RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy18094
         (260 letters)



>gnl|CDD|218492 pfam05197, TRIC, TRIC channel.  TRIC (trimeric intracellular
           cation) channels are differentially expressed in
           intracellular stores in animal cell types. TRIC subtypes
           contain three proposed transmembrane segments, and form
           homo-trimers with a bullet-like structure.
           Electrophysiological measurements with purified TRIC
           preparations identify a monovalent cation-selective
           channel.
          Length = 197

 Score =  241 bits (617), Expect = 6e-81
 Identities = 87/200 (43%), Positives = 125/200 (62%), Gaps = 18/200 (9%)

Query: 34  VREDLGAGAQTFSRKHPLSCWLSTMLVIFAGGMVAGGLLGEPILAPLKNTQQLVIATAA- 92
           +RE    GA  FSRK PL+CWLS ML+ F G +++  LLGEP +APLKNT  +++AT   
Sbjct: 1   LRE--QPGAVAFSRKSPLACWLSAMLMCFGGAILSSFLLGEPPIAPLKNTTNILLATIIW 58

Query: 93  --------------SKFLPVKILFSGMKEIYRCKKIHDGVTHAAKLYPSAYIIMIIIGTL 138
                         + FLPVK++  GMKE+ R  KI  GV+HA  LYP+++++M+++G  
Sbjct: 59  YLVFYCPFDLFYKCASFLPVKLVLVGMKEVTRTWKILGGVSHAHSLYPNSWLVMVLVGWA 118

Query: 139 KGNGAGFIKLLERLIRGVWTPTAMEFMQPSFPTKSSIVASIIFVLDKKTDLISAPHALVY 198
           KG G G +   E+L+RGVW P   EF++ SFPTK+S++ +I+F L     L  + H LV 
Sbjct: 119 KGAGGGLVSNFEQLVRGVWKPETNEFLKMSFPTKASLLGAILFTLQHTHYLPISKHDLV- 177

Query: 199 FGIVIFFIYFKLSSILLGIH 218
           F   +FF+Y K+S +LL  H
Sbjct: 178 FLYTVFFVYIKVSMMLLHSH 197


>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
          Length = 700

 Score = 28.4 bits (64), Expect = 4.5
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 54  WLSTMLVIFAGGMVAGGL---LGEPILA-PLKNTQQLVIATAASKFLPVKILFSGMKEI 108
           WL+++  I++  MVA  +   LGE  LA  L+ T+   I         V  L   MK  
Sbjct: 159 WLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKN---VPNLLRLMKSG 214


>gnl|CDD|220685 pfam10311, Ilm1, Increased loss of mitochondrial DNA protein 1.
           This is a family of proteins of approximately 200
           residues that are conserved in fungi. Ilm1 is part of
           the peroxisome, a complex that is the sole site of
           beta-oxidation in Saccharomyces cerevisiae and known to
           be required for optimal growth in the presence of fatty
           acid. Ilm1 may participate in the control of the C16/C18
           ratio since it interacts strongly with Mga2p, a
           transcription factor that controls expression of Ole1,
           the sole fatty acyl desaturase in S. cerevisiae
           responsible for conversion of the saturated fatty acids
           stearate (C18) and palmitate (C16) to oleate and
           palmitoleate, respectively.
          Length = 143

 Score = 27.6 bits (62), Expect = 4.6
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 14/69 (20%)

Query: 161 AMEFMQPSFPTKSSIVA--SIIFVLDKKTDLIS------------APHALVYFGIVIFFI 206
           AM+         S ++   SI+F L   +DLI              P  L+ F  +  + 
Sbjct: 40  AMQLPALRLSRPSPLLGLLSILFALLALSDLIPLLANNLEYFESIVPLRLILFFALTAYS 99

Query: 207 YFKLSSILL 215
           Y   SS+ L
Sbjct: 100 YLSKSSLYL 108


>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug
           and toxic compound extrusion (MATE) proteins.  The
           integral membrane proteins from the MATE family are
           involved in exporting metabolites across the cell
           membrane and are responsible for multidrug resistance
           (MDR) in many bacteria and animals. A number of family
           members are involved in the synthesis of peptidoglycan
           components in bacteria.
          Length = 444

 Score = 27.5 bits (62), Expect = 7.0
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 176 VASIIFVLDKKTDLISA-----PHALVYF-----GIVIFFIYFKLSSILLGIHDPFIP 223
           V   I        LI A     P AL Y      G+   FI+F  +S+L GI D   P
Sbjct: 106 VLGYILSRPLLLLLIGAPEEVYPLALAYLRIIFLGLPFMFIFFVFNSLLRGIGDTKTP 163


>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase.
            Members of this protein family are putative
           glycosyltransferases, members of pfam00535 (glycosyl
           transferase family 2). Members appear mostly in the
           Actinobacteria, where they appear to be part of a system
           for converting a precursor peptide (TIGR03969) into a
           novel redox carrier designated mycofactocin. A radical
           SAM enzyme, TIGR03962, is a proposed to be a key
           maturase for mycofactocin.
          Length = 467

 Score = 27.8 bits (62), Expect = 7.5
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 32  LHVREDLGAGAQTFSRKHPLSCWLSTMLVIFAGGMVAGGLLG 73
           L  R   G  A   +R+HP S  +  M+V     +   G L 
Sbjct: 290 LARRAFYGTSAAPLARRHPGS--VRPMVVPAWTLLAWLGCLA 329


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.142    0.434 

Gapped
Lambda     K      H
   0.267   0.0771    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,674,052
Number of extensions: 1352959
Number of successful extensions: 1807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1801
Number of HSP's successfully gapped: 47
Length of query: 260
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 165
Effective length of database: 6,723,972
Effective search space: 1109455380
Effective search space used: 1109455380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.0 bits)