RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18093
(411 letters)
>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus
cereus [TaxId: 1396]}
Length = 370
Score = 93.2 bits (231), Expect = 1e-21
Identities = 65/348 (18%), Positives = 118/348 (33%), Gaps = 74/348 (21%)
Query: 85 VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFN 144
+ DK +++ C+ ++IA+Y+ HT D +GG+ND LA + L P+ E+
Sbjct: 76 IHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEALGLQNTEVLAPTYAEEMK 135
Query: 145 SMIA-ISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASI 203
++ + + + L + N + F S T Q G N ++
Sbjct: 136 KVVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFS-----SEGTGTFVPQEGTNPYIGET 190
Query: 204 YNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTH-IAEVAFGPQQAK--------- 253
+ E I + + H EVA+
Sbjct: 191 GQLERV-------EEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDNKGETLGLG 243
Query: 254 ------ESVTLFNPRYEIKASLISHDIPG-HLSKENEIMINSIAVCAGSGGELL---RGK 303
E +TL +K SL D+ G + + + + +AV G G + + + K
Sbjct: 244 KIGYLQEEMTLGQFAEHVKQSL---DVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFK 300
Query: 304 KADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGT 363
AD+Y+ TG+M +H DA G
Sbjct: 301 GADVYV-------------------------------------TGDMYYHVAHDAMMLGL 323
Query: 364 TVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV 411
++ H+ E+ Q + LQ ++ + I+ S+ DP +V
Sbjct: 324 NIVDPGHN-VEKVMKQGVQKQLQEKVDAKKLNVHIHASQLHTDPFIFV 370
>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 265
Score = 70.5 bits (172), Expect = 2e-14
Identities = 46/234 (19%), Positives = 77/234 (32%), Gaps = 65/234 (27%)
Query: 181 AVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLT 240
AVY HT D ++ G+NDW + I E L + PE+ I ++ Q +
Sbjct: 94 AVYVSHTNIDIVENGLNDWFCQMLGIEETTYLQETGPERGIGRIGNIQPQTFWELAQQVK 153
Query: 241 HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELL 300
+ +++ + + H L K I+ +A+C GSG
Sbjct: 154 QV--------------------FDLDSLRMVHYQEDDLQKP----ISRVAICGGSGQSFY 189
Query: 301 R---GKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLD 357
+ K AD+YI TG++ +H D
Sbjct: 190 KDALAKGADVYI-------------------------------------TGDIYYHTAQD 212
Query: 358 ATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV 411
G L H E F++ + LL + I S+A +P ++
Sbjct: 213 MLSDGLLALDPGHY-IEVIFVEKIAALLSQWKEDKGWSIDILPSQASTNPFHHI 265
Score = 46.2 bits (109), Expect = 2e-06
Identities = 20/87 (22%), Positives = 35/87 (40%)
Query: 83 PGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEK 142
+ + + ++ + H+IAVY HT D ++ G+NDW + I E L + PE+
Sbjct: 73 KDLLASRPQNQIYIDLIKHDIAVYVSHTNIDIVENGLNDWFCQMLGIEETTYLQETGPER 132
Query: 143 FNSMIAISHKIFRLLLRPLFNNNLNLE 169
I L +L+
Sbjct: 133 GIGRIGNIQPQTFWELAQQVKQVFDLD 159
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 52.0 bits (124), Expect = 3e-08
Identities = 33/218 (15%), Positives = 60/218 (27%), Gaps = 71/218 (32%)
Query: 181 AVYSPHTTWDAIQ-GGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHL 239
+Y H DA G N LA++ I+ + P P ++ + ++ +
Sbjct: 92 NLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVP-----WGELTMPVPGLELASWI 146
Query: 240 THIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGEL 299
E G + P ++ +A C G G
Sbjct: 147 ----EARLGRK------------------------PLWCGDTGPEVVQRVAWCTGGGQSF 178
Query: 300 LRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDAT 359
+ A + DA F+TGE+S + A
Sbjct: 179 I--DSAARFGVDA--------------------------------FITGEVSEQTIHSAR 204
Query: 360 HRGTTVLLLEHSDSERPFLQTMHTLLQIRL---WHYLD 394
+G H +ER ++ + L ++D
Sbjct: 205 EQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFID 242
Score = 35.8 bits (82), Expect = 0.006
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 76 LLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQ-GGINDWLASIYNISEYYP 134
W+ P + K + T LA++I +Y H DA G N LA++ I+
Sbjct: 66 YFWKGESPVIRG--MKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGE 123
Query: 135 LVPSKP 140
+ P P
Sbjct: 124 IEPLVP 129
>d1tlya_ f.4.6.1 (A:) Nucleoside-specific channel-forming protein
tsx (NupA) {Escherichia coli [TaxId: 562]}
Length = 267
Score = 26.8 bits (59), Expect = 5.5
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 7/57 (12%)
Query: 159 RPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGG------INDW-LASIYNISE 208
P+F + K + P F P + D + +W A+ Y
Sbjct: 48 APVFFGGNSDAKGIWNHGSPLFMEIEPRFSIDKLTNTDLSFGPFKEWYFANNYIYDM 104
>d2i6ha1 a.118.8.5 (A:1-179) Hypothetical protein Atu0120
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 179
Score = 26.2 bits (57), Expect = 6.0
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 311 DATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHR 361
R L H++ + L ++ H D+++ R
Sbjct: 106 SEDLRVFFYLPFSHAEDIAAQQRACDLNQPLGGLYLHHAEEHRDIVERFGR 156
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1
(Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 343
Score = 26.1 bits (57), Expect = 10.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 368 LEHSDSERPFLQTMHTLLQIR 388
++ S +E FL + LL +R
Sbjct: 260 VKDSKAEPHFLSILQHLLLVR 280
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.424
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,582,309
Number of extensions: 71523
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 16
Length of query: 411
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 324
Effective length of database: 1,213,086
Effective search space: 393039864
Effective search space used: 393039864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)