Query psy18094
Match_columns 260
No_of_seqs 90 out of 92
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 22:25:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mli_A Muconolactone isomerase 55.9 2.8 9.6E-05 32.8 0.4 23 2-24 57-79 (96)
2 1m56_C Cytochrome C oxidase; m 8.8 4.1E+02 0.014 23.3 4.9 79 154-233 117-203 (266)
3 1skh_A Major prion protein 2; 7.9 2.3E+02 0.008 17.6 2.0 19 48-66 3-21 (30)
4 1qle_C Cytochrome C oxidase po 7.3 4.7E+02 0.016 23.0 4.7 79 154-233 124-210 (273)
5 4fak_A Ribosomal RNA large sub 6.9 2.3E+02 0.008 23.4 2.3 25 93-117 133-158 (163)
6 1ns5_A Hypothetical protein YB 6.6 2.2E+02 0.0075 23.3 2.0 25 93-117 124-149 (155)
7 1o6d_A Hypothetical UPF0247 pr 6.4 2.1E+02 0.0073 23.7 1.8 25 93-117 123-148 (163)
8 1to0_A Hypothetical UPF0247 pr 6.4 2.2E+02 0.0074 23.7 1.8 25 93-117 129-154 (167)
9 1bts_A BAND 3 anion transport 5.8 3.8E+02 0.013 15.8 2.2 19 58-76 7-25 (26)
10 3rru_A TOM1L1 protein; structu 5.6 1.9E+02 0.0066 23.4 1.1 16 216-231 8-24 (152)
No 1
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=55.93 E-value=2.8 Score=32.75 Aligned_cols=23 Identities=30% Similarity=0.719 Sum_probs=19.6
Q ss_pred ChhHHHHHHHHhhcccCchhhhh
Q psy18094 2 DPEAFLDLANQVMKLKMYPYFDV 24 (260)
Q Consensus 2 d~~~~~~~a~~~~~l~mfP~Fdi 24 (260)
|.+.-+||-..+++||+|||.+|
T Consensus 57 dv~s~~eLh~iL~~LPLfpym~i 79 (96)
T 1mli_A 57 DVPSVEALHDTLMQLPLFPYMDI 79 (96)
T ss_pred EcCCHHHHHHHHHhCCCCceEEE
Confidence 55667888899999999999876
No 2
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=8.78 E-value=4.1e+02 Score=23.34 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=42.6
Q ss_pred hcCCCCCcccccccC----chhHHHHHHHHHHHHhhcCCccc-c--ccchHHHHHHHHHHHHHHHHHHhc-cCCCchhhh
Q psy18094 154 RGVWTPTAMEFMQPS----FPTKSSIVASIIFVLDKKTDLIS-A--PHALVYFGIVIFFIYFKLSSILLG-IHDPFIPFE 225 (260)
Q Consensus 154 rG~w~p~~~E~LkpS----~~TK~sl~~silftL~~~~~~l~-~--~~~~v~~~~~~f~v~~K~~~~~~~-~~~Pf~p~E 225 (260)
.+.|-|++.+.++|. .+|=+-+.+|+..+.-++ .+.. - ++-...+..|+.+-..=+..-.++ .+.||.|-.
T Consensus 117 g~~Wpp~g~~~~~~~~lpllnT~iLL~Ss~tv~~A~~-a~~~~~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~ 195 (266)
T 1m56_C 117 DGIFPPEGIITFDPWHLPLINTLILLCSGCAATWAHH-ALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHAAFGFAG 195 (266)
T ss_dssp CCCSSCTTCCCCCTTTTHHHHHHHHHHHHHHHHHHHH-HHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSS
T ss_pred CCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence 466989887776654 677444445555555543 1111 1 112223333444333333333333 347899888
Q ss_pred hhhhhhhc
Q psy18094 226 NLGCALFF 233 (260)
Q Consensus 226 n~l~~~~f 233 (260)
|.....||
T Consensus 196 ~~ygS~ff 203 (266)
T 1m56_C 196 NIYGANFF 203 (266)
T ss_dssp SHHHHHHH
T ss_pred CHHHHHHH
Confidence 88888777
No 3
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=7.90 E-value=2.3e+02 Score=17.62 Aligned_cols=19 Identities=16% Similarity=0.494 Sum_probs=14.3
Q ss_pred cCchhHHHHHHHHHHhhHH
Q psy18094 48 KHPLSCWLSTMLVIFAGGM 66 (260)
Q Consensus 48 ~~P~a~WlssmL~cFaG~i 66 (260)
+++++||+-..++.-.++.
T Consensus 3 k~~~~cwilvLfva~wsdv 21 (30)
T 1skh_A 3 KSKIGSWILVLFVAMWSDV 21 (30)
T ss_dssp TTTTTTHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhHH
Confidence 5679999998887665543
No 4
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1
Probab=7.25 E-value=4.7e+02 Score=23.03 Aligned_cols=79 Identities=11% Similarity=0.209 Sum_probs=43.0
Q ss_pred hcCCCCCcccccccC----chhHHHHHHHHHHHHhhcCCc-ccc--ccchHHHHHHHHHHHHHHHHHHhc-cCCCchhhh
Q psy18094 154 RGVWTPTAMEFMQPS----FPTKSSIVASIIFVLDKKTDL-ISA--PHALVYFGIVIFFIYFKLSSILLG-IHDPFIPFE 225 (260)
Q Consensus 154 rG~w~p~~~E~LkpS----~~TK~sl~~silftL~~~~~~-l~~--~~~~v~~~~~~f~v~~K~~~~~~~-~~~Pf~p~E 225 (260)
.+.|-|++.+.++|. .+|=+-+.+|+..++-++ .+ ..- ++-...+..|+.+-..=+..-.++ .+.||.|-.
T Consensus 124 g~~WpP~g~~~~~~~~lpllnT~iLL~Ss~tv~~A~~-a~~~~~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~ 202 (273)
T 1qle_C 124 DGVWPPEGIVTFDPWHLPLINTLILLLSGVAVTWAHH-AFVLEGDRKTTINGLIVAVILGVCFTGLQAYEYSHAAFGLAD 202 (273)
T ss_dssp CCCSSCTTCCCCCTTTHHHHHHHHHHHHHHHHHHHHH-HHHHTCCHHHHHHHTHHHHTHHHHHHHHHHHHGGGCSCCSSS
T ss_pred CCCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence 467999887777654 677444444555555543 22 111 112223333444433333333443 347888888
Q ss_pred hhhhhhhc
Q psy18094 226 NLGCALFF 233 (260)
Q Consensus 226 n~l~~~~f 233 (260)
|.....||
T Consensus 203 ~~ygS~ff 210 (273)
T 1qle_C 203 TVYAGAFY 210 (273)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 88888777
No 5
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=6.90 E-value=2.3e+02 Score=23.45 Aligned_cols=25 Identities=24% Similarity=0.455 Sum_probs=17.4
Q ss_pred hccchhhhHHhhh-hhHHHHHHHHHH
Q psy18094 93 SKFLPVKILFSGM-KEIYRCKKIHDG 117 (260)
Q Consensus 93 ~~~lPvklv~~~m-KEv~R~~KI~~G 117 (260)
.-++|=+++-..+ .-++|+++|..|
T Consensus 133 ~mTfpHqL~RliL~EQlYRA~tIl~g 158 (163)
T 4fak_A 133 KMTFPHQMMRVVLIEQVYRAFKIMRG 158 (163)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 3466766554433 679999999876
No 6
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=6.61 E-value=2.2e+02 Score=23.34 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=17.1
Q ss_pred hccchhhhHHhhh-hhHHHHHHHHHH
Q psy18094 93 SKFLPVKILFSGM-KEIYRCKKIHDG 117 (260)
Q Consensus 93 ~~~lPvklv~~~m-KEv~R~~KI~~G 117 (260)
.-++|=+++-..+ .-++|+++|..|
T Consensus 124 ~mT~pHql~RliL~EQiYRA~~Il~g 149 (155)
T 1ns5_A 124 ALTLPHPLVRVLVAESLYRAWSITTN 149 (155)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHCc
Confidence 3456655553333 669999999876
No 7
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=6.40 E-value=2.1e+02 Score=23.72 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=17.1
Q ss_pred hccchhhhHHhhh-hhHHHHHHHHHH
Q psy18094 93 SKFLPVKILFSGM-KEIYRCKKIHDG 117 (260)
Q Consensus 93 ~~~lPvklv~~~m-KEv~R~~KI~~G 117 (260)
.-++|=+++-..+ .-++|+++|..|
T Consensus 123 ~mTfpHqL~RliL~EQiYRA~tIl~g 148 (163)
T 1o6d_A 123 KMTFTHGMTVLIVLEQIFRAFKIIHG 148 (163)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHCC
Confidence 3456655553333 679999999987
No 8
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=6.37 E-value=2.2e+02 Score=23.71 Aligned_cols=25 Identities=24% Similarity=0.467 Sum_probs=17.4
Q ss_pred hccchhhhHHhhh-hhHHHHHHHHHH
Q psy18094 93 SKFLPVKILFSGM-KEIYRCKKIHDG 117 (260)
Q Consensus 93 ~~~lPvklv~~~m-KEv~R~~KI~~G 117 (260)
.-++|=+++-..+ .-++|+++|..|
T Consensus 129 ~mTfpHqL~RliL~EQiYRA~tIl~g 154 (167)
T 1to0_A 129 KMTFPHQLMRLILVEQIYRAFRINRG 154 (167)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHCC
Confidence 3456655553333 669999999988
No 9
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=5.83 E-value=3.8e+02 Score=15.84 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=10.6
Q ss_pred HHHHHhhHHhHhhhcCCcc
Q psy18094 58 MLVIFAGGMVAGGLLGEPI 76 (260)
Q Consensus 58 mL~cFaG~iLs~~LLGep~ 76 (260)
++-|--+|++-+++-|+|.
T Consensus 7 i~s~ai~Gi~f~lf~gQPL 25 (26)
T 1bts_A 7 LISTAVQGILFALLGAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHhcccC
Confidence 4455566777777778775
No 10
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=5.64 E-value=1.9e+02 Score=23.41 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=9.9
Q ss_pred ccCCCch-hhhhhhhhh
Q psy18094 216 GIHDPFI-PFENLGCAL 231 (260)
Q Consensus 216 ~~~~Pf~-p~En~l~~~ 231 (260)
++||||. |+|..+-+.
T Consensus 8 ~~~~~~~t~~~~~IekA 24 (152)
T 3rru_A 8 HSHDPYATSVGHLIEKA 24 (152)
T ss_dssp ---CGGGSHHHHHHHHH
T ss_pred cCCCCCCChHHHHHHHH
Confidence 4678998 887777554
Done!