Query psy18094
Match_columns 260
No_of_seqs 90 out of 92
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 22:25:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18094.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/18094hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mlia_ d.58.4.1 (A:) Muconala 49.4 2.5 0.00018 31.2 1.0 23 2-24 57-79 (96)
2 d1gvda_ a.4.1.3 (A:) c-Myb, DN 15.2 4.7 0.00034 25.8 -2.7 15 152-166 1-15 (52)
3 d1gx5a_ e.8.1.4 (A:) Viral RNA 11.2 33 0.0024 31.7 0.9 19 42-60 396-414 (530)
4 d1woqa2 c.55.1.10 (A:140-263) 9.3 72 0.0052 22.6 2.1 26 160-185 98-123 (124)
5 d1v54m_ f.23.7.1 (M:) Mitochon 7.4 1.2E+02 0.0087 18.8 2.2 16 55-70 19-37 (43)
6 d1orna_ a.96.1.1 (A:) Endonucl 7.2 1.6E+02 0.012 22.7 3.5 46 188-244 134-181 (214)
7 d2e9xb1 a.278.1.2 (B:62-173) D 5.2 2.4E+02 0.017 19.9 3.2 19 12-30 22-40 (112)
8 d1o6da_ c.116.1.3 (A:) Hypothe 5.0 1.4E+02 0.01 21.8 1.8 24 94-117 122-146 (147)
9 d2gupa2 c.55.1.10 (A:115-289) 4.9 3.5E+02 0.026 18.9 4.1 27 163-189 149-175 (175)
10 d1to0a_ c.116.1.3 (A:) Hypothe 4.7 1.5E+02 0.011 21.7 1.8 24 94-117 130-154 (157)
No 1
>d1mlia_ d.58.4.1 (A:) Muconalactone isomerase, MLI {Pseudomonas putida [TaxId: 303]}
Probab=49.43 E-value=2.5 Score=31.19 Aligned_cols=23 Identities=30% Similarity=0.719 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHhhcccCchhhhh
Q psy18094 2 DPEAFLDLANQVMKLKMYPYFDV 24 (260)
Q Consensus 2 d~~~~~~~a~~~~~l~mfP~Fdi 24 (260)
|.+.-+||-.-++.||+|||.+|
T Consensus 57 dv~s~deLh~iL~~LPL~p~m~i 79 (96)
T d1mlia_ 57 DVPSVEALHDTLMQLPLFPYMDI 79 (96)
T ss_pred EcCCHHHHHHHHHcCCCcccccc
Confidence 45566777778999999999886
No 2
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.24 E-value=4.7 Score=25.78 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=10.2
Q ss_pred HHhcCCCCCcccccc
Q psy18094 152 LIRGVWTPTAMEFMQ 166 (260)
Q Consensus 152 LlrG~w~p~~~E~Lk 166 (260)
|+||.|+|+.++.|+
T Consensus 1 l~rg~WT~eED~~L~ 15 (52)
T d1gvda_ 1 LIKGPWTKEEDQRLI 15 (52)
T ss_dssp CCCCSCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHH
Confidence 467788887776554
No 3
>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus [TaxId: 11103]}
Probab=11.20 E-value=33 Score=31.67 Aligned_cols=19 Identities=26% Similarity=0.700 Sum_probs=15.6
Q ss_pred cchhcccCchhHHHHHHHH
Q psy18094 42 AQTFSRKHPLSCWLSTMLV 60 (260)
Q Consensus 42 a~~~sr~~P~a~WlssmL~ 60 (260)
+-+.+|++|..||+.+++|
T Consensus 396 a~s~~~w~pv~SWlg~Ii~ 414 (530)
T d1gx5a_ 396 AWETARHTPVNSWLGNIIM 414 (530)
T ss_dssp HHHHHSCCSSCHHHHHHHH
T ss_pred hhhhcCCCcHHHHHHHHHH
Confidence 4456678999999999886
No 4
>d1woqa2 c.55.1.10 (A:140-263) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}
Probab=9.27 E-value=72 Score=22.59 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=19.7
Q ss_pred CcccccccCchhHHHHHHHHHHHHhh
Q psy18094 160 TAMEFMQPSFPTKSSIVASIIFVLDK 185 (260)
Q Consensus 160 ~~~E~LkpS~~TK~sl~~silftL~~ 185 (260)
+..++.+-++...+.++||-+..-|+
T Consensus 98 ~~~~i~~a~l~~~AgliGAAl~a~~~ 123 (124)
T d1woqa2 98 LRTPIVPAVLRNEAGIVGAAIEIALQ 123 (124)
T ss_dssp CSSCEEECSCSTTHHHHHHHHHHHHH
T ss_pred ccCeEEecCcCCcHHHHHHHHHHHhc
Confidence 34567777888899999987666655
No 5
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.37 E-value=1.2e+02 Score=18.77 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=10.3
Q ss_pred HHHHHHHH---hhHHhHhh
Q psy18094 55 LSTMLVIF---AGGMVAGG 70 (260)
Q Consensus 55 lssmL~cF---aG~iLs~~ 70 (260)
++.|.+|| +|.|||++
T Consensus 19 Lt~~f~~~L~PaGwVLshL 37 (43)
T d1v54m_ 19 LSVTFLSFLLPAGWVLYHL 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHccHHHHHHHH
Confidence 45555555 67888875
No 6
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=7.21 E-value=1.6e+02 Score=22.71 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=28.3
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHhc--cCCCchhhhhhhhhhhccchhhhhhhhh
Q psy18094 188 DLISAPHALVYFGIVIFFIYFKLSSILLG--IHDPFIPFENLGCALFFGGIWDSLSRMF 244 (260)
Q Consensus 188 ~~l~~~~~~v~~~~~~f~v~~K~~~~~~~--~~~Pf~p~En~l~~~~fG~~~~~~~~~~ 244 (260)
+.++++.|.. +++..+.. ..++....|..+...+--+.|.+++..+
T Consensus 134 ~~~~VDtnv~-----------RV~~Rlg~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~l 181 (214)
T d1orna_ 134 PAIAVDTHVE-----------RVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRM 181 (214)
T ss_dssp CCCCCCHHHH-----------HHHHHHTSSCTTCCHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred CcccccchHH-----------HHHHHHHHhhcccchhhhhhhhhhcCccccHHHHHHHH
Confidence 6667776643 33333332 3366777888888777666677766654
No 7
>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.19 E-value=2.4e+02 Score=19.87 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=14.5
Q ss_pred HhhcccCchhhhhHHHHHH
Q psy18094 12 QVMKLKMYPYFDVAHSVLC 30 (260)
Q Consensus 12 ~~~~l~mfP~FdiaHy~l~ 30 (260)
.|+++|-+=||.+||.++.
T Consensus 22 ~f~~lP~~~~~Eia~~ll~ 40 (112)
T d2e9xb1 22 TFTPMPSPYYMELTKLLLN 40 (112)
T ss_dssp SCCCCSSTTHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHH
Confidence 4777886668888888875
No 8
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=4.98 E-value=1.4e+02 Score=21.80 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=15.9
Q ss_pred ccchhhhHHhh-hhhHHHHHHHHHH
Q psy18094 94 KFLPVKILFSG-MKEIYRCKKIHDG 117 (260)
Q Consensus 94 ~~lPvklv~~~-mKEv~R~~KI~~G 117 (260)
-++|=+++-+. +.-++|++.|..|
T Consensus 122 mT~pH~l~rv~l~EQlYRa~~I~~g 146 (147)
T d1o6da_ 122 MTFTHGMTVLIVLEQIFRAFKIIHG 146 (147)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHcC
Confidence 35565555333 3679999999876
No 9
>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=4.85 E-value=3.5e+02 Score=18.86 Aligned_cols=27 Identities=4% Similarity=0.181 Sum_probs=20.9
Q ss_pred cccccCchhHHHHHHHHHHHHhhcCCc
Q psy18094 163 EFMQPSFPTKSSIVASIIFVLDKKTDL 189 (260)
Q Consensus 163 E~LkpS~~TK~sl~~silftL~~~~~~ 189 (260)
++..-++..-+.++||....||++++|
T Consensus 149 ~i~~s~~~~~a~l~GAa~l~l~~~k~~ 175 (175)
T d2gupa2 149 VIQACTYHADANLYGALVNWLQEEKQW 175 (175)
T ss_dssp CEEECSCSTTHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhccC
Confidence 455666677899999999999887654
No 10
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=4.71 E-value=1.5e+02 Score=21.71 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=15.7
Q ss_pred ccchhhhHHhh-hhhHHHHHHHHHH
Q psy18094 94 KFLPVKILFSG-MKEIYRCKKIHDG 117 (260)
Q Consensus 94 ~~lPvklv~~~-mKEv~R~~KI~~G 117 (260)
-++|=+++-.. +.-++|++.|..|
T Consensus 130 mT~pH~l~r~~l~EQiYRa~tI~~~ 154 (157)
T d1to0a_ 130 MTFPHQLMRLILVEQIYRAFRINRG 154 (157)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHcC
Confidence 44554444332 3779999999876
Done!