RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18094
(260 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.012
Identities = 44/254 (17%), Positives = 70/254 (27%), Gaps = 95/254 (37%)
Query: 4 EAFLDLANQVMKL---------KMYPYFDVAHSVL------------CALHVR----EDL 38
E+F + + + + YP + S+L L + E +
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 39 GAGAQTFSRKHPLSCWLSTMLVIFAGGMVAGG----LLG-----EPILAPLKNTQ----- 84
+ P + LV A +V G L G AP Q
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 85 ---QLVIATAASKFLPVKILFSGMKEIYRCKKIHDGVTHAAKLYPSAYIIMIIIGTLKGN 141
+L + +FLPV F H+ L P++ +I
Sbjct: 410 SERKLKFSN---RFLPVASPF-----------------HSHLLVPASDLI---------- 439
Query: 142 GAGFIKLLERLIRGVWTPTAMEFMQPSFPT---------KSSIVASI---IFVL--D-KK 186
+ L++ + A + P + T SI I I L +
Sbjct: 440 -------NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 187 TDLISAPHALVYFG 200
T A H L FG
Sbjct: 493 TTQFKATHILD-FG 505
Score = 31.6 bits (71), Expect = 0.33
Identities = 27/161 (16%), Positives = 44/161 (27%), Gaps = 58/161 (36%)
Query: 2 DPEAFLDL--------------ANQVMKLK-MYPYFD-VA-HSV-----LCA-------- 31
+ L A + +K K + P A HS+ L +
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780
Query: 32 -----LHVREDLGAGAQTFSRKHPLSCWLSTMLVIFAGGMVAGG------LLGEPILAPL 80
+ R G Q + L M+ I G + A + E +
Sbjct: 1781 SLVEVVFYR---GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 81 K--------NT--QQLVIA--TAASKFLPVKIL-FSGMKEI 108
N QQ V A A + +L F +++I
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRALDTV-TNVLNFIKLQKI 1877
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.019
Identities = 20/152 (13%), Positives = 52/152 (34%), Gaps = 46/152 (30%)
Query: 108 IYRCKKIHDGVTHAAKLYPSAYII---MIIIG--TLKGNGAGFIKLLERLIRGV-W---- 157
+ R + +L P+ ++ ++ G + + K+ ++ + W
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 158 ---TPTA-MEFMQ-------PSFPTKSSIVASIIFVL----DKKTDLISA---PHALVYF 199
+P +E +Q P++ ++S ++I + + L+ + + L+
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-- 248
Query: 200 GIVIFFIYFKLSSILLGIHDPFI--PFENLGC 229
+LL + + F NL C
Sbjct: 249 -------------VLLNVQNAKAWNAF-NLSC 266
Score = 28.7 bits (63), Expect = 2.2
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 29/123 (23%)
Query: 107 EIYRCKKIHDGVTHAAKLYPSAYIIMIIIGTLKGNGAG-----FIKL------LERLIRG 155
+ Y K D Y Y I LK F + LE+ IR
Sbjct: 451 DHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 156 VWTPTAM---------------EFMQPSFPTKSSIVASII-FVLDKKTDLISAPHA-LVY 198
T ++ + P +V +I+ F+ + +LI + + L+
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Query: 199 FGI 201
+
Sbjct: 570 IAL 572
Score = 27.1 bits (59), Expect = 6.8
Identities = 27/182 (14%), Positives = 54/182 (29%), Gaps = 43/182 (23%)
Query: 94 KFLPVKILFSGMKEIYRCKKIHDG---------VTHAAKLYPSAYIIMIIIGTLKGNGAG 144
L V + + CK + D + H + + + TL
Sbjct: 20 DILSV--FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 145 FIK-LLERLIRG----VWTPTAMEFMQPSFPTKSSIVASIIFVLDKKTDLISAPHALVYF 199
++ +E ++R + +P E QPS T+ I +++ L + +
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI--------EQRDRLYNDNQVFAKY 129
Query: 200 GIVIFFIYFKLSSILLGI-HDPFIPFENLG------------------CALFFGGIWDSL 240
+ Y KL LL + + + + C + F W +L
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 241 SR 242
Sbjct: 190 KN 191
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine
biosynthesis, fumarate reductase, energy metabolism,
redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A
{Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A*
2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Length = 314
Score = 29.1 bits (66), Expect = 1.5
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 13/87 (14%)
Query: 1 MDPEAFLDLANQVMK-------LKMYPYFDVAHSVLCALHVREDLGAGA----QTFSRKH 49
D EA QV +KM PYFD+AH A + E +
Sbjct: 143 YDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGN-- 200
Query: 50 PLSCWLSTMLVIFAGGMVAGGLLGEPI 76
L + V+ GGL G+ I
Sbjct: 201 GLVIDAESESVVIKPKQGFGGLGGKYI 227
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 28.7 bits (63), Expect = 2.0
Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 3/94 (3%)
Query: 63 AGGMVAGGLLGEPILAPLKNTQQ--LVIATAASKFLPVKILF-SGMKEIYRCKKIHDGVT 119
G VA L+ +T +V + K +G + +
Sbjct: 13 TGMNVATKLVDLGEAVHCFDTCDKNVVDVHRSVNVTLTKGTRGAGGNRKVILPLVRPQIP 72
Query: 120 HAAKLYPSAYIIMIIIGTLKGNGAGFIKLLERLI 153
P A ++ G+G+ L+ +
Sbjct: 73 ALMDTIPEADFYIVCYSLGGGSGSVLGPLITGQL 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.434
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,035,953
Number of extensions: 241508
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 17
Length of query: 260
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 168
Effective length of database: 4,133,061
Effective search space: 694354248
Effective search space used: 694354248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.4 bits)