BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18096
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
+D L M+ E+C + + R+G+G+ G+P I P A+L Y +TL S + E+
Sbjct: 202 IDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261
Query: 61 EKRLD------------------------FGGILASQELLDSLIKER--------INCYN 88
+++L+ +G I++ E+ L ++ + +
Sbjct: 262 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321
Query: 89 NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
NLA +KL A+ + L LD N K L R+ + +L
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 32/162 (19%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
+D L M+ E+C + + R+G+G+ G+P I P A+L Y +TL S + E+
Sbjct: 202 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261
Query: 61 EKRLD------------------------FGGILASQELLDSLIKER--------INCYN 88
+++L+ +G I++ E+ L ++ + +
Sbjct: 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321
Query: 89 NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
NLA +KL A+ + L LD N K L R+ + +L
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 2 DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
D + M+ GE C + + YG G K IP A L++ + L
Sbjct: 91 DIGVATMKRGEICHLLCKPEYAYGSAGSLPK-IPSNATLFFEIEL 134
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 32/159 (20%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
++ + ME GE + + + +G G+ IPP A+L Y L L S + E+
Sbjct: 81 LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNS 140
Query: 61 EKRLD------------------------FGGILASQELLDSLIKE--------RINCYN 88
E++L+ + I++ E S E R+ +
Sbjct: 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200
Query: 89 NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
NLA +KL + A+ S L LD NN K L R+ +
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEA 239
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
D L M GE+ ++EI + YG KG+P IPP AKL + + L
Sbjct: 67 WDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVEL 112
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 32/161 (19%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
++ + E GE + + + +G G+ IPP A+L Y L L S + E
Sbjct: 81 LERAIQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEXNS 140
Query: 61 EKRLD------------------------FGGILASQELLDSLIKE--------RINCYN 88
E++L+ + I++ E S E R+ +
Sbjct: 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200
Query: 89 NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
NLA +KL + A+ S L LD NN K L R+ + +
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL 241
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
D L M GE+ ++EI + YG KG+P IPP KL + + L
Sbjct: 70 WDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVEL 115
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHS 48
+D L M+ E+C + + R+G+G+ G+P I P A+L Y +TL S
Sbjct: 206 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKS 253
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL--PDFDLA 56
+D +PLM+ GE + +++ YG +G S IPP A L +TL + + PD +++
Sbjct: 73 LDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEMS 130
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL 50
+D +PLM+ GE + +++ YG +G S IPP A L +TL + +
Sbjct: 99 LDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAV 148
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDL 55
+D +PLM+ GE + +++ YG +G S IPP A L +TL + + DL
Sbjct: 67 LDLSVPLMDVGETAMVTADSKYCYGPQGR-SPYIPPHAALCLEVTLKTAVDGPDL 120
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL-----HSVLPDFD 54
D + M GE + I + +GYGD G P K IP GA L + + L + PD D
Sbjct: 73 WDLGVATMTKGEVAEFTIRSDYGYGDAGSPPK-IPGGATLIFEVELFEWSAEDISPDRD 130
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
D + M+ GE C I + YG G P K IPP A L + + L
Sbjct: 90 WDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATLVFEVEL 134
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
D + M+ GE C I + YG G P K IPP A L + + L
Sbjct: 94 WDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATLVFEVEL 138
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVL 50
+D +PLM+ GE + +++ YG +G S IPP A L +TL + +
Sbjct: 69 LDLSVPLMDVGETAMVTADSKYCYGPQGR-SPYIPPHAALCLEVTLKTAV 117
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
D + M+ GE C+I + YG G P K IPP A L + + L
Sbjct: 89 WDIAVATMKVGELCRITCKPEYAYGSAGSPPK-IPPNATLVFEVEL 133
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
D + M+ GE C I + YG G P K IPP A L + + L
Sbjct: 110 WDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATLVFEVEL 154
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHS 48
++ + ME GE + + + +G G+ IPP A+L Y L L S
Sbjct: 224 LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKS 271
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
+ NL A K G + A+ + L LDPNN KA R+
Sbjct: 45 AWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYY 88
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ NL A K G + A+ + L LDPNN A
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAW 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 93 AQIKLGSLEPALMSLENVLNLDPNNIKALQ 122
A K G + A+ + L LDPNN KA Q
Sbjct: 86 AYYKQGDYQKAIEDYQKALELDPNNAKAKQ 115
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAK 126
++C N+ ++K+ + A+ S L +DP+N KAL R+A+
Sbjct: 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQ 315
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 65 DFGGILA--SQEL-LDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
D+GG LA +Q L LD+ +++ + N A +KL + A + D ++KAL
Sbjct: 43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102
Query: 122 QRKAKCL 128
R+++ L
Sbjct: 103 YRRSQAL 109
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 47 HSVLPDFDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMS 106
H L D+D AE K ++ G + +QA KLG L+ A++
Sbjct: 75 HLKLEDYDKAETEASKAIEKDG-------------GDVKALYRRSQALEKLGRLDQAVLD 121
Query: 107 LENVLNLDPNN 117
L+ ++L+P N
Sbjct: 122 LQRCVSLEPKN 132
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHS 48
D + M E+C + I + +GYGD+G +SIP + L + + L S
Sbjct: 78 WDICVSSMRKNEKCLVRIESMYGYGDEG-CGESIPGNSVLLFEIELLS 124
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHS 48
D + M E+C + I + +GYGD+G +SIP + L + + L S
Sbjct: 78 WDICVSSMRKNEKCLVRIESMYGYGDEG-CGESIPGNSVLLFEIELLS 124
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 79 LIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
L ++ I Y N++Q + +G L A + VL + N KAL R+AK I
Sbjct: 58 LDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARI 108
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR 123
+ NL A K G + A+ + L LDPNN +A Q
Sbjct: 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ NL A K G + A+ + L LDPNN +A
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 46
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ NL A K G + A+ + L LDPNN +A
Sbjct: 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 11 GEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
GE+ ++ I + GYG++G P K IP GA L + + L
Sbjct: 59 GEKRKLVIPSELGYGERGAPPK-IPGGATLVFEVEL 93
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR 123
+ NL A K G + A+ + L LDPNN +A Q
Sbjct: 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ NL A K G + A+ + L LDPNN +A
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 46
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
D + M E+C + + +++GYG++G +SIP + L + + L
Sbjct: 77 WDICVASMTKNEKCSVRLDSKYGYGEEG-CGESIPGNSVLIFEIEL 121
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
D +P + GE+ ++ I + YG +G P IPP + L + + L V
Sbjct: 65 WDVGIPKLSVGEKARLTIPGPYAYGPRGFPGL-IPPNSTLVFDVELLKV 112
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
Y+N A KL + AL + + LD IK RKA CL+
Sbjct: 50 YSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 28.9 bits (63), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
Y+N A A KL S A+ + DPN ++A RKA I
Sbjct: 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
E Y ++ + G + A+ + + VL DPNN++ L + K +
Sbjct: 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM 50
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
Y+N A A KL S A+ + DPN ++A RKA I
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 8 METGEECQIEITARFGYGDKGEPSK----SIPPGAKLYYSLTLHS 48
M+ GE+ + + ++G+G+ G P+ ++PP A L L L S
Sbjct: 189 MKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVS 233
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAE 57
D + M+ GE I YG+ G P +IP A L + + L S D+A+
Sbjct: 70 WDQGIKTMKKGENALFTIPPELAYGESGSPP-TIPANATLQFDVELLSWTSVRDIAK 125
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 8 METGEECQIEITARFGYGDKGEPSK----SIPPGAKLYYSLTLHS 48
M+ GE+ + + ++G+G+ G P+ ++PP A L L L S
Sbjct: 205 MKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVS 249
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAE 57
D + M+ GE I YG+ G P +IP A L + + L S D+A+
Sbjct: 86 WDQGIKTMKKGENALFTIPPELAYGESGSPP-TIPANATLQFDVELLSWTSVRDIAK 141
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y+N A KL + AL E + L+P IK RKA L
Sbjct: 53 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94
>pdb|2PK9|B Chain B, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|D Chain D, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|B Chain B, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|D Chain D, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 293
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 40 LYYSLTLHSVLPDFDLAELPVEKRLDFGGILASQELLDSL 79
LYY L +V PDF L L + L +A++ L DS
Sbjct: 99 LYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSF 138
>pdb|1HZ4|A Chain A, Crystal Structure Of Transcription Factor Malt Domain Iii
Length = 373
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENV 110
+ N+A+AQI LG EPA + LE +
Sbjct: 256 WRNIARAQILLGEFEPAEIVLEEL 279
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 66 MSVGQRAKLTISPDYAYGATGHPG-IIPPNATLIFDVEL 103
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 66 MSVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 66 MSVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 66 MSVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 66 MSVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 68 MSVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 105
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 66 MSVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 66 MSVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 66 MSVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 66 MSVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 66 MSVGQRAKLTISPDYAYGATGHPG-IIPPHATLVFDVEL 103
>pdb|2A2F|X Chain X, Crystal Structure Of Sec15 C-Terminal Domain
Length = 325
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 103 ALMSLENVLNLDPNNIKALQRKAKCLILT 131
A M L L PN + A+ RKA L+LT
Sbjct: 90 ACMKFAEELTLSPNEVAAMVRKAANLLLT 118
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
Y+N++ I G LE + L + P++ KAL R+A
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 73 QELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR 123
Q LLD I+C NLA K A+ VL +D NN+KAL +
Sbjct: 77 QILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYK 127
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
Y+N++ I G LE + L + P++ KAL R+A
Sbjct: 58 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 98
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ + + YG +G P IPP A L + + L
Sbjct: 67 MSVGQRAKLVCSPDYAYGSRGHPG-VIPPNATLTFDVEL 104
>pdb|1JEQ|B Chain B, Crystal Structure Of The Ku Heterodimer
pdb|1JEY|B Chain B, Crystal Structure Of The Ku Heterodimer Bound To Dna
Length = 565
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 37 GAKLYYSLTLHS--VLPDFDLAELPVEKRLDFGGILASQELLDSLI 80
G Y ++T+H +LPDFDL E +E ++ G A + LD+LI
Sbjct: 70 GGDQYQNITVHRHLMLPDFDLLE-DIESKIQPGSQQA--DFLDALI 112
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
D + M GE+ I + YG++G P IPP A L + + L +V
Sbjct: 83 WDQGVATMTLGEKALFTIPYQLAYGERGYPP-VIPPKATLVFEVELLAV 130
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 METGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTL 46
M G+ ++ I+ + YG G P IPP A L + + L
Sbjct: 66 MSVGQRAKLTISPDYAYGATGVPG-IIPPHATLVFDVEL 103
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 51 PDFDLAELPVEKRLDFGGILASQELLDSLIKER-INCYNNLAQ 92
P +D +LP EKR + GG+LA +++L+ R I Y +L
Sbjct: 87 PKWD--DLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVH 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,824,355
Number of Sequences: 62578
Number of extensions: 145083
Number of successful extensions: 458
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 89
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)