDM---GLKHVIVGHS--ERR 100 (257)
T ss_dssp SSSCTTCCCHHHHHHT---TCCEEEESCH--HHH
T ss_pred CcCccCccCHHHHHHc---CCCEEEECch--hhc
Confidence 3556999997776655 9999999997 553
No 19
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=32.10 E-value=1.2e+02 Score=28.46 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCC
Q psy18093 374 ERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDP 407 (411)
Q Consensus 374 E~~~~~~l~~~L~~~~~~~~~~~~i~~s~~~~dP 407 (411)
..--++.+.+.+.++|.. +.|.+..+...+
T Consensus 86 ~~~~v~~~~~~~~~~~G~----iDiLVNNAG~~~ 115 (273)
T 4fgs_A 86 NLAELDRLYEKVKAEAGR----IDVLFVNAGGGS 115 (273)
T ss_dssp CHHHHHHHHHHHHHHHSC----EEEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHHcCC----CCEEEECCCCCC
Confidence 334566777777778865 888887765443
No 20
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*
Probab=32.09 E-value=25 Score=33.48 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=22.6
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHH
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERP 376 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~ 376 (411)
-|-.|||+|=--..|+ |...+.+||+ ||-
T Consensus 71 ~GA~TGEiS~~mL~d~---G~~~ViiGHS--ERR 99 (248)
T 1o5x_A 71 NGSYTGEVSAEIAKDL---NIEYVIIGHF--ERR 99 (248)
T ss_dssp SBSCTTCCCHHHHHHT---TCCEEEECCH--HHH
T ss_pred CCCcCCcCCHHHHHHc---CCCEEEeCCh--hhh
Confidence 3556999997666555 9999999997 553
No 21
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus}
Probab=32.05 E-value=24 Score=33.54 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=21.9
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChh
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSD 372 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~ 372 (411)
-|-.|||+|---..|+ |...+.+||++
T Consensus 71 ~GA~TGEiS~~mL~d~---G~~~ViiGHSE 97 (249)
T 3th6_A 71 QGAFTGEISPGMIKDC---GGQWVILGHSE 97 (249)
T ss_dssp SBSCTTCCCHHHHHHT---TCCEEEESCHH
T ss_pred CCCcccccCHHHHHHc---CCCEEEECchh
Confidence 3556999997776665 99999999974
No 22
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Probab=32.05 E-value=24 Score=33.52 Aligned_cols=44 Identities=32% Similarity=0.336 Sum_probs=28.7
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHHH-----HHHHHHHHHHHhcc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPF-----LQTMHTLLQIRLWH 391 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~-----~~~l~~~L~~~~~~ 391 (411)
-|-.|||+|---..|+ |...+.+||+ ||-- -+.+..+++..+..
T Consensus 71 ~GA~TGEiS~~mL~d~---G~~~ViiGHS--ERR~~f~Etd~~v~~Kv~~Al~~ 119 (248)
T 1r2r_A 71 NGAFTGEISPGMIKDC---GATWVVLGHS--ERRHVFGESDELIGQKVAHALSE 119 (248)
T ss_dssp SBSCTTCCCHHHHHHT---TCCEEEESCH--HHHHTSCCCHHHHHHHHHHHHHT
T ss_pred CCCccCccCHHHHHHc---CCCEEEECCh--hhhcccCCCHHHHHHHHHHHHHC
Confidence 3556999997766555 9999999997 5532 12344454444443
No 23
>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1
Probab=31.89 E-value=24 Score=33.73 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=22.9
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHH
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERP 376 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~ 376 (411)
-|-.|||+|=--..|+ |...+.+||+ ||-
T Consensus 78 ~GAfTGEiS~~mL~d~---G~~~ViiGHS--ERR 106 (261)
T 1m6j_A 78 SGAYTGEVHVGMLVDC---QVPYVILGHS--ERR 106 (261)
T ss_dssp SBSCTTCCBHHHHHHT---TCCEEEESCH--HHH
T ss_pred CCCccccCCHHHHHHc---CCCEEEECch--hhh
Confidence 4666999997766555 9999999997 553
No 24
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...
Probab=31.54 E-value=25 Score=33.49 Aligned_cols=29 Identities=41% Similarity=0.484 Sum_probs=23.0
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHH
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERP 376 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~ 376 (411)
-|-.|||+|=--..|+ |...+.+||+ ||-
T Consensus 71 ~GA~TGEiS~~mL~d~---G~~~ViiGHS--ERR 99 (250)
T 2j27_A 71 SGAFTGEVSLPILKDF---GVNWIVLGHS--ERR 99 (250)
T ss_dssp CBSCTTCCBHHHHHHT---TCCEEEESCH--HHH
T ss_pred CCCcccccCHHHHHHc---CCCEEEECch--hhh
Confidence 4666999997766555 9999999997 553
No 25
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Probab=31.08 E-value=26 Score=33.36 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=21.7
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChh
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSD 372 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~ 372 (411)
-|-.|||+|=--..|+ |...+.+||++
T Consensus 70 ~GA~TGEiS~~mL~d~---G~~~ViiGHSE 96 (247)
T 1ney_A 70 SGAFTGENSVDQIKDV---GAKYVILGHSE 96 (247)
T ss_dssp SBSCTTCCCHHHHHHT---TCCEEEESCHH
T ss_pred CCCccCccCHHHHHHc---CCCEEEECChh
Confidence 3556999997766555 99999999973
No 26
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=31.05 E-value=46 Score=30.99 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=29.4
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHHHHHHHHHHHHHHhc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLW 390 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~~~~~ 390 (411)
-|-.|||+|=....++ |...+++||++.-..|-+ +.++++..+.
T Consensus 69 ~Ga~TGeis~~~l~~~---Ga~~VllghseRR~~~~e-~~~k~~~A~~ 112 (226)
T 1w0m_A 69 GGAHTAHVSLENIKEA---GGSGVILNHSEAPLKLND-LARLVAKAKS 112 (226)
T ss_dssp CSSCTTCCBHHHHHHH---TCCEEEECCTTSCCBHHH-HHHHHHHHHH
T ss_pred CCCccCCCCHHHHHHc---CCCEEEEeeeeccCCHHH-HHHHHHHHHH
Confidence 3666999998777666 999999999751122222 5565555443
No 27
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}
Probab=30.74 E-value=25 Score=33.44 Aligned_cols=29 Identities=38% Similarity=0.460 Sum_probs=22.7
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHH
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERP 376 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~ 376 (411)
-|-.|||+|=--..|+ |...+.+||+ ||-
T Consensus 70 ~GA~TGEiS~~mL~d~---G~~~ViiGHS--ERR 98 (250)
T 1yya_A 70 EGAYTGEVSARMLSDL---GCRYAIVGHS--ERR 98 (250)
T ss_dssp SBSCTTCCCHHHHHHT---TCSEEEESCH--HHH
T ss_pred CCCccCcCCHHHHHHc---CCCEEEeCch--hhh
Confidence 3556999997766555 9999999997 553
No 28
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=29.28 E-value=43 Score=31.18 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=28.4
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHHHHHHHHHHHHHHhc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLW 390 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~~~~~ 390 (411)
-|-.|||+|=....++ |...+++||++.-..|-+ +.++++..+.
T Consensus 72 ~Ga~TGeis~~~l~~~---Ga~~VllghseRR~~~~e-~~~k~~~A~~ 115 (225)
T 1hg3_A 72 PGSHTGHVLPEAVKEA---GAVGTLLNHSENRMILAD-LEAAIRRAEE 115 (225)
T ss_dssp SBSCTTCCCHHHHHHT---TCCEEEESCGGGCCBHHH-HHHHHHHHHH
T ss_pred CCCccCcccHHHHHHc---CCCEEEECcchhcCCHHH-HHHHHHHHHH
Confidence 3566999997766555 999999999751122222 5555554443
No 29
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A
Probab=28.53 E-value=26 Score=33.49 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=21.3
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChh
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSD 372 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~ 372 (411)
-|-.|||+|---..|+ |...+.+||++
T Consensus 73 ~GA~TGEiS~~mL~d~---G~~~ViiGHSE 99 (255)
T 3qst_A 73 NGAFTGEVTVPMIKSF---GIEWTILGHSE 99 (255)
T ss_dssp SSSCTTCCCHHHHHTT---TCCEEEESCHH
T ss_pred CCCccCccCHHHHHHc---CCCEEEECchh
Confidence 3556999997666555 99999999973
No 30
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1
Probab=28.30 E-value=26 Score=33.54 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=22.5
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHH
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERP 376 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~ 376 (411)
-|-.|||+|=--..|+ |...+.+||+ ||-
T Consensus 72 ~GA~TGEiS~~mL~d~---G~~~ViiGHS--ERR 100 (255)
T 1b9b_A 72 QGAFTGEISPLMLQEI---GVEYVIVGHS--ERR 100 (255)
T ss_dssp SBSCTTCCCHHHHHTT---TCCEEEESCH--HHH
T ss_pred CCCccCcCCHHHHHHc---CCCEEEECch--hhc
Confidence 3556999997666555 9999999997 553
No 31
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1
Probab=27.57 E-value=32 Score=33.31 Aligned_cols=29 Identities=41% Similarity=0.522 Sum_probs=22.5
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHH
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERP 376 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~ 376 (411)
-|-.|||+|=--..|+ |..-+.+||+ ||-
T Consensus 90 ~GAfTGEIS~~mLkd~---G~~~ViiGHS--ERR 118 (275)
T 1mo0_A 90 KGAFTGEISPAMIKDL---GLEWVILGHS--ERR 118 (275)
T ss_dssp SBSCTTCCCHHHHHHT---TCCEEEESCH--HHH
T ss_pred CCCccCcCCHHHHHHc---CCCEEEeCch--hhh
Confidence 3556999997666555 9999999997 553
No 32
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae}
Probab=22.84 E-value=1.2e+02 Score=29.42 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=30.2
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHHHH---HHHHHHHHHHhcc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFL---QTMHTLLQIRLWH 391 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~---~~l~~~L~~~~~~ 391 (411)
-|-.|||+|---..|+ |..-+.+||++.-+.|- +.+..+++..+..
T Consensus 96 ~GAfTGEIS~~mLkd~---G~~~VIiGHSERR~~f~Etde~V~~Kv~~Al~~ 144 (275)
T 3kxq_A 96 YGPYTGDISAFMLKEA---GASHVIIGHSERRTVYQESDAIVRAKVQAAWRA 144 (275)
T ss_dssp SBSCTTCCCHHHHHHH---TCSEEEESCHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred CCCccCcCCHHHHHHc---CCCEEEECchhhccccCCCHHHHHHHHHHHHHC
Confidence 3556999998777776 99999999974322221 2445555555543
No 33
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A
Probab=22.83 E-value=1e+02 Score=29.61 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=28.8
Q ss_pred cCcccccchHHHHHHHHcCCeEEEcCChhchHHHH---HHHHHHHHHHhcc
Q psy18093 344 GFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFL---QTMHTLLQIRLWH 391 (411)
Q Consensus 344 ~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~---~~l~~~L~~~~~~ 391 (411)
|-.|||+|---..|+ |..-+.+||++.-+.|- +.+..+++..+..
T Consensus 77 GAfTGEIS~~mLkd~---G~~~ViiGHSERR~~f~Etde~V~~Kv~~Al~~ 124 (267)
T 3ta6_A 77 GAYTGDVSGAFLAKL---GCSYVVVGHSERRTYHNEDDALVAAKAATALKH 124 (267)
T ss_dssp BSCTTCCCHHHHHHT---TCCEEEESCHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCccCcccHHHHHHc---CCCEEEEcchhhccccCCCHHHHHHHHHHHHHC
Confidence 556999997766555 99999999974322332 2344445544443
No 34
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=21.93 E-value=81 Score=28.50 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=26.8
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHHHHHHHHHHHHH
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQI 387 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~~ 387 (411)
-|..|||++-..+.++ |...+.+||++.-.++- .+.++++.
T Consensus 66 ~ga~tGei~~~~~~~~---Gad~Vll~~ser~l~~~-e~~~~~~~ 106 (219)
T 2h6r_A 66 PGSHTGHILAEAIKDC---GCKGTLINHSEKRMLLA-DIEAVINK 106 (219)
T ss_dssp SBSCTTCCCHHHHHHH---TCCEEEESBTTBCCBHH-HHHHHHHH
T ss_pred cCCccCchHHHHHHHc---CCCEEEECCccccCCHH-HHHHHHHH
Confidence 3555999998777666 99999999974222332 24454443
No 35
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Probab=20.06 E-value=47 Score=31.84 Aligned_cols=46 Identities=26% Similarity=0.303 Sum_probs=29.1
Q ss_pred ccCcccccchHHHHHHHHcCCeEEEcCChhchHHHHH---HHHHHHHHHhcc
Q psy18093 343 LGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQ---TMHTLLQIRLWH 391 (411)
Q Consensus 343 ~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~~---~l~~~L~~~~~~ 391 (411)
-|-.|||+|=--..|+ |...+.+||++.-+.|-+ .+..+++..+..
T Consensus 70 ~GA~TGEiS~~mL~d~---G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~ 118 (259)
T 2i9e_A 70 KGAFTGEISPAMIKDV---GADWVILGHSERRQIFGESDELIAEKVCHALES 118 (259)
T ss_dssp SBSCTTCCCHHHHHHT---TCCEEEESCHHHHHTSCCCHHHHHHHHHHHHHT
T ss_pred CCCccCccCHHHHHHc---CCCEEEECchhhhhhcCCCHHHHHHHHHHHHHC
Confidence 3556999997666555 999999999732222222 355555555543
Done!