RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18093
(411 letters)
>gnl|CDD|216697 pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family
contains several NIF3 (NGG1p interacting factor 3)
protein homologues. NIF3 interacts with the yeast
transcriptional coactivator NGG1p which is part of the
ADA complex, the exact function of this interaction is
unknown.
Length = 237
Score = 92.7 bits (231), Expect = 1e-21
Identities = 54/209 (25%), Positives = 79/209 (37%), Gaps = 66/209 (31%)
Query: 181 AVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLT 240
++YS HT DA GG+NDWLA + + PL PS E L
Sbjct: 90 SLYSAHTNLDAAPGGVNDWLAELLGLESIEPLEPSVSEGEG-----------------LG 132
Query: 241 HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELL 300
I E+ E ++L +K L + + + + I +A+C GSGG L+
Sbjct: 133 RIGEL-------PEPISLEELAKRVKERLGLEGV--RVVGDLDKPIKKVAICGGSGGSLI 183
Query: 301 ---RGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLD 357
+ K ADL I TGE+ HHD LD
Sbjct: 184 EEAKAKGADLLI-------------------------------------TGELKHHDALD 206
Query: 358 ATHRGTTVLLLEHSDSERPFLQTMHTLLQ 386
A +G ++ H +ER L+ + LL+
Sbjct: 207 AKEKGIALIDAGHYATERFGLKALAELLK 235
Score = 62.3 bits (152), Expect = 4e-11
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 85 VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPE 141
+T D K R + + +NI++YS HT DA GG+NDWLA + + PL PS E
Sbjct: 71 ITGDDPKGRRILKLIKNNISLYSAHTNLDAAPGGVNDWLAELLGLESIEPLEPSVSE 127
>gnl|CDD|223404 COG0327, COG0327, Uncharacterized conserved protein [Function
unknown].
Length = 250
Score = 62.7 bits (153), Expect = 3e-11
Identities = 44/222 (19%), Positives = 67/222 (30%), Gaps = 71/222 (31%)
Query: 181 AVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLT 240
+Y+ HT DA G ND LA+ +E P + + + L
Sbjct: 94 NLYAAHTNLDAHPEGGNDALAAALLGAEELPPFGEGL----GRVGELKEPTTLEE---LA 146
Query: 241 HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELL 300
+ G + K+ I +AVC+GSG L
Sbjct: 147 ERIKAKLGRPPL------------------------RVVKDGSEEIKRVAVCSGSGQGFL 182
Query: 301 ---RGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLD 357
+ D YIT G++SHH D
Sbjct: 183 SEAAAEGVDAYIT-------------------------------------GDLSHHTAHD 205
Query: 358 ATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIY 399
A G +V+ H +ERP L+ + LL+ L + + I
Sbjct: 206 ARELGLSVIDAGHYATERPGLKALAELLKELLGVEVTFSDIP 247
Score = 46.5 bits (111), Expect = 9e-06
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 76 LLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLA 124
+ W V + K + + + ++I +Y+ HT DA G ND LA
Sbjct: 68 IFWPVKSLAIDG--PKGKRIKALIQNDINLYAAHTNLDAHPEGGNDALA 114
>gnl|CDD|213534 TIGR00486, YbgI_SA1388, dinuclear metal center protein, YbgI/SA1388
family. The characterization of this family of
uncharacterized proteins as orthologous is tentative.
Members are found in all three domains of life. Several
members (from Bacillus subtilis, Listeria monocytogenes,
and Mycobacterium tuberculosis - all classified as
Firmicutes within the Eubacteria) share a long insert
relative to other members [Unknown function, General].
Length = 249
Score = 57.0 bits (138), Expect = 3e-09
Identities = 40/203 (19%), Positives = 57/203 (28%), Gaps = 73/203 (35%)
Query: 181 AVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLT 240
++YS HT DA GG ND LA + V
Sbjct: 93 SLYSAHTNLDAHDGGNNDALARALGLENPKEFED----------------YGLGRVGEF- 135
Query: 241 HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEI-MINSIAVCAGSGGEL 299
K + EIK L ++ L +N + +AV +GSG
Sbjct: 136 ------------KAPIESLEEVLEIKKVL---NVKPLLVVKNGPEYVKKVAVVSGSGLSF 180
Query: 300 L---RGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVL 356
+ + D YIT G++SHH
Sbjct: 181 IMKALREGVDAYIT-------------------------------------GDLSHHTAH 203
Query: 357 DATHRGTTVLLLEHSDSERPFLQ 379
A G V+ H +ER L+
Sbjct: 204 LARELGLNVIDAGHYATERGGLR 226
Score = 48.2 bits (115), Expect = 2e-06
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 97 TCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPL 135
L ++I++YS HT DA GG ND LA +
Sbjct: 86 ILLQNDISLYSAHTNLDAHDGGNNDALARALGLENPKEF 124
>gnl|CDD|215302 PLN02547, PLN02547, dUTP pyrophosphatase.
Length = 157
Score = 32.5 bits (74), Expect = 0.18
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 309 ITDATHRGTT-VLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRG 362
+ DA +RG V+L HSD + + + +++ VT E+ + LDAT RG
Sbjct: 91 VIDADYRGPVGVILFNHSDVDFEVKVGDRIAQLILEKIVTPEVVEVEDLDATVRG 145
>gnl|CDD|112322 pfam03498, CDtoxinA, Cytolethal distending toxin A/C family.
Length = 149
Score = 31.3 bits (71), Expect = 0.40
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 39 TSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVA------LLWRVNGP 83
T+ V IK G ++ ++S ++T+ KC +A LW + P
Sbjct: 93 TTGAVQIKSLSSGLCITANFNSTTFAFTITLEKCDLATTVNLDQLWMITPP 143
>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 31.0 bits (71), Expect = 1.1
Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 20/112 (17%)
Query: 266 KASLISHDIPGHLSKENEIMINSIAVCAGSGGELLR-----------GKKADLYITDATH 314
KA L+S N I SI+ G G + LR G + L++++ H
Sbjct: 333 KADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLFGKGLGNQEGLFLSNLRH 392
Query: 315 RGT---TVLLLEH--SDSELHIHHVLHVYHILI----LGFVTGEMSHHDVLD 357
LE EL L + + LG +TGE D+LD
Sbjct: 393 IQLLEQAAEHLEDALQQLELGQPLDLLAEDLRLAQEALGEITGEFVSEDLLD 444
>gnl|CDD|233571 TIGR01778, TonB-copper, TonB-dependent copper receptor. This
model represents a family of proteobacterial
TonB-dependent outer membrane receptor/transporters
which bind and translocate copper ions. Two
characterized members of this family exist, outer
membrane protein C (OprC) from Pseudomonas aeruginosa
and NosA from Pseudomonas stutzeri which is responsible
for providing copper for the copper-containing N2O
reducatse [Transport and binding proteins, Cations and
iron carrying compounds, Transport and binding
proteins, Porins].
Length = 636
Score = 29.8 bits (67), Expect = 2.7
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 58 YSSPRKYDSVTVAKCPVALLWRVNGPGVT 86
Y SP YDSVTV K P + + GPG +
Sbjct: 72 YISPESYDSVTVIKGPQTVEY---GPGGS 97
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 29.8 bits (67), Expect = 3.1
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 16/77 (20%)
Query: 295 SGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHD 354
SGGE+ R K A Y A + T+ +L+ + LH H + LI +
Sbjct: 811 SGGEIQRLKLA--YELLAPSKKPTLYVLDEPTTGLHTHDI----KALI----------YV 854
Query: 355 VLDATHRGTTVLLLEHS 371
+ TH+G TV+++EH+
Sbjct: 855 LQSLTHQGHTVVIIEHN 871
>gnl|CDD|238950 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a
subfamily of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases
superfamily includes N type ATP PPases and ATP
sulphurylases. It forms a apha/beta/apha fold which
binds to Adenosine group. This domain has a strongly
conserved motif SGGXD at the N terminus.
Length = 185
Score = 27.9 bits (63), Expect = 8.0
Identities = 21/114 (18%), Positives = 29/114 (25%), Gaps = 33/114 (28%)
Query: 88 DKWKERVVSTCLAHNIAVYSPHTTWDAIQGGIN----------DWLASIYNISEYYPLV- 136
D+ V C I +Y A + G N D+ A I L+
Sbjct: 44 DEEAAFVADLCAKLGIPLYI-LVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLT 102
Query: 137 -----------------PSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNET 173
S M A L+RPL L + + E
Sbjct: 103 AHHADDQAETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPL----LGITRAEI 152
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 28.2 bits (64), Expect = 9.7
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 7/24 (29%)
Query: 295 SGGELLR-------GKKADLYITD 311
SGGEL R + ADLY+ D
Sbjct: 455 SGGELQRVAIAACLSRDADLYLLD 478
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.424
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,839,546
Number of extensions: 1974519
Number of successful extensions: 1462
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1458
Number of HSP's successfully gapped: 23
Length of query: 411
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 312
Effective length of database: 6,546,556
Effective search space: 2042525472
Effective search space used: 2042525472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)