RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18096
(131 letters)
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 92.8 bits (230), Expect = 2e-23
Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 32/161 (19%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
+D L M+ E+C + + R+G+G+ G+P I P A+L Y +TL S + E+
Sbjct: 202 IDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDT 261
Query: 61 E-----------------KRLDFGG---------------ILASQELLDSLIKERINCYN 88
+ K + S++ + + +
Sbjct: 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321
Query: 89 NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
NLA +KL A+ + L LD N K L R+ + +
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL 362
Score = 46.6 bits (110), Expect = 4e-07
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
D + M+ GE C + + YG G K IP A L++ + L + + +
Sbjct: 90 WDIGVATMKRGEICHLLCKPEYAYGSAGSLPK-IPSNATLFFEIELLDFKGEDLFEDGGI 148
Query: 61 EKR 63
+R
Sbjct: 149 IRR 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 90.3 bits (224), Expect = 7e-23
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 32/161 (19%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPV 60
++ + ME GE + + + +G G+ IPP A+L Y L L S + E+
Sbjct: 81 LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNS 140
Query: 61 EKRLDFGGIL--------------------------------ASQELLDSLIKERINCYN 88
E++L+ I+ S E R+ +
Sbjct: 141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200
Query: 89 NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
NLA +KL + A+ S L LD NN K L R+ + +
Sbjct: 201 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL 241
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 77.4 bits (190), Expect = 4e-18
Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 38/167 (22%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSK-SIPPGAKLYYSLTLHSVLPDF---DLA 56
+ + M++GE + + YG +G S ++PP A L Y + + +
Sbjct: 109 LAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARS 168
Query: 57 ELPVEKRLDFGGIL----------------------------------ASQELLDSLIKE 82
++ VE+R+ + D +
Sbjct: 169 DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV 228
Query: 83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
+ C+ N+A IKL + A+ VL + N KAL R+ K
Sbjct: 229 KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA 275
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 135
Score = 57.7 bits (140), Expect = 7e-12
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 2 DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVE 61
D +PLM+ GE + +++ YG +G S IPP A L +TL + + DL
Sbjct: 74 DLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPDLEMSGPS 133
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 55.5 bits (134), Expect = 7e-11
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 72 SQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
+ L ++ I Y N++Q + +G L A + VL + N KAL R+AK I
Sbjct: 51 GEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARI 108
Score = 34.7 bits (80), Expect = 0.003
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 91 AQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
A+A+I L+ A L+ +L P + R+ K +
Sbjct: 104 AKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 55.6 bits (134), Expect = 1e-10
Identities = 19/66 (28%), Positives = 25/66 (37%)
Query: 64 LDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR 123
Q LLD I+C NLA K A+ VL +D NN+KAL +
Sbjct: 68 FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYK 127
Query: 124 KAKCLI 129
+
Sbjct: 128 LGVANM 133
Score = 34.0 bits (78), Expect = 0.006
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 91 AQAQIKLGSLEPALMSLENVLNLDPNN--IKALQRKAKCLI 129
A + G LE A +L +L+PNN I+ +
Sbjct: 129 GVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel,
central helix, with flexible N-terminal extension,
isomerase; NMR {Homo sapiens}
Length = 157
Score = 52.9 bits (127), Expect = 7e-10
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 2 DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
D +PLM+ GE + +++ YG +G S IPP A L +TL +
Sbjct: 100 DLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 50.0 bits (120), Expect = 6e-09
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 76 LDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
LD+ +++ + N A +KL + A + D ++KAL R+++ L
Sbjct: 57 LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQAL 109
Score = 35.0 bits (81), Expect = 0.002
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
+QA KLG L+ A++ L+ ++L+P N +
Sbjct: 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor,
SHH signalling antagonist, structural genomics
consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Length = 118
Score = 49.2 bits (118), Expect = 7e-09
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 2 DYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
D +PLM+ GE + +++ YG +G IPP A L +TL +
Sbjct: 70 DLSVPLMDVGETAMVTADSKYCYGPQGRS-PYIPPHAALCLEVTLKTA 116
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 51.3 bits (123), Expect = 8e-09
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 64 LDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQR 123
++ A L ++C N+ ++K+ + A+ S L +DP+N KAL R
Sbjct: 253 VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYR 312
Query: 124 KAKCLI 129
+A+
Sbjct: 313 RAQGWQ 318
Score = 28.9 bits (65), Expect = 0.39
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 91 AQAQIKLGSLEPALMSLENVLNLDPNN--IKALQRKAKCLI 129
AQ L + AL L+ + P + I+A K K I
Sbjct: 314 AQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein,
phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP:
d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Length = 280
Score = 51.0 bits (122), Expect = 1e-08
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
++ + ME GE + + + +G G+ IPP A+L Y L L S
Sbjct: 224 LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSF 272
Score = 42.5 bits (100), Expect = 8e-06
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
D + M+ GE C I + YG G P K IPP A L
Sbjct: 110 WDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATL 148
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 45.7 bits (109), Expect = 2e-07
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y+N A KL + AL + + LD IK RKA CL
Sbjct: 50 YSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91
Score = 35.7 bits (83), Expect = 0.001
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
Y A + + A + E+ L +DP+N +A + C
Sbjct: 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 45.0 bits (107), Expect = 3e-07
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y+N A A KL S A+ + DPN ++A RKA
Sbjct: 40 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82
Score = 32.2 bits (74), Expect = 0.015
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDP--NNIKALQRKAKCL 128
Y A AQI + AL +L+ D NN + + +
Sbjct: 75 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus,
phosphoprotein, R isomerase-inhibitor complex; HET: RAP;
1.95A {Mus musculus} PDB: 1pbk_A*
Length = 119
Score = 44.6 bits (106), Expect = 5e-07
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
L M GE+ ++EI + YG KG+P IPP KL
Sbjct: 74 LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKL 109
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 46.2 bits (110), Expect = 5e-07
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
Y A + +G + AL L V+ L + A ++ L+
Sbjct: 62 AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105
Score = 45.1 bits (107), Expect = 1e-06
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
+ + K A+ VL ++P+N+ AL+ +A+ +
Sbjct: 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340
Score = 38.5 bits (90), Expect = 2e-04
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
A+ IK G A+ L+ L +N +A + +
Sbjct: 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221
Score = 35.4 bits (82), Expect = 0.003
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAK 126
+K G L+ A + VL +P+ + + +++
Sbjct: 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136
Score = 35.0 bits (81), Expect = 0.004
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Query: 38 AKLYYSL-TLHSVLPDFDLAELPVEK--RLDFGGILASQELLDSLIKERINCYNNLAQAQ 94
L D AE +K + + + + + + + A
Sbjct: 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153
Query: 95 IKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
G A+ L+ +L + + + + +A+C I
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI 188
Score = 34.7 bits (80), Expect = 0.005
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
+ A+A + + A+ E + N+ + + K L
Sbjct: 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375
Score = 33.1 bits (76), Expect = 0.019
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 67 GGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAK 126
G L ++ L + + + + L + + G L AL ++ DP+N A R+A
Sbjct: 10 GVDLGTENLYFQSMAD-VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRAT 68
Query: 127 CLI 129
+
Sbjct: 69 VFL 71
Score = 32.3 bits (74), Expect = 0.028
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ ++ +LG E +L + L LD ++ +
Sbjct: 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 247
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain
five-stranded anti-parallel beta-sheet alpha-helix
crossing THis sheet; 2.08A {Triticum aestivum} PDB:
3jym_A
Length = 356
Score = 46.0 bits (109), Expect = 6e-07
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSK-SIPPGAKLYYSLTLHSV 49
+D + M+ GE + I + YG +PP + + Y + L S
Sbjct: 304 LDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSF 353
Score = 43.7 bits (103), Expect = 4e-06
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSK----SIPPGAKLYYSLTL 46
+ + M+ GE+ + + ++G+G+ G P+ ++PP A L L L
Sbjct: 182 LAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLEL 231
Score = 40.6 bits (95), Expect = 5e-05
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYY 42
D + M+ GE I YG+ G P IP A L +
Sbjct: 70 WDQGIKTMKKGENALFTIPPELAYGESGSPPT-IPANATLQF 110
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 44.6 bits (106), Expect = 6e-07
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
Y N A +K+ E AL L LD ++KA +C +
Sbjct: 45 YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88
Score = 36.9 bits (86), Expect = 4e-04
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
+ L Q Q+++ S + A+ +L+ +L +
Sbjct: 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 43.4 bits (103), Expect = 1e-06
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y+N A KL + AL E + L+P IK RKA L
Sbjct: 53 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94
Score = 37.6 bits (88), Expect = 2e-04
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y A A + A+ + L+LD + +A +C+
Sbjct: 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 43.9 bits (104), Expect = 2e-06
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y N + A ++ AL + LD IK R+A
Sbjct: 50 YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91
Score = 35.0 bits (81), Expect = 0.002
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
Y A + + LG AL E V+ + P++ A + +C
Sbjct: 84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 44.6 bits (106), Expect = 2e-06
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
Y A + +G + AL L V+ L + A ++ L+
Sbjct: 39 AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82
Score = 43.8 bits (104), Expect = 3e-06
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
+ + K A+ VL ++P+N+ AL+ +A+ +
Sbjct: 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317
Score = 38.4 bits (90), Expect = 2e-04
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
A+ IK G A+ L+ L +N +A + +
Sbjct: 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198
Score = 37.3 bits (87), Expect = 5e-04
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+K G L+ A + VL +P+ + + +++ +
Sbjct: 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115
Score = 34.6 bits (80), Expect = 0.005
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
+ A+A + + A+ E + N+ + + K L
Sbjct: 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352
Score = 33.0 bits (76), Expect = 0.015
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ ++ +LG E +L + L LD ++ +
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 225
Score = 32.6 bits (75), Expect = 0.020
Identities = 7/59 (11%), Positives = 21/59 (35%)
Query: 71 ASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
+ + + + + A A+ L+ +L + + + + +A+C I
Sbjct: 107 EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165
Score = 32.6 bits (75), Expect = 0.021
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
+ + L + + G L AL ++ DP+N A R+A +
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL 48
Score = 28.4 bits (64), Expect = 0.60
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN----IKALQRKAKCL 128
++N A+ I+ G A E+V+ +P+ +++ +R C
Sbjct: 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 42.7 bits (101), Expect = 2e-06
Identities = 12/44 (27%), Positives = 15/44 (34%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
Y+N A A IKLG A+ + L R L
Sbjct: 41 YSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 42.6 bits (101), Expect = 2e-06
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y+N + A K G + A ++L P+ K RKA L
Sbjct: 40 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82
Score = 35.6 bits (83), Expect = 8e-04
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
Y+ A A L E A + E L + NN + +
Sbjct: 75 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 42.9 bits (101), Expect = 4e-06
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPS-KSIPPGAKLYYSLTLHSVLPDFDLA--- 56
+ + M++GE + + YG +G S ++PP A L Y + + +
Sbjct: 109 LAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARS 168
Query: 57 ELPVEKRLD 65
++ VE+R+
Sbjct: 169 DMTVEERIG 177
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 42.2 bits (100), Expect = 4e-06
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ N A A KLG+ A+ E + +DP KA R L
Sbjct: 49 FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90
Score = 37.2 bits (87), Expect = 3e-04
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
Y + A L A+ + L LDP+N
Sbjct: 83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens}
Length = 102
Score = 41.4 bits (98), Expect = 5e-06
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDL 55
L M GE+ ++ I + GYG++G P K IP GA L + + L + +L
Sbjct: 53 LLGMCEGEKRKLVIPSELGYGERGAPPK-IPGGATLVFEVELLKIERRTEL 102
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 43.0 bits (101), Expect = 7e-06
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
Y N A +K+ E AL L LD ++KA +C +
Sbjct: 41 YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83
Score = 32.6 bits (74), Expect = 0.027
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
+ L Q Q+++ S + A+ +L+ +L +
Sbjct: 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5;
2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A*
3ni6_A 3pa7_A
Length = 129
Score = 40.7 bits (96), Expect = 2e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
+ M E+C + I + +GYGD+G IP + L
Sbjct: 82 VSSMRKNEKCLVRIESMYGYGDEGCGES-IPGNSVL 116
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 41.3 bits (97), Expect = 2e-05
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+N A A G E A E +DP KA R
Sbjct: 48 LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89
Score = 35.1 bits (81), Expect = 0.002
Identities = 5/39 (12%), Positives = 15/39 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKA 125
++ L A+ + + A + E + + N ++
Sbjct: 82 WSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A
3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Length = 128
Score = 39.9 bits (94), Expect = 3e-05
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
+ M+ GE C + + YG G K IP A L
Sbjct: 82 VATMKKGEICHLLCKPEYAYGSAGSLPK-IPSNATL 116
>1r9h_A FKB-6, FK506 binding protein family; structural genomics,
peptidylprolyl isomerase, PSI, protein structure
initiative; 1.80A {Caenorhabditis elegans} SCOP:
d.26.1.1
Length = 135
Score = 40.0 bits (94), Expect = 3e-05
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
+ M GE + I + +GYGD G P K IP GA L
Sbjct: 77 VATMTKGEVAEFTIRSDYGYGDAGSPPK-IPGGATL 111
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 40.6 bits (96), Expect = 3e-05
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y+N A A KL S A+ + DPN ++A RKA
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKA 125
Y A AQI + AL +L+ D +
Sbjct: 210 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248
Score = 33.7 bits (78), Expect = 0.010
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + I NN A A+ + G E A+ +L + + + +K
Sbjct: 34 LHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82
Score = 30.6 bits (70), Expect = 0.094
Identities = 8/72 (11%), Positives = 20/72 (27%), Gaps = 10/72 (13%)
Query: 67 GGILASQELLDSLIKE-----RIN-----CYNNLAQAQIKLGSLEPALMSLENVLNLDPN 116
IL + +K+ +N + A+ + ++ P
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171
Query: 117 NIKALQRKAKCL 128
+ + +A L
Sbjct: 172 DARGYSNRAAAL 183
Score = 30.6 bits (70), Expect = 0.099
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
++ + A KL + E L E ++P + + + K
Sbjct: 101 YYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEY 149
Score = 28.7 bits (65), Expect = 0.55
Identities = 4/34 (11%), Positives = 15/34 (44%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
Y ++++ ++G+ L L+ + ++
Sbjct: 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108
Score = 26.7 bits (60), Expect = 2.3
Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ K + A+ L +I L +A
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAE 48
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain,
HSP90 cochaperone, immunophiline, PEP prolyl isomerase;
1.60A {Homo sapiens} PDB: 3o5f_A
Length = 144
Score = 40.0 bits (94), Expect = 3e-05
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
+ M+ GE C + + YG G K IP A L
Sbjct: 98 VATMKKGEICHLLCKPEYAYGSAGSLPK-IPSNATL 132
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB:
1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A*
1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A*
1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Length = 107
Score = 39.1 bits (92), Expect = 3e-05
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
+ M G+ ++ I+ + YG G P IPP A L
Sbjct: 63 VAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATL 97
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae}
SCOP: d.26.1.1
Length = 113
Score = 39.1 bits (92), Expect = 4e-05
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
+P + GE+ ++ I + YG +G P IPP + L + + L V
Sbjct: 69 IPKLSVGEKARLTIPGPYAYGPRGFPGL-IPPNSTLVFDVELLKV 112
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura
genomics, seattle structural genomics center for
infectious; NMR {Giardia lamblia}
Length = 130
Score = 38.4 bits (90), Expect = 9e-05
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
+ M GE+ I + YG++G P IPP A L + + L +V
Sbjct: 87 VATMTLGEKALFTIPYQLAYGERGYPPV-IPPKATLVFEVELLAV 130
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 39.7 bits (93), Expect = 1e-04
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y+NL+ + +G L+ + L L P+ K L R+A
Sbjct: 42 YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83
Score = 37.4 bits (87), Expect = 6e-04
Identities = 9/49 (18%), Positives = 15/49 (30%)
Query: 80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ R+N Y +A + L LD NN + +
Sbjct: 266 LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314
Score = 36.6 bits (85), Expect = 0.001
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y + Q L + + A + LDP NI + A
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348
Score = 35.9 bits (83), Expect = 0.002
Identities = 6/42 (14%), Positives = 10/42 (23%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y LA + + P + A+ L
Sbjct: 341 YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEIL 382
Score = 34.3 bits (79), Expect = 0.007
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
LAQ +++ ++ A+ E +L + LQ
Sbjct: 451 AKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492
Score = 34.3 bits (79), Expect = 0.007
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
N A+ + AL + + L+ A +
Sbjct: 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416
Score = 28.6 bits (64), Expect = 0.55
Identities = 4/42 (9%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + A ++ + L P + + A +
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIM 280
Score = 28.2 bits (63), Expect = 0.73
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 84 INCYNNLAQAQIKLGSLEPALMSLENV-LNLDPNNIKALQRKAKCLIL 130
A A LG A+ L + LN D N+ + L
Sbjct: 73 SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNK 120
Score = 25.1 bits (55), Expect = 9.7
Identities = 4/48 (8%), Positives = 12/48 (25%), Gaps = 1/48 (2%)
Query: 81 KERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + + + A+ L L + + + C
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACY 49
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 1e-04
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 25/121 (20%)
Query: 14 CQIEITARF--------GYGDKGEPSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLD 65
C+I +T RF +L D +LP E
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---- 321
Query: 66 FGGILASQELLDSLI----KERINCYNNLAQAQIKLGSLEPAL-MSLENVLNLDPNNIKA 120
+L + S+I ++ + ++N L + SL L+P +
Sbjct: 322 ---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCD--KLTTIIESSLN---VLEPAEYRK 373
Query: 121 L 121
+
Sbjct: 374 M 374
Score = 35.2 bits (80), Expect = 0.004
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 38/137 (27%)
Query: 4 VLPLMETGEECQ-IEITARFGY-------GDKGEPSKSIPPGAKLYYSLTLHSVLPDF-D 54
+ + C ++ + + + P + KL Y + P++
Sbjct: 165 WV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-----PNWTS 215
Query: 55 LAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLD 114
++ +L I Q L L+K + Y N L+ L NV +
Sbjct: 216 RSDHSSNIKLRIHSI---QAELRRLLKSKP--YEN-------------CLLVLLNVQ--N 255
Query: 115 PNNIKALQRKAKCLILT 131
A K L+ T
Sbjct: 256 AKAWNAFNLSCKILLTT 272
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 37.8 bits (88), Expect = 2e-04
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
+ +L Q + A+++L + LDP +I A
Sbjct: 54 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96
Score = 28.6 bits (64), Expect = 0.33
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPN 116
+ LA + + AL SL L P
Sbjct: 88 HAALAVSHTNEHNANAALASLRAWLLSQPQ 117
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 38.9 bits (91), Expect = 2e-04
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y+N++ I G LE + L + P++ KAL R+A
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103
Score = 37.0 bits (86), Expect = 7e-04
Identities = 6/49 (12%), Positives = 15/49 (30%)
Query: 80 IKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ N Y LA + + + ++L+P + +
Sbjct: 272 LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320
Score = 35.9 bits (83), Expect = 0.002
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y + Q L + A + +L+P N+ + A L
Sbjct: 313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL 354
Score = 35.1 bits (81), Expect = 0.004
Identities = 5/43 (11%), Positives = 11/43 (25%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
A+ G + A+ + L+ K +
Sbjct: 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422
Score = 32.8 bits (75), Expect = 0.019
Identities = 8/45 (17%), Positives = 12/45 (26%)
Query: 84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ Y LA K G + P + A+ L
Sbjct: 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 388
Score = 32.0 bits (73), Expect = 0.035
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ 122
LAQ ++++ ++ A+ E+ L + LQ
Sbjct: 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500
Score = 30.8 bits (70), Expect = 0.12
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
N + A+ + + LDPN + C
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY 69
Score = 29.3 bits (66), Expect = 0.38
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+L A + L+ +NL P + A L
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTL 286
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 38.0 bits (89), Expect = 3e-04
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
I +A A + +N+L LDP N KA+ L
Sbjct: 221 IEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265
Score = 33.4 bits (77), Expect = 0.013
Identities = 4/42 (9%), Positives = 13/42 (30%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + +K G A+ + ++ D + +
Sbjct: 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118
Score = 31.9 bits (73), Expect = 0.037
Identities = 11/44 (25%), Positives = 14/44 (31%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
+ L QA A S VL L PN +A+
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA 188
Score = 31.1 bits (71), Expect = 0.077
Identities = 5/45 (11%), Positives = 14/45 (31%)
Query: 84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
++ Y + G+ A+ +E + + K +
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152
Score = 30.3 bits (69), Expect = 0.12
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
A K + A+ + N+ R+A C
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCY 47
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 37.9 bits (88), Expect = 4e-04
Identities = 7/42 (16%), Positives = 9/42 (21%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
L A G E A + L P +
Sbjct: 94 ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135
Score = 36.4 bits (84), Expect = 0.001
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
+ LA A++ +G M+++ L L P + +A+ R +
Sbjct: 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66
Score = 33.3 bits (76), Expect = 0.015
Identities = 5/42 (11%), Positives = 11/42 (26%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
L + + A + L+ + P + L
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL 101
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 37.5 bits (87), Expect = 5e-04
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ NL A KL + A+ +L L L N+ A
Sbjct: 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560
Score = 35.6 bits (82), Expect = 0.002
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
N + +A + A+ L L + PN I A + L
Sbjct: 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
Score = 34.0 bits (78), Expect = 0.008
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y L ++LG++ A L++ L + L
Sbjct: 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA 485
Score = 32.1 bits (73), Expect = 0.035
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 77 DSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLILT 131
D IK + Q L + + A + L +D +A + +LT
Sbjct: 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLT 247
Score = 31.3 bits (71), Expect = 0.067
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 78 SLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ +++ + A L +L +DP N+ L
Sbjct: 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349
Score = 28.7 bits (64), Expect = 0.62
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 69 ILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
L S +L+D E+ + + + + + A +DP A
Sbjct: 359 YLISNDLVD-RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409
Score = 27.5 bits (61), Expect = 1.6
Identities = 3/38 (7%), Positives = 12/38 (31%)
Query: 83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
++ Y + + G + ++++ P
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375
Score = 27.5 bits (61), Expect = 1.6
Identities = 6/49 (12%), Positives = 11/49 (22%), Gaps = 7/49 (14%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNL-------DPNNIKALQRKAKCL 128
N L ++ A+ +N L L +
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526
Score = 25.2 bits (55), Expect = 7.8
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ A + G + A+ + L
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 37.0 bits (86), Expect = 5e-04
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
++C A+ Q+ G + AL E +L L+ +N+ A L
Sbjct: 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134
Score = 35.9 bits (83), Expect = 0.001
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 76 LDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+D + LA A K + + A + + +L PNN+ L+ A+
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQ 98
Score = 31.3 bits (71), Expect = 0.061
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNN 117
+++ E A SL+ V+ P+
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat,
williams-beuren syndrome, structural genomics
consortium, SGC; 2.10A {Homo sapiens}
Length = 134
Score = 36.1 bits (84), Expect = 7e-04
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
L M GE + + YG G P IPP +
Sbjct: 89 LLSMRRGELARFLFKPNYAYGTLGCPPL-IPPNTTV 123
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 36.6 bits (85), Expect = 7e-04
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 53 FDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSL-EPALMSLENVL 111
+D+ + +D + AS + + +LI E+ +A +I L + + L
Sbjct: 78 YDILAFSPARAIDEDQLNASADQVIALIDEQRA--KGIAAERIILAGFSQGGAVVLHTAF 135
Query: 112 NLDPNNIKAL 121
+ +
Sbjct: 136 RRYAQPLGGV 145
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 35.8 bits (83), Expect = 8e-04
Identities = 12/47 (25%), Positives = 15/47 (31%)
Query: 82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ CY L LG A L N + PN+ A L
Sbjct: 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL 71
Score = 26.6 bits (59), Expect = 1.5
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNI------KALQRKAKCL 128
A LG E + L ++ ++ +A+ A L
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKL 111
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 36.8 bits (86), Expect = 8e-04
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
++NLA + G L+ ALM + + + P A L
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
Score = 34.4 bits (80), Expect = 0.005
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
NNLA + + G++E A+ L + P A A L
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349
Score = 34.1 bits (79), Expect = 0.008
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y NLA A + G +E A+ + + L +P+ L
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145
Score = 34.1 bits (79), Expect = 0.008
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y NLA A + GS+ A L L P + +L A
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315
Score = 33.7 bits (78), Expect = 0.012
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ NLA + G ++ A+ + + L P+ A A L
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281
Score = 32.9 bits (76), Expect = 0.017
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
LA + + G E A + +P+N L +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIH 43
Score = 32.9 bits (76), Expect = 0.018
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
++NL G + A+ E + LDPN + A L
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213
Score = 32.5 bits (75), Expect = 0.023
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y+NL + G L+ A+ + L L P+ I A L
Sbjct: 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111
Score = 32.5 bits (75), Expect = 0.023
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y NL + + A+ + L+L PN+ A
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247
Score = 32.1 bits (74), Expect = 0.039
Identities = 9/42 (21%), Positives = 12/42 (28%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
++L LG LE A + PN A
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVF 179
Score = 30.2 bits (69), Expect = 0.15
Identities = 4/42 (9%), Positives = 11/42 (26%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
L+ + L+ + + +P +A
Sbjct: 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 35.3 bits (82), Expect = 8e-04
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
LAQ +K + AL E ++ DP+ + K
Sbjct: 10 RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLY 51
Score = 29.9 bits (68), Expect = 0.086
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
Y +L + +L + A+ + + +
Sbjct: 44 YYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics,
structural genomics consortium, SGC, PE prolyl CIS-trans
isomerase; 1.82A {Homo sapiens}
Length = 125
Score = 35.7 bits (83), Expect = 8e-04
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
L M GE+ ++ I GYG +G+ IPP + L +++ L +
Sbjct: 79 LKGMCVGEKRKLIIPPALGYGKEGKG--KIPPESTLIFNIDLLEI 121
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 36.7 bits (84), Expect = 0.001
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y+N+ ++ ++ AL + ++P A A
Sbjct: 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121
Score = 35.6 bits (81), Expect = 0.003
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
++NLA G++ A+ S L L P+ A A CL
Sbjct: 114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155
Score = 32.9 bits (74), Expect = 0.023
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
++NLA + G L+ ALM + + + P A L
Sbjct: 44 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87
Score = 31.3 bits (70), Expect = 0.086
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
NNLA + + G++E A+ L + P A
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 45
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 36.3 bits (84), Expect = 0.001
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 10/72 (13%)
Query: 67 GGILASQELLDSLIK----------ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN 116
G + E + L+ E++ + + L +++ L L L P
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410
Query: 117 NIKALQRKAKCL 128
+ A+
Sbjct: 411 QVVAIASHDGGK 422
Score = 35.5 bits (82), Expect = 0.002
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + L +++ L L L P + A+ +
Sbjct: 245 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGK 286
Score = 34.7 bits (80), Expect = 0.004
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 67 GGILASQELLDSLIK----------ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN 116
G + E + +L+ E++ + + L +++ L L L P
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206
Query: 117 NIKALQRKAKCL 128
+ A+
Sbjct: 207 QVVAIASNGGGK 218
Score = 34.0 bits (78), Expect = 0.010
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + + L +++ L L L P + A+
Sbjct: 279 IASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320
Score = 33.6 bits (77), Expect = 0.011
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 67 GGILASQELLDSLIK----------ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN 116
GG + E + L+ E++ + + L +++ L L L P
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444
Query: 117 NIKALQRKAKCL 128
+ A+
Sbjct: 445 QVVAIASNGGGR 456
Score = 32.8 bits (75), Expect = 0.019
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + L +++ L L L P + A+
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGK 150
Score = 32.8 bits (75), Expect = 0.020
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
E++ + + L +++ L L L P + A+
Sbjct: 70 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK 116
Score = 32.8 bits (75), Expect = 0.021
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + L +++ L L L P + A+
Sbjct: 313 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK 354
Score = 32.8 bits (75), Expect = 0.022
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 67 GGILASQELLDSLIK----------ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN 116
GG + E + L+ +++ + + L +++ L L L P
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376
Query: 117 NIKALQRKAKCL 128
+ A+
Sbjct: 377 QVVAIASNGGGK 388
Score = 32.4 bits (74), Expect = 0.029
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + L +++ L L L P + A+
Sbjct: 143 IASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184
Score = 32.4 bits (74), Expect = 0.031
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 67 GGILASQELLDSLIK----------ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN 116
GG + E + L+ +++ + + L +++ L L L P
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240
Query: 117 NIKALQRKAKCL 128
+ A+
Sbjct: 241 QVVAIASNGGGK 252
Score = 29.7 bits (67), Expect = 0.26
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNN 117
+ + L S+ L + L N+
Sbjct: 449 IASNGGGRPALESIVAQLSRPDPALAALTND 479
Score = 26.3 bits (58), Expect = 3.8
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRK 124
E + ++ + A+ L A L LD + + ++
Sbjct: 2 EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKR 44
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 36.1 bits (84), Expect = 0.002
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y+ + +G+ E A+ L L ++ ++ C+
Sbjct: 273 YSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314
Score = 36.1 bits (84), Expect = 0.002
Identities = 11/59 (18%), Positives = 14/59 (23%)
Query: 70 LASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + + NNL KL AL L L P N
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH 280
Score = 31.5 bits (72), Expect = 0.052
Identities = 3/44 (6%), Positives = 10/44 (22%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + + A L++ P + +
Sbjct: 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVA 203
Score = 31.1 bits (71), Expect = 0.076
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 73 QELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
E +D L +E ++ +LA+ + V+ DP + L L
Sbjct: 12 PESVDGL-QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66
Score = 26.5 bits (59), Expect = 3.0
Identities = 3/38 (7%), Positives = 9/38 (23%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRK 124
+ + + G + A + L +
Sbjct: 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Score = 26.1 bits (58), Expect = 4.4
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 83 RINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+C ++L +++L P+N +
Sbjct: 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS 92
Score = 25.3 bits (56), Expect = 7.8
Identities = 2/35 (5%), Positives = 8/35 (22%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ + + A+ + L +
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 36.1 bits (84), Expect = 0.002
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ +L Q + A+++L + LDP +I A
Sbjct: 58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99
Score = 31.9 bits (73), Expect = 0.037
Identities = 4/43 (9%), Positives = 13/43 (30%)
Query: 84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAK 126
+ N+A + + + A L + + ++
Sbjct: 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR 282
Score = 31.5 bits (72), Expect = 0.058
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ +KL +L A ++ E V P +A +
Sbjct: 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQ 65
Score = 30.3 bits (69), Expect = 0.15
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+N L + AL + L+++P ++
Sbjct: 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
Score = 30.0 bits (68), Expect = 0.20
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ LA + + AL SL L P +
Sbjct: 92 HAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125
Score = 27.6 bits (62), Expect = 1.3
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ +L + + A +L + L P++ +
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 35.8 bits (83), Expect = 0.002
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ L Q + + + A+++L+ L L PNN+KAL
Sbjct: 102 WQFLGITQAENENEQAAIVALQRCLELQPNNLKAL 136
Score = 31.2 bits (71), Expect = 0.076
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
NL + I LG+ A+ + L+L + Q +
Sbjct: 284 RYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAI 325
Score = 30.0 bits (68), Expect = 0.17
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+N L E A+ + L + P I++
Sbjct: 250 WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283
Score = 30.0 bits (68), Expect = 0.19
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
LA + + A +L+N + +P ++ K
Sbjct: 136 LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSP 177
Score = 29.6 bits (67), Expect = 0.23
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
++K G L ++ +E + DP + +A Q
Sbjct: 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQ 109
Score = 27.3 bits (61), Expect = 1.7
Identities = 7/42 (16%), Positives = 11/42 (26%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
L G A+ + L + P + R L
Sbjct: 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL 257
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 35.0 bits (81), Expect = 0.002
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
N A + G E + + N + ++ AK
Sbjct: 41 ITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82
Score = 32.3 bits (74), Expect = 0.016
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNN--IKALQRKAKCL 128
Y + + K + A+ L +K Q+ K L
Sbjct: 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 35.9 bits (82), Expect = 0.002
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLILT 131
N A + G E A L+ L+ D + + L
Sbjct: 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL 247
Score = 29.7 bits (66), Expect = 0.22
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 63 RLDFGGILASQELLDSLIK-----ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN 117
L I + D+ ++ + + C Q +KL L+ A L+ + + D +
Sbjct: 104 LLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163
Query: 118 IKALQRKAKCLILT 131
A +
Sbjct: 164 TLTQLATAWVSLAA 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 35.8 bits (83), Expect = 0.002
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
Y N + A ++ AL + LD IK R+A
Sbjct: 43 YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 35.3 bits (82), Expect = 0.003
Identities = 9/42 (21%), Positives = 12/42 (28%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
N K G A L+ L P A + A+
Sbjct: 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157
Score = 32.6 bits (75), Expect = 0.023
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
LA ++ A S+E+ L DP N A
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELA 44
Score = 28.4 bits (64), Expect = 0.67
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ A+ L + A S L++ P++ +
Sbjct: 45 WLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN 79
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 34.6 bits (80), Expect = 0.003
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
YNN A + + E + + + AK +
Sbjct: 45 YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86
Score = 33.0 bits (76), Expect = 0.009
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNN--IKALQRKAK 126
+ A K L A+ L+ + +K ++ K
Sbjct: 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKELEK 127
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 35.3 bits (82), Expect = 0.003
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ NL +++ A E L L+ N
Sbjct: 144 FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA 178
Score = 33.0 bits (76), Expect = 0.015
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+A K PA + N ++L
Sbjct: 178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212
Score = 33.0 bits (76), Expect = 0.015
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
Y L ++ G+ E A + L L +DP++ A
Sbjct: 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADA 73
Score = 29.9 bits (68), Expect = 0.17
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ LA + A L D N + L
Sbjct: 74 HAALAVVFQTEMEPKLADEEYRKALASDSRNARVL 108
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 35.4 bits (81), Expect = 0.003
Identities = 12/53 (22%), Positives = 18/53 (33%)
Query: 76 LDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+D + + N A S AL LDP + QR+ + L
Sbjct: 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302
Score = 30.0 bits (67), Expect = 0.22
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+N L + K G + A L N +LQ + L
Sbjct: 140 WNQLGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVL 180
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET:
SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A
2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Length = 133
Score = 34.5 bits (80), Expect = 0.003
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
+ M+ G ++ I + GYG +G IPP A L
Sbjct: 90 VQGMKVGGVRRLTIPPQLGYGARGAGG-VIPPNATL 124
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 34.8 bits (80), Expect = 0.003
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKL 40
+ M+ G ++ I + GYG +G IPP A L
Sbjct: 166 VQGMKVGGVRRLTIPPQLGYGARGAAG-VIPPNATL 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 33.8 bits (78), Expect = 0.004
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
L + + + AL L L+ DP A + K L
Sbjct: 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Score = 28.5 bits (64), Expect = 0.36
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNN 117
+ L + G A + E+ L +
Sbjct: 56 WKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase,
isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Length = 167
Score = 34.3 bits (79), Expect = 0.005
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLP--------DFDLA 56
L LM G+ ++ I YG G IPP + L + + L S+ + D
Sbjct: 98 LQLMREGDRWRLFIPYDLAYGVTGGGGM-IPPYSPLEFDVELISIKDGGKGRTAEEVDEI 156
Query: 57 ELPVEKRLD 65
E+ +
Sbjct: 157 LRKAEEDRE 165
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506
binding protein; 1.85A {Arabidopsis thaliana} SCOP:
d.26.1.1 PDB: 1y0o_A
Length = 129
Score = 33.9 bits (78), Expect = 0.005
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 5 LPLMETGEECQIEITARFGYGDKG----EPSKSIPPGAKLYYSLTLHSV 49
+P M TG + + I YGD+G S IPP + L + +
Sbjct: 80 IPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 34.2 bits (79), Expect = 0.006
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ L Q + A+ +L L L P+N AL
Sbjct: 101 WQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 135
Score = 30.8 bits (70), Expect = 0.11
Identities = 6/42 (14%), Positives = 10/42 (23%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
LA + A L + L P + +
Sbjct: 135 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 176
Score = 30.8 bits (70), Expect = 0.11
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
I NL + I LG+ A+ LN+ +
Sbjct: 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321
Score = 30.4 bits (69), Expect = 0.16
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+++ G L A++ E + DP +++A Q
Sbjct: 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 108
Score = 29.2 bits (66), Expect = 0.35
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+N L E A+ + L L P I++
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 287
Score = 26.9 bits (60), Expect = 2.0
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
L G + A+ L++ PN+ + L
Sbjct: 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL 261
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 34.1 bits (78), Expect = 0.007
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 51 PDFDLAELPVEKRLDFGGILASQELLDSLIK----------ERINCYNNLAQAQIKLGSL 100
P + +++ D ASQ+ ++ ++ + + L + +
Sbjct: 1 PKWQAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDY 60
Query: 101 EPALMSLENVLNLDPNNIKALQRKAKCLIL 130
+L++ L L N + A L
Sbjct: 61 SNSLLAYRQALQLRGENAELYAALATVLYY 90
Score = 26.7 bits (59), Expect = 2.1
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 87 YNNLAQAQIKLGS---LEPALMSLENVLNLDPNNIKAL 121
Y LA S ++ L LD N I AL
Sbjct: 81 YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL 118
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 33.9 bits (78), Expect = 0.007
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLPD 52
L LM G +I + + YG + I P L + + L SV
Sbjct: 166 LQLMPAGSTWEIYVPSGLAYGPRS-VGGPIGPNETLIFKIHLISVKKS 212
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 34.2 bits (78), Expect = 0.009
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 67 GGILASQELLDSLIK----------ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN 116
G + E + L+ ++ + + L +++ L L L P+
Sbjct: 199 NGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPD 258
Query: 117 NIKAL 121
+ A+
Sbjct: 259 QVVAI 263
Score = 33.9 bits (77), Expect = 0.009
Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 67 GGILASQELLDSLIK----------ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPN 116
G + E + L+ +++ + + L +++ L L L
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQE 699
Query: 117 NIKAL 121
+ A+
Sbjct: 700 QVVAI 704
Score = 33.9 bits (77), Expect = 0.010
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 73 QELLDSLIK------ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
Q LL L + ++ + + L +++ L L L P+ + A+
Sbjct: 616 QRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 670
Score = 33.9 bits (77), Expect = 0.010
Identities = 7/59 (11%), Positives = 17/59 (28%)
Query: 70 LASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
L L +++ + + L +++ L L L + A+
Sbjct: 551 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGK 609
Score = 33.1 bits (75), Expect = 0.021
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + L +++ L L L P+ + A+
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 372
Score = 32.3 bits (73), Expect = 0.040
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 71 ASQELLDSLIK------ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
Q LL L + E++ + + L +++ L L L P+ + A+
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAI 738
Score = 31.5 bits (71), Expect = 0.062
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ + L +++ L L L P+ + A+
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 331
Score = 31.5 bits (71), Expect = 0.064
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + L +++ L L L P+ + A+
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGK 304
Score = 31.5 bits (71), Expect = 0.066
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ + L +++ L L L P+ + A+
Sbjct: 365 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 399
Score = 30.4 bits (68), Expect = 0.15
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ + L +++ L L L P + A+
Sbjct: 432 IASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAI 466
Score = 30.4 bits (68), Expect = 0.18
Identities = 8/59 (13%), Positives = 19/59 (32%)
Query: 70 LASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
L L +++ + + L +++ L L L P+ + A+
Sbjct: 483 LPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGK 541
Score = 30.0 bits (67), Expect = 0.19
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ + L +++ L L L P + A+
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAI 229
Score = 29.6 bits (66), Expect = 0.31
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 73 QELLDSLIK------ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
Q LL L + +++ + + L +++ L L L P + A+
Sbjct: 718 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAI 772
Score = 29.6 bits (66), Expect = 0.32
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ + L +++ L L L P + A+
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAI 636
Score = 28.1 bits (62), Expect = 0.90
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + L +++ L L L P+ + A+
Sbjct: 534 IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 575
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 32.8 bits (76), Expect = 0.009
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y Q G+ ++ E + LDP K K K L
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL 50
Score = 29.7 bits (68), Expect = 0.11
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNN 117
+ A A + E E L+ ++
Sbjct: 79 WAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 27.0 bits (61), Expect = 1.2
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ +A L E A+ V+N+ +
Sbjct: 43 WLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 33.6 bits (77), Expect = 0.010
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
L ++ G + ++ I YG G P IPP + L + + L V
Sbjct: 181 LKNIKKGGKIKLVIPPELAYGKAGVP--GIPPNSTLVFDVELLDV 223
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 32.9 bits (76), Expect = 0.014
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ LA+ + +G L+ AL L P ++ R A L
Sbjct: 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195
Score = 32.1 bits (74), Expect = 0.031
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 86 CYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
LA+ Q+KLG + PAL + + ++ P +
Sbjct: 41 ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75
Score = 29.4 bits (67), Expect = 0.28
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
L LG + AL E L +P + +A
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEA 41
Score = 27.5 bits (62), Expect = 1.0
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPN 116
+ LG + A SL+ L L+
Sbjct: 121 HLQRGLVYALLGERDKAEASLKQALALEDT 150
Score = 26.7 bits (60), Expect = 2.0
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPN 116
A A + G E A + + +
Sbjct: 188 RVRYASALLLKGKAEEAARAAALEHHHHHH 217
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 32.9 bits (76), Expect = 0.018
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ N + E AL L+ +++ P+++ AL K
Sbjct: 196 FYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237
Score = 32.5 bits (75), Expect = 0.022
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ L +KL + AL L+ + L+ N+ +A + CL
Sbjct: 128 FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169
Score = 31.3 bits (72), Expect = 0.052
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
Y N A + LE AL + L LD + A
Sbjct: 60 YINFANLLSSVNELERALAFYDKALELDSSAATA 93
Score = 31.3 bits (72), Expect = 0.062
Identities = 8/34 (23%), Positives = 10/34 (29%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
G L+ AL V DP + A
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Score = 30.9 bits (71), Expect = 0.080
Identities = 5/34 (14%), Positives = 7/34 (20%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
Y + + A E L N
Sbjct: 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127
Score = 28.6 bits (65), Expect = 0.43
Identities = 3/36 (8%), Positives = 8/36 (22%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ G E A + + + +
Sbjct: 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP 59
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 32.4 bits (75), Expect = 0.020
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ +A + ++G E AL + LD L
Sbjct: 147 HRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181
Score = 31.7 bits (73), Expect = 0.034
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
Y + + K G A+M LE V + D ++
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV 44
Score = 31.3 bits (72), Expect = 0.046
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
L +++ + A+ L V +P N
Sbjct: 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112
Score = 31.3 bits (72), Expect = 0.057
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+L A +K G+++ LE L P+N+K
Sbjct: 45 ALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV 78
Score = 30.5 bits (70), Expect = 0.084
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
L A LG + A+ S + L L PN K
Sbjct: 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 32.5 bits (74), Expect = 0.021
Identities = 6/48 (12%), Positives = 13/48 (27%)
Query: 82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
++ LA + A L N+ + +C +
Sbjct: 68 YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115
Score = 31.7 bits (72), Expect = 0.036
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
+ Q Q++L + A E V+ + L+ KA+ +
Sbjct: 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDE--KLKIKAQSYL 147
Score = 27.8 bits (62), Expect = 0.76
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 60 VEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIK 119
V ++ G L + + ++ + A G +E A + + D N+
Sbjct: 15 VIDAINSGATLKDINAIP---DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD 71
Query: 120 ALQRKAKCL 128
+ A
Sbjct: 72 YIMGLAAIY 80
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 32.4 bits (74), Expect = 0.023
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
L M TG + ++ I + YG +G I P L + + L +V
Sbjct: 174 LQNMPTGAKWRLVIPSDQAYGAEG-AGDLIDPFTPLVFEIELIAV 217
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 32.6 bits (74), Expect = 0.025
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ A+ + + A+ L+ L PNN + C
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291
Score = 29.1 bits (65), Expect = 0.39
Identities = 4/39 (10%), Positives = 9/39 (23%)
Query: 84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ 122
+ LA E A + + + +
Sbjct: 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372
Score = 28.0 bits (62), Expect = 0.94
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKAL 121
+ LA Q ++ A E L A
Sbjct: 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 144
Score = 31.8 bits (72), Expect = 0.026
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 68 GILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ 122
G+ ++ R C L KLG A ++ + + NN +
Sbjct: 61 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115
>1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine
hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo
sapiens} SCOP: c.69.1.14
Length = 232
Score = 32.4 bits (74), Expect = 0.026
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 53 FDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKL-GSLEPALMSLENVL 111
FD+ L + + D GI + E + +LI + + N + +I L G + +SL L
Sbjct: 75 FDIIGLSPDSQEDESGIKQAAENIKALIDQEVK--NGIPSNRIILGGFSQGGALSLYTAL 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 32.0 bits (73), Expect = 0.027
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
+ L + LG E AL S +D N + A+C +
Sbjct: 55 FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97
Score = 31.6 bits (72), Expect = 0.030
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLIL 130
+ A+ ++LG L+ A + L A+ +
Sbjct: 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132
Score = 29.3 bits (66), Expect = 0.21
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 73 QELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
L L ++ + L Q + G + A + + LD + + C
Sbjct: 8 AMLRG-LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACR 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 32.3 bits (74), Expect = 0.027
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
L + + LG L+ A + + + +N
Sbjct: 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251
Score = 31.9 bits (73), Expect = 0.036
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+N L + G+ + A + ++VL LDP A
Sbjct: 80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113
Score = 30.7 bits (70), Expect = 0.11
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ N A G + A L DPN+
Sbjct: 114 HLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR 147
Score = 29.2 bits (66), Expect = 0.32
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 69 ILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
ILAS+ L D ER LG A L + P+ +
Sbjct: 31 ILASRALTDD---ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 79
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 31.2 bits (71), Expect = 0.031
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRK 124
Y + A KLG + AL + ++ + L+P++ RK
Sbjct: 38 YYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 31.6 bits (73), Expect = 0.031
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNN 117
+ NL A K G + A+ + L LDP +
Sbjct: 106 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 30.0 bits (69), Expect = 0.11
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ NL A K G + A+ + L LDP + +A
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 37
Score = 29.7 bits (68), Expect = 0.14
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ NL A K G + A+ + L LDP + +A
Sbjct: 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Score = 29.7 bits (68), Expect = 0.16
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ NL A K G + A+ + L LDP + +A
Sbjct: 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 31.9 bits (72), Expect = 0.032
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 89 NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
++ G AL ++ + + + KA CL+
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL 51
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 31.4 bits (71), Expect = 0.037
Identities = 11/64 (17%), Positives = 23/64 (35%)
Query: 65 DFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRK 124
G + +L+ + + + +LA Q + G E A + + LD + +
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 125 AKCL 128
C
Sbjct: 62 GACR 65
Score = 30.3 bits (68), Expect = 0.11
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
+ L + +G + A+ S +D + A+CL+
Sbjct: 56 RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.038
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 35/110 (31%)
Query: 47 HSVLPDFDLAELPVEKRLDFG-GI----LA----SQELLDSLIKERINCYNNLA---QAQ 94
+ P+ L +E L+ G+ L+ +QE + + + N + L Q +
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV-NKTNSH--LPAGKQVE 367
Query: 95 IKL----------GSLEP-ALMSLENVL-------NLDPNNIKALQRKAK 126
I L G P +L L L LD + I +RK K
Sbjct: 368 ISLVNGAKNLVVSGP--PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR,
scaffold, peroxisome, membrane fission, protein binding;
1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A
3uux_A
Length = 134
Score = 30.6 bits (69), Expect = 0.064
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 68 GILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ 122
G+ ++ R C L KLG A ++ + + NN +
Sbjct: 62 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116
>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold,
hydrolase; 1.72A {Homo sapiens}
Length = 239
Score = 30.9 bits (70), Expect = 0.075
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 53 FDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSL-EPALMSLENVL 111
FD ++ + I ++L LI E + + + + +I +G M++
Sbjct: 80 FDRFKITNDCPEHLESIDVMCQVLTDLIDEEVK--SGIKKNRILIGGFSMGGCMAMHLAY 137
Query: 112 NLDPNNIKAL 121
++ +
Sbjct: 138 RN-HQDVAGV 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 30.4 bits (70), Expect = 0.078
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ NL A K G + A+ + L LDPNN +A
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45
Score = 29.7 bits (68), Expect = 0.15
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ NL A K G + A+ + L LDPNN +A
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Score = 28.5 bits (65), Expect = 0.32
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ NL A K G + A+ + L LDPNN +A
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 30.8 bits (70), Expect = 0.091
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
N+ L ++ A + +N D + A
Sbjct: 40 CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73
Score = 29.3 bits (66), Expect = 0.24
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKA 125
N+A K + A L ++ + KA
Sbjct: 124 LYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162
Score = 25.1 bits (55), Expect = 7.4
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLN-LDPNNIKALQRKAKCLIL 130
Y + + A+ L+ L L N + + L
Sbjct: 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKL 118
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 29.3 bits (67), Expect = 0.12
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ NL A K G + A+ + L LDPNN +A
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Score = 28.1 bits (64), Expect = 0.31
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
+ NL A K G + A+ + L LDPNN +A
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 29.8 bits (67), Expect = 0.21
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 73 QELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
+ LLD ++ A ++ + AL L + L N + A+ LI
Sbjct: 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI 162
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 29.3 bits (65), Expect = 0.30
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 74 ELLDSLIKERINCY---NNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ ++I+E+ Y ++ L L + ++LN D N A Q + +
Sbjct: 153 NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 210
Score = 28.1 bits (62), Expect = 0.74
Identities = 4/44 (9%), Positives = 15/44 (34%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ + + + + L ++ +L D N ++ +
Sbjct: 201 HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 244
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 29.1 bits (65), Expect = 0.31
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 74 ELLDSLIK-----ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ 122
LL+ L+ E+ + LA +L E AL + +L +P N +A +
Sbjct: 56 VLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 29.1 bits (65), Expect = 0.40
Identities = 5/45 (11%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
++ ++ + A SL+ ++ ++ K I
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMY-KEMENYPTCYKKCI 199
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 28.6 bits (64), Expect = 0.64
Identities = 7/77 (9%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 38 AKLYYSL-TLHSVLPDFDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIK 96
A+ ++ + + + + + + +E + C++ A +
Sbjct: 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEI-----YKEHEA-YNIRLLQCHSLFATNFLD 196
Query: 97 LGSLEPALMSLENVLNL 113
L E A+ + ++
Sbjct: 197 LKQYEDAISHFQKAYSM 213
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function;
2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Length = 126
Score = 27.1 bits (60), Expect = 1.1
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 74 ELLDSLIK-----ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ 122
LL+ L+ E+ + LA +L E AL + +L +P N +A +
Sbjct: 59 VLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 27.2 bits (61), Expect = 1.3
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 68 GILASQELLDSLIKERINCYN---------NLAQAQIKLGSLEPALMSLENVLNLD 114
G L +L+ +LI+E + + QA+ LE + +++VL +
Sbjct: 56 GELVPDDLIIALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFE 111
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 26.5 bits (58), Expect = 2.9
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 61 EKRLDFGGILASQELLDSLIKER---INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN 117
+ L G + + ELL IK + ++ + G E A L + L P
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 118 IKALQ 122
+
Sbjct: 65 LPGAS 69
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 26.3 bits (58), Expect = 3.3
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 7/77 (9%)
Query: 38 AKLYYSL-TLHSVLPDFDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIK 96
A+ ++ + + + ++ + + LD + I +A
Sbjct: 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDI------YQNHPLYSIRTIQSLFVIAGNYDD 194
Query: 97 LGSLEPALMSLENVLNL 113
+ AL LE L L
Sbjct: 195 FKHYDKALPHLEAALEL 211
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 26.0 bits (58), Expect = 3.8
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 68 GILASQELLDSLIKERIN---CYN---------NLAQAQIKLGSLEPALMSLENVLNLD 114
G L +L + L+ +R+N N ++ QA+ LE ++ VL
Sbjct: 76 GDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFR 134
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 26.2 bits (57), Expect = 3.9
Identities = 11/93 (11%), Positives = 25/93 (26%), Gaps = 15/93 (16%)
Query: 26 DKGEPSKSIPPGAKLYYSLTLHSVLP-DFDLAELPVEKRLDFGGILASQELLDSLIKERI 84
D + + +Y + +++ D + + +D ++
Sbjct: 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID--------------LEMSW 310
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN 117
Y L + G A + NL P
Sbjct: 311 LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 26.0 bits (58), Expect = 4.4
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 68 GILASQELLDSLIKERIN---CYN---------NLAQAQIKLGSLEPALMSLENVLNLD 114
G E++ L+KE+ + C N + QA+ L SL +V+ +
Sbjct: 61 GNFVGDEIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFE 119
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 26.0 bits (58), Expect = 4.4
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 68 GILASQELLDSLIKERIN---CYN---------NLAQAQIKLGSLEPALMSLENVLNLD 114
G L +++ SL+ E++ C N+ QA+ L+ L+ V +
Sbjct: 85 GKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFN 143
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 25.6 bits (57), Expect = 4.4
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 68 GILASQELLDSLIKERIN---CYN---------NLAQAQIKLGSLEPALMSLENVLNLD 114
G L S E++ LI++ + C N + QA++ +E L++V+
Sbjct: 72 GKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFS 130
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 25.6 bits (55), Expect = 4.4
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 52 DFDLAELPVEKRLDFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVL 111
++D A + ++ + +E D + C+ LA+A L S + AL S + L
Sbjct: 26 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAF-CHAGLAEALAGLRSFDEALHSADKAL 84
Query: 112 NLDP 115
+
Sbjct: 85 HYFN 88
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Length = 345
Score = 25.5 bits (57), Expect = 5.6
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 30 PSKSIPPGAKLYYSLTLHSVLPDFDLAELPVEKRLDFGGILAS-----QELLDSL 79
P++ PPG +L AE V + G L L+ +
Sbjct: 99 PARKAPPGTRLLLLSPKDLAPVPGLQAE--VVAVEEDGVRLLRFQGDLVAHLEEV 151
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 25.6 bits (57), Expect = 5.9
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 68 GILASQELLDSLIKERIN---CYN---------NLAQAQIKLGSLEPALMSLENVLNLD 114
G L E+ ++KER+ C +AQA+ LE ++ V+N+
Sbjct: 56 GELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQ 114
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 25.2 bits (56), Expect = 7.6
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 12/59 (20%)
Query: 68 GILASQELLDSLIKERIN---CYN---------NLAQAQIKLGSLEPALMSLENVLNLD 114
G L E+ ++ ER++ C +AQA L L+ VLN+
Sbjct: 56 GNLVPDEVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIK 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.138 0.392
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,983,404
Number of extensions: 110841
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 332
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.7 bits)