RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18096
(131 letters)
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 115
Score = 41.2 bits (96), Expect = 3e-06
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
+D L M+ E+C + + R+G+G+ G+P I P A+L Y +TL S
Sbjct: 64 IDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 41.3 bits (96), Expect = 3e-06
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
D L M GE+ ++EI + YG KG+P IPP AKL + + L +
Sbjct: 67 WDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI 115
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Legionella pneumophila [TaxId: 446]}
Length = 204
Score = 41.8 bits (97), Expect = 5e-06
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
L LM G +I + + YG + I P L + + L SV
Sbjct: 154 WTEALQLMPAGSTWEIYVPSGLAYGPRSVGGP-IGPNETLIFKIHLISV 201
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 38.2 bits (88), Expect = 4e-05
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
++ + ME GE + + + +G G+ IPP A+L Y L L S
Sbjct: 64 LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSF 112
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 39.3 bits (90), Expect = 5e-05
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
++NLA + G L+ ALM + + + P A L
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
Score = 37.0 bits (84), Expect = 3e-04
Identities = 5/58 (8%), Positives = 14/58 (24%), Gaps = 3/58 (5%)
Query: 74 ELLDSLIK---ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
L + + L+ + L+ + + +P +A
Sbjct: 20 RHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77
Score = 36.2 bits (82), Expect = 6e-04
Identities = 14/64 (21%), Positives = 24/64 (37%)
Query: 65 DFGGILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRK 124
F +A+ SL + NLA + G ++ A+ + + L P+ A
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
Query: 125 AKCL 128
A L
Sbjct: 278 ANAL 281
Score = 33.5 bits (75), Expect = 0.005
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 89 NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCLI 129
LA + + G E A + +P+N L +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF 44
Score = 28.1 bits (61), Expect = 0.28
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
++NL G + A+ E + LDPN + A L
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA
{Escherichia coli [TaxId: 562]}
Length = 210
Score = 38.7 bits (89), Expect = 5e-05
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
L ++ G + ++ I YG G P IPP + L + + L V
Sbjct: 163 WTEGLKNIKKGGKIKLVIPPELAYGKAGVPG--IPPNSTLVFDVELLDV 209
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 36.6 bits (84), Expect = 1e-04
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
D + M+ GE C I + YG G P K IPP A L + + L
Sbjct: 70 WDIAIATMKVGEVCHITCKPEYAYGSAGSPPK-IPPNATLVFEVELFEF 117
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 125
Score = 36.8 bits (84), Expect = 2e-04
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 5 LPLMETGEECQIEITARFGYGDKGEPSKS----IPPGAKLYYSLTL 46
+P M TG + + I YGD+G K IPP + L + +
Sbjct: 76 IPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 113
Score = 35.1 bits (80), Expect = 6e-04
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
D +P + GE+ ++ I + YG +G P IPP + L + + L V
Sbjct: 65 WDVGIPKLSVGEKARLTIPGPYAYGPRGFPGL-IPPNSTLVFDVELLKV 112
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Trypanosoma cruzi [TaxId: 5693]}
Length = 160
Score = 35.2 bits (80), Expect = 7e-04
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSVLP 51
L LM G+ ++ I YG G IPP + L + + L S+
Sbjct: 91 WTEALQLMREGDRWRLFIPYDLAYGVTGGGGM-IPPYSPLEFDVELISIKD 140
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 34.3 bits (79), Expect = 0.001
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 68 GILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQ 122
G+ ++ R C L KLG A ++ + + NN +
Sbjct: 57 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an
immunophilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 34.0 bits (77), Expect = 0.001
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
+ + M G+ ++ I+ + YG G P IPP A L + + L +
Sbjct: 59 WEEGVAQMSVGQRAKLTISPDYAYGATGHPGI-IPPHATLVFDVELLKL 106
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 111
Score = 33.6 bits (76), Expect = 0.002
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 1 MDYVLPLMETGEECQIEITARFGYGDKGEPSKSIPPGAKLYYSLTLHSV 49
D + M+ GE C + + YG G K IP A L++ + L
Sbjct: 63 WDIGVATMKKGEICHLLCKPEYAYGATGSLPK-IPSNATLFFEVELLDF 110
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 33.5 bits (76), Expect = 0.002
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKA 125
E+ + LA +L E AL + +L +P N +A + +
Sbjct: 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113
Score = 23.9 bits (51), Expect = 5.5
Identities = 3/40 (7%), Positives = 9/40 (22%)
Query: 88 NNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
+ + + L ++ + A C
Sbjct: 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWC 42
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 32.9 bits (73), Expect = 0.008
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 84 INCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKA 125
I NL + I LG+ A+ LN+ +
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 281
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 31.2 bits (70), Expect = 0.027
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
++ + G E A L + L P + + +
Sbjct: 33 RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 74
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 30.9 bits (68), Expect = 0.032
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKA 120
L + + LG L+ A + + + +N
Sbjct: 212 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245
Score = 28.2 bits (61), Expect = 0.24
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 3/59 (5%)
Query: 69 ILASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKC 127
ILAS+ L D ER LG A L + P+ +
Sbjct: 25 ILASRALTD---DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 80
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 30.0 bits (66), Expect = 0.070
Identities = 19/77 (24%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 57 ELPVEKRLDFGGILASQELLDSLIKERINC---YNNLAQAQIKLGSLEPALMSLENVLNL 113
EL VEK L S + L L E C L +A L + L + +
Sbjct: 246 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305
Query: 114 DPNNIKALQRKAKCLIL 130
DP L +L
Sbjct: 306 DPMRAAYLDDLRSKFLL 322
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 29.2 bits (64), Expect = 0.12
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 87 YNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
Y+ + E A + + L+ N + L
Sbjct: 46 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLL 87
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 27.9 bits (61), Expect = 0.33
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 85 NCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKA 125
N+A K + A L ++ + KA
Sbjct: 121 EVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 161
>d2f22a1 a.213.1.2 (A:1-141) Hypothetical protein BH3987 {Bacillus
halodurans [TaxId: 86665]}
Length = 141
Score = 27.0 bits (59), Expect = 0.52
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 64 LDFGGILASQE--LLDSL---IKERINCYNNLAQAQIKLGSLEPALMSL 107
+ F G LAS E LLD L ++E + + IK+G ++M L
Sbjct: 59 IKFPGRLASDEHRLLDELERSMEELVFEFKQTTFNSIKMGENYLSIMEL 107
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 27.4 bits (60), Expect = 0.59
Identities = 8/58 (13%), Positives = 15/58 (25%)
Query: 71 ASQELLDSLIKERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
+ S +C +L A + L P+N + + A
Sbjct: 139 IVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA 196
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 27.0 bits (59), Expect = 0.69
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 89 NLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAKCL 128
A+A G + + ++ +P+N A + +A L
Sbjct: 435 EQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADAL 474
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 25.6 bits (55), Expect = 1.0
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNNIKALQRKAK 126
++++ + L+ A + G L+ AL+ + +L LDP + +A
Sbjct: 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 23.8 bits (50), Expect = 5.3
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 82 ERINCYNNLAQAQIKLGSLEPALMSLENVLNLDPNN 117
E++N + +G+++ AL + LDP+N
Sbjct: 1 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.138 0.392
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,918
Number of extensions: 19773
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 36
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)